Pregenerated sensors for TSSC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045752Ensembl transcript IDs: ENSMUST00000060433.10, ENSMUST00000105920.8, ENSMUST00000133410.3, ENSMUST00000137856.2, ENSMUST00000147995.2, ENSMUST00000177841.8, ENSMUST00000208779.2
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | ATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCCCATCCGGAAGTGGTCTCTaGTCCGCTTCTTGCTGCCAT | + |
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Preference number: 2 (lower is better) Translates to: ILNTGAQRPSRSPDPQFPSGSGL*SASCCH Trigger: ATGGCAGCAAGAAGCGGAGCAGAGACCACTTCCGGA...TGGGAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105920.8 |
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| 3UTR-3UTR CCA 90 bp | TTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCTCCCTGTTCCGGAAGTaGTCTCTGCTCCGCTTCTTG | + |
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Preference number: 2 (lower is better) Translates to: FILNTGAQRPSRSPDPQFSLFRK*SLLRFL Trigger: CAAGAAGCGGAGCAGAGACCACTTCCGGAACAGGGA...GAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105920.8 |
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| 3UTR-3UTR CCA 90 bp | TTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCCGCTTCTTGCTGCCATaGAAACCAACAGCCTTCACA | + |
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Preference number: 2 (lower is better) Translates to: FILNTGAQRPSRSPDPQFRFLLP*KPTAFT Trigger: TGTGAAGGCTGTTGGTTTCCATGGCAGCAAGAAGCG...GAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105920.8 |
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| 3UTR TCA 72 bp | CCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTaGCCCACAATTCCCACAGTCTCTGCCAGAGCGGCT | + |
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Preference number: 3 (lower is better) Translates to: PKHWGTKAFEVP*PTIPTVSARAA Trigger: AGCCGCTCTGGCAGAGACTGTGGGAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000177841.8 |
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| 3UTR GCA 72 bp | CCCCAGGGTTACCGTCCCTGTTCCGGAAGTGGTCTCTaGTCCGCTTCTTGCTGCCATGGAAACCAACAGCCT | + |
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Preference number: 3 (lower is better) Translates to: PQGYRPCSGSGL*SASCCHGNQQP Trigger: AGGCTGTTGGTTTCCATGGCAGCAAGAAGCGGAGCAGAGACCACTTCCGGAACAGGGACGGTAACCCTGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105920.8 ENSMUST00000208779.2 |
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| 3UTR-3UTR CAA 90 bp | TTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCTCTCTGCTCCGCTTCTaGCTGCCATGGAAACCAACA | + |
|
Preference number: 3 (lower is better) Translates to: FILNTGAQRPSRSPDPQFSLLRF*LPWKPT Trigger: TGTTGGTTTCCATGGCAGCAAGAAGCGGAGCAGAGA...GAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105920.8 |
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| CDS-3UTR TCA 90 bp | CAGGGTTACCGTCCCTGTTCCGGAAGTGGTCTCTGCTCCGCTTCTTGCTGCCATCCGAGTCCGAGTCGCTaGGGGAGACGGTGTCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: QGYRPCSGSGLCSASCCHPSPSR*GRRCQK Trigger: CTTCTGACACCGTCTCCCTCAGCGACTCGGACTCGG...ATGGCAGCAAGAAGCGGAGCAGAGACCACTTCCGGAACAGGGACGGTAACCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105920.8 ENSMUST00000208779.2 |
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| CDS-3UTR CCA 90 bp | TTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCGGGCCGGAGTCCTCCTaGCCCTCCTCCGAAAGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: FILNTGAQRPSRSPDPQFGPESS*PSSESL Trigger: GAGGCTTTCGGAGGAGGGCCAGGAGGACTCCGGCCC...GAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000177841.8 |
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| CDS-3UTR TCA 90 bp | ATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCCCACCGAGTCCGAGTCGCTaGGGGAGACGGTGTCAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: ILNTGAQRPSRSPDPQFPPSPSR*GRRCQK Trigger: CTTCTGACACCGTCTCCCTCAGCGACTCGGACTCGG...TGGGAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | CAGGGTTACCGTCCCTGTTCCGGAAGTGGTCTCTGCTCCGCTTCTTGCTGCCATCTCATGCCTCGGAGGTaGAATGGCTGCACTGCAGTG | + |
