Pregenerated sensors for TSPAN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032324Ensembl transcript IDs: ENSMUST00000034876.10, ENSMUST00000215906.2, ENSMUST00000216320.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAGGGCCCAGTGATACCACAACACAGTCCATTACTCCTCAGAGGTaGCAGAAGCAGGCCACACCCTCCTATAGCTCTACCACATTACAG | + |
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Preference number: 1 (lower is better) Translates to: KGPSDTTTQSITPQR*QKQATPSYSSTTLQ Trigger: CTGTAATGTGGTAGAGCTATAGGAGGGTGTGGCCTGCTTCTGTCACCTCTGAGGAGTAATGGACTGTGTTGTGGTATCACTGGGCCCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| 3UTR TCA 90 bp | AACCTTTGGCCAAGAGTTCTCGTTATGAAGACGAAAAGGGCCCAGTaGTACCACAACACAGTCCATTACTCCTCAGAGGTGACAGAAGCA | + |
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Preference number: 1 (lower is better) Translates to: NLWPRVLVMKTKRAQ*YHNTVHYSSEVTEA Trigger: TGCTTCTGTCACCTCTGAGGAGTAATGGACTGTGTTGTGGTATCACTGGGCCCTTTTCGTCTTCATAACGAGAACTCTTGGCCAAAGGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| 3UTR TCA 90 bp | GTCCTCCCTCTTTACCCTCAAACCTTTGGCCAAGAGTTCTCGTTATaGAGACGAAAAGGGCCCAGTGATACCACAACACAGTCCATTACT | + |
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Preference number: 1 (lower is better) Translates to: VLPLYPQTFGQEFSL*RRKGPSDTTTQSIT Trigger: AGTAATGGACTGTGTTGTGGTATCACTGGGCCCTTTTCGTCTTCATAACGAGAACTCTTGGCCAAAGGTTTGAGGGTAAAGAGGGAGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| 3UTR-3UTR TCA 90 bp | ATATTCTTTAAAAGGACACTGGTGTGCGGCACCAGACAGCTGGCGTCCTCCCTCATTACTCCTCAGAGGTaGCAGAAGCAGGCCACACCC | + |
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Preference number: 2 (lower is better) Translates to: IFFKRTLVCGTRQLASSLITPQR*QKQATP Trigger: GGGTGTGGCCTGCTTCTGTCACCTCTGAGGAGTAAT...GAGGGAGGACGCCAGCTGTCTGGTGCCGCACACCAGTGTCCTTTTAAAGAATAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| 3UTR-3UTR CCA 90 bp | CTCTTTACCCTCAAACCTTTGGCCAAGAGTTCTCGTTATGAAGACGAAAAGGGCGGGCAGGTAGGAAGGTaGGTACATGAAATGCCAACC | + |
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Preference number: 2 (lower is better) Translates to: LFTLKPLAKSSRYEDEKGGQVGR*VHEMPT Trigger: GGTTGGCATTTCATGTACCCACCTTCCTACCTGCCC...GCCCTTTTCGTCTTCATAACGAGAACTCTTGGCCAAAGGTTTGAGGGTAAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| 3UTR-3UTR TCA 90 bp | AGTCCATTACTCCTCAGAGGTGACAGAAGCAGGCCACACCCTCCTATAGCTCTAGCTCAATTCACCTTCTaGATCAGAACAAGGATACTA | + |
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Preference number: 2 (lower is better) Translates to: SPLLLRGDRSRPHPPIALAQFTF*IRTRIL Trigger: TAGTATCCTTGTTCTGATTCAGAAGGTGAATTGAGC...TAGAGCTATAGGAGGGTGTGGCCTGCTTCTGTCACCTCTGAGGAGTAATGGACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| 3UTR TCA 72 bp | GCCAACCTGCTAGTCAACACCAGTGTACGTGTGCTTTaGCTAGATGAACTCAGGAGCCAACTGCTGCAGGCC | + |
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Preference number: 3 (lower is better) Translates to: ANLLVNTSVRVL*LDELRSQLLQA Trigger: GGCCTGCAGCAGTTGGCTCCTGAGTTCATCTAGTCAAAGCACACGTACACTGGTGTTGACTAGCAGGTTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| 3UTR CCA 72 bp | TCTTTAAAAGGACACTGGTGTGCGGCACCAGACAGCTaGCGTCCTCCCTCTTTACCCTCAAACCTTTGGCCA | + |
