Pregenerated sensors for TSPAN6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067377Ensembl transcript IDs: ENSMUST00000087557.12, ENSMUST00000176641.2, ENSMUST00000176718.8
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATTGATGGGCACCATCTGATGACCAGCTGGGATGAAATTATACAATaGAACTCTGCCTACCAGCAGAGGCTAAGGAAATGTTTTCCTTTT | + |
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Preference number: 1 (lower is better) Translates to: IDGHHLMTSWDEIIQ*NSAYQQRLRKCFPF Trigger: AAAAGGAAAACATTTCCTTAGCCTCTGCTGGTAGGCAGAGTTGCATTGTATAATTTCATCCCAGCTGGTCATCAGATGGTGCCCATCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| 3UTR CCA 90 bp | AAATTCATAGGGGTTAAAGTTCCACCAGTGACACTGTTAGGGAAATaGCAAGTTCACAGCACTTCTCACAATTCCTACACTGAGAAATCA | + |
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Preference number: 1 (lower is better) Translates to: KFIGVKVPPVTLLGK*QVHSTSHNSYTEKS Trigger: TGATTTCTCAGTGTAGGAATTGTGAGAAGTGCTGTGAACTTGCCATTTCCCTAACAGTGTCACTGGTGGAACTTTAACCCCTATGAATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| 3UTR TCA 90 bp | GTTAGGGAAATGGCAAGTTCACAGCACTTCTCACAATTCCTACACTaGGAAATCAAATCCAAGGGAAACAGGGTATTATTTCATTTACAA | + |
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Preference number: 1 (lower is better) Translates to: VREMASSQHFSQFLH*EIKSKGNRVLFHLQ Trigger: TTGTAAATGAAATAATACCCTGTTTCCCTTGGATTTGATTTCTCAGTGTAGGAATTGTGAGAAGTGCTGTGAACTTGCCATTTCCCTAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| 3UTR-3UTR TCA 90 bp | GATGGGCACCATCTGATGACCAGCTGGGATGAAATTATACAATGCAACTCTGCCTCACAATTCCTACACTaGGAAATCAAATCCAAGGGA | + |
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Preference number: 2 (lower is better) Translates to: DGHHLMTSWDEIIQCNSASQFLH*EIKSKG Trigger: TCCCTTGGATTTGATTTCTCAGTGTAGGAATTGTGA...GGCAGAGTTGCATTGTATAATTTCATCCCAGCTGGTCATCAGATGGTGCCCATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| 3UTR GCA 72 bp | GTCCTTTGCACCCAAAGCCTGAGACTGGTACCACCATaGAGGAACGCCATTGATGGGCACCATCTGATGACC | + |
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Preference number: 3 (lower is better) Translates to: VLCTQSLRLVPP*RNAIDGHHLMT Trigger: GGTCATCAGATGGTGCCCATCAATGGCGTTCCTGCATGGTGGTACCAGTCTCAGGCTTTGGGTGCAAAGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| 3UTR CCA 72 bp | AGGAACGCCATTGATGGGCACCATCTGATGACCAGCTaGGATGAAATTATACAATGCAACTCTGCCTACCAG | + |
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Preference number: 3 (lower is better) Translates to: RNAIDGHHLMTS*DEIIQCNSAYQ Trigger: CTGGTAGGCAGAGTTGCATTGTATAATTTCATCCCAGCTGGTCATCAGATGGTGCCCATCAATGGCGTTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| 3UTR GCA 72 bp | CACCATCTGATGACCAGCTGGGATGAAATTATACAATaGAACTCTGCCTACCAGCAGAGGCTAAGGAAATGT | + |
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Preference number: 3 (lower is better) Translates to: HHLMTSWDEIIQ*NSAYQQRLRKC Trigger: ACATTTCCTTAGCCTCTGCTGGTAGGCAGAGTTGCATTGTATAATTTCATCCCAGCTGGTCATCAGATGGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| 3UTR TCA 72 bp | ATGGCAAGTTCACAGCACTTCTCACAATTCCTACACTaGGAAATCAAATCCAAGGGAAACAGGGTATTATTT | + |
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Preference number: 3 (lower is better) Translates to: MASSQHFSQFLH*EIKSKGNRVLF Trigger: AAATAATACCCTGTTTCCCTTGGATTTGATTTCTCAGTGTAGGAATTGTGAGAAGTGCTGTGAACTTGCCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| 3UTR CAA 72 bp | CACAGAATACAAGTGGTGGCTCTTAGTCTCTGTCCTTaGCACCCAAAGCCTGAGACTGGTACCACCATGCAG | + |
