Pregenerated sensors for TSPAN8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034127Ensembl transcript IDs: ENSMUST00000035563.15, ENSMUST00000080630.11, ENSMUST00000179196.3, ENSMUST00000217900.2
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATCTTGTCACTTAGAAACGTGCTTATTCCACTGGGACGCTCCAGATaGTCATCTCTAGAGACACAGAGCCACTTGGACACAATGGCCAGA | + |
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Preference number: 1 (lower is better) Translates to: ILSLRNVLIPLGRSR*SSLETQSHLDTMAR Trigger: TCTGGCCATTGTGTCCAAGTGGCTCTGTGTCTCTAGAGATGATCATCTGGAGCGTCCCAGTGGAATAAGCACGTTTCTAAGTGACAAGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179196.3 |
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| 3UTR-3UTR GCA 90 bp | CGTGCTTATTCCACTGGGACGCTCCAGATGATCATCTCTAGAGACACAGAGCCAAAGATATCTGTAGACTaGCTCAGTGAGATACTTCAA | + |
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Preference number: 2 (lower is better) Translates to: RAYSTGTLQMIISRDTEPKISVD*LSEILQ Trigger: TTGAAGTATCTCACTGAGGCAGTCTACAGATATCTT...TGGCTCTGTGTCTCTAGAGATGATCATCTGGAGCGTCCCAGTGGAATAAGCACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179196.3 |
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| 3UTR TCA 72 bp | GTGAATACCTGTGAAGATATCTGTAGACTGCCTCAGTaGGATACTTCAATAACATTTATTTACAGTATTCGA | + |
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Preference number: 3 (lower is better) Translates to: VNTCEDICRLPQ*DTSITFIYSIR Trigger: TCGAATACTGTAAATAAATGTTATTGAAGTATCTCACTGAGGCAGTCTACAGATATCTTCACAGGTATTCAC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS-3UTR GCA 90 bp | AAAATCCCAGATCCCAGATTCACTGCCCTAGAGTCTGTGATCTTGTCACTTAGAATGCCTGCTGCCACTTaGAGAATCAGAATCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: KIPDPRFTALESVILSLRMPAAT*RIRISS Trigger: GCTGCTGATTCTGATTCTGCAAGTGGCAGCAGGCAT...TCTAAGTGACAAGATCACAGACTCTAGGGCAGTGAATCTGGGATCTGGGATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179196.3 |
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| CDS-3UTR GCA 90 bp | CCTTCACAGTTAAATACAGTGAATACCTGTGAAGATATCTGTAGACTGCCTCAGAAGCGGCTCCTAGGATaGCTGCTGCCACTTGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: PSQLNTVNTCEDICRLPQKRLLG*LLPLAE Trigger: TTCTGCAAGTGGCAGCAGGCATCCTAGGAGCCGCTT...CTGAGGCAGTCTACAGATATCTTCACAGGTATTCACTGTATTTAACTGTGAAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS-3UTR GCA 90 bp | CCTTCACAGTTAAATACAGTGAATACCTGTGAAGATATCTGTAGACTGCCTCAGATGCCTGCTGCCACTTaGAGAATCAGAATCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: PSQLNTVNTCEDICRLPQMPAAT*RIRISS Trigger: GCTGCTGATTCTGATTCTGCAAGTGGCAGCAGGCAT...CTGAGGCAGTCTACAGATATCTTCACAGGTATTCACTGTATTTAACTGTGAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS-3UTR TCA 90 bp | CCTTCACAGTTAAATACAGTGAATACCTGTGAAGATATCTGTAGACTGCCTCAGCACTTGAACTCCGACTaGAACACAATCATGGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: PSQLNTVNTCEDICRLPQHLNSD*NTIMAF Trigger: GAAGGCCATGATTGTGTTTCAGTCGGAGTTCAAGTG...CTGAGGCAGTCTACAGATATCTTCACAGGTATTCACTGTATTTAACTGTGAAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS-3UTR CCA 90 bp | CCTTCACAGTTAAATACAGTGAATACCTGTGAAGATATCTGTAGACTGCCTCAGTTACTCTCACCCATATaGCCAGTCCCAAGATCAGTG | + |
