RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TSR3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000015126

Ensembl transcript IDs: ENSMUST00000063574.7

Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp CAGGACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACTGCCAGACGGGCCAGTTTaGGGCCCGTGCAGCGCTTGG +
Preference number: 4 (lower is better)
Translates to: QDTKQGCPSRPVHPQVLLPDGPV*GPCSAW
Trigger: CCAAGCGCTGCACGGGCCGCAAACTGGCCCGTCTGG...CAGTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGTCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR CCA 90 bp GGCAGGACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACGGCCCGTGCAGCGCTTaGGGTCGCAGTGACCAAGCT +
Preference number: 4 (lower is better)
Translates to: GRTLNKVVPAGPSIPRSYGPCSA*GRSDQA
Trigger: AGCTTGGTCACTGCGACCCCAAGCGCTGCACGGGCC...GTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGTCCTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR GCA 90 bp GACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACTGCCACCAGTTTGCGGCCCGTaGAGCGCTTGGGGTCGCAGT +
Preference number: 4 (lower is better)
Translates to: DTKQGCPSRPVHPQVLLPPVCGP*SAWGRS
Trigger: ACTGCGACCCCAAGCGCTGCACGGGCCGCAAACTGG...TGGCAGTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR TCA 90 bp CTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACTGCCACTTCCGCTTGGGGTCGCAGTaGCCAAGCTCCCACATAGCC +
Preference number: 4 (lower is better)
Translates to: LNKVVPAGPSIPRSYCHFRLGSQ*PSSHIA
Trigger: GGCTATGTGGGAGCTTGGTCACTGCGACCCCAAGCG...GAAGTGGCAGTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR CCA 90 bp AGGCAGGACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTAAGACCGCCAAACCTTTaGCTCAGGCGCAGGCAGCGC +
Preference number: 4 (lower is better)
Translates to: RQDTKQGCPSRPVHPQVLRPPNL*LRRRQR
Trigger: GCGCTGCCTGCGCCTGAGCCAAAGGTTTGGCGGTCT...TAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGTCCTGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR TCA 90 bp CAGGACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACTGCCCAGGAGCAGTCTATaGCTGCGACCCCTGACTGTG +
Preference number: 4 (lower is better)
Translates to: QDTKQGCPSRPVHPQVLLPRSSL*LRPLTV
Trigger: CACAGTCAGGGGTCGCAGTCATAGACTGCTCCTGGG...CAGTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR GCA 90 bp ACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACTGCCACTACCCCTGTTCAGCCTaGAACACCTCCTCCGGGCCA +
Preference number: 4 (lower is better)
Translates to: TLNKVVPAGPSIPRSYCHYPCSA*NTSSGP
Trigger: TGGCCCGGAGGAGGTGTTGCAGGCTGAACAGGGGTA...GTGGCAGTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR CCA 90 bp CAGGACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACTGGTACTCAGTGCCTACTaGGCTGAGCACCAGACCGCC +
Preference number: 4 (lower is better)
Translates to: QDTKQGCPSRPVHPQVLLVLSAY*AEHQTA
Trigger: GGCGGTCTGGTGCTCAGCCCAGTAGGCACTGAGTAC...CAGTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR TCA 90 bp CTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACTGCCACTTCTATGACTGCGACCCCTaGCTGTGCCACCAGCTGTCT +
Preference number: 4 (lower is better)