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Preference number: 3 (lower is better) Translates to: SLKGHWCAAPDS*RPPSLPSNLWP Trigger: TGGCCAAAGGTTTGAGGGTAAAGAGGGAGGACGCCAGCTGTCTGGTGCCGCACACCAGTGTCCTTTTAAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| 3UTR TCA 72 bp | GCTAGTCAACACCAGTGTACGTGTGCTTTGACTAGATaGACTCAGGAGCCAACTGCTGCAGGCCTGCTCAAT | + |
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Preference number: 3 (lower is better) Translates to: ASQHQCTCALTR*TQEPTAAGLLN Trigger: ATTGAGCAGGCCTGCAGCAGTTGGCTCCTGAGTTCATCTAGTCAAAGCACACGTACACTGGTGTTGACTAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| 3UTR TCA 72 bp | AGTGATACCACAACACAGTCCATTACTCCTCAGAGGTaGCAGAAGCAGGCCACACCCTCCTATAGCTCTACC | + |
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Preference number: 3 (lower is better) Translates to: SDTTTQSITPQR*QKQATPSYSST Trigger: GGTAGAGCTATAGGAGGGTGTGGCCTGCTTCTGTCACCTCTGAGGAGTAATGGACTGTGTTGTGGTATCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| 3UTR TCA 72 bp | CTTTACCCTCAAACCTTTGGCCAAGAGTTCTCGTTATaGAGACGAAAAGGGCCCAGTGATACCACAACACAG | + |
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Preference number: 3 (lower is better) Translates to: LYPQTFGQEFSL*RRKGPSDTTTQ Trigger: CTGTGTTGTGGTATCACTGGGCCCTTTTCGTCTTCATAACGAGAACTCTTGGCCAAAGGTTTGAGGGTAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| 3UTR CCA 72 bp | TACATTATCTCTAACGAGTGTAAGACTTATGATGAATaGGTTCAATCACACAGAGAAACGCACACACTCACA | + |
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Preference number: 3 (lower is better) Translates to: YIISNECKTYDE*VQSHRETHTLT Trigger: TGTGAGTGTGTGCGTTTCTCTGTGTGATTGAACCCATTCATCATAAGTCTTACACTCGTTAGAGATAATGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS-3UTR GCA 90 bp | GTGTGCGGCACCAGACAGCTGGCGTCCTCCCTCTTTACCCTCAAACCTTTGGCCGTCTGCACAACACGATaGATGCGCACAGCATGCCCA | + |
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Preference number: 4 (lower is better) Translates to: VCGTRQLASSLFTLKPLAVCTTR*MRTACP Trigger: TGGGCATGCTGTGCGCATGCATCGTGTTGTGCAGAC...GGCCAAAGGTTTGAGGGTAAAGAGGGAGGACGCCAGCTGTCTGGTGCCGCACAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS-3UTR GCA 90 bp | CCACAACACAGTCCATTACTCCTCAGAGGTGACAGAAGCAGGCCACACCCTCCTGCACAACACGATGCATaGGCACAGCATGCCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: PQHSPLLLRGDRSRPHPPAQHDA*AQHAQQ Trigger: CTGCTGGGCATGCTGTGCGCATGCATCGTGTTGTGC...AGGAGGGTGTGGCCTGCTTCTGTCACCTCTGAGGAGTAATGGACTGTGTTGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS-3UTR TCA 90 bp | GTGTGCGGCACCAGACAGCTGGCGTCCTCCCTCTTTACCCTCAAACCTTTGGCCAAACCAAGAGCAGGATaGAGACAAACGTGGCAAGTC | + |
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Preference number: 4 (lower is better) Translates to: VCGTRQLASSLFTLKPLAKPRAG*RQTWQV Trigger: GACTTGCCACGTTTGTCTTCATCCTGCTCTTGGTTT...GGCCAAAGGTTTGAGGGTAAAGAGGGAGGACGCCAGCTGTCTGGTGCCGCACAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS-3UTR TCA 90 bp | GTGTGCGGCACCAGACAGCTGGCGTCCTCCCTCTTTACCCTCAAACCTTTGGCCGTCTTATACACTTTCTaGATGCTGCGATCAACCTCG | + |
