Pregenerated sensors for TSSK2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045521Ensembl transcript IDs: ENSMUST00000055374.8
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAATTTTACTTGTTCCTTGCACCTGTGCCTTCTTCAGCTCCTACCTaGCTACTTAGCTTATGTGGGTGCAGACTGCACACCACGATACCC | + |
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Preference number: 1 (lower is better) Translates to: EFYLFLAPVPSSAPT*LLSLCGCRLHTTIP Trigger: GGGTATCGTGGTGTGCAGTCTGCACCCACATAAGCTAAGTAGGCAGGTAGGAGCTGAAGAAGGCACAGGTGCAAGGAACAAGTAAAATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| 3UTR-3UTR GCA 90 bp | TTGTGGTTTATTTGGTGGTCAGTAATTAATGGCTTTGCTACTAAGTGGAAGAAATATGTGGGTGCAGACTaGACACCACGATACCCCCAG | + |
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Preference number: 2 (lower is better) Translates to: LWFIWWSVINGFATKWKKYVGAD*TPRYPQ Trigger: CTGGGGGTATCGTGGTGTGCAGTCTGCACCCACATA...TTTCTTCCACTTAGTAGCAAAGCCATTAATTACTGACCACCAAATAAACCACAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| 3UTR CAA 90 bp | CTAATAGAACGTAATCAAAATAGTGGTTTAATTGACGAATTTTACTaGTTCCTTGCACCTGTGCCTTCTTCAGCTCCTACCTGCCTACTT | + |
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Preference number: 2 (lower is better) Translates to: LIERNQNSGLIDEFY*FLAPVPSSAPTCLL Trigger: AAGTAGGCAGGTAGGAGCTGAAGAAGGCACAGGTGCAAGGAACAAGTAAAATTCGTCAATTAAACCACTATTTTGATTACGTTCTATTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| 3UTR GCA 72 bp | TCTTCAGCTCCTACCTGCCTACTTAGCTTATGTGGGTaGAGACTGCACACCACGATACCCCCAGGGCCCTCT | + |
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Preference number: 3 (lower is better) Translates to: SSAPTCLLSLCG*RLHTTIPPGPS Trigger: AGAGGGCCCTGGGGGTATCGTGGTGTGCAGTCTGCACCCACATAAGCTAAGTAGGCAGGTAGGAGCTGAAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| 3UTR GCA 72 bp | TTGTTCCTTGCACCTGTGCCTTCTTCAGCTCCTACCTaGCTACTTAGCTTATGTGGGTGCAGACTGCACACC | + |
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Preference number: 3 (lower is better) Translates to: LFLAPVPSSAPT*LLSLCGCRLHT Trigger: GGTGTGCAGTCTGCACCCACATAAGCTAAGTAGGCAGGTAGGAGCTGAAGAAGGCACAGGTGCAAGGAACAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR TCA 90 bp | CTTAGCTTATGTGGGTGCAGACTGCACACCACGATACCCCCAGGGCCCTCTCCAAGCCCTTGCCCAGATTaGTTCCCACGATGTAACCCT | + |
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Preference number: 4 (lower is better) Translates to: LSLCGCRLHTTIPPGPSPSPCPD*FPRCNP Trigger: AGGGTTACATCGTGGGAATCAATCTGGGCAAGGGCT...TGGAGAGGGCCCTGGGGGTATCGTGGTGTGCAGTCTGCACCCACATAAGCTAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR TCA 90 bp | CTTAGCTTATGTGGGTGCAGACTGCACACCACGATACCCCCAGGGCCCTCTCCAGAAGGTTCTCACATTTaGGGTCTCGGTGGACGACAT | + |
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Preference number: 4 (lower is better) Translates to: LSLCGCRLHTTIPPGPSPEGSHI*GLGGRH Trigger: ATGTCGTCCACCGAGACCTCAAATGTGAGAACCTTC...TGGAGAGGGCCCTGGGGGTATCGTGGTGTGCAGTCTGCACCCACATAAGCTAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR GCA 90 bp | CAGCTCCTACCTGCCTACTTAGCTTATGTGGGTGCAGACTGCACACCACGATACGCGGAACATCTTGCGTaGCACATCCTCATGCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: QLLPAYLAYVGADCTPRYAEHLA*HILMQG Trigger: GCCCTGCATGAGGATGTGGCACGCAAGATGTTCCGC...GTATCGTGGTGTGCAGTCTGCACCCACATAAGCTAAGTAGGCAGGTAGGAGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR GCA 90 bp | CTCCTACCTGCCTACTTAGCTTATGTGGGTGCAGACTGCACACCACGATACCCCGCTGGCGGAACATCTTaGGTGCCACATCCTCATGCA | + |
