Pregenerated sensors for TSPO2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023995Ensembl transcript IDs: ENSMUST00000024794.12, ENSMUST00000159988.2, ENSMUST00000162481.2
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | CCCGTGCCTCAGTTTGTTCTCCTCGGATGGCTAAGGCTGGTACGTTaGACACAAGCTGTCCCTCCACAGGCGGTAGGTGATGGCGGTGGT | + |
Preference number: 1 (lower is better) Translates to: PVPQFVLLGWLRLVR*TQAVPPQAVGDGGG Trigger: ACCACCGCCATCACCTACCGCCTGTGGAGGGACAGCTTGTGTCCAACGTACCAGCCTTAGCCATCCGAGGAGAACAAACTGAGGCACGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162481.2 |
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3UTR CCA 90 bp | CCTCCCTTCTTCTGCATCCCCGTGCCTCAGTTTGTTCTCCTCGGATaGCTAAGGCTGGTACGTTGGACACAAGCTGTCCCTCCACAGGCG | + |
Preference number: 1 (lower is better) Translates to: PPFFCIPVPQFVLLG*LRLVRWTQAVPPQA Trigger: CGCCTGTGGAGGGACAGCTTGTGTCCAACGTACCAGCCTTAGCCATCCGAGGAGAACAAACTGAGGCACGGGGATGCAGAAGAAGGGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162481.2 |
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3UTR-3UTR CCA 90 bp | CCCTTCTTCTGCATCCCCGTGCCTCAGTTTGTTCTCCTCGGATGGCTAAGGCTGAGCCAGCTTGTTGATTaGCTGCCAGATAAACACCAG | + |
Preference number: 2 (lower is better) Translates to: PFFCIPVPQFVLLGWLRLSQLVD*LPDKHQ Trigger: CTGGTGTTTATCTGGCAGCCAATCAACAAGCTGGCT...CAGCCTTAGCCATCCGAGGAGAACAAACTGAGGCACGGGGATGCAGAAGAAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162481.2 |
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3UTR GCA 72 bp | CCAGCTACTCCAGCTTCTTGCCGTCCTCCCTTCTTCTaGATCCCCGTGCCTCAGTTTGTTCTCCTCGGATGG | + |
Preference number: 3 (lower is better) Translates to: PATPASCRPPFF*IPVPQFVLLGW Trigger: CCATCCGAGGAGAACAAACTGAGGCACGGGGATGCAGAAGAAGGGAGGACGGCAAGAAGCTGGAGTAGCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024794.12 ENSMUST00000162481.2 |
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3UTR GCA 72 bp | TCAAGTATCCCTAGCTCCCCAGCTACTCCAGCTTCTTaGCGTCCTCCCTTCTTCTGCATCCCCGTGCCTCAG | + |
Preference number: 3 (lower is better) Translates to: SSIPSSPATPAS*RPPFFCIPVPQ Trigger: CTGAGGCACGGGGATGCAGAAGAAGGGAGGACGGCAAGAAGCTGGAGTAGCTGGGGAGCTAGGGATACTTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024794.12 ENSMUST00000162481.2 |
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3UTR CCA 72 bp | CAGTTTGTTCTCCTCGGATGGCTAAGGCTGGTACGTTaGACACAAGCTGTCCCTCCACAGGCGGTAGGTGAT | + |
Preference number: 3 (lower is better) Translates to: QFVLLGWLRLVR*TQAVPPQAVGD Trigger: ATCACCTACCGCCTGTGGAGGGACAGCTTGTGTCCAACGTACCAGCCTTAGCCATCCGAGGAGAACAAACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162481.2 |
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3UTR CCA 72 bp | TTCTGCATCCCCGTGCCTCAGTTTGTTCTCCTCGGATaGCTAAGGCTGGTACGTTGGACACAAGCTGTCCCT | + |
Preference number: 3 (lower is better) Translates to: FCIPVPQFVLLG*LRLVRWTQAVP Trigger: AGGGACAGCTTGTGTCCAACGTACCAGCCTTAGCCATCCGAGGAGAACAAACTGAGGCACGGGGATGCAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162481.2 |
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CDS-3UTR TCA 90 bp | TGGCTAAGGCTGGTACGTTGGACACAAGCTGTCCCTCCACAGGCGGTAGGTGATTCCAGGAGGGCCCCATaGCAGAGTAGATGGTCACCC | + |
Preference number: 4 (lower is better) Translates to: WLRLVRWTQAVPPQAVGDSRRAP*QSRWSP Trigger: GGGTGACCATCTACTCTGTCATGGGGCCCTCCTGGA...ATCACCTACCGCCTGTGGAGGGACAGCTTGTGTCCAACGTACCAGCCTTAGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162481.2 |
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CDS-3UTR TCA 90 bp | TCTTGCCGTCCTCCCTTCTTCTGCATCCCCGTGCCTCAGTTTGTTCTCCTCGGAAGCAATATGACCTTGTaGGGTGGGCACCAGGGTAAC | + |
Preference number: 4 (lower is better) Translates to: SCRPPFFCIPVPQFVLLGSNMTL*GGHQGN Trigger: GTTACCCTGGTGCCCACCTCACAAGGTCATATTGCT...TCCGAGGAGAACAAACTGAGGCACGGGGATGCAGAAGAAGGGAGGACGGCAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024794.12 ENSMUST00000162481.2 |