Translates to: LNKVVPAGPSIPRSYCHFYDCDP*LCHQLS
Trigger: AGACAGCTGGTGGCACAGTCAGGGGTCGCAGTCATA...GAAGTGGCAGTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR TCA 90 bp ACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACTGCCACGTGGAGTCTCTGGCTTaGGCCTCTTGTTCTGGGGTC +
Preference number: 4 (lower is better)
Translates to: TLNKVVPAGPSIPRSYCHVESLA*ASCSGV
Trigger: GACCCCAGAACAAGAGGCTCAAGCCAGAGACTCCAC...GTGGCAGTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR TCA 90 bp GACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACTGCCACTCCCTCGCATCTTCTaGAAGGGTGTGTCGTCCAGT +
Preference number: 4 (lower is better)
Translates to: DTKQGCPSRPVHPQVLLPLPRIF*KGVSSS
Trigger: ACTGGACGACACACCCTTTCAGAAGATGCGAGGGAG...TGGCAGTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR GCA 90 bp CAGGACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACTGCCACACAGGAAAGTTTaGAGGGCCGGCCATAGTTTA +
Preference number: 4 (lower is better)
Translates to: QDTKQGCPSRPVHPQVLLPHRKV*RAGHSL
Trigger: TAAACTATGGCCGGCCCTGCAAACTTTCCTGTGTGG...CAGTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR GCA 90 bp ACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACTGCCACTCAGAATCTTCACTGTaGTCCTCAGACCCATCAGTG +
Preference number: 4 (lower is better)
Translates to: TLNKVVPAGPSIPRSYCHSESSL*SSDPSV
Trigger: CACTGATGGGTCTGAGGAGCACAGTGAAGATTCTGA...GTGGCAGTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR CCA 90 bp GGCAGGACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACCTTTCCAAATTTCAGTaGAGTCTCTGGCTTGAGCCT +
Preference number: 4 (lower is better)
Translates to: GRTLNKVVPAGPSIPRSYLSKFQ*SLWLEP
Trigger: AGGCTCAAGCCAGAGACTCCACTGAAATTTGGAAAG...GTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGTCCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR TCA 90 bp GACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACTGCCAAATGACAGCAAGGTCTaGAAAGCCTACGATGCAGAA +
Preference number: 4 (lower is better)
Translates to: DTKQGCPSRPVHPQVLLPNDSKV*KAYDAE
Trigger: TTCTGCATCGTAGGCTTTTCAGACCTTGCTGTCATT...TGGCAGTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS GCA 90 bp AGCGCCGCAGGGCCCGGGCCGCCCTGGTCCTCGGCCTCCTCGGGCTaGACGGATGCACGCAGCGCAGCGCCCACCTCTTCAGCGAAAGCA +
Preference number: 5 (lower is better)
Translates to: SAAGPGPPWSSASSG*TDARSAAPTSSAKA
Trigger: TGCTTTCGCTGAAGAGGTGGGCGCTGCGCTGCGTGCATCCGTGCAGCCCGAGGAGGCCGAGGACCAGGGCGGCCCGGGCCCTGCGGCGCT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS CCA 90 bp CACATAGCCAAGGCACAAGGCAGCGCCGCAGGGCCCGGGCCGCCCTaGTCCTCGGCCTCCTCGGGCTGCACGGATGCACGCAGCGCAGCG +
Preference number: 5 (lower is better)
Translates to: HIAKAQGSAAGPGPP*SSASSGCTDARSAA
Trigger: CGCTGCGCTGCGTGCATCCGTGCAGCCCGAGGAGGCCGAGGACCAGGGCGGCCCGGGCCCTGCGGCGCTGCCTTGTGCCTTGGCTATGTG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS GCA 90 bp AGGGCCCGGGCCGCCCTGGTCCTCGGCCTCCTCGGGCTGCACGGATaGACGCAGCGCAGCGCCCACCTCTTCAGCGAAAGCATCCAGAGA +
Preference number: 5 (lower is better)
Translates to: RARAALVLGLLGLHG*TQRSAHLFSESIQR
