RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TSPYL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047514

Ensembl transcript IDs: ENSMUST00000061372.7

Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATATGTGGAGACAGAAATTGTGAACCTGAAGAAGTGAAGGTATGGTaGTACTGCACAAGTTGTGTGGGAAGATCTGCAATCTCAGTAAGC +
Preference number: 1 (lower is better)
Translates to: ICGDRNCEPEEVKVW*YCTSCVGRSAISVS
Trigger: GCTTACTGAGATTGCAGATCTTCCCACACAACTTGTGCAGTATCACCATACCTTCACTTCTTCAGGTTCACAATTTCTGTCTCCACATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
3UTR-3UTR TCA 90 bp AAAAATCACACAGACAGTGGCCCACTCCTTCAATGTTTAGGCTCAGCAACTGTCTTGCTCAAGCACAGGTaGGAAGGGACCAGTTCCGGC +
Preference number: 2 (lower is better)
Translates to: KNHTDSGPLLQCLGSATVLLKHR*EGTSSG
Trigger: GCCGGAACTGGTCCCTTCTCACCTGTGCTTGAGCAA...GACAGTTGCTGAGCCTAAACATTGAAGGAGTGGGCCACTGTCTGTGTGATTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
3UTR-3UTR CCA 90 bp AAGACCAGCCTGGTCTACAGAGTGAGTTGTCTTACAATATTCCAAATGGTTTCAAACCAGGCTGGGGAGTaGGTAAGAGAGGAGACAAGG +
Preference number: 2 (lower is better)
Translates to: KTSLVYRVSCLTIFQMVSNQAGE*VREETR
Trigger: CCTTGTCTCCTCTCTTACCCACTCCCCAGCCTGGTT...TGAAACCATTTGGAATATTGTAAGACAACTCACTCTGTAGACCAGGCTGGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
3UTR-3UTR GCA 90 bp TTTTACAGAGTATCTTCTCAGGAAATGCTAAGTATAAATGACTCCTGGCCTTACACACTGCATACCCGTTaGATTTGCTCAAGCACAGGT +
Preference number: 2 (lower is better)
Translates to: FYRVSSQEMLSINDSWPYTLHTR*ICSSTG
Trigger: ACCTGTGCTTGAGCAAATGCAACGGGTATGCAGTGT...GTAAGGCCAGGAGTCATTTATACTTAGCATTTCCTGAGAAGATACTCTGTAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
3UTR CAA 90 bp TTCAAGCAGGAGAAACAACTACTCTTGGTACCTCTGGGATGTCAATaGTGTACGTTTAAGGAATTGAATAATTCAACAATCTTGTCAATT +
Preference number: 2 (lower is better)
Translates to: FKQEKQLLLVPLGCQ*CTFKELNNSTILSI
Trigger: AATTGACAAGATTGTTGAATTATTCAATTCCTTAAACGTACACAATTGACATCCCAGAGGTACCAAGAGTAGTTGTTTCTCCTGCTTGAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
3UTR TCA 72 bp AACACTGCATACCCGTTGCATTTGCTCAAGCACAGGTaGGAAGGGACCAGTTCCGGCCGCATTTTCAAATGC +
Preference number: 3 (lower is better)
Translates to: NTAYPLHLLKHR*EGTSSGRIFKC
Trigger: GCATTTGAAAATGCGGCCGGAACTGGTCCCTTCTCACCTGTGCTTGAGCAAATGCAACGGGTATGCAGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
3UTR GCA 72 bp AGGAAAGAAATCAAAACACTGCATACCCGTTGCATTTaGTCAAGCACAGGTGAGAAGGGACCAGTTCCGGCC +
Preference number: 3 (lower is better)
Translates to: RKEIKTLHTRCI*SSTGEKGPVPA
Trigger: GGCCGGAACTGGTCCCTTCTCACCTGTGCTTGAGCAAATGCAACGGGTATGCAGTGTTTTGATTTCTTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