|
Preference number: 4 (lower is better) Translates to: QGYRPCSGSGLCSASCCHLMPRR*NGCTAV Trigger: CACTGCAGTGCAGCCATTCCACCTCCGAGGCATGAG...ATGGCAGCAAGAAGCGGAGCAGAGACCACTTCCGGAACAGGGACGGTAACCCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105920.8 ENSMUST00000208779.2 |
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| CDS-3UTR TCA 90 bp | TTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCCCGAGTCCGAGTCGCTaGGGGAGACGGTGTCAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: FILNTGAQRPSRSPDPQFPSPSR*GRRCQK Trigger: CTTCTGACACCGTCTCCCTCAGCGACTCGGACTCGG...GAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | CAGGGTTACCGTCCCTGTTCCGGAAGTGGTCTCTGCTCCGCTTCTTGCTGCCATCTCCGAAAGCCTCTCTaGGGACAACACTTGGACCTC | + |
|
Preference number: 4 (lower is better) Translates to: QGYRPCSGSGLCSASCCHLRKPL*GQHLDL Trigger: GAGGTCCAAGTGTTGTCCCCAGAGAGGCTTTCGGAG...ATGGCAGCAAGAAGCGGAGCAGAGACCACTTCCGGAACAGGGACGGTAACCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105920.8 ENSMUST00000208779.2 |
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| CDS-3UTR CCA 90 bp | ATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCCCATCTGGCTGTCCCTGGTaGCCACTCCATTCCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: ILNTGAQRPSRSPDPQFPSGCPW*PLHSSA Trigger: GGCTGAGGAATGGAGTGGCCACCAGGGACAGCCAGA...TGGGAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR TCA 90 bp | TTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAACCGAGTCCGAGTCGCTaGGGGAGACGGTGTCAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: LFILNTGAQRPSRSPDPQPSPSR*GRRCQK Trigger: CTTCTGACACCGTCTCCCTCAGCGACTCGGACTCGG...TTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000177841.8 |
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| CDS-3UTR GCA 90 bp | TTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCGGGCCAGTGTTCCCATaGACTCTGCTCAGGCCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: FILNTGAQRPSRSPDPQFGPVFP*TLLRPL Trigger: AAGGGGCCTGAGCAGAGTGCATGGGAACACTGGCCC...GAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | CAGGGTTACCGTCCCTGTTCCGGAAGTGGTCTCTGCTCCGCTTCTTGCTGCCATATGCTGTGGCTGCGCTaGGAGAAGGTAGAACTCATG | + |
|
Preference number: 4 (lower is better) Translates to: QGYRPCSGSGLCSASCCHMLWLR*EKVELM Trigger: CATGAGTTCTACCTTCTCCCAGCGCAGCCACAGCAT...ATGGCAGCAAGAAGCGGAGCAGAGACCACTTCCGGAACAGGGACGGTAACCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105920.8 ENSMUST00000208779.2 |
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| CDS-3UTR CCA 90 bp | ACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCCCACAGTCTCATGCTGTGGCTGCGCTaGGAGAAGGTAGAACTCATG | + |
|
Preference number: 4 (lower is better) Translates to: TLGHKGLRGPLTHNSHSLMLWLR*EKVELM Trigger: CATGAGTTCTACCTTCTCCCAGCGCAGCCACAGCAT...GAGACTGTGGGAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | ACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCCCACAGTCTCCATTGTCACTCACACTaGTTTGGGGAGCAGAGCACG | + |
|
Preference number: 4 (lower is better) Translates to: TLGHKGLRGPLTHNSHSLHCHSH*FGEQST Trigger: CGTGCTCTGCTCCCCAAACCAGTGTGAGTGACAATG...GAGACTGTGGGAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | TTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCAGGTACCACCACCTCTaGCTGTCCCTGGTGGCCACT | + |
|
Preference number: 4 (lower is better) Translates to: FILNTGAQRPSRSPDPQFRYHHL*LSLVAT Trigger: AGTGGCCACCAGGGACAGCCAGAGGTGGTGGTACCT...GAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR GCA 90 bp | TTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAAGGGCCAGTGTTCCCATaGACTCTGCTCAGGCCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: LFILNTGAQRPSRSPDPQGPVFP*TLLRPL Trigger: AAGGGGCCTGAGCAGAGTGCATGGGAACACTGGCCC...TTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | CAGGGTTACCGTCCCTGTTCCGGAAGTGGTCTCTGCTCCGCTTCTTGCTGCCATCAATCAAAGATGCTGTaGCTGCGCTGGGAGAAGGTA | + |
|
Preference number: 4 (lower is better) Translates to: QGYRPCSGSGLCSASCCHQSKML*LRWEKV Trigger: TACCTTCTCCCAGCGCAGCCACAGCATCTTTGATTG...ATGGCAGCAAGAAGCGGAGCAGAGACCACTTCCGGAACAGGGACGGTAACCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105920.8 ENSMUST00000208779.2 |