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Preference number: 4 (lower is better) Translates to: VCGTRQLASSLFTLKPLAVLYTF*MLRSTS Trigger: CGAGGTTGATCGCAGCATTCAGAAAGTGTATAAGAC...GGCCAAAGGTTTGAGGGTAAAGAGGGAGGACGCCAGCTGTCTGGTGCCGCACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS-3UTR GCA 90 bp | CAGCTGGCGTCCTCCCTCTTTACCCTCAAACCTTTGGCCAAGAGTTCTCGTTATGCAGAGGATGCCAGCTaGCCCCCAGAAGATGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: QLASSLFTLKPLAKSSRYAEDAS*PPEDEV Trigger: AACCTCATCTTCTGGGGGGCAGCTGGCATCCTCTGC...ATAACGAGAACTCTTGGCCAAAGGTTTGAGGGTAAAGAGGGAGGACGCCAGCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS-3UTR GCA 90 bp | GTGTGCGGCACCAGACAGCTGGCGTCCTCCCTCTTTACCCTCAAACCTTTGGCCACACTTTCTGAATGCTaGGATCAACCTCGTTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: VCGTRQLASSLFTLKPLATLSEC*DQPRSP Trigger: TGGAGAACGAGGTTGATCGCAGCATTCAGAAAGTGT...GGCCAAAGGTTTGAGGGTAAAGAGGGAGGACGCCAGCTGTCTGGTGCCGCACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS-3UTR CCA 90 bp | ATATTCTTTAAAAGGACACTGGTGTGCGGCACCAGACAGCTGGCGTCCTCCCTCTGGCAGCGTCGGAGTTaGTCCCGTTGTAGGTCTTAT | + |
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Preference number: 4 (lower is better) Translates to: IFFKRTLVCGTRQLASSLWQRRS*SRCRSY Trigger: ATAAGACCTACAACGGGACCAACTCCGACGCTGCCA...GAGGGAGGACGCCAGCTGTCTGGTGCCGCACACCAGTGTCCTTTTAAAGAATAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS-3UTR GCA 90 bp | CAGCTGGCGTCCTCCCTCTTTACCCTCAAACCTTTGGCCAAGAGTTCTCGTTATGATCTCTACTCCGTCTaGACAACACGATGCATGCGC | + |
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Preference number: 4 (lower is better) Translates to: QLASSLFTLKPLAKSSRYDLYSV*TTRCMR Trigger: GCGCATGCATCGTGTTGTGCAGACGGAGTAGAGATC...ATAACGAGAACTCTTGGCCAAAGGTTTGAGGGTAAAGAGGGAGGACGCCAGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS-3UTR CCA 90 bp | AGTCCATTACTCCTCAGAGGTGACAGAAGCAGGCCACACCCTCCTATAGCTCTATGCCGTTACAGCTTTTaGCAGTCTCTCTGCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SPLLLRGDRSRPHPPIALCRYSF*QSLCSS Trigger: GCTGCTGCAGAGAGACTGCCAAAAGCTGTAACGGCA...TAGAGCTATAGGAGGGTGTGGCCTGCTTCTGTCACCTCTGAGGAGTAATGGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| 3UTR CAA 72 bp | AGACAGCTGGCGTCCTCCCTCTTTACCCTCAAACCTTaGGCCAAGAGTTCTCGTTATGAAGACGAAAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: RQLASSLFTLKP*AKSSRYEDEKG Trigger: GCCCTTTTCGTCTTCATAACGAGAACTCTTGGCCAAAGGTTTGAGGGTAAAGAGGGAGGACGCCAGCTGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS-3UTR TCA 90 bp | GCTGCAGGCCTGCTCAATTCACCTTCTGAATCAGAACAAGGATACTACAAATTAAGGCTCCTACAGCTATaGTCACCACGGCAGGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: AAGLLNSPSESEQGYYKLRLLQL*SPRQGR Trigger: TCTTCCCTGCCGTGGTGATCATAGCTGTAGGAGCCT...TAATTTGTAGTATCCTTGTTCTGATTCAGAAGGTGAATTGAGCAGGCCTGCAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS-3UTR GCA 90 bp | ATATTCTTTAAAAGGACACTGGTGTGCGGCACCAGACAGCTGGCGTCCTCCCTCTATACACTTTCTGAATaGTGCGATCAACCTCGTTCT | + |
