RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TSPO (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041736

Ensembl transcript IDs: ENSMUST00000047419.8, ENSMUST00000208463.2

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGCTAAGACCAGGTAGACCAGCAGGCCCAATGGTCATAAAAGCATaGTGGCTGCCACCCATGGTGCCTGGCTGGCAGGGCTGCATTCCT +
Preference number: 1 (lower is better)
Translates to: GLRPGRPAGPMVIKA*WLPPMVPGWQGCIP
Trigger: AGGAATGCAGCCCTGCCAGCCAGGCACCATGGGTGGCAGCCATCATGCTTTTATGACCATTGGGCCTGCTGGTCTACCTGGTCTTAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
3UTR GCA 90 bp TATTTAGCTTTAAAACACCATGCTCTAAGGGCATGCCTGGAGCAGTaGAGAAAGGCAGGTATAACTGTGTCTGCAGGAGACTCGGCACTG +
Preference number: 1 (lower is better)
Translates to: YLALKHHALRACLEQ*RKAGITVSAGDSAL
Trigger: CAGTGCCGAGTCTCCTGCAGACACAGTTATACCTGCCTTTCTGCACTGCTCCAGGCATGCCCTTAGAGCATGGTGTTTTAAAGCTAAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
3UTR-3UTR CCA 90 bp GTGTCTGCAGGAGACTCGGCACTGACCACCCTAACCTACCTGGTGGCTTCCTGGGATGGCTGCCACCCATaGTGCCTGGCTGGCAGGGCT +
Preference number: 2 (lower is better)
Translates to: VSAGDSALTTLTYLVASWDGCHP*CLAGRA
Trigger: AGCCCTGCCAGCCAGGCACCATGGGTGGCAGCCATC...CCAGGAAGCCACCAGGTAGGTTAGGGTGGTCAGTGCCGAGTCTCCTGCAGACAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
3UTR-3UTR GCA 90 bp TGGTGGCTTCCTGGGCTAAGACCAGGTAGACCAGCAGGCCCAATGGTCATAAAAGGCTGCCACCCATGGTaGCTGGCTGGCAGGGCTGCA +
Preference number: 2 (lower is better)
Translates to: WWLPGLRPGRPAGPMVIKGCHPW*LAGRAA
Trigger: TGCAGCCCTGCCAGCCAGGCACCATGGGTGGCAGCC...TTTTATGACCATTGGGCCTGCTGGTCTACCTGGTCTTAGCCCAGGAAGCCACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
3UTR-3UTR CCA 90 bp TTAGCTTTAAAACACCATGCTCTAAGGGCATGCCTGGAGCAGTGCAGAAAGGCAGCCACCCATGGTGCCTaGCTGGCAGGGCTGCATTCC +
Preference number: 2 (lower is better)
Translates to: LALKHHALRACLEQCRKAATHGA*LAGLHS
Trigger: GGAATGCAGCCCTGCCAGCCAGGCACCATGGGTGGC...TGCCTTTCTGCACTGCTCCAGGCATGCCCTTAGAGCATGGTGTTTTAAAGCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
3UTR-3UTR CCA 90 bp TATTTAGCTTTAAAACACCATGCTCTAAGGGCATGCCTGGAGCAGTGCAGAAAGCCCATGGTGCCTGGCTaGCAGGGCTGCATTCCTGAT +
Preference number: 2 (lower is better)
Translates to: YLALKHHALRACLEQCRKPMVPG*QGCIPD
Trigger: ATCAGGAATGCAGCCCTGCCAGCCAGGCACCATGGG...CTTTCTGCACTGCTCCAGGCATGCCCTTAGAGCATGGTGTTTTAAAGCTAAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
3UTR TCA 72 bp CCAGGTAGACCAGCAGGCCCAATGGTCATAAAAGCATaGTGGCTGCCACCCATGGTGCCTGGCTGGCAGGGC +
Preference number: 3 (lower is better)
Translates to: PGRPAGPMVIKA*WLPPMVPGWQG
Trigger: GCCCTGCCAGCCAGGCACCATGGGTGGCAGCCATCATGCTTTTATGACCATTGGGCCTGCTGGTCTACCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
3UTR GCA 72 bp TTAAAACACCATGCTCTAAGGGCATGCCTGGAGCAGTaGAGAAAGGCAGGTATAACTGTGTCTGCAGGAGAC +