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Preference number: 4 (lower is better) Translates to: PSQLNTVNTCEDICRLPQLLSPI*PVPRSV Trigger: CACTGATCTTGGGACTGGCCATATGGGTGAGAGTAA...CTGAGGCAGTCTACAGATATCTTCACAGGTATTCACTGTATTTAACTGTGAAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS-3UTR GCA 90 bp | AAAATCCCAGATCCCAGATTCACTGCCCTAGAGTCTGTGATCTTGTCACTTAGATCTCTTTTCCATCTTTaGTTACTCTCACCCATATGG | + |
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Preference number: 4 (lower is better) Translates to: KIPDPRFTALESVILSLRSLFHL*LLSPIW Trigger: CCATATGGGTGAGAGTAAGCAAAGATGGAAAAGAGA...TCTAAGTGACAAGATCACAGACTCTAGGGCAGTGAATCTGGGATCTGGGATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179196.3 |
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| CDS-3UTR GCA 90 bp | CCTTCACAGTTAAATACAGTGAATACCTGTGAAGATATCTGTAGACTGCCTCAGTCTCTTTTCCATCTTTaGTTACTCTCACCCATATGG | + |
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Preference number: 4 (lower is better) Translates to: PSQLNTVNTCEDICRLPQSLFHL*LLSPIW Trigger: CCATATGGGTGAGAGTAAGCAAAGATGGAAAAGAGA...CTGAGGCAGTCTACAGATATCTTCACAGGTATTCACTGTATTTAACTGTGAAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS-3UTR CAA 90 bp | CGTGCTTATTCCACTGGGACGCTCCAGATGATCATCTCTAGAGACACAGAGCCACCTTCTGGAAGTCTTTaGCCTCATCAGTGTTGTCCG | + |
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Preference number: 5 (lower is better) Translates to: RAYSTGTLQMIISRDTEPPSGSL*PHQCCP Trigger: CGGACAACACTGATGAGGCAAAAGACTTCCAGAAGG...TGGCTCTGTGTCTCTAGAGATGATCATCTGGAGCGTCCCAGTGGAATAAGCACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179196.3 |
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| CDS-3UTR CAA 90 bp | CGTGCTTATTCCACTGGGACGCTCCAGATGATCATCTCTAGAGACACAGAGCCAAACTCCCCTGATAAGTaGCACAGTCAGTTCCTGTAC | + |
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Preference number: 5 (lower is better) Translates to: RAYSTGTLQMIISRDTEPNSPDK*HSQFLY Trigger: GTACAGGAACTGACTGTGCAACTTATCAGGGGAGTT...TGGCTCTGTGTCTCTAGAGATGATCATCTGGAGCGTCCCAGTGGAATAAGCACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179196.3 |
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| CDS TCA 90 bp | AATTATTTCCCCAGTCGGCAGCTCCATTCTCCAAGCCACAGCACTTaGACTCCGACTGAAACACAATCATGGCCTTCTGGAAGTCTTTTG | + |
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Preference number: 5 (lower is better) Translates to: NYFPSRQLHSPSHST*TPTETQSWPSGSLL Trigger: CAAAAGACTTCCAGAAGGCCATGATTGTGTTTCAGTCGGAGTTCAAGTGCTGTGGCTTGGAGAATGGAGCTGCCGACTGGGGAAATAATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS-3UTR CAA 90 bp | AGATTCACTGCCCTAGAGTCTGTGATCTTGTCACTTAGAAACGTGCTTATTCCAGATGCCTGCTGCCACTaGCAGAATCAGAATCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: RFTALESVILSLRNVLIPDACCH*QNQNQQ Trigger: CTGCTGATTCTGATTCTGCAAGTGGCAGCAGGCATC...TGGAATAAGCACGTTTCTAAGTGACAAGATCACAGACTCTAGGGCAGTGAATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179196.3 |