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Preference number: 4 (lower is better) Translates to: IFFKRTLVCGTRQLASSLYTLSE*CDQPRS Trigger: AGAACGAGGTTGATCGCAGCATTCAGAAAGTGTATA...GAGGGAGGACGCCAGCTGTCTGGTGCCGCACACCAGTGTCCTTTTAAAGAATAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS-3UTR CCA 90 bp | ACATACTATTTTGCTAGTCTCCATGGGTACATTATCTCTAACGAGTGTAAGACTAGAGGTCAGAGGGGTTaGCCAGGCTGCCGTTACAGC | + |
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Preference number: 4 (lower is better) Translates to: TYYFASLHGYIISNECKTRGQRG*PGCRYS Trigger: GCTGTAACGGCAGCCTGGCCAACCCCTCTGACCTCT...AGTCTTACACTCGTTAGAGATAATGTACCCATGGAGACTAGCAAAATAGTATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS-3UTR TCA 90 bp | CAATTGAGATCACATCTACATACTATTTTGCTAGTCTCCATGGGTACATTATCTCAACAACCACTTCTGTaGCGAAAACCAAGAGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: QLRSHLHTILLVSMGTLSQQPLL*RKPRAG Trigger: TCCTGCTCTTGGTTTTCGTCACAGAAGTGGTTGTTG...AGATAATGTACCCATGGAGACTAGCAAAATAGTATGTAGATGTGATCTCAATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS-3UTR GCA 90 bp | ACATACTATTTTGCTAGTCTCCATGGGTACATTATCTCTAACGAGTGTAAGACTGCTGCCCAGATAACATaGATCAAGATTTCTTGTAGC | + |
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Preference number: 4 (lower is better) Translates to: TYYFASLHGYIISNECKTAAQIT*IKISCS Trigger: GCTACAAGAAATCTTGATGCATGTTATCTGGGCAGC...AGTCTTACACTCGTTAGAGATAATGTACCCATGGAGACTAGCAAAATAGTATGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS CCA 90 bp | CTCCCACGTAGCAGAGGATGCCAGCTGCCCCCTGGGGACAGCCGCTaGCTCTGCGAGGACTCAGACAAAGACAGCGGACCCGACTCACAG | + |
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Preference number: 5 (lower is better) Translates to: LPRSRGCQLPPGDSR*LCEDSDKDSGPDSQ Trigger: CTGTGAGTCGGGTCCGCTGTCTTTGTCTGAGTCCTCGCAGAGCCAGCGGCTGTCCCCAGGGGGCAGCTGGCATCCTCTGCTACGTGGGAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215906.2 |
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| CDS GCA 90 bp | ATAGGTGATGAAGACATAGGCTCCCACGTAGCAGAGGATGCCAGCTaGCCCCTGGGGACAGCCGCTGGCTCTGCGAGGACTCAGACAAAG | + |
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Preference number: 5 (lower is better) Translates to: IGDEDIGSHVAEDAS*PLGTAAGSARTQTK Trigger: CTTTGTCTGAGTCCTCGCAGAGCCAGCGGCTGTCCCCAGGGGGCAGCTGGCATCCTCTGCTACGTGGGAGCCTATGTCTTCATCACCTAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215906.2 |
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| CDS CCA 90 bp | TCACAACAAGAGCCTCACAGCCCTCGGCGTAGAGGTCAGAGGGGTTaGCCAGGCTGCCGTTACAGCTTTTGGCAGTCTCTCTGCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: SQQEPHSPRRRGQRG*PGCRYSFWQSLCSS Trigger: GCTGCTGCAGAGAGACTGCCAAAAGCTGTAACGGCAGCCTGGCCAACCCCTCTGACCTCTACGCCGAGGGCTGTGAGGCTCTTGTTGTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034876.10 ENSMUST00000215906.2 |
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| CDS-3UTR CAA 90 bp | GTGCGGCACCAGACAGCTGGCGTCCTCCCTCTTTACCCTCAAACCTTTGGCCAACTGCCGTTACAGCTTTaGGCAGTCTCTCTGCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: VRHQTAGVLPLYPQTFGQLPLQL*AVSLQQ Trigger: CTGCTGCAGAGAGACTGCCAAAAGCTGTAACGGCAG...TTGGCCAAAGGTTTGAGGGTAAAGAGGGAGGACGCCAGCTGTCTGGTGCCGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS GCA 90 bp | CCAGGTTCACAATACCACCCTTCACGAAACACCATGGCCTCTCTGTaGTCTGGTAGGGAAGGCCTGGGGTTGATGTTGCTGGTGCTGATG | + |