Preference number: 3 (lower is better)
Translates to: LKHHALRACLEQ*RKAGITVSAGD
Trigger: GTCTCCTGCAGACACAGTTATACCTGCCTTTCTGCACTGCTCCAGGCATGCCCTTAGAGCATGGTGTTTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
3UTR GCA 72 bp CTTTATTTAGCTTTAAAACACCATGCTCTAAGGGCATaGCTGGAGCAGTGCAGAAAGGCAGGTATAACTGTG +
Preference number: 3 (lower is better)
Translates to: LYLALKHHALRA*LEQCRKAGITV
Trigger: CACAGTTATACCTGCCTTTCTGCACTGCTCCAGGCATGCCCTTAGAGCATGGTGTTTTAAAGCTAAATAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
3UTR GCA 72 bp ATGAAGTTAGAGACTTTATTTAGCTTTAAAACACCATaGTCTAAGGGCATGCCTGGAGCAGTGCAGAAAGGC +
Preference number: 3 (lower is better)
Translates to: MKLETLFSFKTP*SKGMPGAVQKG
Trigger: GCCTTTCTGCACTGCTCCAGGCATGCCCTTAGAGCATGGTGTTTTAAAGCTAAATAAAGTCTCTAACTTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
CDS-3UTR TCA 90 bp GACTCGGCACTGACCACCCTAACCTACCTGGTGGCTTCCTGGGCTAAGACCAGGGGCTGGGCACCAGAGTaGGGCCCACGGCAGGCACCC +
Preference number: 4 (lower is better)
Translates to: DSALTTLTYLVASWAKTRGWAPE*GPRQAP
Trigger: GGGTGCCTGCCGTGGGCCTCACTCTGGTGCCCAGCC...CCTGGTCTTAGCCCAGGAAGCCACCAGGTAGGTTAGGGTGGTCAGTGCCGAGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
CDS-3UTR GCA 90 bp CATGATGGCTGCCACCCATGGTGCCTGGCTGGCAGGGCTGCATTCCTGATGGCTGTCCAGCGAGGCGGATaGCAAGAGGGTTTCTGCAAG +
Preference number: 4 (lower is better)
Translates to: HDGCHPWCLAGRAAFLMAVQRGG*QEGFCK
Trigger: CTTGCAGAAACCCTCTTGGCATCCGCCTCGCTGGAC...AGCCATCAGGAATGCAGCCCTGCCAGCCAGGCACCATGGGTGGCAGCCATCATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
CDS-3UTR GCA 90 bp GTGTCTGCAGGAGACTCGGCACTGACCACCCTAACCTACCTGGTGGCTTCCTGGAAGGCCCAGCCCATCTaGCGGGCACCAAAGAAGATG +
Preference number: 4 (lower is better)
Translates to: VSAGDSALTTLTYLVASWKAQPI*RAPKKM
Trigger: CATCTTCTTTGGTGCCCGGCAGATGGGCTGGGCCTT...CCAGGAAGCCACCAGGTAGGTTAGGGTGGTCAGTGCCGAGTCTCCTGCAGACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
CDS-3UTR GCA 90 bp GTGTCTGCAGGAGACTCGGCACTGACCACCCTAACCTACCTGGTGGCTTCCTGGTGGCTGAATACAGTGTaGCCCAGATGGGAGCCAGTG +
Preference number: 4 (lower is better)
Translates to: VSAGDSALTTLTYLVASWWLNTV*PRWEPV
Trigger: CACTGGCTCCCATCTGGGGCACACTGTATTCAGCCA...CCAGGAAGCCACCAGGTAGGTTAGGGTGGTCAGTGCCGAGTCTCCTGCAGACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
CDS-3UTR TCA 90 bp TGGTGGCTTCCTGGGCTAAGACCAGGTAGACCAGCAGGCCCAATGGTCATAAAAGCCATACCCCATGGCTaGATACAGTGTGCCCCAGAT +
Preference number: 4 (lower is better)
Translates to: WWLPGLRPGRPAGPMVIKAIPHG*IQCAPD
Trigger: ATCTGGGGCACACTGTATTCAGCCATGGGGTATGGC...TTTTATGACCATTGGGCCTGCTGGTCTACCTGGTCTTAGCCCAGGAAGCCACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
CDS-3UTR GCA 90 bp TGGTGGCTTCCTGGGCTAAGACCAGGTAGACCAGCAGGCCCAATGGTCATAAAATGCCAAGAGGGTTTCTaGAAGCTAGCATACCACCGG +
