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Pregenerated sensors for TSPAN31 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006736

Ensembl transcript IDs: ENSMUST00000060991.6

Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACAAGTTCCCTGCAAGGACCTAGGCAGGCAGTCCAGCTCTTTGGCTaGCAAGATCAGAGAGAAATGCTTTCTTTGAATATTCGGTCAAAA +
Preference number: 1 (lower is better)
Translates to: TSSLQGPRQAVQLFG*QDQREMLSLNIRSK
Trigger: TTTTGACCGAATATTCAAAGAAAGCATTTCTCTCTGATCTTGCCAGCCAAAGAGCTGGACTGCCTGCCTAGGTCCTTGCAGGGAACTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
3UTR-3UTR TCA 90 bp CTAGGTGTTTGTAAAGATGGCAAGGCCAGGCAGTGGTGGTGTACGCCTTTAATCATGCCAGCAGGAGGCTaGGGCAGGAGGGTCTGGAAT +
Preference number: 2 (lower is better)
Translates to: LGVCKDGKARQWWCTPLIMPAGG*GRRVWN
Trigger: ATTCCAGACCCTCCTGCCTCAGCCTCCTGCTGGCAT...GATTAAAGGCGTACACCACCACTGCCTGGCCTTGCCATCTTTACAAACACCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
3UTR-3UTR GCA 90 bp CCCCTAGGTGTTTGTAAAGATGGCAAGGCCAGGCAGTGGTGGTGTACGCCTTTACCTAGGCTGCAGAGATaGTATCTGGGAGGTCAAAAG +
Preference number: 2 (lower is better)
Translates to: PLGVCKDGKARQWWCTPLPRLQR*YLGGQK
Trigger: CTTTTGACCTCCCAGATAGCATCTCTGCAGCCTAGG...TAAAGGCGTACACCACCACTGCCTGGCCTTGCCATCTTTACAAACACCTAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
3UTR-3UTR TCA 90 bp GCTTTCTTTGAATATTCGGTCAAAATGGCTTTAGTTTCTAAGTTCACTGGTCCTGCTGGGAATGACAACTaGTTGGTAGAAATGCTTGCC +
Preference number: 2 (lower is better)
Translates to: AFFEYSVKMALVSKFTGPAGNDN*LVEMLA
Trigger: GGCAAGCATTTCTACCAATCAGTTGTCATTCCCAGC...AGGACCAGTGAACTTAGAAACTAAAGCCATTTTGACCGAATATTCAAAGAAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
3UTR CCA 72 bp CTAGGTGTTTGTAAAGATGGCAAGGCCAGGCAGTGGTaGTGTACGCCTTTAATCCCAGCACTTGGGAGGCAG +
Preference number: 3 (lower is better)
Translates to: LGVCKDGKARQW*CTPLIPALGRQ
Trigger: CTGCCTCCCAAGTGCTGGGATTAAAGGCGTACACCACCACTGCCTGGCCTTGCCATCTTTACAAACACCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
3UTR CCA 72 bp TGCTTGCCGAGCACTTGTGAGGCCCTGGGTTATAACTaGTTTTCTCTTGGTGTTCTGACTCTGTCCTTGAAG +
Preference number: 3 (lower is better)
Translates to: CLPSTCEALGYN*FSLGVLTLSLK
Trigger: CTTCAAGGACAGAGTCAGAACACCAAGAGAAAACCAGTTATAACCCAGGGCCTCACAAGTGCTCGGCAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
3UTR CCA 72 bp CTGCAAGGACCTAGGCAGGCAGTCCAGCTCTTTGGCTaGCAAGATCAGAGAGAAATGCTTTCTTTGAATATT +
Preference number: 3 (lower is better)
Translates to: LQGPRQAVQLFG*QDQREMLSLNI
Trigger: AATATTCAAAGAAAGCATTTCTCTCTGATCTTGCCAGCCAAAGAGCTGGACTGCCTGCCTAGGTCCTTGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