Trigger: TCTCTGGATGCTTTCGCTGAAGAGGTGGGCGCTGCGCTGCGTGCATCCGTGCAGCCCGAGGAGGCCGAGGACCAGGGCGGCCCGGGCCCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS TCA 90 bp CCCAGACGGGCCAGTTTGCGGCCCGTGCAGCGCTTGGGGTCGCAGTaGCCAAGCTCCCACATAGCCAAGGCACAAGGCAGCGCCGCAGGG +
Preference number: 5 (lower is better)
Translates to: PRRASLRPVQRLGSQ*PSSHIAKAQGSAAG
Trigger: CCCTGCGGCGCTGCCTTGTGCCTTGGCTATGTGGGAGCTTGGTCACTGCGACCCCAAGCGCTGCACGGGCCGCAAACTGGCCCGTCTGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS GCA 90 bp TTTGGCTCAGGCGCAGGCAGCGCACCAGACCCAGACGGGCCAGTTTaGGGCCCGTGCAGCGCTTGGGGTCGCAGTGACCAAGCTCCCACA +
Preference number: 5 (lower is better)
Translates to: FGSGAGSAPDPDGPV*GPCSAWGRSDQAPT
Trigger: TGTGGGAGCTTGGTCACTGCGACCCCAAGCGCTGCACGGGCCGCAAACTGGCCCGTCTGGGTCTGGTGCGCTGCCTGCGCCTGAGCCAAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR CAA 90 bp GGCAGGACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACCCCAGACGGGCCAGTTaGCGGCCCGTGCAGCGCTTG +
Preference number: 5 (lower is better)
Translates to: GRTLNKVVPAGPSIPRSYPRRAS*RPVQRL
Trigger: CAAGCGCTGCACGGGCCGCAAACTGGCCCGTCTGGG...GTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGTCCTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS CCA 90 bp ACGTACTCAGTGCCTACTGGGCTGAGCACCAGACCGCCAAACCTTTaGCTCAGGCGCAGGCAGCGCACCAGACCCAGACGGGCCAGTTTG +
Preference number: 5 (lower is better)
Translates to: TYSVPTGLSTRPPNL*LRRRQRTRPRRASL
Trigger: CAAACTGGCCCGTCTGGGTCTGGTGCGCTGCCTGCGCCTGAGCCAAAGGTTTGGCGGTCTGGTGCTCAGCCCAGTAGGCACTGAGTACGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR CAA 90 bp GACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACTGCCACAGACCGCCAAACCTTaGGCTCAGGCGCAGGCAGCG +
Preference number: 5 (lower is better)
Translates to: DTKQGCPSRPVHPQVLLPQTAKP*AQAQAA
Trigger: CGCTGCCTGCGCCTGAGCCAAAGGTTTGGCGGTCTG...TGGCAGTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS TCA 90 bp CCGGGTGCTGGCCACGGGCCTGTTGAGATTCACAAACTCCCGCCCTaGGTCCACGTCAAAGGGATCGATGTCCTCTTCAGGCGTGTCCCT +
Preference number: 5 (lower is better)
Translates to: PGAGHGPVEIHKLPP*VHVKGIDVLFRRVP
Trigger: AGGGACACGCCTGAAGAGGACATCGATCCCTTTGACGTGGACTCAGGGCGGGAGTTTGTGAATCTCAACAGGCCCGTGGCCAGCACCCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS GCA 90 bp TCTTCAGGCGTGTCCCTGGTGCTAGCCAAGTACCCCTGTTCAGCCTaGAACACCTCCTCCGGGCCACGGCAAGCTGCGTACTTATCCAGG +
Preference number: 5 (lower is better)
Translates to: SSGVSLVLAKYPCSA*NTSSGPRQAAYLSR
Trigger: CCTGGATAAGTACGCAGCTTGCCGTGGCCCGGAGGAGGTGTTGCAGGCTGAACAGGGGTACTTGGCTAGCACCAGGGACACGCCTGAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS TCA 90 bp TCTTCTGAAAGGGTGTGTCGTCCAGTTTGGCCCAGGAGCAGTCTATaGCTGCGACCCCTGACTGTGCCACCAGCTGTCTGTCTGCCGGAG +
Preference number: 5 (lower is better)
Translates to: SSERVCRPVWPRSSL*LRPLTVPPAVCLPE
Trigger: CTCCGGCAGACAGACAGCTGGTGGCACAGTCAGGGGTCGCAGTCATAGACTGCTCCTGGGCCAAACTGGACGACACACCCTTTCAGAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS TCA 90 bp TGTCATCCATGTCCTCAGGTAGCCGGGTGCTGGCCACGGGCCTGTTaGGATTCACAAACTCCCGCCCTGAGTCCACGTCAAAGGGATCGA +
Preference number: 5 (lower is better)
Translates to: CHPCPQVAGCWPRAC*DSQTPALSPRQRDR