3UTR-3UTR CAA 90 bp AAAAATCACACAGACAGTGGCCCACTCCTTCAATGTTTAGGCTCAGCAACTGTCAACTCTGTGTCCACGTaGCCACATGATGAACAGATA +
Preference number: 3 (lower is better)
Translates to: KNHTDSGPLLQCLGSATVNSVST*PHDEQI
Trigger: TATCTGTTCATCATGTGGCAACGTGGACACAGAGTT...GACAGTTGCTGAGCCTAAACATTGAAGGAGTGGGCCACTGTCTGTGTGATTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
3UTR TCA 72 bp GACAGAAATTGTGAACCTGAAGAAGTGAAGGTATGGTaGTACTGCACAAGTTGTGTGGGAAGATCTGCAATC +
Preference number: 3 (lower is better)
Translates to: DRNCEPEEVKVW*YCTSCVGRSAI
Trigger: GATTGCAGATCTTCCCACACAACTTGTGCAGTATCACCATACCTTCACTTCTTCAGGTTCACAATTTCTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
3UTR TCA 72 bp TCATATGTGGAGACAGAAATTGTGAACCTGAAGAAGTaGAGGTATGGTGATACTGCACAAGTTGTGTGGGAA +
Preference number: 3 (lower is better)
Translates to: SYVETEIVNLKK*RYGDTAQVVWE
Trigger: TTCCCACACAACTTGTGCAGTATCACCATACCTTCACTTCTTCAGGTTCACAATTTCTGTCTCCACATATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
3UTR CCA 72 bp AACAACTACTCTTCAAGCAGGAGAAACAACTACTCTTaGTACCTCTGGGATGTCAATTGTGTACGTTTAAGG +
Preference number: 3 (lower is better)
Translates to: NNYSSSRRNNYS*YLWDVNCVRLR
Trigger: CCTTAAACGTACACAATTGACATCCCAGAGGTACCAAGAGTAGTTGTTTCTCCTGCTTGAAGAGTAGTTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
3UTR TCA 72 bp TTACAGAGTATCTTCTCAGGAAATGCTAAGTATAAATaGCTCCTGGCCTTACAGATGTTTCTGAACTACTTT +
Preference number: 3 (lower is better)
Translates to: LQSIFSGNAKYK*LLALQMFLNYF
Trigger: AAAGTAGTTCAGAAACATCTGTAAGGCCAGGAGTCATTTATACTTAGCATTTCCTGAGAAGATACTCTGTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR GCA 90 bp ACCCGTTGCATTTGCTCAAGCACAGGTGAGAAGGGACCAGTTCCGGCCGCATTTGCTCCCCACGATCCCTaGGCGGCCCTCACCTGTCAC +
Preference number: 4 (lower is better)
Translates to: TRCICSSTGEKGPVPAAFAPHDP*AALTCH
Trigger: GTGACAGGTGAGGGCCGCGCAGGGATCGTGGGGAGC...AAATGCGGCCGGAACTGGTCCCTTCTCACCTGTGCTTGAGCAAATGCAACGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR CCA 90 bp CACTGCATACCCGTTGCATTTGCTCAAGCACAGGTGAGAAGGGACCAGTTCCGGCAGCGGTCGCCGGTCTaGGGTCCCCGAGACAGTGTC +
Preference number: 4 (lower is better)
Translates to: HCIPVAFAQAQVRRDQFRQRSPV*GPRDSV
Trigger: GACACTGTCTCGGGGACCCCAGACCGGCGACCGCTG...CCGGAACTGGTCCCTTCTCACCTGTGCTTGAGCAAATGCAACGGGTATGCAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR GCA 90 bp ACCCGTTGCATTTGCTCAAGCACAGGTGAGAAGGGACCAGTTCCGGCCGCATTTTCGCCCGCGGGCTTCTaGTCCACCTCCATCACCTCC +
Preference number: 4 (lower is better)
Translates to: TRCICSSTGEKGPVPAAFSPAGF*STSITS