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| CDS-3UTR CCA 90 bp | TTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCACCTCTGGCTGTCCCTaGTGGCCACTCCATTCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: FILNTGAQRPSRSPDPQFTSGCP*WPLHSS Trigger: TGAGGAATGGAGTGGCCACCAGGGACAGCCAGAGGT...GAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | ACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCCCACAGTCTCCGCTTCTTGCTGCCATaGAAACCAACAGCCTTCACA | + |
|
Preference number: 4 (lower is better) Translates to: TLGHKGLRGPLTHNSHSLRFLLP*KPTAFT Trigger: TGTGAAGGCTGTTGGTTTCCATGGCAGCAAGAAGCG...GAGACTGTGGGAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR GCA 90 bp | TTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATGTTCCCATGCACTCTaGTCAGGCCCCTTGCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: LFILNTGAQRPSRSPDPQCSHAL*SGPLLE Trigger: CTCCAGCAAGGGGCCTGAGCAGAGTGCATGGGAACA...TTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | TTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAACTCATGCCTCGGAGGTaGAATGGCTGCACTGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: LFILNTGAQRPSRSPDPQLMPRR*NGCTAV Trigger: CACTGCAGTGCAGCCATTCCACCTCCGAGGCATGAG...TTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | ATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCCCAATGCTGTGGCTGCGCTaGGAGAAGGTAGAACTCATG | + |
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Preference number: 4 (lower is better) Translates to: ILNTGAQRPSRSPDPQFPMLWLR*EKVELM Trigger: CATGAGTTCTACCTTCTCCCAGCGCAGCCACAGCAT...TGGGAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | TTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAAACCTCTGGCTGTCCCTaGTGGCCACTCCATTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: LFILNTGAQRPSRSPDPQTSGCP*WPLHSS Trigger: TGAGGAATGGAGTGGCCACCAGGGACAGCCAGAGGT...TTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | TTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAACTCCGAAAGCCTCTCTaGGGACAACACTTGGACCTC | + |
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Preference number: 4 (lower is better) Translates to: LFILNTGAQRPSRSPDPQLRKPL*GQHLDL Trigger: GAGGTCCAAGTGTTGTCCCCAGAGAGGCTTTCGGAG...TTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | ATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCCCACAATCAAAGATGCTGTaGCTGCGCTGGGAGAAGGTA | + |
|
Preference number: 4 (lower is better) Translates to: ILNTGAQRPSRSPDPQFPQSKML*LRWEKV Trigger: TACCTTCTCCCAGCGCAGCCACAGCATCTTTGATTG...TGGGAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | TTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATCCCTGTTCCGGAAGTaGTCTCTGCTCCGCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: LFILNTGAQRPSRSPDPQSLFRK*SLLRFL Trigger: CAAGAAGCGGAGCAGAGACCACTTCCGGAACAGGGA...TTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | ATATTCCAAACGTTTATTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGGGCCGGAGTCCTCCTaGCCCTCCTCCGAAAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: IFQTFIIHPKHWGTKAFEGPESS*PSSESL Trigger: GAGGCTTTCGGAGGAGGGCCAGGAGGACTCCGGCCC...CTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAATAAACGTTTGGAATAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | TTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAACATTGTCACTCACACTaGTTTGGGGAGCAGAGCACG | + |
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Preference number: 4 (lower is better) Translates to: LFILNTGAQRPSRSPDPQHCHSH*FGEQST Trigger: CGTGCTCTGCTCCCCAAACCAGTGTGAGTGACAATG...TTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | TTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCGATTGCTCTGCTCACTaGCTTCAGACACATCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: FILNTGAQRPSRSPDPQFDCSAH*LQTHPP Trigger: TGGAGGATGTGTCTGAAGCCAGTGAGCAGAGCAATC...GAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | TTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAACGCTTCTTGCTGCCATaGAAACCAACAGCCTTCACA | + |
