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Pregenerated sensors for TSSK3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000411

Ensembl transcript IDs: ENSMUST00000000421.6

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp CTCAACCATCTGGCGGAAGAGGGCCTTGGCCCGGCTCTCGGGAAGTaGCCCTCCGTTCAGCACACAGTCAAAGACATCCCCTCCCTCAGC +
Preference number: 5 (lower is better)
Translates to: LNHLAEEGLGPALGK*PSVQHTVKDIPSLS
Trigger: GCTGAGGGAGGGGATGTCTTTGACTGTGTGCTGAACGGAGGGCCACTTCCCGAGAGCCGGGCCAAGGCCCTCTTCCGCCAGATGGTTGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6
CDS TCA 90 bp CATGTCTGGTTCCAGGAGCCGCTTGAGCAGGTCCTGGCATTCGGTTaGGATGCCCAAATGAGTGGGGAAGGACACCCCCTTCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: HVWFQEPLEQVLAFG*DAQMSGEGHPLLLL
Trigger: CAGCAGCAGAAGGGGGTGTCCTTCCCCACTCATTTGGGCATCTCAACCGAATGCCAGGACCTGCTCAAGCGGCTCCTGGAACCAGACATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6
CDS TCA 90 bp CTTCGATTGAAGGCCGGAGTATCATGTCTGGTTCCAGGAGCCGCTTaGGCAGGTCCTGGCATTCGGTTGAGATGCCCAAATGAGTGGGGA +
Preference number: 5 (lower is better)
Translates to: LRLKAGVSCLVPGAA*AGPGIRLRCPNEWG
Trigger: TCCCCACTCATTTGGGCATCTCAACCGAATGCCAGGACCTGCTCAAGCGGCTCCTGGAACCAGACATGATACTCCGGCCTTCAATCGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6
CDS GCA 90 bp CAAAAGGTAGACTTGCACAGAGCATTACATACAGGACCACACCCATaGTCCAGACATCACCTTTCTTGCTATCATGGGGTATGCCCTGTA +
Preference number: 5 (lower is better)
Translates to: QKVDLHRALHTGPHP*SRHHLSCYHGVCPV
Trigger: TACAGGGCATACCCCATGATAGCAAGAAAGGTGATGTCTGGAGCATGGGTGTGGTCCTGTATGTAATGCTCTGTGCAAGTCTACCTTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6
CDS CCA 72 bp CTGGCGGAAGAGGGCCTTGGCCCGGCTCTCGGGAAGTaGCCCTCCGTTCAGCACACAGTCAAAGACATCCCC +
Preference number: 6 (lower is better)
Translates to: LAEEGLGPALGK*PSVQHTVKDIP
Trigger: GGGGATGTCTTTGACTGTGTGCTGAACGGAGGGCCACTTCCCGAGAGCCGGGCCAAGGCCCTCTTCCGCCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6
CDS CCA 72 bp GCAGGTCCTGGCATTCGGTTGAGATGCCCAAATGAGTaGGGAAGGACACCCCCTTCTGCTGCTGCCACAGCA +
Preference number: 6 (lower is better)
Translates to: AGPGIRLRCPNE*GRTPPSAAATA
Trigger: TGCTGTGGCAGCAGCAGAAGGGGGTGTCCTTCCCCACTCATTTGGGCATCTCAACCGAATGCCAGGACCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6
CDS CAA 72 bp CTGCCACAGAAGGTCTGGCTCAGCTCCCTGCGTGACTaGGGTAGCACCTTGGCAAAGCCAAAGTCGGTCAGC +
Preference number: 6 (lower is better)
Translates to: LPQKVWLSSLRD*GSTLAKPKSVS
Trigger: GCTGACCGACTTTGGCTTTGCCAAGGTGCTACCCAAGTCACGCAGGGAGCTGAGCCAGACCTTCTGTGGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6
CDS TCA 72 bp TTGAGCAGGTCCTGGCATTCGGTTGAGATGCCCAAATaGGTGGGGAAGGACACCCCCTTCTGCTGCTGCCAC +
Preference number: 6 (lower is better)