Trigger: TCGATCCCTTTGACGTGGACTCAGGGCGGGAGTTTGTGAATCTCAACAGGCCCGTGGCCAGCACCCGGCTACCTGAGGACATGGATGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS CCA 90 bp CTTCCACACAGGAAAGTTTGCAGGGCCGGCCATAGTTTACAGGGTTaGCAGCTACGAGGTAAGGCAGGAGCCGCAAGTGGCTCCCTCGCA +
Preference number: 5 (lower is better)
Translates to: LPHRKVCRAGHSLQG*QLRGKAGAASGSLA
Trigger: TGCGAGGGAGCCACTTGCGGCTCCTGCCTTACCTCGTAGCTGCCAACCCTGTAAACTATGGCCGGCCCTGCAAACTTTCCTGTGTGGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR CAA 90 bp AGGCAGGACACTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTAGGTGTGTCGTCCAGTTaGGCCCAGGAGCAGTCTATG +
Preference number: 5 (lower is better)
Translates to: RQDTKQGCPSRPVHPQVLGVSSS*AQEQSM
Trigger: CATAGACTGCTCCTGGGCCAAACTGGACGACACACC...TAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAGTGTCCTGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR CAA 90 bp CTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACTGCCACTTCAGGTCCAGGAAGCCCTaGCCCCACTTAAACTTCCGA +
Preference number: 5 (lower is better)
Translates to: LNKVVPAGPSIPRSYCHFRSRKP*PHLNFR
Trigger: TCGGAAGTTTAAGTGGGGCAAGGGCTTCCTGGACCT...GAAGTGGCAGTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS-3UTR CAA 90 bp CTAAACAAGGTTGTCCCAGCAGGCCCGTCCATCCCCAGGTCCTACTGCCACTTCAGTGGAGTCTCTGGCTaGAGCCTCTTGTTCTGGGGT +
Preference number: 5 (lower is better)
Translates to: LNKVVPAGPSIPRSYCHFSGVSG*SLLFWG
Trigger: ACCCCAGAACAAGAGGCTCAAGCCAGAGACTCCACT...GAAGTGGCAGTAGGACCTGGGGATGGACGGGCCTGCTGGGACAACCTTGTTTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS GCA 90 bp CTACGATGCAGAAGGCAGCAGCGAAAGCTTCCACACAGGAAAGTTTaGAGGGCCGGCCATAGTTTACAGGGTTGGCAGCTACGAGGTAAG +
Preference number: 5 (lower is better)
Translates to: LRCRRQQRKLPHRKV*RAGHSLQGWQLRGK
Trigger: CTTACCTCGTAGCTGCCAACCCTGTAAACTATGGCCGGCCCTGCAAACTTTCCTGTGTGGAAGCTTTCGCTGCTGCCTTCTGCATCGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS CCA 90 bp TTCAGCTCCAGAGTAGTTGCTGTCTCCTCCATTAGCACCAGGTCCTaGTTCCTCACACTCATCACTGTCCTCCTCAGAATCTTCACTGTG +
Preference number: 5 (lower is better)
Translates to: FSSRVVAVSSISTRS*FLTLITVLLRIFTV
Trigger: CACAGTGAAGATTCTGAGGAGGACAGTGATGAGTGTGAGGAACCAGGACCTGGTGCTAATGGAGGAGACAGCAACTACTCTGGAGCTGAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS CCA 90 bp CCCTTTCCAAATTTCAGTGGAGTCTCTGGCTTGAGCCTCTTGTTCTaGGGTCTCTTCAGCTCCAGAGTAGTTGCTGTCTCCTCCATTAGC +
Preference number: 5 (lower is better)
Translates to: PFPNFSGVSGLSLLF*GLFSSRVVAVSSIS
Trigger: GCTAATGGAGGAGACAGCAACTACTCTGGAGCTGAAGAGACCCCAGAACAAGAGGCTCAAGCCAGAGACTCCACTGAAATTTGGAAAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS GCA 72 bp GGCGCAGGCAGCGCACCAGACCCAGACGGGCCAGTTTaGGGCCCGTGCAGCGCTTGGGGTCGCAGTGACCAA +
Preference number: 6 (lower is better)
Translates to: GAGSAPDPDGPV*GPCSAWGRSDQ
Trigger: TTGGTCACTGCGACCCCAAGCGCTGCACGGGCCGCAAACTGGCCCGTCTGGGTCTGGTGCGCTGCCTGCGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS GCA 72 bp AGCGCACCAGACCCAGACGGGCCAGTTTGCGGCCCGTaGAGCGCTTGGGGTCGCAGTGACCAAGCTCCCACA +
Preference number: 6 (lower is better)