Trigger: GGAGGTGATGGAGGTGGAGCAGAAGCCCGCGGGCGA...AAATGCGGCCGGAACTGGTCCCTTCTCACCTGTGCTTGAGCAAATGCAACGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR TCA 90 bp ACCCGTTGCATTTGCTCAAGCACAGGTGAGAAGGGACCAGTTCCGGCCGCATTTATCATGGCGGACAACTaGGGGTGGTTCCGGAAGGCA +
Preference number: 4 (lower is better)
Translates to: TRCICSSTGEKGPVPAAFIMADN*GWFRKA
Trigger: TGCCTTCCGGAACCACCCTCAGTTGTCCGCCATGAT...AAATGCGGCCGGAACTGGTCCCTTCTCACCTGTGCTTGAGCAAATGCAACGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR CCA 90 bp CACTGCATACCCGTTGCATTTGCTCAAGCACAGGTGAGAAGGGACCAGTTCCGGGGAAGCCAAAAGGCCTaGGAATCTCCACTGGCTCCC +
Preference number: 4 (lower is better)
Translates to: HCIPVAFAQAQVRRDQFRGSQKA*ESPLAP
Trigger: GGGAGCCAGTGGAGATTCCCAGGCCTTTTGGCTTCC...CCGGAACTGGTCCCTTCTCACCTGTGCTTGAGCAAATGCAACGGGTATGCAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR CCA 90 bp CTTAATCTCGAGGTGGAGACTATCCAGATAGAAGATGCAGAAAAGTCAGGAGGAGCGGCCACCCGAATCTaGGGGACAAGGCCCTCGACA +
Preference number: 4 (lower is better)
Translates to: LNLEVETIQIEDAEKSGGAATRI*GTRPST
Trigger: TGTCGAGGGCCTTGTCCCCCAGATTCGGGTGGCCGC...TCCTCCTGACTTTTCTGCATCTTCTATCTGGATAGTCTCCACCTCGAGATTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR CCA 90 bp CACTGCATACCCGTTGCATTTGCTCAAGCACAGGTGAGAAGGGACCAGTTCCGGGCTCCCCGAGTTTCTTaGGCCTTCTCCACATATTTC +
Preference number: 4 (lower is better)
Translates to: HCIPVAFAQAQVRRDQFRAPRVS*AFSTYF
Trigger: GAAATATGTGGAGAAGGCCCAAGAAACTCGGGGAGC...CCGGAACTGGTCCCTTCTCACCTGTGCTTGAGCAAATGCAACGGGTATGCAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR TCA 90 bp CTTAATCTCGAGGTGGAGACTATCCAGATAGAAGATGCAGAAAAGTCAGGAGGACCGAACGGAAGGAGGTaGCTCTCCCTGCCTAGCTGC +
Preference number: 4 (lower is better)
Translates to: LNLEVETIQIEDAEKSGGPNGRR*LSLPSC
Trigger: GCAGCTAGGCAGGGAGAGTCACCTCCTTCCGTTCGG...TCCTCCTGACTTTTCTGCATCTTCTATCTGGATAGTCTCCACCTCGAGATTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR TCA 90 bp CACTGCATACCCGTTGCATTTGCTCAAGCACAGGTGAGAAGGGACCAGTTCCGGCACCACTCGACCAGATaGTCTCACTTCATATTCCTT +
Preference number: 4 (lower is better)
Translates to: HCIPVAFAQAQVRRDQFRHHSTR*SHFIFL
Trigger: AAGGAATATGAAGTGAGATCATCTGGTCGAGTGGTG...CCGGAACTGGTCCCTTCTCACCTGTGCTTGAGCAAATGCAACGGGTATGCAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR GCA 90 bp AATGACAGTAACAACTACTCTTCAAGCAGGAGAAACAACTACTCTTGGTACCTCAGATCTATGCCCAGGTaGCAGGGCCCTGCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: NDSNNYSSSRRNNYSWYLRSMPR*QGPASS
Trigger: GGAGGAGGCAGGGCCCTGGCACCTGGGCATAGATCT...GAGGTACCAAGAGTAGTTGTTTCTCCTGCTTGAAGAGTAGTTGTTACTGTCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR TCA 90 bp AATGACAGTAACAACTACTCTTCAAGCAGGAGAAACAACTACTCTTGGTACCTCAAGGCCCTGTCGGCCTaGGCATTCACAGTGTCCAGT +