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Preference number: 4 (lower is better) Translates to: LLPAYLAYVGADCTPRYPAGGTS*VPHPHA Trigger: TGCATGAGGATGTGGCACGCAAGATGTTCCGCCAGC...GGGGTATCGTGGTGTGCAGTCTGCACCCACATAAGCTAAGTAGGCAGGTAGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR TCA 90 bp | CTTAGCTTATGTGGGTGCAGACTGCACACCACGATACCCCCAGGGCCCTCTCCATCAGCTCCAGAAATGTaGTGGTCTTTAGCTCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: LSLCGCRLHTTIPPGPSPSAPEM*WSLALE Trigger: TTCCAGAGCTAAAGACCATCACATTTCTGGAGCTGA...TGGAGAGGGCCCTGGGGGTATCGTGGTGTGCAGTCTGCACCCACATAAGCTAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR GCA 90 bp | CAGCTCCTACCTGCCTACTTAGCTTATGTGGGTGCAGACTGCACACCACGATACGGCAGATTTGACTTTTaGGTAGGAGCCCTTGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: QLLPAYLAYVGADCTPRYGRFDF*VGALAQ Trigger: CTGGGCAAGGGCTCCTACGCAAAAGTCAAATCTGCC...GTATCGTGGTGTGCAGTCTGCACCCACATAAGCTAAGTAGGCAGGTAGGAGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR TCA 90 bp | CAGCTCCTACCTGCCTACTTAGCTTATGTGGGTGCAGACTGCACACCACGATACTGGAGCCACAGACCATaGTGTAGAGAATCACACCCA | + |
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Preference number: 4 (lower is better) Translates to: QLLPAYLAYVGADCTPRYWSHRP*CRESHP Trigger: TGGGTGTGATTCTCTACATCATGGTCTGTGGCTCCA...GTATCGTGGTGTGCAGTCTGCACCCACATAAGCTAAGTAGGCAGGTAGGAGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR TCA 90 bp | TGGTGGTCAGTAATTAATGGCTTTGCTACTAAGTGGAAGAAAGCTAATAGAACGCACAGAAGGTTTTGCTaGGGACGATGCGCCCACTCC | + |
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Preference number: 4 (lower is better) Translates to: WWSVINGFATKWKKANRTHRRFC*GRCAHS Trigger: GGAGTGGGCGCATCGTCCTCAGCAAAACCTTCTGTG...CGTTCTATTAGCTTTCTTCCACTTAGTAGCAAAGCCATTAATTACTGACCACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR TCA 90 bp | TTAATTGACGAATTTTACTTGTTCCTTGCACCTGTGCCTTCTTCAGCTCCTACCGGCTGCATAAGCTGCTaGCCCACAGAAGGTTTTGCT | + |
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Preference number: 4 (lower is better) Translates to: LIDEFYLFLAPVPSSAPTGCISC*PTEGFA Trigger: AGCAAAACCTTCTGTGGGTCAGCAGCTTATGCAGCC...GGTAGGAGCTGAAGAAGGCACAGGTGCAAGGAACAAGTAAAATTCGTCAATTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR TCA 90 bp | AATAGTGGTTTAATTGACGAATTTTACTTGTTCCTTGCACCTGTGCCTTCTTCACTGAGTAGGCAGATTTaGCTTTTGCGTAGGAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: NSGLIDEFYLFLAPVPSSLSRQI*LLRRSP Trigger: AGGGCTCCTACGCAAAAGTCAAATCTGCCTACTCAG...TGAAGAAGGCACAGGTGCAAGGAACAAGTAAAATTCGTCAATTAAACCACTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR TCA 90 bp | TGGTGGTCAGTAATTAATGGCTTTGCTACTAAGTGGAAGAAAGCTAATAGAACGGAACTTGAGGCGCTCTaGGTAGGCAGATTTGACTTT | + |
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Preference number: 4 (lower is better) Translates to: WWSVINGFATKWKKANRTELEAL*VGRFDF Trigger: AAAGTCAAATCTGCCTACTCAGAGCGCCTCAAGTTC...CGTTCTATTAGCTTTCTTCCACTTAGTAGCAAAGCCATTAATTACTGACCACCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR CCA 90 bp | AATAGTGGTTTAATTGACGAATTTTACTTGTTCCTTGCACCTGTGCCTTCTTCAGGCTGTAGCCATGAGTaGCTAAGGATCTCATCAATG | + |