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Preference number: 4 (lower is better) Translates to: LFILNTGAQRPSRSPDPQRFLLP*KPTAFT Trigger: TGTGAAGGCTGTTGGTTTCCATGGCAGCAAGAAGCG...TTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR TCA 90 bp | TTCAAGAAATATTCCAAACGTTTATTATTCATCCTAAACACTGGGGCACAAAGGCCCCTTGCTGGAGTCTaGCTTGGGGGAGTCACGGGC | + |
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Preference number: 4 (lower is better) Translates to: FKKYSKRLLFILNTGAQRPLAGV*LGGVTG Trigger: GCCCGTGACTCCCCCAAGTCAGACTCCAGCAAGGGG...CCTTTGTGCCCCAGTGTTTAGGATGAATAATAAACGTTTGGAATATTTCTTGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000060433.10 |
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| CDS-3UTR CCA 90 bp | AAATATTCCAAACGTTTATTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGTCTGGCTGTCCCTGGTaGCCACTCCATTCCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: KYSKRLLFILNTGAQRPSSGCPW*PLHSSA Trigger: GGCTGAGGAATGGAGTGGCCACCAGGGACAGCCAGA...CGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAATAAACGTTTGGAATATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR GCA 90 bp | AAATATTCCAAACGTTTATTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGTGTTCCCATGCACTCTaGTCAGGCCCCTTGCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: KYSKRLLFILNTGAQRPSCSHAL*SGPLLE Trigger: CTCCAGCAAGGGGCCTGAGCAGAGTGCATGGGAACA...CGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAATAAACGTTTGGAATATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | ATATTCCAAACGTTTATTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGCTCCGAAAGCCTCTCTaGGGACAACACTTGGACCTC | + |
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Preference number: 4 (lower is better) Translates to: IFQTFIIHPKHWGTKAFELRKPL*GQHLDL Trigger: GAGGTCCAAGTGTTGTCCCCAGAGAGGCTTTCGGAG...CTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAATAAACGTTTGGAATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000177841.8 |
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| CDS-3UTR GCA 90 bp | AAATATTCCAAACGTTTATTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGTCCGGAAGTGGTCTCTaGTCCGCTTCTTGCTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: KYSKRLLFILNTGAQRPSSGSGL*SASCCH Trigger: ATGGCAGCAAGAAGCGGAGCAGAGACCACTTCCGGA...CGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAATAAACGTTTGGAATATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | TTCAAGAAATATTCCAAACGTTTATTATTCATCCTAAACACTGGGGCACAAAGGAGGTACCACCACCTCTaGCTGTCCCTGGTGGCCACT | + |
|
Preference number: 4 (lower is better) Translates to: FKKYSKRLLFILNTGAQRRYHHL*LSLVAT Trigger: AGTGGCCACCAGGGACAGCCAGAGGTGGTGGTACCT...CCTTTGTGCCCCAGTGTTTAGGATGAATAATAAACGTTTGGAATATTTCTTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060433.10 |
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| CDS-3UTR GCA 90 bp | TTCAAGAAATATTCCAAACGTTTATTATTCATCCTAAACACTGGGGCACAAAGGGGGCAGCATCACGATTaGTCTGCTCACTGGCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: FKKYSKRLLFILNTGAQRGQHHD*SAHWLQ Trigger: CTGAAGCCAGTGAGCAGAGCAATCGTGATGCTGCCC...CCTTTGTGCCCCAGTGTTTAGGATGAATAATAAACGTTTGGAATATTTCTTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060433.10 |
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| CDS-3UTR GCA 90 bp | TTCAAGAAATATTCCAAACGTTTATTATTCATCCTAAACACTGGGGCACAAAGGTCCGGAAGTGGTCTCTaGTCCGCTTCTTGCTGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: FKKYSKRLLFILNTGAQRSGSGL*SASCCH Trigger: ATGGCAGCAAGAAGCGGAGCAGAGACCACTTCCGGA...CCTTTGTGCCCCAGTGTTTAGGATGAATAATAAACGTTTGGAATATTTCTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060433.10 |
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| CDS-3UTR CCA 90 bp | AAATATTCCAAACGTTTATTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGCAATCAAAGATGCTGTaGCTGCGCTGGGAGAAGGTA | + |