Preference number: 4 (lower is better)
Translates to: NDSNNYSSSRRNNYSWYLKALSA*AFTVSS
Trigger: ACTGGACACTGTGAATGCTCAGGCCGACAGGGCCTT...GAGGTACCAAGAGTAGTTGTTTCTCCTGCTTGAAGAGTAGTTGTTACTGTCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR GCA 90 bp CTTAATCTCGAGGTGGAGACTATCCAGATAGAAGATGCAGAAAAGTCAGGAGGAATTCGCCCAAACTTCTaGTCCAGATGTTGGAAGGCC +
Preference number: 4 (lower is better)
Translates to: LNLEVETIQIEDAEKSGGIRPNF*SRCWKA
Trigger: GGCCTTCCAACATCTGGAGCAGAAGTTTGGGCGAAT...TCCTCCTGACTTTTCTGCATCTTCTATCTGGATAGTCTCCACCTCGAGATTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR CCA 90 bp TTTTACAGAGTATCTTCTCAGGAAATGCTAAGTATAAATGACTCCTGGCCTTACCTGCGAATGAAGGACTaGGGCTCATGCCCTCTCCGC +
Preference number: 4 (lower is better)
Translates to: FYRVSSQEMLSINDSWPYLRMKD*GSCPLR
Trigger: GCGGAGAGGGCATGAGCCCCAGTCCTTCATTCGCAG...GTAAGGCCAGGAGTCATTTATACTTAGCATTTCCTGAGAAGATACTCTGTAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR CCA 90 bp CTGGTCTACAGAGTGAGTTGTCTTACAATATTCCAAATGGTTTCAAATAAATGCCCTCGCTCCCTGGCGTaGCCACTTCTGACTTTTCCG +
Preference number: 4 (lower is better)
Translates to: LVYRVSCLTIFQMVSNKCPRSLA*PLLTFP
Trigger: CGGAAAAGTCAGAAGTGGCCACGCCAGGGAGCGAGG...GCATTTATTTGAAACCATTTGGAATATTGTAAGACAACTCACTCTGTAGACCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR TCA 90 bp CTGGTCTACAGAGTGAGTTGTCTTACAATATTCCAAATGGTTTCAAATAAATGCCTTGGTTTCTGCGAATaGAGGACTGGGGCTCATGCC +
Preference number: 4 (lower is better)
Translates to: LVYRVSCLTIFQMVSNKCLGFCE*RTGAHA
Trigger: GGCATGAGCCCCAGTCCTTCATTCGCAGAAACCAAG...GCATTTATTTGAAACCATTTGGAATATTGTAAGACAACTCACTCTGTAGACCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR TCA 90 bp AAGACCAGCCTGGTCTACAGAGTGAGTTGTCTTACAATATTCCAAATGGTTTCACTGGGATATTCTGAATaGTGTAGTTCCTCCGTTCCA +
Preference number: 4 (lower is better)
Translates to: KTSLVYRVSCLTIFQMVSLGYSE*CSSSVP
Trigger: TGGAACGGAGGAACTACATCATTCAGAATATCCCAG...TGAAACCATTTGGAATATTGTAAGACAACTCACTCTGTAGACCAGGCTGGTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR CCA 90 bp AAGACCAGCCTGGTCTACAGAGTGAGTTGTCTTACAATATTCCAAATGGTTTCAGTATTGCAGTGGGTTTaGCCACAGATCCTCTTTGAT +
Preference number: 4 (lower is better)
Translates to: KTSLVYRVSCLTIFQMVSVLQWV*PQILFD
Trigger: ATCAAAGAGGATCTGTGGCCAAACCCACTGCAATAC...TGAAACCATTTGGAATATTGTAAGACAACTCACTCTGTAGACCAGGCTGGTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR CCA 90 bp AAGACCAGCCTGGTCTACAGAGTGAGTTGTCTTACAATATTCCAAATGGTTTCACTGCAAATGAGATCTTaGTTTCTGCGAATGAAGGAC +
Preference number: 4 (lower is better)
