Pregenerated sensors for TSPAN18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027217Ensembl transcript IDs: ENSMUST00000028646.4, ENSMUST00000111265.9
Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTAGGCTCCATATCTGGCTTCTCAGTCCCTCCCTGTCCCAGCCCTaGCCATCTCTGGAAGCCTGGGCTAGTTCTGGGTGGCAGCCGCTG | + |
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Preference number: 1 (lower is better) Translates to: PRLHIWLLSPSLSQP*PSLEAWASSGWQPL Trigger: CAGCGGCTGCCACCCAGAACTAGCCCAGGCTTCCAGAGATGGGCAGGGCTGGGACAGGGAGGGACTGAGAAGCCAGATATGGAGCCTAGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR GCA 90 bp | CAGCTGTCCCTTAGGCCACTGCTCTGGGACAGGAAGTGGCTGTTCTaGTCACTACTGGCTGAGGCATCTTGGGGTGAAGGAAGAGCTCCC | + |
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Preference number: 1 (lower is better) Translates to: QLSLRPLLWDRKWLF*SLLAEASWGEGRAP Trigger: GGGAGCTCTTCCTTCACCCCAAGATGCCTCAGCCAGTAGTGAGCAGAACAGCCACTTCCTGTCCCAGAGCAGTGGCCTAAGGGACAGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR TCA 90 bp | TGCAGAGTCTGTCCTTGTGTTGTGAAAAGCCGGCTCCTTGGGGCCTaGGGACCGGGCTCCTCCTCCAGGATGTGTTTCTACCTCCTGGTT | + |
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Preference number: 1 (lower is better) Translates to: CRVCPCVVKSRLLGA*GPGSSSRMCFYLLV Trigger: AACCAGGAGGTAGAAACACATCCTGGAGGAGGAGCCCGGTCCTCAGGCCCCAAGGAGCCGGCTTTTCACAACACAAGGACAGACTCTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR TCA 90 bp | GGGGCATGGCCCACGGGGACAGGTGATGTATCACAGTTGGATCTCTaGCAGAGGTACAAGCAGGGCAGAGTGGACACAGTACGGACTGTA | + |
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Preference number: 1 (lower is better) Translates to: GAWPTGTGDVSQLDL*QRYKQGRVDTVRTV Trigger: TACAGTCCGTACTGTGTCCACTCTGCCCTGCTTGTACCTCTGTCAGAGATCCAACTGTGATACATCACCTGTCCCCGTGGGCCATGCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR TCA 90 bp | CCATTTGCCTTCCTAGACAGTTGGAGTCCAGTACGTGCTGGGTTCTaGGTCAGCCTGGGTCCTCTTAGTCTGGGGGTGCAAGCCAGCAGA | + |
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Preference number: 1 (lower is better) Translates to: PFAFLDSWSPVRAGF*VSLGPLSLGVQASR Trigger: TCTGCTGGCTTGCACCCCCAGACTAAGAGGACCCAGGCTGACTCAGAACCCAGCACGTACTGGACTCCAACTGTCTAGGAAGGCAAATGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR GCA 90 bp | AGTCTTAGCTCCTCGCCTGTCAGATACAGCTGTCCCTTAGGCCACTaGTCTGGGACAGGAAGTGGCTGTTCTGCTCACTACTGGCTGAGG | + |
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Preference number: 1 (lower is better) Translates to: SLSSSPVRYSCPLGH*SGTGSGCSAHYWLR Trigger: CCTCAGCCAGTAGTGAGCAGAACAGCCACTTCCTGTCCCAGAGCAGTGGCCTAAGGGACAGCTGTATCTGACAGGCGAGGAGCTAAGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR CCA 90 bp | GGAGGTGATGGTGACATCAGAGCATCTGAAGGCAGGAGGCTGAGTTaGGAGGTAGTGAGATCCATCCGTATGTGGAGGGATGCAGGGGTG | + |
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Preference number: 1 (lower is better) Translates to: GGDGDIRASEGRRLS*EVVRSIRMWRDAGV Trigger: CACCCCTGCATCCCTCCACATACGGATGGATCTCACTACCTCCCAACTCAGCCTCCTGCCTTCAGATGCTCTGATGTCACCATCACCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR CCA 90 bp | TGGGACAGGAAGTGGCTGTTCTGCTCACTACTGGCTGAGGCATCTTaGGGTGAAGGAAGAGCTCCCCTCCATTCCTCTGGGAGTACACAG | + |
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Preference number: 1 (lower is better) Translates to: WDRKWLFCSLLAEAS*GEGRAPLHSSGSTQ Trigger: CTGTGTACTCCCAGAGGAATGGAGGGGAGCTCTTCCTTCACCCCAAGATGCCTCAGCCAGTAGTGAGCAGAACAGCCACTTCCTGTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR CCA 90 bp | TTAGGCCACTGCTCTGGGACAGGAAGTGGCTGTTCTGCTCACTACTaGCTGAGGCATCTTGGGGTGAAGGAAGAGCTCCCCTCCATTCCT | + |
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Preference number: 1 (lower is better) Translates to: LGHCSGTGSGCSAHY*LRHLGVKEELPSIP Trigger: AGGAATGGAGGGGAGCTCTTCCTTCACCCCAAGATGCCTCAGCCAGTAGTGAGCAGAACAGCCACTTCCTGTCCCAGAGCAGTGGCCTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR CCA 90 bp | CACCCAGACAGCAGAATAGAACAGGCTATGGCTATGACTCCCAGGTaGCAGAAGGGCAAAGGAAGGCTGGAGTTCAGGTCAGGCTCTTCC | + |
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Preference number: 1 (lower is better) Translates to: HPDSRIEQAMAMTPR*QKGKGRLEFRSGSS Trigger: GGAAGAGCCTGACCTGAACTCCAGCCTTCCTTTGCCCTTCTGCCACCTGGGAGTCATAGCCATAGCCTGTTCTATTCTGCTGTCTGGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR CCA 90 bp | TGTCAGATACAGCTGTCCCTTAGGCCACTGCTCTGGGACAGGAAGTaGCTGTTCTGCTCACTACTGGCTGAGGCATCTTGGGGTGAAGGA | + |