Translates to: SAPDPDGPVCGP*SAWGRSDQAPT
Trigger: TGTGGGAGCTTGGTCACTGCGACCCCAAGCGCTGCACGGGCCGCAAACTGGCCCGTCTGGGTCTGGTGCGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS TCA 72 bp GCCAGTTTGCGGCCCGTGCAGCGCTTGGGGTCGCAGTaGCCAAGCTCCCACATAGCCAAGGCACAAGGCAGC +
Preference number: 6 (lower is better)
Translates to: ASLRPVQRLGSQ*PSSHIAKAQGS
Trigger: GCTGCCTTGTGCCTTGGCTATGTGGGAGCTTGGTCACTGCGACCCCAAGCGCTGCACGGGCCGCAAACTGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS CAA 72 bp AGTGCCTACTGGGCTGAGCACCAGACCGCCAAACCTTaGGCTCAGGCGCAGGCAGCGCACCAGACCCAGACG +
Preference number: 6 (lower is better)
Translates to: SAYWAEHQTAKP*AQAQAAHQTQT
Trigger: CGTCTGGGTCTGGTGCGCTGCCTGCGCCTGAGCCAAAGGTTTGGCGGTCTGGTGCTCAGCCCAGTAGGCACT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS GCA 72 bp GTGTCCCTGGTGCTAGCCAAGTACCCCTGTTCAGCCTaGAACACCTCCTCCGGGCCACGGCAAGCTGCGTAC +
Preference number: 6 (lower is better)
Translates to: VSLVLAKYPCSA*NTSSGPRQAAY
Trigger: GTACGCAGCTTGCCGTGGCCCGGAGGAGGTGTTGCAGGCTGAACAGGGGTACTTGGCTAGCACCAGGGACAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS CAA 90 bp CACGTACTCAGTGCCTACTGGGCTGAGCACCAGACCGCCAAACCTTaGGCTCAGGCGCAGGCAGCGCACCAGACCCAGACGGGCCAGTTT +
Preference number: 6 (lower is better)
Translates to: HVLSAYWAEHQTAKP*AQAQAAHQTQTGQF
Trigger: AAACTGGCCCGTCTGGGTCTGGTGCGCTGCCTGCGCCTGAGCCAAAGGTTTGGCGGTCTGGTGCTCAGCCCAGTAGGCACTGAGTACGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS GCA 72 bp TTCAGCCTGCAACACCTCCTCCGGGCCACGGCAAGCTaGGTACTTATCCAGGAGCTCCCGGTTCAGGTCCAG +
Preference number: 6 (lower is better)
Translates to: FSLQHLLRATAS*VLIQELPVQVQ
Trigger: CTGGACCTGAACCGGGAGCTCCTGGATAAGTACGCAGCTTGCCGTGGCCCGGAGGAGGTGTTGCAGGCTGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS TCA 72 bp TGTCTGCCGGAGACACGTACTCAGTGCCTACTGGGCTaGGCACCAGACCGCCAAACCTTTGGCTCAGGCGCA +
Preference number: 6 (lower is better)
Translates to: CLPETRTQCLLG*APDRQTFGSGA
Trigger: TGCGCCTGAGCCAAAGGTTTGGCGGTCTGGTGCTCAGCCCAGTAGGCACTGAGTACGTGTCTCCGGCAGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS TCA 72 bp CAGTTTGGCCCAGGAGCAGTCTATGACTGCGACCCCTaGCTGTGCCACCAGCTGTCTGTCTGCCGGAGACAC +
Preference number: 6 (lower is better)
Translates to: QFGPGAVYDCDP*LCHQLSVCRRH
Trigger: GTGTCTCCGGCAGACAGACAGCTGGTGGCACAGTCAGGGGTCGCAGTCATAGACTGCTCCTGGGCCAAACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS TCA 72 bp TGTCCTCAGGTAGCCGGGTGCTGGCCACGGGCCTGTTaGGATTCACAAACTCCCGCCCTGAGTCCACGTCAA +
Preference number: 6 (lower is better)
Translates to: CPQVAGCWPRAC*DSQTPALSPRQ
Trigger: TTGACGTGGACTCAGGGCGGGAGTTTGTGAATCTCAACAGGCCCGTGGCCAGCACCCGGCTACCTGAGGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS TCA 72 bp AGGGTGTGTCGTCCAGTTTGGCCCAGGAGCAGTCTATaGCTGCGACCCCTGACTGTGCCACCAGCTGTCTGT +
Preference number: 6 (lower is better)
Translates to: RVCRPVWPRSSL*LRPLTVPPAVC
Trigger: ACAGACAGCTGGTGGCACAGTCAGGGGTCGCAGTCATAGACTGCTCCTGGGCCAAACTGGACGACACACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS CCA 72 bp AGGAAAGTTTGCAGGGCCGGCCATAGTTTACAGGGTTaGCAGCTACGAGGTAAGGCAGGAGCCGCAAGTGGC +