Translates to: KTSLVYRVSCLTIFQMVSLQMRS*FLRMKD
Trigger: GTCCTTCATTCGCAGAAACCAAGATCTCATTTGCAG...TGAAACCATTTGGAATATTGTAAGACAACTCACTCTGTAGACCAGGCTGGTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR CCA 90 bp CTGGTCTACAGAGTGAGTTGTCTTACAATATTCCAAATGGTTTCAAATAAATGCCCTTCACCTCCAGACTaGTTACGTACCTTAACATCT +
Preference number: 4 (lower is better)
Translates to: LVYRVSCLTIFQMVSNKCPSPPD*LRTLTS
Trigger: AGATGTTAAGGTACGTAACCAGTCTGGAGGTGAAGG...GCATTTATTTGAAACCATTTGGAATATTGTAAGACAACTCACTCTGTAGACCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
3UTR CAA 72 bp GAGAAACAACTACTCTTGGTACCTCTGGGATGTCAATaGTGTACGTTTAAGGAATTGAATAATTCAACAATC +
Preference number: 4 (lower is better)
Translates to: EKQLLLVPLGCQ*CTFKELNNSTI
Trigger: GATTGTTGAATTATTCAATTCCTTAAACGTACACAATTGACATCCCAGAGGTACCAAGAGTAGTTGTTTCTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS CCA 90 bp CTCACCTGTCACCGCCTTCTCCTCGCCGAGCAGCGGTCGCCGGTCTaGGGTCCCCGAGACAGTGTCAGCATCGCAGTGGCCGCGGCTGTC +
Preference number: 5 (lower is better)
Translates to: LTCHRLLLAEQRSPV*GPRDSVSIAVAAAV
Trigger: GACAGCCGCGGCCACTGCGATGCTGACACTGTCTCGGGGACCCCAGACCGGCGACCGCTGCTCGGCGAGGAGAAGGCGGTGACAGGTGAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS CCA 90 bp CCGCGGGCTTCTGCTCCACCTCCATCACCTCCTCGCTCCCTGGCGTaGCCACTTCTGACTTTTCCGCTGCAGCCGCGACGGTGCCCGGTT +
Preference number: 5 (lower is better)
Translates to: PRASAPPPSPPRSLA*PLLTFPLQPRRCPV
Trigger: AACCGGGCACCGTCGCGGCTGCAGCGGAAAAGTCAGAAGTGGCCACGCCAGGGAGCGAGGAGGTGATGGAGGTGGAGCAGAAGCCCGCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS TCA 90 bp CTGCTCCACCTCCATCACCTCCTCGCTCCCTGGCGTGGCCACTTCTaGCTTTTCCGCTGCAGCCGCGACGGTGCCCGGTTCCGTCTTCAC +
Preference number: 5 (lower is better)
Translates to: LLHLHHLLAPWRGHF*LFRCSRDGARFRLH
Trigger: GTGAAGACGGAACCGGGCACCGTCGCGGCTGCAGCGGAAAAGTCAGAAGTGGCCACGCCAGGGAGCGAGGAGGTGATGGAGGTGGAGCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR CAA 90 bp CACTGCATACCCGTTGCATTTGCTCAAGCACAGGTGAGAAGGGACCAGTTCCGGGCTGCAAATGAGATCTaGGTTTCTGCGAATGAAGGA +
Preference number: 5 (lower is better)
Translates to: HCIPVAFAQAQVRRDQFRAANEI*VSANEG
Trigger: TCCTTCATTCGCAGAAACCAAGATCTCATTTGCAGC...CCGGAACTGGTCCCTTCTCACCTGTGCTTGAGCAAATGCAACGGGTATGCAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR CAA 90 bp TTTTACAGAGTATCTTCTCAGGAAATGCTAAGTATAAATGACTCCTGGCCTTACACGACACAGGTAGTATaGCAGTGGGTTTGGCCACAG +
Preference number: 5 (lower is better)
Translates to: FYRVSSQEMLSINDSWPYTTQVV*QWVWPQ
Trigger: CTGTGGCCAAACCCACTGCAATACTACCTGTGTCGT...GTAAGGCCAGGAGTCATTTATACTTAGCATTTCCTGAGAAGATACTCTGTAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR CAA 90 bp CTTAATCTCGAGGTGGAGACTATCCAGATAGAAGATGCAGAAAAGTCAGGAGGAAAAAAGAACTTGAATTaGCAGCCAGTCTTAGGGTGT +