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Preference number: 5 (lower is better) Translates to: PGSQYHPSRNTMASL*SGREGLGLMLLVLM Trigger: CATCAGCACCAGCAACATCAACCCCAGGCCTTCCCTACCAGAGCACAGAGAGGCCATGGTGTTTCGTGAAGGGTGGTATTGTGAACCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216320.2 |
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| CDS GCA 90 bp | ATAGGTGATGAAGACATAGGCTCCCACGTAGCAGAGGATGCCAGCTaGCCCCACAGAGCCCAGGTTCACAATACCACCCTTCACGAAACA | + |
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Preference number: 5 (lower is better) Translates to: IGDEDIGSHVAEDAS*PHRAQVHNTTLHET Trigger: TGTTTCGTGAAGGGTGGTATTGTGAACCTGGGCTCTGTGGGGGCAGCTGGCATCCTCTGCTACGTGGGAGCCTATGTCTTCATCACCTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216320.2 |
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| CDS GCA 90 bp | GCACAACACGATGCATGCGCACAGCATGCCCAGCAGCTGAATAGCTaGAAAGGCCAACGCTGCCCAGATAACATGCATCAAGATTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: AQHDACAQHAQQLNS*KGQRCPDNMHQDFL Trigger: CAAGAAATCTTGATGCATGTTATCTGGGCAGCGTTGGCCTTTGCAGCTATTCAGCTGCTGGGCATGCTGTGCGCATGCATCGTGTTGTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034876.10 ENSMUST00000215906.2 |
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| CDS-3UTR CAA 90 bp | CAGCTGGCGTCCTCCCTCTTTACCCTCAAACCTTTGGCCAAGAGTTCTCGTTATCCTCGTTCTCCACCTTaGCTCTGTACACGTATCCCA | + |
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Preference number: 5 (lower is better) Translates to: QLASSLFTLKPLAKSSRYPRSPP*LCTRIP Trigger: TGGGATACGTGTACAGAGCAAAGGTGGAGAACGAGG...ATAACGAGAACTCTTGGCCAAAGGTTTGAGGGTAAAGAGGGAGGACGCCAGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS-3UTR CAA 90 bp | CTCTTTACCCTCAAACCTTTGGCCAAGAGTTCTCGTTATGAAGACGAAAAGGGCCCCCAGAAGATGAGGTaGAGGAAGACCAGCACGGTC | + |
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Preference number: 5 (lower is better) Translates to: LFTLKPLAKSSRYEDEKGPQKMR*RKTSTV Trigger: GACCGTGCTGGTCTTCCTCAACCTCATCTTCTGGGG...GCCCTTTTCGTCTTCATAACGAGAACTCTTGGCCAAAGGTTTGAGGGTAAAGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034876.10 |
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| CDS GCA 90 bp | CGTCGGAGTTGGTCCCGTTGTAGGTCTTATACACTTTCTGAATGCTaGGATCAACCTCGTTCTCCACCTTTGCTCTGTACACGTATCCCA | + |
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Preference number: 5 (lower is better) Translates to: RRSWSRCRSYTLSEC*DQPRSPPLLCTRIP Trigger: TGGGATACGTGTACAGAGCAAAGGTGGAGAACGAGGTTGATCGCAGCATTCAGAAAGTGTATAAGACCTACAACGGGACCAACTCCGACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034876.10 ENSMUST00000215906.2 ENSMUST00000216320.2 |
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| CDS GCA 90 bp | CAGCGTCGGAGTTGGTCCCGTTGTAGGTCTTATACACTTTCTGAATaGTGCGATCAACCTCGTTCTCCACCTTTGCTCTGTACACGTATC | + |
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Preference number: 5 (lower is better) Translates to: QRRSWSRCRSYTLSE*CDQPRSPPLLCTRI Trigger: GATACGTGTACAGAGCAAAGGTGGAGAACGAGGTTGATCGCAGCATTCAGAAAGTGTATAAGACCTACAACGGGACCAACTCCGACGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034876.10 ENSMUST00000215906.2 ENSMUST00000216320.2 |