Preference number: 6 (lower is better)
Translates to: RKVCRAGHSLQG*QLRGKAGAASG
Trigger: GCCACTTGCGGCTCCTGCCTTACCTCGTAGCTGCCAACCCTGTAAACTATGGCCGGCCCTGCAAACTTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS GCA 72 bp AGAAGGCAGCAGCGAAAGCTTCCACACAGGAAAGTTTaGAGGGCCGGCCATAGTTTACAGGGTTGGCAGCTA +
Preference number: 6 (lower is better)
Translates to: RRQQRKLPHRKV*RAGHSLQGWQL
Trigger: TAGCTGCCAACCCTGTAAACTATGGCCGGCCCTGCAAACTTTCCTGTGTGGAAGCTTTCGCTGCTGCCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS CAA 72 bp TTATCCAGGAGCTCCCGGTTCAGGTCCAGGAAGCCCTaGCCCCACTTAAACTTCCGAAGCAAAATGACAGCA +
Preference number: 6 (lower is better)
Translates to: LSRSSRFRSRKP*PHLNFRSKMTA
Trigger: TGCTGTCATTTTGCTTCGGAAGTTTAAGTGGGGCAAGGGCTTCCTGGACCTGAACCGGGAGCTCCTGGATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS CAA 90 bp CTTGATCCCTTTCCAAATTTCAGTGGAGTCTCTGGCTTGAGCCTCTaGTTCTGGGGTCTCTTCAGCTCCAGAGTAGTTGCTGTCTCCTCC +
Preference number: 6 (lower is better)
Translates to: LDPFPNFSGVSGLSL*FWGLFSSRVVAVSS
Trigger: GGAGGAGACAGCAACTACTCTGGAGCTGAAGAGACCCCAGAACAAGAGGCTCAAGCCAGAGACTCCACTGAAATTTGGAAAGGGATCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS CCA 72 bp AGAGTAGTTGCTGTCTCCTCCATTAGCACCAGGTCCTaGTTCCTCACACTCATCACTGTCCTCCTCAGAATC +
Preference number: 6 (lower is better)
Translates to: RVVAVSSISTRS*FLTLITVLLRI
Trigger: GATTCTGAGGAGGACAGTGATGAGTGTGAGGAACCAGGACCTGGTGCTAATGGAGGAGACAGCAACTACTCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS CCA 72 bp AATTTCAGTGGAGTCTCTGGCTTGAGCCTCTTGTTCTaGGGTCTCTTCAGCTCCAGAGTAGTTGCTGTCTCC +
Preference number: 6 (lower is better)
Translates to: NFSGVSGLSLLF*GLFSSRVVAVS
Trigger: GGAGACAGCAACTACTCTGGAGCTGAAGAGACCCCAGAACAAGAGGCTCAAGCCAGAGACTCCACTGAAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS TCA 72 bp TTGATCCCTTTCCAAATTTCAGTGGAGTCTCTGGCTTaGGCCTCTTGTTCTGGGGTCTCTTCAGCTCCAGAG +
Preference number: 6 (lower is better)
Translates to: LIPFQISVESLA*ASCSGVSSAPE
Trigger: CTCTGGAGCTGAAGAGACCCCAGAACAAGAGGCTCAAGCCAGAGACTCCACTGAAATTTGGAAAGGGATCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS CAA 72 bp CTTGATCCCTTTCCAAATTTCAGTGGAGTCTCTGGCTaGAGCCTCTTGTTCTGGGGTCTCTTCAGCTCCAGA +
Preference number: 6 (lower is better)
Translates to: LDPFPNFSGVSG*SLLFWGLFSSR
Trigger: TCTGGAGCTGAAGAGACCCCAGAACAAGAGGCTCAAGCCAGAGACTCCACTGAAATTTGGAAAGGGATCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS CAA 90 bp CTGTCGTTTCTTGATCCCTTTCCAAATTTCAGTGGAGTCTCTGGCTaGAGCCTCTTGTTCTGGGGTCTCTTCAGCTCCAGAGTAGTTGCT +
Preference number: 6 (lower is better)
Translates to: LSFLDPFPNFSGVSG*SLLFWGLFSSRVVA
Trigger: AGCAACTACTCTGGAGCTGAAGAGACCCCAGAACAAGAGGCTCAAGCCAGAGACTCCACTGAAATTTGGAAAGGGATCAAGAAACGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7
CDS CAA 72 bp TTTCCAAATTTCAGTGGAGTCTCTGGCTTGAGCCTCTaGTTCTGGGGTCTCTTCAGCTCCAGAGTAGTTGCT +
Preference number: 6 (lower is better)
Translates to: FPNFSGVSGLSL*FWGLFSSRVVA
Trigger: AGCAACTACTCTGGAGCTGAAGAGACCCCAGAACAAGAGGCTCAAGCCAGAGACTCCACTGAAATTTGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063574.7