3UTR-3UTR CAA 90 bp GAGGCCCTGGGTTATAACTGGTTTTCTCTTGGTGTTCTGACTCTGTCCTTGAAGAATTCAAGGTCTTCCTaGGATACAGAGCTAGCTAGA +
Preference number: 3 (lower is better)
Translates to: EALGYNWFSLGVLTLSLKNSRSS*DTELAR
Trigger: TCTAGCTAGCTCTGTATCCAAGGAAGACCTTGAATT...CTTCAAGGACAGAGTCAGAACACCAAGAGAAAACCAGTTATAACCCAGGGCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS-3UTR TCA 90 bp CCCCTAGGTGTTTGTAAAGATGGCAAGGCCAGGCAGTGGTGGTGTACGCCTTTAAAGAAGAGCAGCACTTaGTGGTGGTTCGCGGCGCCC +
Preference number: 4 (lower is better)
Translates to: PLGVCKDGKARQWWCTPLKKSST*WWFAAP
Trigger: GGGCGCCGCGAACCACCATCAAGTGCTGCTCTTCTT...TAAAGGCGTACACCACCACTGCCTGGCCTTGCCATCTTTACAAACACCTAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS-3UTR GCA 90 bp GAGGCCCTGGGTTATAACTGGTTTTCTCTTGGTGTTCTGACTCTGTCCTTGAAGCCACACCGAGGCCCTTaGCCCAGGCAGCCACGCCAA +
Preference number: 4 (lower is better)
Translates to: EALGYNWFSLGVLTLSLKPHRGP*PRQPRQ
Trigger: TTGGCGTGGCTGCCTGGGGCAAGGGCCTCGGTGTGG...CTTCAAGGACAGAGTCAGAACACCAAGAGAAAACCAGTTATAACCCAGGGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS-3UTR CCA 90 bp GGTGTTTGTAAAGATGGCAAGGCCAGGCAGTGGTGGTGTACGCCTTTAATCCCAGGAAGGCACTGGGGTTaGCTCGAGGGTCCTTTTGAT +
Preference number: 4 (lower is better)
Translates to: GVCKDGKARQWWCTPLIPGRHWG*LEGPFD
Trigger: ATCAAAAGGACCCTCGAGCCAACCCCAGTGCCTTCC...TGGGATTAAAGGCGTACACCACCACTGCCTGGCCTTGCCATCTTTACAAACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS-3UTR TCA 90 bp CTACCTCCCCTCATCCATAATCGTGTTCCCATCAAAACAGACATAAGTCCAACCGTCCTGCCACCGCGATaGGGAGAAGGAAGACTCCCA +
Preference number: 4 (lower is better)
Translates to: LPPLIHNRVPIKTDISPTVLPPR*GEGRLP
Trigger: TGGGAGTCTTCCTTCTCCTCATCGCGGTGGCAGGAC...GGTTGGACTTATGTCTGTTTTGATGGGAACACGATTATGGATGAGGGGAGGTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS-3UTR TCA 90 bp AGGGTCTGGAATTCAAGGTCTTCCTTGGATACAGAGCTAGCTAGAAACAGCCTAAGGCAGCCACGCCAATaGGCAAAAAGCCCACAAGCA +
Preference number: 4 (lower is better)
Translates to: RVWNSRSSLDTELARNSLRQPRQ*AKSPQA
Trigger: TGCTTGTGGGCTTTTTGCTCATTGGCGTGGCTGCCT...TAGGCTGTTTCTAGCTAGCTCTGTATCCAAGGAAGACCTTGAATTCCAGACCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS-3UTR TCA 90 bp CTAGGTGTTTGTAAAGATGGCAAGGCCAGGCAGTGGTGGTGTACGCCTTTAATCGCTCGAGGGTCCTTTTaGTTCCGGAATCTCATTGCT +
Preference number: 4 (lower is better)
Translates to: LGVCKDGKARQWWCTPLIARGSF*FRNLIA
Trigger: AGCAATGAGATTCCGGAATCAAAAGGACCCTCGAGC...GATTAAAGGCGTACACCACCACTGCCTGGCCTTGCCATCTTTACAAACACCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS-3UTR TCA 90 bp CTACCTCCCCTCATCCATAATCGTGTTCCCATCAAAACAGACATAAGTCCAACCGTTAATAGCCAGACATaGGCAAGAGATTCCAAACTG +
Preference number: 4 (lower is better)