Preference number: 4 (lower is better)
Translates to: WWLPGLRPGRPAGPMVIKCQEGF*KLAYHR
Trigger: CCGGTGGTATGCTAGCTTGCAGAAACCCTCTTGGCA...TTTTATGACCATTGGGCCTGCTGGTCTACCTGGTCTTAGCCCAGGAAGCCACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
CDS-3UTR CCA 90 bp TTAGCTTTAAAACACCATGCTCTAAGGGCATGCCTGGAGCAGTGCAGAAAGGCAAGGAGCCATACCCCATaGCTGAATACAGTGTGCCCC +
Preference number: 4 (lower is better)
Translates to: LALKHHALRACLEQCRKARSHTP*LNTVCP
Trigger: GGGGCACACTGTATTCAGCCATGGGGTATGGCTCCT...TGCCTTTCTGCACTGCTCCAGGCATGCCCTTAGAGCATGGTGTTTTAAAGCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
CDS-3UTR CCA 90 bp TTAGAGACTTTATTTAGCTTTAAAACACCATGCTCTAAGGGCATGCCTGGAGCAGGGCACCAAAGAAGATaGGGGGCCACGCCCAGTTCA +
Preference number: 4 (lower is better)
Translates to: LETLFSFKTPCSKGMPGAGHQRR*GATPSS
Trigger: TGAACTGGGCGTGGCCCCCCATCTTCTTTGGTGCCC...TGCTCCAGGCATGCCCTTAGAGCATGGTGTTTTAAAGCTAAATAAAGTCTCTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
CDS-3UTR CAA 90 bp CATGATGGCTGCCACCCATGGTGCCTGGCTGGCAGGGCTGCATTCCTGATGGCTGGTGCCAAGCCAGGGTaGTGGCAGTCGCCACCCCAC +
Preference number: 5 (lower is better)
Translates to: HDGCHPWCLAGRAAFLMAGAKPG*WQSPPH
Trigger: GTGGGGTGGCGACTGCCACAACCCTGGCTTGGCACC...AGCCATCAGGAATGCAGCCCTGCCAGCCAGGCACCATGGGTGGCAGCCATCATG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
CDS CCA 90 bp GAAGATCGGCCAAGGCCCAGCCCATCTGCCGGGCACCAAAGAAGATaGGGGGCCACGCCCAGTTCAGAGCCAGCTGACCAGTGTAGAGAC +
Preference number: 5 (lower is better)
Translates to: EDRPRPSPSAGHQRR*GATPSSEPADQCRD
Trigger: GTCTCTACACTGGTCAGCTGGCTCTGAACTGGGCGTGGCCCCCCATCTTCTTTGGTGCCCGGCAGATGGGCTGGGCCTTGGCCGATCTTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
CDS GCA 90 bp GAATACAGTGTGCCCCAGATGGGAGCCAGTGTCCAGCGAGGCGGATaGCAAGAGGGTTTCTGCAAGCTAGCATACCACCGGAGGCCCTCG +
Preference number: 5 (lower is better)
Translates to: EYSVPQMGASVQRGG*QEGFCKLAYHRRPS
Trigger: CGAGGGCCTCCGGTGGTATGCTAGCTTGCAGAAACCCTCTTGGCATCCGCCTCGCTGGACACTGGCTCCCATCTGGGGCACACTGTATTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047419.8
ENSMUST00000208463.2
CDS TCA 90 bp GGGAGCCCCCTCGCCGGCCAGAGTTATCACGCCATACATAGTAGTTaGGCACGGTGGCAAAAGCCAGCCAGGCCAGGTAAGGGTACAGCA +
Preference number: 5 (lower is better)
Translates to: GSPLAGQSYHAIHSS*ARWQKPARPGKGTA
Trigger: TGCTGTACCCTTACCTGGCCTGGCTGGCTTTTGCCACCGTGCTCAACTACTATGTATGGCGTGATAACTCTGGCCGGCGAGGGGGCTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
CDS CCA 90 bp CTATGTAGGAGCCATACCCCATGGCTGAATACAGTGTGCCCCAGATaGGAGCCAGTGTCCAGCGAGGCGGATGCCAAGAGGGTTTCTGCA +
Preference number: 5 (lower is better)
Translates to: LCRSHTPWLNTVCPR*EPVSSEADAKRVSA
Trigger: TGCAGAAACCCTCTTGGCATCCGCCTCGCTGGACACTGGCTCCCATCTGGGGCACACTGTATTCAGCCATGGGGTATGGCTCCTACATAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047419.8
