RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TSPO2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023995

Ensembl transcript IDs: ENSMUST00000024794.12, ENSMUST00000159988.2, ENSMUST00000162481.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCGTGCCTCAGTTTGTTCTCCTCGGATGGCTAAGGCTGGTACGTTaGACACAAGCTGTCCCTCCACAGGCGGTAGGTGATGGCGGTGGT +
Preference number: 1 (lower is better)
Translates to: PVPQFVLLGWLRLVR*TQAVPPQAVGDGGG
Trigger: ACCACCGCCATCACCTACCGCCTGTGGAGGGACAGCTTGTGTCCAACGTACCAGCCTTAGCCATCCGAGGAGAACAAACTGAGGCACGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162481.2
3UTR CCA 90 bp CCTCCCTTCTTCTGCATCCCCGTGCCTCAGTTTGTTCTCCTCGGATaGCTAAGGCTGGTACGTTGGACACAAGCTGTCCCTCCACAGGCG +
Preference number: 1 (lower is better)
Translates to: PPFFCIPVPQFVLLG*LRLVRWTQAVPPQA
Trigger: CGCCTGTGGAGGGACAGCTTGTGTCCAACGTACCAGCCTTAGCCATCCGAGGAGAACAAACTGAGGCACGGGGATGCAGAAGAAGGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162481.2
3UTR-3UTR CCA 90 bp CCCTTCTTCTGCATCCCCGTGCCTCAGTTTGTTCTCCTCGGATGGCTAAGGCTGAGCCAGCTTGTTGATTaGCTGCCAGATAAACACCAG +
Preference number: 2 (lower is better)
Translates to: PFFCIPVPQFVLLGWLRLSQLVD*LPDKHQ
Trigger: CTGGTGTTTATCTGGCAGCCAATCAACAAGCTGGCT...CAGCCTTAGCCATCCGAGGAGAACAAACTGAGGCACGGGGATGCAGAAGAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162481.2
3UTR GCA 72 bp CCAGCTACTCCAGCTTCTTGCCGTCCTCCCTTCTTCTaGATCCCCGTGCCTCAGTTTGTTCTCCTCGGATGG +
Preference number: 3 (lower is better)
Translates to: PATPASCRPPFF*IPVPQFVLLGW
Trigger: CCATCCGAGGAGAACAAACTGAGGCACGGGGATGCAGAAGAAGGGAGGACGGCAAGAAGCTGGAGTAGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024794.12
ENSMUST00000162481.2
3UTR GCA 72 bp TCAAGTATCCCTAGCTCCCCAGCTACTCCAGCTTCTTaGCGTCCTCCCTTCTTCTGCATCCCCGTGCCTCAG +
Preference number: 3 (lower is better)
Translates to: SSIPSSPATPAS*RPPFFCIPVPQ
Trigger: CTGAGGCACGGGGATGCAGAAGAAGGGAGGACGGCAAGAAGCTGGAGTAGCTGGGGAGCTAGGGATACTTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024794.12
ENSMUST00000162481.2
3UTR CCA 72 bp CAGTTTGTTCTCCTCGGATGGCTAAGGCTGGTACGTTaGACACAAGCTGTCCCTCCACAGGCGGTAGGTGAT +
Preference number: 3 (lower is better)
Translates to: QFVLLGWLRLVR*TQAVPPQAVGD
Trigger: ATCACCTACCGCCTGTGGAGGGACAGCTTGTGTCCAACGTACCAGCCTTAGCCATCCGAGGAGAACAAACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162481.2
3UTR CCA 72 bp TTCTGCATCCCCGTGCCTCAGTTTGTTCTCCTCGGATaGCTAAGGCTGGTACGTTGGACACAAGCTGTCCCT +
Preference number: 3 (lower is better)
Translates to: FCIPVPQFVLLG*LRLVRWTQAVP
Trigger: AGGGACAGCTTGTGTCCAACGTACCAGCCTTAGCCATCCGAGGAGAACAAACTGAGGCACGGGGATGCAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162481.2
CDS-3UTR TCA 90 bp TGGCTAAGGCTGGTACGTTGGACACAAGCTGTCCCTCCACAGGCGGTAGGTGATTCCAGGAGGGCCCCATaGCAGAGTAGATGGTCACCC +
Preference number: 4 (lower is better)
Translates to: WLRLVRWTQAVPPQAVGDSRRAP*QSRWSP
Trigger: GGGTGACCATCTACTCTGTCATGGGGCCCTCCTGGA...ATCACCTACCGCCTGTGGAGGGACAGCTTGTGTCCAACGTACCAGCCTTAGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162481.2
CDS-3UTR TCA 90 bp TCTTGCCGTCCTCCCTTCTTCTGCATCCCCGTGCCTCAGTTTGTTCTCCTCGGAAGCAATATGACCTTGTaGGGTGGGCACCAGGGTAAC +
Preference number: 4 (lower is better)
Translates to: SCRPPFFCIPVPQFVLLGSNMTL*GGHQGN