Translates to: LPPLIHNRVPIKTDISPTVNSQT*ARDSKL
Trigger: CAGTTTGGAATCTCTTGCTCATGTCTGGCTATTAAC...GGTTGGACTTATGTCTGTTTTGATGGGAACACGATTATGGATGAGGGGAGGTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS GCA 90 bp AAAGAAGAGCAGCACTTGATGGTGGTTCGCGGCGCCCACCAGTCCTaGCACCGCGATGAGGAGAAGGAAGACTCCCACAGCAATGACTCC +
Preference number: 5 (lower is better)
Translates to: KEEQHLMVVRGAHQS*HRDEEKEDSHSNDS
Trigger: GGAGTCATTGCTGTGGGAGTCTTCCTTCTCCTCATCGCGGTGGCAGGACTGGTGGGCGCCGCGAACCACCATCAAGTGCTGCTCTTCTTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS TCA 90 bp ATGAGGAGAAGGAAGACTCCCACAGCAATGACTCCTCCAATGATGTaGATGCTAGACACCACACCGAGGCCCTTGCCCCAGGCAGCCACG +
Preference number: 5 (lower is better)
Translates to: MRRRKTPTAMTPPMM*MLDTTPRPLPQAAT
Trigger: CGTGGCTGCCTGGGGCAAGGGCCTCGGTGTGGTGTCTAGCATTCACATCATTGGAGGAGTCATTGCTGTGGGAGTCTTCCTTCTCCTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS-3UTR CAA 90 bp CAGCTCTTTGGCTGGCAAGATCAGAGAGAAATGCTTTCTTTGAATATTCGGTCAACCACACCGAGGCCCTaGCCCCAGGCAGCCACGCCA +
Preference number: 5 (lower is better)
Translates to: QLFGWQDQREMLSLNIRSTTPRP*PQAATP
Trigger: TGGCGTGGCTGCCTGGGGCAAGGGCCTCGGTGTGGT...TGACCGAATATTCAAAGAAAGCATTTCTCTCTGATCTTGCCAGCCAAAGAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS-3UTR CAA 90 bp GAGGCCCTGGGTTATAACTGGTTTTCTCTTGGTGTTCTGACTCTGTCCTTGAAGAAAGAAGAGCAGCACTaGATGGTGGTTCGCGGCGCC +
Preference number: 5 (lower is better)
Translates to: EALGYNWFSLGVLTLSLKKEEQH*MVVRGA
Trigger: GGCGCCGCGAACCACCATCAAGTGCTGCTCTTCTTT...CTTCAAGGACAGAGTCAGAACACCAAGAGAAAACCAGTTATAACCCAGGGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS-3UTR CAA 90 bp ATTTCTGAGTTTGAGGCCAGCCTAGTTTACACAGTTCCAGGACAGCCAGGGCCAACACCTCCTAGGATCTaGAGGGCTTTGTCTGAATGT +
Preference number: 5 (lower is better)
Translates to: ISEFEASLVYTVPGQPGPTPPRI*RALSEC
Trigger: ACATTCAGACAAAGCCCTCAAGATCCTAGGAGGTGT...TGGCCCTGGCTGTCCTGGAACTGTGTAAACTAGGCTGGCCTCAAACTCAGAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS-3UTR CAA 90 bp GGTGTTTGTAAAGATGGCAAGGCCAGGCAGTGGTGGTGTACGCCTTTAATCCCAGATTCCGGAATCTCATaGCTAGCCAAACACCAAGGA +
Preference number: 5 (lower is better)
Translates to: GVCKDGKARQWWCTPLIPDSGIS*LAKHQG
Trigger: TCCTTGGTGTTTGGCTAGCAATGAGATTCCGGAATC...TGGGATTAAAGGCGTACACCACCACTGCCTGGCCTTGCCATCTTTACAAACACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS GCA 90 bp GTAAGGTTGAACAAGCCACAGCAGTCAAAACTTCTCTCCAGTTCATaGCGGGTACTGTTGCTCAAGACCGACCACGAAGCATTGATGACA +
Preference number: 5 (lower is better)
Translates to: VRLNKPQQSKLLSSS*RVLLLKTDHEALMT
Trigger: TGTCATCAATGCTTCGTGGTCGGTCTTGAGCAACAGTACCCGGCATGAACTGGAGAGAAGTTTTGACTGCTGTGGCTTGTTCAACCTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS CCA 90 bp TTGAGGGCTTTGTCTGAATGTTTAAGGAACCTCTCCCCACACATCTaGCATGTAGAGCTCTTAGTTTTGCACACCGCACTACAGGAAGTA +