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Preference number: 4 (lower is better) Translates to: KYSKRLLFILNTGAQRPSQSKML*LRWEKV Trigger: TACCTTCTCCCAGCGCAGCCACAGCATCTTTGATTG...CGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAATAAACGTTTGGAATATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | AAATATTCCAAACGTTTATTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGGATTGCTCTGCTCACTaGCTTCAGACACATCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: KYSKRLLFILNTGAQRPSDCSAH*LQTHPP Trigger: TGGAGGATGTGTCTGAAGCCAGTGAGCAGAGCAATC...CGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAATAAACGTTTGGAATATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CCA 90 bp | TTCAAGAAATATTCCAAACGTTTATTATTCATCCTAAACACTGGGGCACAAAGGTCCCTGTTCCGGAAGTaGTCTCTGCTCCGCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: FKKYSKRLLFILNTGAQRSLFRK*SLLRFL Trigger: CAAGAAGCGGAGCAGAGACCACTTCCGGAACAGGGA...CCTTTGTGCCCCAGTGTTTAGGATGAATAATAAACGTTTGGAATATTTCTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060433.10 |
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| CDS TCA 90 bp | GGGCCAGTGTTCCCATGCACTCTGCTCAGGCCCCTTGCTGGAGTCTaGCTTGGGGGAGTCACGGGCCGCCTGAAGCTGCCATTGTCACTC | + |
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Preference number: 5 (lower is better) Translates to: GPVFPCTLLRPLAGV*LGGVTGRLKLPLSL Trigger: GAGTGACAATGGCAGCTTCAGGCGGCCCGTGACTCCCCCAAGTCAGACTCCAGCAAGGGGCCTGAGCAGAGTGCATGGGAACACTGGCCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000060433.10 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 |
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| CDS CCA 90 bp | CCTAGTCGGGCCAGTGTTCCCATGCACTCTGCTCAGGCCCCTTGCTaGAGTCTGACTTGGGGGAGTCACGGGCCGCCTGAAGCTGCCATT | + |
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Preference number: 5 (lower is better) Translates to: PSRASVPMHSAQAPC*SLTWGSHGPPEAAI Trigger: AATGGCAGCTTCAGGCGGCCCGTGACTCCCCCAAGTCAGACTCCAGCAAGGGGCCTGAGCAGAGTGCATGGGAACACTGGCCCGACTAGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000060433.10 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 |
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| CDS GCA 90 bp | CTATGGGGCACTGGTTTGGGGAGCAGAGCACGGTGCCTGCCGGGCTaGACTCTCCAGACAATCAAAGATGCTGTGGCTGCGCTGGGAGAA | + |
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Preference number: 5 (lower is better) Translates to: LWGTGLGSRARCLPG*TLQTIKDAVAALGE Trigger: TTCTCCCAGCGCAGCCACAGCATCTTTGATTGTCTGGAGAGTGCAGCCCGGCAGGCACCGTGCTCTGCTCCCCAAACCAGTGCCCCATAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105920.8 ENSMUST00000208779.2 |
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| CDS CCA 90 bp | TCAGGATGGGCAGCTTCTGAAGGTACCACCACCTCTGGCTGTCCCTaGTGGCCACTCCATTCCTCAGCCTCAGGTCCAGCGAGATGGGCT | + |
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Preference number: 5 (lower is better) Translates to: SGWAASEGTTTSGCP*WPLHSSASGPARWA Trigger: AGCCCATCTCGCTGGACCTGAGGCTGAGGAATGGAGTGGCCACCAGGGACAGCCAGAGGTGGTGGTACCTTCAGAAGCTGCCCATCCTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CAA 90 bp | CAGGGTTACCGTCCCTGTTCCGGAAGTGGTCTCTGCTCCGCTTCTTGCTGCCATCTATGGGGCACTGGTTaGGGGAGCAGAGCACGGTGC | + |
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Preference number: 5 (lower is better) Translates to: QGYRPCSGSGLCSASCCHLWGTG*GSRARC Trigger: GCACCGTGCTCTGCTCCCCAAACCAGTGCCCCATAG...ATGGCAGCAAGAAGCGGAGCAGAGACCACTTCCGGAACAGGGACGGTAACCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105920.8 ENSMUST00000208779.2 |
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| CDS GCA 90 bp | GTCACTCACACTGGTTTGGGGAGCAGAGCACGGTGCCTGCCGGGCTaGACTCTCCAGACAATCAAAGATGCTGTGGCTGCGCTGGGAGAA | + |
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Preference number: 5 (lower is better) Translates to: VTHTGLGSRARCLPG*TLQTIKDAVAALGE Trigger: TTCTCCCAGCGCAGCCACAGCATCTTTGATTGTCTGGAGAGTGCAGCCCGGCAGGCACCGTGCTCTGCTCCCCAAACCAGTGTGAGTGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000060433.10 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 |
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| CDS CCA 90 bp | AGTGTTCCCATGCACTCTGCTCAGGCCCCTTGCTGGAGTCTGACTTaGGGGAGTCACGGGCCGCCTGAAGCTGCCATTGTCACTCACACT | + |