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Preference number: 4 (lower is better) Translates to: HRIQVVALSLCP*HPKPETGTTMQ Trigger: CTGCATGGTGGTACCAGTCTCAGGCTTTGGGTGCAAAGGACAGAGACTAAGAGCCACCACTTGTATTCTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| CDS-3UTR TCA 90 bp | AGGAACGCCATTGATGGGCACCATCTGATGACCAGCTGGGATGAAATTATACAACAGTGCCTGTGCCAATaGGCACAAAAGGCACATTGG | + |
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Preference number: 4 (lower is better) Translates to: RNAIDGHHLMTSWDEIIQQCLCQ*AQKAHW Trigger: CCAATGTGCCTTTTGTGCTCATTGGCACAGGCACTG...TTGTATAATTTCATCCCAGCTGGTCATCAGATGGTGCCCATCAATGGCGTTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| CDS-3UTR TCA 90 bp | CCACCATGCAGGAACGCCATTGATGGGCACCATCTGATGACCAGCTGGGATGAAAACGACTCCCATTTCTaGCTCTATAGTTGTCATTAC | + |
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Preference number: 4 (lower is better) Translates to: PPCRNAIDGHHLMTSWDENDSHF*LYSCHY Trigger: GTAATGACAACTATAGAGTCAGAAATGGGAGTCGTT...TTCATCCCAGCTGGTCATCAGATGGTGCCCATCAATGGCGTTCCTGCATGGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| CDS-3UTR CCA 90 bp | AGGAACGCCATTGATGGGCACCATCTGATGACCAGCTGGGATGAAATTATACAATTCTATAGTCTCCTGTaGAGTTGTACTCCTTCAGAG | + |
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Preference number: 4 (lower is better) Translates to: RNAIDGHHLMTSWDEIIQFYSLL*SCTPSE Trigger: CTCTGAAGGAGTACAACTCCACAGGAGACTATAGAA...TTGTATAATTTCATCCCAGCTGGTCATCAGATGGTGCCCATCAATGGCGTTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| CDS-3UTR TCA 90 bp | GATGGGCACCATCTGATGACCAGCTGGGATGAAATTATACAATGCAACTCTGCCAAGATTCCAATTAGCTaGAAGCAAGCAACTCCAAAA | + |
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Preference number: 4 (lower is better) Translates to: DGHHLMTSWDEIIQCNSAKIPIS*KQATPK Trigger: TTTTGGAGTTGCTTGCTTTCAGCTAATTGGAATCTT...GGCAGAGTTGCATTGTATAATTTCATCCCAGCTGGTCATCAGATGGTGCCCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| CDS-3UTR GCA 90 bp | ACAGAAAGTGGACACAGAATACAATACACAAGTATCTTGATTGAATCAGCCTACTTTCCAGGCTCACCTTaGCCCAAATGCCAACGGCAA | + |
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Preference number: 4 (lower is better) Translates to: TESGHRIQYTSILIESAYFPGSP*PKCQRQ Trigger: TTGCCGTTGGCATTTGGGGCAAGGTGAGCCTGGAAA...GTAGGCTGATTCAATCAAGATACTTGTGTATTGTATTCTGTGTCCACTTTCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| CDS-3UTR TCA 90 bp | GAAAGTGGACACAGAATACAATACACAAGTATCTTGATTGAATCAGCCTACTGGAATCTCCGTAATTGGTaGCACCGCAACAATGCAACG | + |
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Preference number: 4 (lower is better) Translates to: ESGHRIQYTSILIESAYWNLRNW*HRNNAT Trigger: CGTTGCATTGTTGCGGTGTCACCAATTACGGAGATT...CCAGTAGGCTGATTCAATCAAGATACTTGTGTATTGTATTCTGTGTCCACTTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| CDS-3UTR TCA 90 bp | AGTGACACTGTTAGGGAAATGGCAAGTTCACAGCACTTCTCACAATTCCTACACGGGAAATCCTGTTTCTaGGTAATAGTTCGTACCTTT | + |
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Preference number: 4 (lower is better) Translates to: SDTVREMASSQHFSQFLHGKSCF*VIVRTF Trigger: AAAGGTACGAACTATTACTCAGAAACAGGATTTCCC...GTGTAGGAATTGTGAGAAGTGCTGTGAACTTGCCATTTCCCTAACAGTGTCACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| CDS-3UTR CCA 90 bp | ACCAATTTTCTATCACACTACATCAACGACAAATTCATAGGGGTTAAAGTTCCAATCTGCATCTCTCTGTaGATAACAGCCCTCCAGTTT | + |