Preference number: 5 (lower is better)
Translates to: LRALSECLRNLSPHI*HVELLVLHTALQEV
Trigger: TACTTCCTGTAGTGCGGTGTGCAAAACTAAGAGCTCTACATGCCAGATGTGTGGGGAGAGGTTCCTTAAACATTCAGACAAAGCCCTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS-3UTR CAA 90 bp CAGCTCTTTGGCTGGCAAGATCAGAGAGAAATGCTTTCTTTGAATATTCGGTCAACCGACCACGAAGCATaGATGACATCTGCCTGTGTG +
Preference number: 5 (lower is better)
Translates to: QLFGWQDQREMLSLNIRSTDHEA*MTSACV
Trigger: CACACAGGCAGATGTCATCAATGCTTCGTGGTCGGT...TGACCGAATATTCAAAGAAAGCATTTCTCTCTGATCTTGCCAGCCAAAGAGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS-3UTR CAA 90 bp GCTTTCTTTGAATATTCGGTCAAAATGGCTTTAGTTTCTAAGTTCACTGGTCCTGGCTCGAGGGTCCTTTaGATTCCGGAATCTCATTGC +
Preference number: 5 (lower is better)
Translates to: AFFEYSVKMALVSKFTGPGSRVL*IPESHC
Trigger: GCAATGAGATTCCGGAATCAAAAGGACCCTCGAGCC...AGGACCAGTGAACTTAGAAACTAAAGCCATTTTGACCGAATATTCAAAGAAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS GCA 72 bp CAGCACTTGATGGTGGTTCGCGGCGCCCACCAGTCCTaGCACCGCGATGAGGAGAAGGAAGACTCCCACAGC +
Preference number: 6 (lower is better)
Translates to: QHLMVVRGAHQS*HRDEEKEDSHS
Trigger: GCTGTGGGAGTCTTCCTTCTCCTCATCGCGGTGGCAGGACTGGTGGGCGCCGCGAACCACCATCAAGTGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS TCA 72 bp AGGAAGACTCCCACAGCAATGACTCCTCCAATGATGTaGATGCTAGACACCACACCGAGGCCCTTGCCCCAG +
Preference number: 6 (lower is better)
Translates to: RKTPTAMTPPMM*MLDTTPRPLPQ
Trigger: CTGGGGCAAGGGCCTCGGTGTGGTGTCTAGCATTCACATCATTGGAGGAGTCATTGCTGTGGGAGTCTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS CAA 90 bp AAGCCACAGCAGTCAAAACTTCTCTCCAGTTCATGCCGGGTACTGTaGCTCAAGACCGACCACGAAGCATTGATGACATCTGCCTGTGTG +
Preference number: 6 (lower is better)
Translates to: KPQQSKLLSSSCRVL*LKTDHEALMTSACV
Trigger: CACACAGGCAGATGTCATCAATGCTTCGTGGTCGGTCTTGAGCAACAGTACCCGGCATGAACTGGAGAGAAGTTTTGACTGCTGTGGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS GCA 72 bp AACAAGCCACAGCAGTCAAAACTTCTCTCCAGTTCATaGCGGGTACTGTTGCTCAAGACCGACCACGAAGCA +
Preference number: 6 (lower is better)
Translates to: NKPQQSKLLSSS*RVLLLKTDHEA
Trigger: TGCTTCGTGGTCGGTCTTGAGCAACAGTACCCGGCATGAACTGGAGAGAAGTTTTGACTGCTGTGGCTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS CAA 90 bp ACCGCACTACAGGAAGTATCATCTTGTAGGCGCAGGGTTGTAAGGTaGAACAAGCCACAGCAGTCAAAACTTCTCTCCAGTTCATGCCGG +
Preference number: 6 (lower is better)
Translates to: TALQEVSSCRRRVVR*NKPQQSKLLSSSCR