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Preference number: 5 (lower is better) Translates to: SVPMHSAQAPCWSLT*GSHGPPEAAIVTHT Trigger: AGTGTGAGTGACAATGGCAGCTTCAGGCGGCCCGTGACTCCCCCAAGTCAGACTCCAGCAAGGGGCCTGAGCAGAGTGCATGGGAACACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000060433.10 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 |
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| CDS-3UTR CAA 90 bp | ACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCCCACAGTCTCGTCACTCACACTGGTTaGGGGAGCAGAGCACGGTGC | + |
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Preference number: 5 (lower is better) Translates to: TLGHKGLRGPLTHNSHSLVTHTG*GSRARC Trigger: GCACCGTGCTCTGCTCCCCAAACCAGTGTGAGTGAC...GAGACTGTGGGAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS CCA 90 bp | CACGGTGCCTGCCGGGCTGCACTCTCCAGACAATCAAAGATGCTGTaGCTGCGCTGGGAGAAGGTAGAACTCATGCCTCGGAGGTGGAAT | + |
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Preference number: 5 (lower is better) Translates to: HGACRAALSRQSKML*LRWEKVELMPRRWN Trigger: ATTCCACCTCCGAGGCATGAGTTCTACCTTCTCCCAGCGCAGCCACAGCATCTTTGATTGTCTGGAGAGTGCAGCCCGGCAGGCACCGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 ENSMUST00000208779.2 |
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| CDS CCA 90 bp | TGCCGGGCTGCACTCTCCAGACAATCAAAGATGCTGTGGCTGCGCTaGGAGAAGGTAGAACTCATGCCTCGGAGGTGGAATGGCTGCACT | + |
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Preference number: 5 (lower is better) Translates to: CRAALSRQSKMLWLR*EKVELMPRRWNGCT Trigger: AGTGCAGCCATTCCACCTCCGAGGCATGAGTTCTACCTTCTCCCAGCGCAGCCACAGCATCTTTGATTGTCTGGAGAGTGCAGCCCGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 ENSMUST00000208779.2 |
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| CDS CCA 90 bp | CCGTCCCTGTTCCGGAAGTGGTCTCTGCTCCGCTTCTTGCTGCCATaGAAACCAACAGCCTTCACACCTATGGGGCCTGATGAGGACTCA | + |
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Preference number: 5 (lower is better) Translates to: PSLFRKWSLLRFLLP*KPTAFTPMGPDEDS Trigger: TGAGTCCTCATCAGGCCCCATAGGTGTGAAGGCTGTTGGTTTCCATGGCAGCAAGAAGCGGAGCAGAGACCACTTCCGGAACAGGGACGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CAA 90 bp | TTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCCTCTGCTCAGGCCCCTaGCTGGAGTCTGACTTGGGG | + |
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Preference number: 5 (lower is better) Translates to: FILNTGAQRPSRSPDPQFLCSGP*LESDLG Trigger: CCCCAAGTCAGACTCCAGCAAGGGGCCTGAGCAGAG...GAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS CCA 90 bp | TGCTCCGCTTCTTGCTGCCATGGAAACCAACAGCCTTCACACCTATaGGGCCTGATGAGGACTCAGGATGGGCAGCTTCTGAAGGTACCA | + |
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Preference number: 5 (lower is better) Translates to: CSASCCHGNQQPSHL*GLMRTQDGQLLKVP Trigger: TGGTACCTTCAGAAGCTGCCCATCCTGAGTCCTCATCAGGCCCCATAGGTGTGAAGGCTGTTGGTTTCCATGGCAGCAAGAAGCGGAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CAA 90 bp | ATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAATTCCCACGCCTGAAGCTGCCATaGTCACTCACACTGGTTTGG | + |
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Preference number: 5 (lower is better) Translates to: ILNTGAQRPSRSPDPQFPRLKLP*SLTLVW Trigger: CCAAACCAGTGTGAGTGACAATGGCAGCTTCAGGCG...TGGGAATTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CAA 90 bp | TTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAACGCCTGAAGCTGCCATaGTCACTCACACTGGTTTGG | + |
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Preference number: 5 (lower is better) Translates to: LFILNTGAQRPSRSPDPQRLKLP*SLTLVW Trigger: CCAAACCAGTGTGAGTGACAATGGCAGCTTCAGGCG...TTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS-3UTR CAA 90 bp | TTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGAGGTCCCCTGACCCACAACTGTCCCTCACTGGTTaGGTGAAGACCACTCTTCCC | + |
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Preference number: 5 (lower is better) Translates to: LFILNTGAQRPSRSPDPQLSLTG*VKTTLP Trigger: GGGAAGAGTGGTCTTCACCAAACCAGTGAGGGACAG...TTGTGGGTCAGGGGACCTCGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS CCA 90 bp | GATTGCTCTGCTCACTGGCTTCAGACACATCCTCCAGACTGTATTTaGTCCAACGCTCAGGGTGTGACACATAGTCAGGGACTGGGAGTA | + |