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Preference number: 4 (lower is better) Translates to: TNFLSHYINDKFIGVKVPICISL*ITALQF Trigger: AAACTGGAGGGCTGTTATCCACAGAGAGATGCAGAT...TGGAACTTTAACCCCTATGAATTTGTCGTTGATGTAGTGTGATAGAAAATTGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| CDS-3UTR CCA 90 bp | ATTTACAATTTACTAGCACTTCCAGTGTTTCAGAGATACAGGGGTGTAAGAATAGCACAAAAGGCACATTaGTGGCCTTCTCATTTAAGA | + |
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Preference number: 4 (lower is better) Translates to: IYNLLALPVFQRYRGVRIAQKAH*WPSHLR Trigger: TCTTAAATGAGAAGGCCACCAATGTGCCTTTTGTGC...TATTCTTACACCCCTGTATCTCTGAAACACTGGAAGTGCTAGTAAATTGTAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| CDS-3UTR CCA 90 bp | ATCTTGACTAGTACAAGGCCCACTCAAGGAGACCAATTTTCTATCACACTACATTATACTATCTCATACTaGTTATTCGTTATGGCACGA | + |
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Preference number: 4 (lower is better) Translates to: ILTSTRPTQGDQFSITLHYTISY*LFVMAR Trigger: TCGTGCCATAACGAATAACCAGTATGAGATAGTATA...ATGTAGTGTGATAGAAAATTGGTCTCCTTGAGTGGGCCTTGTACTAGTCAAGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| CDS-3UTR CAA 90 bp | AGTACAAGGCCCACTCAAGGAGACCAATTTTCTATCACACTACATCAACGACAATTTTCCAGGCTCACCTaGCCCCAAATGCCAACGGCA | + |
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Preference number: 5 (lower is better) Translates to: STRPTQGDQFSITLHQRQFSRLT*PQMPTA Trigger: TGCCGTTGGCATTTGGGGCAAGGTGAGCCTGGAAAA...TTGTCGTTGATGTAGTGTGATAGAAAATTGGTCTCCTTGAGTGGGCCTTGTACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| CDS CCA 90 bp | CTGCATCTCTCTGTGGATAACAGCCCTCCAGTTTACAGCAGCTCTTaGGAAATCCTGTTTCTGAGTAATAGTTCGTACCTTTCCAATCTC | + |
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Preference number: 5 (lower is better) Translates to: LHLSVDNSPPVYSSS*EILFLSNSSYLSNL Trigger: GAGATTGGAAAGGTACGAACTATTACTCAGAAACAGGATTTCCCAAGAGCTGCTGTAAACTGGAGGGCTGTTATCCACAGAGAGATGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087557.12 ENSMUST00000176641.2 |
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| CDS TCA 90 bp | ATAACAGCCCTCCAGTTTACAGCAGCTCTTGGGAAATCCTGTTTCTaGGTAATAGTTCGTACCTTTCCAATCTCCGTAATTGGTGACACC | + |
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Preference number: 5 (lower is better) Translates to: ITALQFTAALGKSCF*VIVRTFPISVIGDT Trigger: GGTGTCACCAATTACGGAGATTGGAAAGGTACGAACTATTACTCAGAAACAGGATTTCCCAAGAGCTGCTGTAAACTGGAGGGCTGTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087557.12 ENSMUST00000176641.2 |
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| CDS-3UTR CAA 90 bp | AGTACAAGGCCCACTCAAGGAGACCAATTTTCTATCACACTACATCAACGACAAAGTTTACAGCAGCTCTaGGGAAATCCTGTTTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: STRPTQGDQFSITLHQRQSLQQL*GNPVSE Trigger: CTCAGAAACAGGATTTCCCAAGAGCTGCTGTAAACT...TTGTCGTTGATGTAGTGTGATAGAAAATTGGTCTCCTTGAGTGGGCCTTGTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| CDS TCA 90 bp | CTGTTTCTGAGTAATAGTTCGTACCTTTCCAATCTCCGTAATTGGTaGCACCGCAACAATGCAACGTACTTTGGATCTTGTCTACAGCTT | + |
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Preference number: 5 (lower is better) Translates to: LFLSNSSYLSNLRNW*HRNNATYFGSCLQL Trigger: AAGCTGTAGACAAGATCCAAAGTACGTTGCATTGTTGCGGTGTCACCAATTACGGAGATTGGAAAGGTACGAACTATTACTCAGAAACAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087557.12 ENSMUST00000176641.2 |