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| CDS-3UTR CAA 90 bp | CCTTCACAGTTAAATACAGTGAATACCTGTGAAGATATCTGTAGACTGCCTCAGGATGCCTGCTGCCACTaGCAGAATCAGAATCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: PSQLNTVNTCEDICRLPQDACCH*QNQNQQ Trigger: CTGCTGATTCTGATTCTGCAAGTGGCAGCAGGCATC...CTGAGGCAGTCTACAGATATCTTCACAGGTATTCACTGTATTTAACTGTGAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS-3UTR CAA 90 bp | CCTTCACAGTTAAATACAGTGAATACCTGTGAAGATATCTGTAGACTGCCTCAGCCTTCTGGAAGTCTTTaGCCTCATCAGTGTTGTCCG | + |
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Preference number: 5 (lower is better) Translates to: PSQLNTVNTCEDICRLPQPSGSL*PHQCCP Trigger: CGGACAACACTGATGAGGCAAAAGACTTCCAGAAGG...CTGAGGCAGTCTACAGATATCTTCACAGGTATTCACTGTATTTAACTGTGAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS TCA 90 bp | CATTTTCATATAGCGTTTCATTCAGAATTCGGTTATACTCAGGTTTaGAAGCGGCTCCTAGGATGCCTGCTGCCACTTGCAGAATCAGAA | + |
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Preference number: 5 (lower is better) Translates to: HFHIAFHSEFGYTQV*KRLLGCLLPLAESE Trigger: TTCTGATTCTGCAAGTGGCAGCAGGCATCCTAGGAGCCGCTTTCAAACCTGAGTATAACCGAATTCTGAATGAAACGCTATATGAAAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS-3UTR CAA 90 bp | CCTTCACAGTTAAATACAGTGAATACCTGTGAAGATATCTGTAGACTGCCTCAGAACTCCCCTGATAAGTaGCACAGTCAGTTCCTGTAC | + |
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Preference number: 5 (lower is better) Translates to: PSQLNTVNTCEDICRLPQNSPDK*HSQFLY Trigger: GTACAGGAACTGACTGTGCAACTTATCAGGGGAGTT...CTGAGGCAGTCTACAGATATCTTCACAGGTATTCACTGTATTTAACTGTGAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS CCA 90 bp | AATGTTCTTTTCAAACAGATCTTTGATCAAAGAAAGACAGGTCTTTaGGTAAACGGAACTCCCCTGATAAGTTGCACAGTCAGTTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: NVLFKQIFDQRKTGL*VNGTPLISCTVSSC Trigger: ACAGGAACTGACTGTGCAACTTATCAGGGGAGTTCCGTTTACCCAAAGACCTGTCTTTCTTTGATCAAAGATCTGTTTGAAAAGAACATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS-3UTR CAA 90 bp | CCTTCACAGTTAAATACAGTGAATACCTGTGAAGATATCTGTAGACTGCCTCAGATCTCTTTTCCATCTTaGCTTACTCTCACCCATATG | + |
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Preference number: 5 (lower is better) Translates to: PSQLNTVNTCEDICRLPQISFPS*LTLTHM Trigger: CATATGGGTGAGAGTAAGCAAAGATGGAAAAGAGAT...CTGAGGCAGTCTACAGATATCTTCACAGGTATTCACTGTATTTAACTGTGAAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS TCA 72 bp | CCCAGTCGGCAGCTCCATTCTCCAAGCCACAGCACTTaGACTCCGACTGAAACACAATCATGGCCTTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: PSRQLHSPSHST*TPTETQSWPSG Trigger: TCCAGAAGGCCATGATTGTGTTTCAGTCGGAGTTCAAGTGCTGTGGCTTGGAGAATGGAGCTGCCGACTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS TCA 72 bp | ATAGCGTTTCATTCAGAATTCGGTTATACTCAGGTTTaGAAGCGGCTCCTAGGATGCCTGCTGCCACTTGCA | + |