Preference number: 5 (lower is better)
Translates to: LNLEVETIQIEDAEKSGGKKNLN*QPVLGC
Trigger: ACACCCTAAGACTGGCTGCAAATTCAAGTTCTTTTT...TCCTCCTGACTTTTCTGCATCTTCTATCTGGATAGTCTCCACCTCGAGATTAAG
42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS-3UTR CAA 90 bp TTTTACAGAGTATCTTCTCAGGAAATGCTAAGTATAAATGACTCCTGGCCTTACGGCCACAGATCCTCTTaGATAATCTCAGCGATTCTG +
Preference number: 5 (lower is better)
Translates to: FYRVSSQEMLSINDSWPYGHRSS*IISAIL
Trigger: CAGAATCGCTGAGATTATCAAAGAGGATCTGTGGCC...GTAAGGCCAGGAGTCATTTATACTTAGCATTTCCTGAGAAGATACTCTGTAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS CCA 72 bp CACCGCCTTCTCCTCGCCGAGCAGCGGTCGCCGGTCTaGGGTCCCCGAGACAGTGTCAGCATCGCAGTGGCC +
Preference number: 6 (lower is better)
Translates to: HRLLLAEQRSPV*GPRDSVSIAVA
Trigger: GGCCACTGCGATGCTGACACTGTCTCGGGGACCCCAGACCGGCGACCGCTGCTCGGCGAGGAGAAGGCGGTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS CCA 72 bp GGTGACTCTCCCTGCCTAGCTGCGGCCACCCGAATCTaGGGGACAAGGCCCTCGACATCTCGGGGCGCGGGG +
Preference number: 6 (lower is better)
Translates to: GDSPCLAAATRI*GTRPSTSRGAG
Trigger: CCCCGCGCCCCGAGATGTCGAGGGCCTTGTCCCCCAGATTCGGGTGGCCGCAGCTAGGCAGGGAGAGTCACC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS TCA 72 bp GAACACCGCTGCCGCGGGGCCCCGAACGGAAGGAGGTaGCTCTCCCTGCCTAGCTGCGGCCACCCGAATCTG +
Preference number: 6 (lower is better)
Translates to: EHRCRGAPNGRR*LSLPSCGHPNL
Trigger: CAGATTCGGGTGGCCGCAGCTAGGCAGGGAGAGTCACCTCCTTCCGTTCGGGGCCCCGCGGCAGCGGTGTTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS GCA 72 bp GCCTCCAGCGGGTTCCTGCGAAGATCTATGCCCAGGTaGCAGGGCCCTGCCTCCTCCGGCGCCTCCCTCACT +
Preference number: 6 (lower is better)
Translates to: ASSGFLRRSMPR*QGPASSGASLT
Trigger: AGTGAGGGAGGCGCCGGAGGAGGCAGGGCCCTGGCACCTGGGCATAGATCTTCGCAGGAACCCGCTGGAGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS GCA 72 bp GCCTCCAGCATCTCCATTTCTTCGCCCGCGGGCTTCTaGTCCACCTCCATCACCTCCTCGCTCCCTGGCGTG +
Preference number: 6 (lower is better)
Translates to: ASSISISSPAGF*STSITSSLPGV
Trigger: CACGCCAGGGAGCGAGGAGGTGATGGAGGTGGAGCAGAAGCCCGCGGGCGAAGAAATGGAGATGCTGGAGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7
CDS CCA 72 bp TCTGCTCCACCTCCATCACCTCCTCGCTCCCTGGCGTaGCCACTTCTGACTTTTCCGCTGCAGCCGCGACGG +
Preference number: 6 (lower is better)
Translates to: SAPPPSPPRSLA*PLLTFPLQPRR
Trigger: CCGTCGCGGCTGCAGCGGAAAAGTCAGAAGTGGCCACGCCAGGGAGCGAGGAGGTGATGGAGGTGGAGCAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061372.7