Translates to: LSRSWHSVEMPK*VGKDTPFCCCH
Trigger: GTGGCAGCAGCAGAAGGGGGTGTCCTTCCCCACTCATTTGGGCATCTCAACCGAATGCCAGGACCTGCTCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6
CDS TCA 72 bp TTCCAGGAGCCGCTTGAGCAGGTCCTGGCATTCGGTTaGGATGCCCAAATGAGTGGGGAAGGACACCCCCTT +
Preference number: 6 (lower is better)
Translates to: FQEPLEQVLAFG*DAQMSGEGHPL
Trigger: AAGGGGGTGTCCTTCCCCACTCATTTGGGCATCTCAACCGAATGCCAGGACCTGCTCAAGCGGCTCCTGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6
CDS CCA 72 bp TGCCACAGAAGGTCTGGCTCAGCTCCCTGCGTGACTTaGGTAGCACCTTGGCAAAGCCAAAGTCGGTCAGCT +
Preference number: 6 (lower is better)
Translates to: CHRRSGSAPCVT*VAPWQSQSRSA
Trigger: AGCTGACCGACTTTGGCTTTGCCAAGGTGCTACCCAAGTCACGCAGGGAGCTGAGCCAGACCTTCTGTGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6
CDS GCA 72 bp TGCTCCAGACATCACCTTTCTTGCTATCATGGGGTATaGCCTGTAGCACCTCAGGGGCGGCATAGGCTGTGC +
Preference number: 6 (lower is better)
Translates to: CSRHHLSCYHGV*PVAPQGRHRLC
Trigger: GCACAGCCTATGCCGCCCCTGAGGTGCTACAGGGCATACCCCATGATAGCAAGAAAGGTGATGTCTGGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6
CDS CAA 72 bp GAAGGCCGGAGTATCATGTCTGGTTCCAGGAGCCGCTaGAGCAGGTCCTGGCATTCGGTTGAGATGCCCAAA +
Preference number: 6 (lower is better)
Translates to: EGRSIMSGSRSR*SRSWHSVEMPK
Trigger: TTTGGGCATCTCAACCGAATGCCAGGACCTGCTCAAGCGGCTCCTGGAACCAGACATGATACTCCGGCCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6
CDS TCA 72 bp AAGGCCGGAGTATCATGTCTGGTTCCAGGAGCCGCTTaGGCAGGTCCTGGCATTCGGTTGAGATGCCCAAAT +
Preference number: 6 (lower is better)
Translates to: KAGVSCLVPGAA*AGPGIRLRCPN
Trigger: ATTTGGGCATCTCAACCGAATGCCAGGACCTGCTCAAGCGGCTCCTGGAACCAGACATGATACTCCGGCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6
CDS CCA 72 bp GTACGGACAATCTGGAGCTCACGAGGCAGGAATCTCTaGATAAACTCTTCTGGCCCTCCCATCTTGTCTATA +
Preference number: 6 (lower is better)
Translates to: VRTIWSSRGRNL*INSSGPPILSI
Trigger: TATAGACAAGATGGGAGGGCCAGAAGAGTTTATCCAGAGATTCCTGCCTCGTGAGCTCCAGATTGTCCGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6
CDS CAA 90 bp GCTGCCACAGCATCTTGGGGATATCTGTGTCATCAAAAGGTAGACTaGCACAGAGCATTACATACAGGACCACACCCATGCTCCAGACAT +
Preference number: 6 (lower is better)
Translates to: AATASWGYLCHQKVD*HRALHTGPHPCSRH
Trigger: ATGTCTGGAGCATGGGTGTGGTCCTGTATGTAATGCTCTGTGCAAGTCTACCTTTTGATGACACAGATATCCCCAAGATGCTGTGGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6
CDS TCA 72 bp TTCCATCTGCTGACTCCAGCATCTCATACACCTGGATaGTGTTTTTGTGGTCCAGGGTACGGACAATCTGGA +
Preference number: 6 (lower is better)
Translates to: FHLLTPASHTPG*CFCGPGYGQSG
Trigger: TCCAGATTGTCCGTACCCTGGACCACAAAAACATCATCCAGGTGTATGAGATGCTGGAGTCAGCAGATGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000421.6