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Preference number: 4 (lower is better) Translates to: NSGLIDEFYLFLAPVPSSGCSHE*LRISSM Trigger: CATTGATGAGATCCTTAGCCACTCATGGCTACAGCC...TGAAGAAGGCACAGGTGCAAGGAACAAGTAAAATTCGTCAATTAAACCACTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR TCA 90 bp | TTGTGGTTTATTTGGTGGTCAGTAATTAATGGCTTTGCTACTAAGTGGAAGAAATGCGCAGCATCTTTTTaGTGTCAGAGTCATCGTAGG | + |
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Preference number: 4 (lower is better) Translates to: LWFIWWSVINGFATKWKKCAASF*CQSHRR Trigger: CCTACGATGACTCTGACATCAAAAAGATGCTGCGCA...TTTCTTCCACTTAGTAGCAAAGCCATTAATTACTGACCACCAAATAAACCACAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| 3UTR CAA 72 bp | CGTAATCAAAATAGTGGTTTAATTGACGAATTTTACTaGTTCCTTGCACCTGTGCCTTCTTCAGCTCCTACC | + |
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Preference number: 4 (lower is better) Translates to: RNQNSGLIDEFY*FLAPVPSSAPT Trigger: GGTAGGAGCTGAAGAAGGCACAGGTGCAAGGAACAAGTAAAATTCGTCAATTAAACCACTATTTTGATTACG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CCA 90 bp | TCCTGTCTTCATTCTCGGGTGTCACCAGCATCCGTTGCTGGGGTTTaGTCGCCAGCTTGTGGTCAGGCCGGTGTTCGGGTCTGGAGCCTG | + |
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Preference number: 5 (lower is better) Translates to: SCLHSRVSPASVAGV*SPACGQAGVRVWSL Trigger: CAGGCTCCAGACCCGAACACCGGCCTGACCACAAGCTGGCGACCAAACCCCAGCAACGGATGCTGGTGACACCCGAGAATGAAGACAGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS GCA 90 bp | CTGTCTTCCATCCTGTCTTCATTCTCGGGTGTCACCAGCATCCGTTaGTGGGGTTTGGTCGCCAGCTTGTGGTCAGGCCGGTGTTCGGGT | + |
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Preference number: 5 (lower is better) Translates to: LSSILSSFSGVTSIR*WGLVASLWSGRCSG Trigger: ACCCGAACACCGGCCTGACCACAAGCTGGCGACCAAACCCCAGCAACGGATGCTGGTGACACCCGAGAATGAAGACAGGATGGAAGACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CCA 90 bp | GCTGGGGTTTGGTCGCCAGCTTGTGGTCAGGCCGGTGTTCGGGTCTaGAGCCTGGTCGAGTATCCAACTTGCAATCAGCTCGATACTTGC | + |
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Preference number: 5 (lower is better) Translates to: AGVWSPACGQAGVRV*SLVEYPTCNQLDTC Trigger: GCAAGTATCGAGCTGATTGCAAGTTGGATACTCGACCAGGCTCCAGACCCGAACACCGGCCTGACCACAAGCTGGCGACCAAACCCCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CCA 90 bp | TCTTCCATCCTGTCTTCATTCTCGGGTGTCACCAGCATCCGTTGCTaGGGTTTGGTCGCCAGCTTGTGGTCAGGCCGGTGTTCGGGTCTG | + |
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Preference number: 5 (lower is better) Translates to: SSILSSFSGVTSIRC*GLVASLWSGRCSGL Trigger: CAGACCCGAACACCGGCCTGACCACAAGCTGGCGACCAAACCCCAGCAACGGATGCTGGTGACACCCGAGAATGAAGACAGGATGGAAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR CAA 90 bp | CTTAGCTTATGTGGGTGCAGACTGCACACCACGATACCCCCAGGGCCCTCTCCAATCCGTTGCTGGGGTTaGGTCGCCAGCTTGTGGTCA | + |
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Preference number: 5 (lower is better) Translates to: LSLCGCRLHTTIPPGPSPIRCWG*VASLWS Trigger: TGACCACAAGCTGGCGACCAAACCCCAGCAACGGAT...TGGAGAGGGCCCTGGGGGTATCGTGGTGTGCAGTCTGCACCCACATAAGCTAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CCA 90 bp | TTTGGTCGCCAGCTTGTGGTCAGGCCGGTGTTCGGGTCTGGAGCCTaGTCGAGTATCCAACTTGCAATCAGCTCGATACTTGCCTTCCCC | + |
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Preference number: 5 (lower is better) Translates to: FGRQLVVRPVFGSGA*SSIQLAISSILAFP Trigger: GGGGAAGGCAAGTATCGAGCTGATTGCAAGTTGGATACTCGACCAGGCTCCAGACCCGAACACCGGCCTGACCACAAGCTGGCGACCAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR CAA 90 bp | CTCCTACCTGCCTACTTAGCTTATGTGGGTGCAGACTGCACACCACGATACCCCATGATGGAACGGTGGTaGACGGTCGCCAGGATGTCC | + |