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| CDS GCA 72 bp | AGCCCTCGGCGTAGAGGTCAGAGGGGTTGGCCAGGCTaGCGTTACAGCTTTTGGCAGTCTCTCTGCAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: SPRRRGQRGWPG*RYSFWQSLCSS Trigger: GCTGCTGCAGAGAGACTGCCAAAAGCTGTAACGGCAGCCTGGCCAACCCCTCTGACCTCTACGCCGAGGGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034876.10 ENSMUST00000215906.2 |
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| CDS CCA 72 bp | GAGCCTCACAGCCCTCGGCGTAGAGGTCAGAGGGGTTaGCCAGGCTGCCGTTACAGCTTTTGGCAGTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: EPHSPRRRGQRG*PGCRYSFWQSL Trigger: GAGAGACTGCCAAAAGCTGTAACGGCAGCCTGGCCAACCCCTCTGACCTCTACGCCGAGGGCTGTGAGGCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034876.10 ENSMUST00000215906.2 |
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| CDS CCA 72 bp | GCCCAGGTTCACAATACCACCCTTCACGAAACACCATaGCCTCTCTGTGCTCTGGTAGGGAAGGCCTGGGGT | + |
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Preference number: 6 (lower is better) Translates to: AQVHNTTLHETP*PLCALVGKAWG Trigger: ACCCCAGGCCTTCCCTACCAGAGCACAGAGAGGCCATGGTGTTTCGTGAAGGGTGGTATTGTGAACCTGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216320.2 |
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| CDS GCA 72 bp | CAATACCACCCTTCACGAAACACCATGGCCTCTCTGTaGTCTGGTAGGGAAGGCCTGGGGTTGATGTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: QYHPSRNTMASL*SGREGLGLMLL Trigger: CAGCAACATCAACCCCAGGCCTTCCCTACCAGAGCACAGAGAGGCCATGGTGTTTCGTGAAGGGTGGTATTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216320.2 |
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| CDS GCA 72 bp | GATGCATGCGCACAGCATGCCCAGCAGCTGAATAGCTaGAAAGGCCAACGCTGCCCAGATAACATGCATCAA | + |
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Preference number: 6 (lower is better) Translates to: DACAQHAQQLNS*KGQRCPDNMHQ Trigger: TTGATGCATGTTATCTGGGCAGCGTTGGCCTTTGCAGCTATTCAGCTGCTGGGCATGCTGTGCGCATGCATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034876.10 ENSMUST00000215906.2 |
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| CDS GCA 72 bp | TGGTCCCGTTGTAGGTCTTATACACTTTCTGAATGCTaGGATCAACCTCGTTCTCCACCTTTGCTCTGTACA | + |
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Preference number: 6 (lower is better) Translates to: WSRCRSYTLSEC*DQPRSPPLLCT Trigger: TGTACAGAGCAAAGGTGGAGAACGAGGTTGATCGCAGCATTCAGAAAGTGTATAAGACCTACAACGGGACCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034876.10 ENSMUST00000215906.2 ENSMUST00000216320.2 |
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| CDS TCA 72 bp | TTTTGTTTCTTTGAACCAATCTGTATTTTCCCAGTCTaGATAGTTATGAATTCCACAACAGTGCAACTGTCT | + |
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Preference number: 6 (lower is better) Translates to: FCFFEPICIFPV*IVMNSTTVQLS Trigger: AGACAGTTGCACTGTTGTGGAATTCATAACTATTCAGACTGGGAAAATACAGATTGGTTCAAAGAAACAAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034876.10 ENSMUST00000215906.2 |
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