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| CDS GCA 90 bp | AGTTGTCATTACCTTTATGAAACAACCCTCTTCGTTGACTTTATCTaGATCTCTCTGTGGATAACAGCCCTCCAGTTTACAGCAGCTCTT | + |
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Preference number: 5 (lower is better) Translates to: SCHYLYETTLFVDFI*ISLWITALQFTAAL Trigger: AAGAGCTGCTGTAAACTGGAGGGCTGTTATCCACAGAGAGATGCAGATAAAGTCAACGAAGAGGGTTGTTTCATAAAGGTAATGACAACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087557.12 ENSMUST00000176641.2 |
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| CDS-3UTR CAA 90 bp | ATCTTGACTAGTACAAGGCCCACTCAAGGAGACCAATTTTCTATCACACTACATAGCACAAAAGGCACATaGGTGGCCTTCTCATTTAAG | + |
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Preference number: 5 (lower is better) Translates to: ILTSTRPTQGDQFSITLHSTKGT*VAFSFK Trigger: CTTAAATGAGAAGGCCACCAATGTGCCTTTTGTGCT...ATGTAGTGTGATAGAAAATTGGTCTCCTTGAGTGGGCCTTGTACTAGTCAAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| CDS TCA 90 bp | AAAGCAAGCAACTCCAAAAGAAATTCCAGCAACGACTCCCATTTCTaGCTCTATAGTTGTCATTACCTTTATGAAACAACCCTCTTCGTT | + |
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Preference number: 5 (lower is better) Translates to: KASNSKRNSSNDSHF*LYSCHYLYETTLFV Trigger: AACGAAGAGGGTTGTTTCATAAAGGTAATGACAACTATAGAGTCAGAAATGGGAGTCGTTGCTGGAATTTCTTTTGGAGTTGCTTGCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087557.12 |
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| CDS TCA 90 bp | AAAGCAAGCAACTCCAAAAGAAATTCCAGCAACGACTCCCATTTCTaGCTCTATAGTTGTCATTACCTTTATGAAACAACCCGTACTTTG | + |
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Preference number: 5 (lower is better) Translates to: KASNSKRNSSNDSHF*LYSCHYLYETTRTL Trigger: CAAAGTACGGGTTGTTTCATAAAGGTAATGACAACTATAGAGTCAGAAATGGGAGTCGTTGCTGGAATTTCTTTTGGAGTTGCTTGCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176718.8 |
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| CDS TCA 72 bp | AGTAATAGTTCGTACCTTTCCAATCTCCGTAATTGGTaGCACCGCAACAATGCAACGTACTTTGGATCTTGT | + |
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Preference number: 6 (lower is better) Translates to: SNSSYLSNLRNW*HRNNATYFGSC Trigger: ACAAGATCCAAAGTACGTTGCATTGTTGCGGTGTCACCAATTACGGAGATTGGAAAGGTACGAACTATTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087557.12 ENSMUST00000176641.2 |
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| CDS GCA 72 bp | TACCTTTATGAAACAACCCTCTTCGTTGACTTTATCTaGATCTCTCTGTGGATAACAGCCCTCCAGTTTACA | + |
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Preference number: 6 (lower is better) Translates to: YLYETTLFVDFI*ISLWITALQFT Trigger: TGTAAACTGGAGGGCTGTTATCCACAGAGAGATGCAGATAAAGTCAACGAAGAGGGTTGTTTCATAAAGGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087557.12 ENSMUST00000176641.2 |
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| CDS CAA 72 bp | TATAGTTGTCATTACCTTTATGAAACAACCCGTACTTaGGATCTTGTCTACAGCTTCACTTCTATAGTCTCC | + |
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Preference number: 6 (lower is better) Translates to: YSCHYLYETTRT*DLVYSFTSIVS Trigger: GGAGACTATAGAAGTGAAGCTGTAGACAAGATCCAAAGTACGGGTTGTTTCATAAAGGTAATGACAACTATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176718.8 |
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