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Preference number: 5 (lower is better) Translates to: LLPAYLAYVGADCTPRYPMMERW*TVARMS Trigger: GGACATCCTGGCGACCGTCAACCACCGTTCCATCAT...GGGGTATCGTGGTGTGCAGTCTGCACCCACATAAGCTAAGTAGGCAGGTAGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR CAA 90 bp | TCAGCTCCTACCTGCCTACTTAGCTTATGTGGGTGCAGACTGCACACCACGATAATCTTGACTGCCACATaGAACTTGAGGCGCTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: SAPTCLLSLCGCRLHTTIILTAT*NLRRSE Trigger: CTCAGAGCGCCTCAAGTTCAATGTGGCAGTCAAGAT...TATCGTGGTGTGCAGTCTGCACCCACATAAGCTAAGTAGGCAGGTAGGAGCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS-3UTR CAA 90 bp | CTTGCACCTGTGCCTTCTTCAGCTCCTACCTGCCTACTTAGCTTATGTGGGTGCTCAGTGGGTGTTTTCTaGCGGTCTATGATCTTGACT | + |
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Preference number: 5 (lower is better) Translates to: LAPVPSSAPTCLLSLCGCSVGVF*RSMILT Trigger: AGTCAAGATCATAGACCGCAAGAAAACACCCACTGA...GCACCCACATAAGCTAAGTAGGCAGGTAGGAGCTGAAGAAGGCACAGGTGCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CAA 72 bp | GTCACCAGCATCCGTTGCTGGGGTTTGGTCGCCAGCTaGTGGTCAGGCCGGTGTTCGGGTCTGGAGCCTGGT | + |
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Preference number: 6 (lower is better) Translates to: VTSIRCWGLVAS*WSGRCSGLEPG Trigger: ACCAGGCTCCAGACCCGAACACCGGCCTGACCACAAGCTGGCGACCAAACCCCAGCAACGGATGCTGGTGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CCA 72 bp | CATTCTCGGGTGTCACCAGCATCCGTTGCTGGGGTTTaGTCGCCAGCTTGTGGTCAGGCCGGTGTTCGGGTC | + |
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Preference number: 6 (lower is better) Translates to: HSRVSPASVAGV*SPACGQAGVRV Trigger: GACCCGAACACCGGCCTGACCACAAGCTGGCGACCAAACCCCAGCAACGGATGCTGGTGACACCCGAGAATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CAA 72 bp | TCATTCTCGGGTGTCACCAGCATCCGTTGCTGGGGTTaGGTCGCCAGCTTGTGGTCAGGCCGGTGTTCGGGT | + |
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Preference number: 6 (lower is better) Translates to: SFSGVTSIRCWG*VASLWSGRCSG Trigger: ACCCGAACACCGGCCTGACCACAAGCTGGCGACCAAACCCCAGCAACGGATGCTGGTGACACCCGAGAATGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CAA 90 bp | ATCCTGTCTTCATTCTCGGGTGTCACCAGCATCCGTTGCTGGGGTTaGGTCGCCAGCTTGTGGTCAGGCCGGTGTTCGGGTCTGGAGCCT | + |
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Preference number: 6 (lower is better) Translates to: ILSSFSGVTSIRCWG*VASLWSGRCSGLEP Trigger: AGGCTCCAGACCCGAACACCGGCCTGACCACAAGCTGGCGACCAAACCCCAGCAACGGATGCTGGTGACACCCGAGAATGAAGACAGGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CAA 90 bp | CCTGTCTTCCATCCTGTCTTCATTCTCGGGTGTCACCAGCATCCGTaGCTGGGGTTTGGTCGCCAGCTTGTGGTCAGGCCGGTGTTCGGG | + |
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Preference number: 6 (lower is better) Translates to: PVFHPVFILGCHQHP*LGFGRQLVVRPVFG Trigger: CCCGAACACCGGCCTGACCACAAGCTGGCGACCAAACCCCAGCAACGGATGCTGGTGACACCCGAGAATGAAGACAGGATGGAAGACAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS GCA 72 bp | ATCCTGTCTTCATTCTCGGGTGTCACCAGCATCCGTTaGTGGGGTTTGGTCGCCAGCTTGTGGTCAGGCCGG | + |