Trigger: CCGGCATGAACTGGAGAGAAGTTTTGACTGCTGTGGCTTGTTCAACCTTACAACCCTGCGCCTACAAGATGATACTTCCTGTAGTGCGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS CAA 90 bp TTAAGGAACCTCTCCCCACACATCTGGCATGTAGAGCTCTTAGTTTaGCACACCGCACTACAGGAAGTATCATCTTGTAGGCGCAGGGTT +
Preference number: 6 (lower is better)
Translates to: LRNLSPHIWHVELLV*HTALQEVSSCRRRV
Trigger: AACCCTGCGCCTACAAGATGATACTTCCTGTAGTGCGGTGTGCAAAACTAAGAGCTCTACATGCCAGATGTGTGGGGAGAGGTTCCTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS CAA 72 bp CAGTCAAAACTTCTCTCCAGTTCATGCCGGGTACTGTaGCTCAAGACCGACCACGAAGCATTGATGACATCT +
Preference number: 6 (lower is better)
Translates to: QSKLLSSSCRVL*LKTDHEALMTS
Trigger: AGATGTCATCAATGCTTCGTGGTCGGTCTTGAGCAACAGTACCCGGCATGAACTGGAGAGAAGTTTTGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS CAA 72 bp CTCTCCCCACACATCTGGCATGTAGAGCTCTTAGTTTaGCACACCGCACTACAGGAAGTATCATCTTGTAGG +
Preference number: 6 (lower is better)
Translates to: LSPHIWHVELLV*HTALQEVSSCR
Trigger: CCTACAAGATGATACTTCCTGTAGTGCGGTGTGCAAAACTAAGAGCTCTACATGCCAGATGTGTGGGGAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS CAA 90 bp GTGAAACTAAAGAAGAGCCCAACACCTCCTAGGATCTTGAGGGCTTaGTCTGAATGTTTAAGGAACCTCTCCCCACACATCTGGCATGTA +
Preference number: 6 (lower is better)
Translates to: VKLKKSPTPPRILRA*SECLRNLSPHIWHV
Trigger: TACATGCCAGATGTGTGGGGAGAGGTTCCTTAAACATTCAGACAAAGCCCTCAAGATCCTAGGAGGTGTTGGGCTCTTCTTTAGTTTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS CAA 90 bp AGGATCTCTGTGAAACTAAAGAAGAGCCCAACACCTCCTAGGATCTaGAGGGCTTTGTCTGAATGTTTAAGGAACCTCTCCCCACACATC +
Preference number: 6 (lower is better)
Translates to: RISVKLKKSPTPPRI*RALSECLRNLSPHI
Trigger: GATGTGTGGGGAGAGGTTCCTTAAACATTCAGACAAAGCCCTCAAGATCCTAGGAGGTGTTGGGCTCTTCTTTAGTTTCACAGAGATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS CAA 72 bp CAGGAAGTATCATCTTGTAGGCGCAGGGTTGTAAGGTaGAACAAGCCACAGCAGTCAAAACTTCTCTCCAGT +
Preference number: 6 (lower is better)
Translates to: QEVSSCRRRVVR*NKPQQSKLLSS
Trigger: ACTGGAGAGAAGTTTTGACTGCTGTGGCTTGTTCAACCTTACAACCCTGCGCCTACAAGATGATACTTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS CAA 72 bp GTGAAACTAAAGAAGAGCCCAACACCTCCTAGGATCTaGAGGGCTTTGTCTGAATGTTTAAGGAACCTCTCC +
Preference number: 6 (lower is better)
Translates to: VKLKKSPTPPRI*RALSECLRNLS
Trigger: GGAGAGGTTCCTTAAACATTCAGACAAAGCCCTCAAGATCCTAGGAGGTGTTGGGCTCTTCTTTAGTTTCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6
CDS TCA 72 bp GACATCTGCCTGTGTGTTTCTGTTAATAGCCAGACATaGGCAAGAGATTCCAAACTGGAAGATGAAGACCAA +
Preference number: 6 (lower is better)
Translates to: DICLCVSVNSQT*ARDSKLEDEDQ
Trigger: TTGGTCTTCATCTTCCAGTTTGGAATCTCTTGCTCATGTCTGGCTATTAACAGAAACACACAGGCAGATGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060991.6