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Preference number: 6 (lower is better) Translates to: IAFHSEFGYTQV*KRLLGCLLPLA Trigger: TGCAAGTGGCAGCAGGCATCCTAGGAGCCGCTTTCAAACCTGAGTATAACCGAATTCTGAATGAAACGCTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS CAA 72 bp | CTAGAGTCTCCTGACGTGATGATCTCTTTTCCATCTTaGCTTACTCTCACCCATATGGCCAGTCCCAAGATC | + |
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Preference number: 6 (lower is better) Translates to: LESPDVMISFPS*LTLTHMASPKI Trigger: GATCTTGGGACTGGCCATATGGGTGAGAGTAAGCAAAGATGGAAAAGAGATCATCACGTCAGGAGACTCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 ENSMUST00000217900.2 |
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| CDS CAA 72 bp | TATAGCGTTTCATTCAGAATTCGGTTATACTCAGGTTaGAAAGCGGCTCCTAGGATGCCTGCTGCCACTTGC | + |
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Preference number: 6 (lower is better) Translates to: YSVSFRIRLYSG*KAAPRMPAATC Trigger: GCAAGTGGCAGCAGGCATCCTAGGAGCCGCTTTCAAACCTGAGTATAACCGAATTCTGAATGAAACGCTATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS CAA 90 bp | CCTGATAAGTTGCACAGTCAGTTCCTGTACATTGACATGACTCTTTaGCCTCCACAAAATTATTTCCCCAGTCGGCAGCTCCATTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: PDKLHSQFLYIDMTL*PPQNYFPSRQLHSP Trigger: TGGAGAATGGAGCTGCCGACTGGGGAAATAATTTTGTGGAGGCAAAAGAGTCATGTCAATGTACAGGAACTGACTGTGCAACTTATCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS CAA 72 bp | TTGCACAGTCAGTTCCTGTACATTGACATGACTCTTTaGCCTCCACAAAATTATTTCCCCAGTCGGCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: LHSQFLYIDMTL*PPQNYFPSRQL Trigger: GAGCTGCCGACTGGGGAAATAATTTTGTGGAGGCAAAAGAGTCATGTCAATGTACAGGAACTGACTGTGCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS CAA 90 bp | GCATTTTCATATAGCGTTTCATTCAGAATTCGGTTATACTCAGGTTaGAAAGCGGCTCCTAGGATGCCTGCTGCCACTTGCAGAATCAGA | + |
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Preference number: 6 (lower is better) Translates to: AFSYSVSFRIRLYSG*KAAPRMPAATCRIR Trigger: TCTGATTCTGCAAGTGGCAGCAGGCATCCTAGGAGCCGCTTTCAAACCTGAGTATAACCGAATTCTGAATGAAACGCTATATGAAAATGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS CAA 72 bp | ATCATGGCCTTCTGGAAGTCTTTTGCCTCATCAGTGTaGTCCGACAGAAGCTTAGCATTTTCATATAGCGTT | + |
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Preference number: 6 (lower is better) Translates to: IMAFWKSFASSV*SDRSLAFSYSV Trigger: AACGCTATATGAAAATGCTAAGCTTCTGTCGGACAACACTGATGAGGCAAAAGACTTCCAGAAGGCCATGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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| CDS CCA 72 bp | TTCAAACAGATCTTTGATCAAAGAAAGACAGGTCTTTaGGTAAACGGAACTCCCCTGATAAGTTGCACAGTC | + |
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Preference number: 6 (lower is better) Translates to: FKQIFDQRKTGL*VNGTPLISCTV Trigger: GACTGTGCAACTTATCAGGGGAGTTCCGTTTACCCAAAGACCTGTCTTTCTTTGATCAAAGATCTGTTTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035563.15 ENSMUST00000080630.11 ENSMUST00000179196.3 |
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