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Preference number: 6 (lower is better) Translates to: ILSSFSGVTSIR*WGLVASLWSGR Trigger: CCGGCCTGACCACAAGCTGGCGACCAAACCCCAGCAACGGATGCTGGTGACACCCGAGAATGAAGACAGGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CCA 72 bp | TGGTCGCCAGCTTGTGGTCAGGCCGGTGTTCGGGTCTaGAGCCTGGTCGAGTATCCAACTTGCAATCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: WSPACGQAGVRV*SLVEYPTCNQL Trigger: GAGCTGATTGCAAGTTGGATACTCGACCAGGCTCCAGACCCGAACACCGGCCTGACCACAAGCTGGCGACCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CCA 72 bp | CTGTCTTCATTCTCGGGTGTCACCAGCATCCGTTGCTaGGGTTTGGTCGCCAGCTTGTGGTCAGGCCGGTGT | + |
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Preference number: 6 (lower is better) Translates to: LSSFSGVTSIRC*GLVASLWSGRC Trigger: ACACCGGCCTGACCACAAGCTGGCGACCAAACCCCAGCAACGGATGCTGGTGACACCCGAGAATGAAGACAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CAA 72 bp | CATCCTGTCTTCATTCTCGGGTGTCACCAGCATCCGTaGCTGGGGTTTGGTCGCCAGCTTGTGGTCAGGCCG | + |
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Preference number: 6 (lower is better) Translates to: HPVFILGCHQHP*LGFGRQLVVRP Trigger: CGGCCTGACCACAAGCTGGCGACCAAACCCCAGCAACGGATGCTGGTGACACCCGAGAATGAAGACAGGATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CAA 90 bp | TGGTCAGGCCGGTGTTCGGGTCTGGAGCCTGGTCGAGTATCCAACTaGCAATCAGCTCGATACTTGCCTTCCCCCTCCCTCTTGAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: WSGRCSGLEPGRVSN*QSARYLPSPSLLKE Trigger: CTCCTTCAAGAGGGAGGGGGAAGGCAAGTATCGAGCTGATTGCAAGTTGGATACTCGACCAGGCTCCAGACCCGAACACCGGCCTGACCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CAA 72 bp | CGGTGTTCGGGTCTGGAGCCTGGTCGAGTATCCAACTaGCAATCAGCTCGATACTTGCCTTCCCCCTCCCTC | + |
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Preference number: 6 (lower is better) Translates to: RCSGLEPGRVSN*QSARYLPSPSL Trigger: GAGGGAGGGGGAAGGCAAGTATCGAGCTGATTGCAAGTTGGATACTCGACCAGGCTCCAGACCCGAACACCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS GCA 72 bp | GGTGTTCGGGTCTGGAGCCTGGTCGAGTATCCAACTTaGAATCAGCTCGATACTTGCCTTCCCCCTCCCTCT | + |
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Preference number: 6 (lower is better) Translates to: GVRVWSLVEYPT*NQLDTCLPPPS Trigger: AGAGGGAGGGGGAAGGCAAGTATCGAGCTGATTGCAAGTTGGATACTCGACCAGGCTCCAGACCCGAACACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CCA 72 bp | CAGCTTGTGGTCAGGCCGGTGTTCGGGTCTGGAGCCTaGTCGAGTATCCAACTTGCAATCAGCTCGATACTT | + |
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Preference number: 6 (lower is better) Translates to: QLVVRPVFGSGA*SSIQLAISSIL Trigger: AAGTATCGAGCTGATTGCAAGTTGGATACTCGACCAGGCTCCAGACCCGAACACCGGCCTGACCACAAGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CAA 90 bp | GGTCTGGAGCCTGGTCGAGTATCCAACTTGCAATCAGCTCGATACTaGCCTTCCCCCTCCCTCTTGAAGGAGGCAGAAGACATGGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: GLEPGRVSNLQSARY*PSPSLLKEAEDMAL Trigger: CAAAGCCATGTCTTCTGCCTCCTTCAAGAGGGAGGGGGAAGGCAAGTATCGAGCTGATTGCAAGTTGGATACTCGACCAGGCTCCAGACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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| CDS CAA 72 bp | CCTGGTCGAGTATCCAACTTGCAATCAGCTCGATACTaGCCTTCCCCCTCCCTCTTGAAGGAGGCAGAAGAC | + |
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Preference number: 6 (lower is better) Translates to: PGRVSNLQSARY*PSPSLLKEAED Trigger: GTCTTCTGCCTCCTTCAAGAGGGAGGGGGAAGGCAAGTATCGAGCTGATTGCAAGTTGGATACTCGACCAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055374.8 |
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