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Preference number: 5 (lower is better) Translates to: DCSAHWLQTHPPDCI*SNAQGVTHSQGLGV Trigger: TACTCCCAGTCCCTGACTATGTGTCACACCCTGAGCGTTGGACCAAATACAGTCTGGAGGATGTGTCTGAAGCCAGTGAGCAGAGCAATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000060433.10 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 |
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| CDS-3UTR CAA 90 bp | TTCAAGAAATATTCCAAACGTTTATTATTCATCCTAAACACTGGGGCACAAAGGGTCACTCACACTGGTTaGGGGAGCAGAGCACGGTGC | + |
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Preference number: 5 (lower is better) Translates to: FKKYSKRLLFILNTGAQRVTHTG*GSRARC Trigger: GCACCGTGCTCTGCTCCCCAAACCAGTGTGAGTGAC...CCTTTGTGCCCCAGTGTTTAGGATGAATAATAAACGTTTGGAATATTTCTTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060433.10 |
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| CDS-3UTR CAA 90 bp | AAATATTCCAAACGTTTATTATTCATCCTAAACACTGGGGCACAAAGGCCTTCGCTGTCCCTCACTGGTTaGGTGAAGACCACTCTTCCC | + |
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Preference number: 5 (lower is better) Translates to: KYSKRLLFILNTGAQRPSLSLTG*VKTTLP Trigger: GGGAAGAGTGGTCTTCACCAAACCAGTGAGGGACAG...CGAAGGCCTTTGTGCCCCAGTGTTTAGGATGAATAATAAACGTTTGGAATATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS TCA 72 bp | AGCCTCCAGGCCAGCCTCTGTCTCCGCCATACGACCTaGCACCCGTCCCACAGCCGGACGGGAGGCCTCGCG | + |
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Preference number: 6 (lower is better) Translates to: SLQASLCLRHTT*HPSHSRTGGLA Trigger: CGCGAGGCCTCCCGTCCGGCTGTGGGACGGGTGTCAGGTCGTATGGCGGAGACAGAGGCTGGCCTGGAGGCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133410.3 |
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| CDS GCA 72 bp | CGGGCCAGTGTTCCCATGCACTCTGCTCAGGCCCCTTaGTGGAGTCTGACTTGGGGGAGTCACGGGCCGCCT | + |
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Preference number: 6 (lower is better) Translates to: RASVPMHSAQAP*WSLTWGSHGPP Trigger: AGGCGGCCCGTGACTCCCCCAAGTCAGACTCCAGCAAGGGGCCTGAGCAGAGTGCATGGGAACACTGGCCCG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000060433.10 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 |
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| CDS TCA 72 bp | TTCCCATGCACTCTGCTCAGGCCCCTTGCTGGAGTCTaGCTTGGGGGAGTCACGGGCCGCCTGAAGCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: FPCTLLRPLAGV*LGGVTGRLKLP Trigger: TGGCAGCTTCAGGCGGCCCGTGACTCCCCCAAGTCAGACTCCAGCAAGGGGCCTGAGCAGAGTGCATGGGAA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000060433.10 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 |
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| CDS CCA 72 bp | GGGAGACGGTGTCAGAAGGCAGGGTGTCATCCTCGGTaGGTTCATCAGCCTCCAGGCCAGCCTCTGTCTCCG | + |
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Preference number: 6 (lower is better) Translates to: GRRCQKAGCHPR*VHQPPGQPLSP Trigger: CGGAGACAGAGGCTGGCCTGGAGGCTGATGAACCCACCGAGGATGACACCCTGCCTTCTGACACCGTCTCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 ENSMUST00000208779.2 |
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| CDS CCA 72 bp | CTGCGCTGGGAGAAGGTAGAACTCATGCCTCGGAGGTaGAATGGCTGCACTGCAGTGGTGAGGGTGCCCGTG | + |
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Preference number: 6 (lower is better) Translates to: LRWEKVELMPRR*NGCTAVVRVPV Trigger: CACGGGCACCCTCACCACTGCAGTGCAGCCATTCCACCTCCGAGGCATGAGTTCTACCTTCTCCCAGCGCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 ENSMUST00000208779.2 |
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| CDS CCA 72 bp | GCAGCTTCTGAAGGTACCACCACCTCTGGCTGTCCCTaGTGGCCACTCCATTCCTCAGCCTCAGGTCCAGCG | + |
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Preference number: 6 (lower is better) Translates to: AASEGTTTSGCP*WPLHSSASGPA Trigger: CGCTGGACCTGAGGCTGAGGAATGGAGTGGCCACCAGGGACAGCCAGAGGTGGTGGTACCTTCAGAAGCTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS TCA 72 bp | TTGCTGGAGTCTGACTTGGGGGAGTCACGGGCCGCCTaGAGCTGCCATTGTCACTCACACTGGTTTGGGGAG | + |