ENSMUST00000208463.2
CDS CCA 72 bp CCAAGGCCCAGCCCATCTGCCGGGCACCAAAGAAGATaGGGGGCCACGCCCAGTTCAGAGCCAGCTGACCAG +
Preference number: 6 (lower is better)
Translates to: PRPSPSAGHQRR*GATPSSEPADQ
Trigger: CTGGTCAGCTGGCTCTGAACTGGGCGTGGCCCCCCATCTTCTTTGGTGCCCGGCAGATGGGCTGGGCCTTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
CDS GCA 72 bp GCCAGTGTCCAGCGAGGCGGATGCCAAGAGGGTTTCTaGAAGCTAGCATACCACCGGAGGCCCTCGCCACGT +
Preference number: 6 (lower is better)
Translates to: ASVQRGGCQEGF*KLAYHRRPSPR
Trigger: ACGTGGCGAGGGCCTCCGGTGGTATGCTAGCTTGCAGAAACCCTCTTGGCATCCGCCTCGCTGGACACTGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047419.8
ENSMUST00000208463.2
CDS GCA 72 bp GTGCCCCAGATGGGAGCCAGTGTCCAGCGAGGCGGATaGCAAGAGGGTTTCTGCAAGCTAGCATACCACCGG +
Preference number: 6 (lower is better)
Translates to: VPQMGASVQRGG*QEGFCKLAYHR
Trigger: CCGGTGGTATGCTAGCTTGCAGAAACCCTCTTGGCATCCGCCTCGCTGGACACTGGCTCCCATCTGGGGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047419.8
ENSMUST00000208463.2
CDS CCA 72 bp AGCCATACCCCATGGCTGAATACAGTGTGCCCCAGATaGGAGCCAGTGTCCAGCGAGGCGGATGCCAAGAGG +
Preference number: 6 (lower is better)
Translates to: SHTPWLNTVCPR*EPVSSEADAKR
Trigger: CCTCTTGGCATCCGCCTCGCTGGACACTGGCTCCCATCTGGGGCACACTGTATTCAGCCATGGGGTATGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047419.8
ENSMUST00000208463.2
CDS GCA 72 bp CTATGTAGGAGCCATACCCCATGGCTGAATACAGTGTaGCCCAGATGGGAGCCAGTGTCCAGCGAGGCGGAT +
Preference number: 6 (lower is better)
Translates to: LCRSHTPWLNTV*PRWEPVSSEAD
Trigger: ATCCGCCTCGCTGGACACTGGCTCCCATCTGGGGCACACTGTATTCAGCCATGGGGTATGGCTCCTACATAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047419.8
ENSMUST00000208463.2
CDS TCA 72 bp CTCGCCGGCCAGAGTTATCACGCCATACATAGTAGTTaGGCACGGTGGCAAAAGCCAGCCAGGCCAGGTAAG +
Preference number: 6 (lower is better)
Translates to: LAGQSYHAIHSS*ARWQKPARPGK
Trigger: CTTACCTGGCCTGGCTGGCTTTTGCCACCGTGCTCAACTACTATGTATGGCGTGATAACTCTGGCCGGCGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047419.8
CDS CCA 72 bp CCAGCTCTTTCCAGACTATGTAGGAGCCATACCCCATaGCTGAATACAGTGTGCCCCAGATGGGAGCCAGTG +
Preference number: 6 (lower is better)
Translates to: PALSRLCRSHTP*LNTVCPRWEPV
Trigger: CACTGGCTCCCATCTGGGGCACACTGTATTCAGCCATGGGGTATGGCTCCTACATAGTCTGGAAAGAGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047419.8
ENSMUST00000208463.2
CDS TCA 72 bp CTCTTTCCAGACTATGTAGGAGCCATACCCCATGGCTaGATACAGTGTGCCCCAGATGGGAGCCAGTGTCCA +
Preference number: 6 (lower is better)
Translates to: LFPDYVGAIPHG*IQCAPDGSQCP
Trigger: TGGACACTGGCTCCCATCTGGGGCACACTGTATTCAGCCATGGGGTATGGCTCCTACATAGTCTGGAAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047419.8
ENSMUST00000208463.2