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CDS-3UTR CCA 90 bp | TGCCGTCCTCCCTTCTTCTGCATCCCCGTGCCTCAGTTTGTTCTCCTCGGATGGAGCCAGCTTGTTGATTaGCTGCCAGATAAACACCAG | + |
Preference number: 4 (lower is better) Translates to: CRPPFFCIPVPQFVLLGWSQLVD*LPDKHQ Trigger: CTGGTGTTTATCTGGCAGCCAATCAACAAGCTGGCT...CCATCCGAGGAGAACAAACTGAGGCACGGGGATGCAGAAGAAGGGAGGACGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024794.12 ENSMUST00000159988.2 |
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CDS-3UTR CCA 90 bp | TTATTATACGGCAGAAAGCACCCCTTCTTTTCTATGTCTAAGGAGAAAGGACAAAGCCAGCTTGTTGATTaGCTGCCAGATAAACACCAG | + |
Preference number: 4 (lower is better) Translates to: LLYGRKHPFFSMSKEKGQSQLVD*LPDKHQ Trigger: CTGGTGTTTATCTGGCAGCCAATCAACAAGCTGGCT...TTGTCCTTTCTCCTTAGACATAGAAAAGAAGGGGTGCTTTCTGCCGTATAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024794.12 |
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CDS CCA 90 bp | CCAGGCCAGGTAGGGCAGGAGGAGCAGAGCAGCCAGCTTGTTGATTaGCTGCCAGATAAACACCAGGCTTGCTACCAGTCCATAGAGCAG | + |
Preference number: 5 (lower is better) Translates to: PGQVGQEEQSSQLVD*LPDKHQACYQSIEQ Trigger: CTGCTCTATGGACTGGTAGCAAGCCTGGTGTTTATCTGGCAGCCAATCAACAAGCTGGCTGCTCTGCTCCTCCTGCCCTACCTGGCCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024794.12 ENSMUST00000159988.2 |
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CDS CCA 90 bp | CCCTCCGAGTTCCTTCCATACCAGGTAGGAGGCATAGCGACTGGATaGCTGATGAATGAGCATACAAATCAGGATGGGCCCCAGCAGGGG | + |
Preference number: 5 (lower is better) Translates to: PSEFLPYQVGGIATG*LMNEHTNQDGPQQG Trigger: CCCCTGCTGGGGCCCATCCTGATTTGTATGCTCATTCATCAGCCATCCAGTCGCTATGCCTCCTACCTGGTATGGAAGGAACTCGGAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159988.2 |
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CDS TCA 90 bp | CCTTCCATACCAGGTAGGAGGCATAGCGACTGGATGGCTGATGAATaGGCATACAAATCAGGATGGGCCCCAGCAGGGGCACACCTACAA | + |
Preference number: 5 (lower is better) Translates to: PSIPGRRHSDWMADE*AYKSGWAPAGAHLQ Trigger: TTGTAGGTGTGCCCCTGCTGGGGCCCATCCTGATTTGTATGCTCATTCATCAGCCATCCAGTCGCTATGCCTCCTACCTGGTATGGAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159988.2 |
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CDS TCA 72 bp | CCAGGTAGGAGGCATAGCGACTGGATGGCTGATGAATaGGCATACAAATCAGGATGGGCCCCAGCAGGGGCA | + |
Preference number: 6 (lower is better) Translates to: PGRRHSDWMADE*AYKSGWAPAGA Trigger: TGCCCCTGCTGGGGCCCATCCTGATTTGTATGCTCATTCATCAGCCATCCAGTCGCTATGCCTCCTACCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159988.2 |
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CDS CCA 72 bp | GTAGGGCAGGAGGAGCAGAGCAGCCAGCTTGTTGATTaGCTGCCAGATAAACACCAGGCTTGCTACCAGTCC | + |
Preference number: 6 (lower is better) Translates to: VGQEEQSSQLVD*LPDKHQACYQS Trigger: GGACTGGTAGCAAGCCTGGTGTTTATCTGGCAGCCAATCAACAAGCTGGCTGCTCTGCTCCTCCTGCCCTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024794.12 ENSMUST00000159988.2 |
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CDS TCA 72 bp | TTCTCTCATCCTCACACCGACTGGATGGCTGATGAATaGGCATACAAATCAGGATGGGCCCCAGCAGGGGCA | + |
Preference number: 6 (lower is better) Translates to: FSHPHTDWMADE*AYKSGWAPAGA Trigger: TGCCCCTGCTGGGGCCCATCCTGATTTGTATGCTCATTCATCAGCCATCCAGTCGGTGTGAGGATGAGAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024794.12 ENSMUST00000162481.2 |
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CDS CCA 72 bp | TTCCTTCCATACCAGGTAGGAGGCATAGCGACTGGATaGCTGATGAATGAGCATACAAATCAGGATGGGCCC | + |
Preference number: 6 (lower is better) Translates to: FLPYQVGGIATG*LMNEHTNQDGP Trigger: GGGCCCATCCTGATTTGTATGCTCATTCATCAGCCATCCAGTCGCTATGCCTCCTACCTGGTATGGAAGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159988.2 |