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Preference number: 6 (lower is better) Translates to: LLESDLGESRAA*SCHCHSHWFGE Trigger: CTCCCCAAACCAGTGTGAGTGACAATGGCAGCTTCAGGCGGCCCGTGACTCCCCCAAGTCAGACTCCAGCAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000060433.10 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 |
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| CDS GCA 72 bp | TCACTCACACTGGTTTGGGGAGCAGAGCACGGTGCCTaGCGGGCTGCACTCTCCAGACAATCAAAGATGCTG | + |
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Preference number: 6 (lower is better) Translates to: SLTLVWGAEHGA*RAALSRQSKML Trigger: CAGCATCTTTGATTGTCTGGAGAGTGCAGCCCGGCAGGCACCGTGCTCTGCTCCCCAAACCAGTGTGAGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000060433.10 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 |
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| CDS CCA 72 bp | TGGCCCTCCTCCGAAAGCCTCTCTGGGGACAACACTTaGACCTCCACACCACTAGGTAAGCTAAGGTCCGAG | + |
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Preference number: 6 (lower is better) Translates to: WPSSESLSGDNT*TSTPLGKLRSE Trigger: CTCGGACCTTAGCTTACCTAGTGGTGTGGAGGTCCAAGTGTTGTCCCCAGAGAGGCTTTCGGAGGAGGGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 ENSMUST00000208779.2 |
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| CDS CCA 72 bp | TGCCGGGCTGCACTCTCCAGACAATCAAAGATGCTGTaGCTGCGCTGGGAGAAGGTAGAACTCATGCCTCGG | + |
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Preference number: 6 (lower is better) Translates to: CRAALSRQSKML*LRWEKVELMPR Trigger: CCGAGGCATGAGTTCTACCTTCTCCCAGCGCAGCCACAGCATCTTTGATTGTCTGGAGAGTGCAGCCCGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060433.10 ENSMUST00000105920.8 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 ENSMUST00000208779.2 |
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| CDS GCA 72 bp | CGTCCCTGTTCCGGAAGTGGTCTCTGCTCCGCTTCTTaGTGCCATGGAAACCAACAGCCTTCACACCTATGG | + |
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Preference number: 6 (lower is better) Translates to: RPCSGSGLCSAS*CHGNQQPSHLW Trigger: CCATAGGTGTGAAGGCTGTTGGTTTCCATGGCAGCAAGAAGCGGAGCAGAGACCACTTCCGGAACAGGGACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS CCA 72 bp | TCTTGCTGCCATGGAAACCAACAGCCTTCACACCTATaGGGCCTGATGAGGACTCAGGATGGGCAGCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: SCCHGNQQPSHL*GLMRTQDGQLL Trigger: CAGAAGCTGCCCATCCTGAGTCCTCATCAGGCCCCATAGGTGTGAAGGCTGTTGGTTTCCATGGCAGCAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS CCA 72 bp | TTCCGGAAGTGGTCTCTGCTCCGCTTCTTGCTGCCATaGAAACCAACAGCCTTCACACCTATGGGGCCTGAT | + |
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Preference number: 6 (lower is better) Translates to: FRKWSLLRFLLP*KPTAFTPMGPD Trigger: ATCAGGCCCCATAGGTGTGAAGGCTGTTGGTTTCCATGGCAGCAAGAAGCGGAGCAGAGACCACTTCCGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060433.10 ENSMUST00000177841.8 |
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| CDS TCA 72 bp | ATCCTCCAGACTGTATTTGGTCCAACGCTCAGGGTGTaGCACATAGTCAGGGACTGGGAGTACCCTAGTCGG | + |
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Preference number: 6 (lower is better) Translates to: ILQTVFGPTLRV*HIVRDWEYPSR Trigger: CCGACTAGGGTACTCCCAGTCCCTGACTATGTGTCACACCCTGAGCGTTGGACCAAATACAGTCTGGAGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000060433.10 ENSMUST00000133410.3 ENSMUST00000137856.2 ENSMUST00000147995.2 ENSMUST00000177841.8 |
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| CDS GCA 72 bp | GTTAAAGGGTATCCTAGCGCGCACAGATACAGGAGCTaGAGGTTAGGTGGGGTTAAGGAGAGAGTCAACCAT | + |
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Preference number: 6 (lower is better) Translates to: VKGYPSAHRYRS*RLGGVKERVNH Trigger: ATGGTTGACTCTCTCCTTAACCCCACCTAACCTGCAGCTCCTGTATCTGTGCGCGCTAGGATACCCTTTAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133410.3 |
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