Trigger: GTTACCCTGGTGCCCACCTCACAAGGTCATATTGCT...TCCGAGGAGAACAAACTGAGGCACGGGGATGCAGAAGAAGGGAGGACGGCAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024794.12
ENSMUST00000162481.2
CDS-3UTR CCA 90 bp TGCCGTCCTCCCTTCTTCTGCATCCCCGTGCCTCAGTTTGTTCTCCTCGGATGGAGCCAGCTTGTTGATTaGCTGCCAGATAAACACCAG +
Preference number: 4 (lower is better)
Translates to: CRPPFFCIPVPQFVLLGWSQLVD*LPDKHQ
Trigger: CTGGTGTTTATCTGGCAGCCAATCAACAAGCTGGCT...CCATCCGAGGAGAACAAACTGAGGCACGGGGATGCAGAAGAAGGGAGGACGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024794.12
ENSMUST00000159988.2
CDS-3UTR CCA 90 bp TTATTATACGGCAGAAAGCACCCCTTCTTTTCTATGTCTAAGGAGAAAGGACAAAGCCAGCTTGTTGATTaGCTGCCAGATAAACACCAG +
Preference number: 4 (lower is better)
Translates to: LLYGRKHPFFSMSKEKGQSQLVD*LPDKHQ
Trigger: CTGGTGTTTATCTGGCAGCCAATCAACAAGCTGGCT...TTGTCCTTTCTCCTTAGACATAGAAAAGAAGGGGTGCTTTCTGCCGTATAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024794.12
CDS CCA 90 bp CCAGGCCAGGTAGGGCAGGAGGAGCAGAGCAGCCAGCTTGTTGATTaGCTGCCAGATAAACACCAGGCTTGCTACCAGTCCATAGAGCAG +
Preference number: 5 (lower is better)
Translates to: PGQVGQEEQSSQLVD*LPDKHQACYQSIEQ
Trigger: CTGCTCTATGGACTGGTAGCAAGCCTGGTGTTTATCTGGCAGCCAATCAACAAGCTGGCTGCTCTGCTCCTCCTGCCCTACCTGGCCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024794.12
ENSMUST00000159988.2
CDS CCA 90 bp CCCTCCGAGTTCCTTCCATACCAGGTAGGAGGCATAGCGACTGGATaGCTGATGAATGAGCATACAAATCAGGATGGGCCCCAGCAGGGG +
Preference number: 5 (lower is better)
Translates to: PSEFLPYQVGGIATG*LMNEHTNQDGPQQG
Trigger: CCCCTGCTGGGGCCCATCCTGATTTGTATGCTCATTCATCAGCCATCCAGTCGCTATGCCTCCTACCTGGTATGGAAGGAACTCGGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159988.2
CDS TCA 90 bp CCTTCCATACCAGGTAGGAGGCATAGCGACTGGATGGCTGATGAATaGGCATACAAATCAGGATGGGCCCCAGCAGGGGCACACCTACAA +
Preference number: 5 (lower is better)
Translates to: PSIPGRRHSDWMADE*AYKSGWAPAGAHLQ
Trigger: TTGTAGGTGTGCCCCTGCTGGGGCCCATCCTGATTTGTATGCTCATTCATCAGCCATCCAGTCGCTATGCCTCCTACCTGGTATGGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159988.2
CDS TCA 72 bp CCAGGTAGGAGGCATAGCGACTGGATGGCTGATGAATaGGCATACAAATCAGGATGGGCCCCAGCAGGGGCA +
Preference number: 6 (lower is better)
Translates to: PGRRHSDWMADE*AYKSGWAPAGA
Trigger: TGCCCCTGCTGGGGCCCATCCTGATTTGTATGCTCATTCATCAGCCATCCAGTCGCTATGCCTCCTACCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159988.2
CDS CCA 72 bp GTAGGGCAGGAGGAGCAGAGCAGCCAGCTTGTTGATTaGCTGCCAGATAAACACCAGGCTTGCTACCAGTCC +
Preference number: 6 (lower is better)
Translates to: VGQEEQSSQLVD*LPDKHQACYQS
Trigger: GGACTGGTAGCAAGCCTGGTGTTTATCTGGCAGCCAATCAACAAGCTGGCTGCTCTGCTCCTCCTGCCCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024794.12
ENSMUST00000159988.2
CDS TCA 72 bp TTCTCTCATCCTCACACCGACTGGATGGCTGATGAATaGGCATACAAATCAGGATGGGCCCCAGCAGGGGCA +
Preference number: 6 (lower is better)
Translates to: FSHPHTDWMADE*AYKSGWAPAGA
Trigger: TGCCCCTGCTGGGGCCCATCCTGATTTGTATGCTCATTCATCAGCCATCCAGTCGGTGTGAGGATGAGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024794.12
ENSMUST00000162481.2
CDS CCA 72 bp TTCCTTCCATACCAGGTAGGAGGCATAGCGACTGGATaGCTGATGAATGAGCATACAAATCAGGATGGGCCC +
Preference number: 6 (lower is better)
Translates to: FLPYQVGGIATG*LMNEHTNQDGP
Trigger: GGGCCCATCCTGATTTGTATGCTCATTCATCAGCCATCCAGTCGCTATGCCTCCTACCTGGTATGGAAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159988.2