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Preference number: 1 (lower is better) Translates to: CQIQLSLRPLLWDRK*LFCSLLAEASWGEG Trigger: TCCTTCACCCCAAGATGCCTCAGCCAGTAGTGAGCAGAACAGCCACTTCCTGTCCCAGAGCAGTGGCCTAAGGGACAGCTGTATCTGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR TCA 90 bp | TGGGAGCGCTTCAGCGTAAGTGTGGAAAGTTCTGGTGAGGGACTCTaGTCTGCCCTGGAATTGCCTAGGCTCCATATCTGGCTTCTCAGT | + |
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Preference number: 1 (lower is better) Translates to: WERFSVSVESSGEGL*SALELPRLHIWLLS Trigger: ACTGAGAAGCCAGATATGGAGCCTAGGCAATTCCAGGGCAGATCAGAGTCCCTCACCAGAACTTTCCACACTTACGCTGAAGCGCTCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR GCA 90 bp | GAGGCTGAGTTGGGAGGTAGTGAGATCCATCCGTATGTGGAGGGATaGAGGGGTGAATTCTTGGCAGGGACCTTGAAGAACACATTCAAG | + |
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Preference number: 1 (lower is better) Translates to: EAELGGSEIHPYVEG*RGEFLAGTLKNTFK Trigger: CTTGAATGTGTTCTTCAAGGTCCCTGCCAAGAATTCACCCCTGCATCCCTCCACATACGGATGGATCTCACTACCTCCCAACTCAGCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR CCA 90 bp | GAGGGGCCCCCTGATCTGGTGACTCAGCCTCTAGGGAGCTTACTATaGGGATGCCAATTAAGCTGTCATAAAGACAACTTCCGTATAGCA | + |
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Preference number: 1 (lower is better) Translates to: EGPPDLVTQPLGSLL*GCQLSCHKDNFRIA Trigger: TGCTATACGGAAGTTGTCTTTATGACAGCTTAATTGGCATCCCCATAGTAAGCTCCCTAGAGGCTGAGTCACCAGATCAGGGGGCCCCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR TCA 90 bp | TTGAAGAACACATTCAAGCCTCAGCTCTGGGTAGAAAGAGAGAAATaGACAATACTGGGGTGTCTTCCACCTGGGAGAACAGGGGTGGGG | + |
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Preference number: 1 (lower is better) Translates to: LKNTFKPQLWVEREK*TILGCLPPGRTGVG Trigger: CCCCACCCCTGTTCTCCCAGGTGGAAGACACCCCAGTATTGTTCATTTCTCTCTTTCTACCCAGAGCTGAGGCTTGAATGTGTTCTTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR CCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTTGGTTaGTTGGTTGGTTGTGAACCTATTAGTCTGGGTAATCTGAGCCTA | + |
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Preference number: 1 (lower is better) Translates to: CVCVCVCVCVCVSVG*LVGCEPISLGNLSL Trigger: TAGGCTCAGATTACCCAGACTAATAGGTTCACAACCAACCAACCAACCAACAGACACACACACACACACACACACACACACACACACACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR TCA 90 bp | TCTGGCCGTTTGGGCTGGCCTTGCTTCCGCCCCTGGGGCCAGAGGACAGGGAAGTGGGCAGTGGTGGGCTaGGTGTCTTCAGGCCAAGGC | + |
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Preference number: 2 (lower is better) Translates to: SGRLGWPCFRPWGQRTGKWAVVG*VSSGQG Trigger: GCCTTGGCCTGAAGACACTCAGCCCACCACTGCCCA...CTTCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGGCCAGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
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| 3UTR-3UTR CCA 90 bp | GGCCGTTTGGGCTGGCCTTGCTTCCGCCCCTGGGGCCAGAGGACAGGGAAGAGAGCTTCTGGGCAGTGGTaGGCTGAGTGTCTTCAGGCC | + |
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Preference number: 2 (lower is better) Translates to: GRLGWPCFRPWGQRTGKRASGQW*AECLQA Trigger: GGCCTGAAGACACTCAGCCCACCACTGCCCAGAAGC...TCTCTTCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGGCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
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| 3UTR-3UTR CCA 90 bp | TGGCCGTTTGGGCTGGCCTTGCTTCCGCCCCTGGGGCCAGAGGACAGGGAAGAGCTGGCTTCTGGGCAGTaGTGGGCTGAGTGTCTTCAG | + |
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Preference number: 2 (lower is better) Translates to: WPFGLALLPPLGPEDREELASGQ*WAECLQ Trigger: CTGAAGACACTCAGCCCACCACTGCCCAGAAGCCAG...CTCTTCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGGCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
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| 3UTR-3UTR CCA 90 bp | GGCAGTTCCTGGCCAGTTTACATCGGGGTGGAGTCCTGGCTGGAGCGACAGCAGCCTTGCTTCCGCCCCTaGGGCCAGAGGACAGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: GSSWPVYIGVESWLERQQPCFRP*GQRTGK Trigger: CTTCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGG...CTGCTGTCGCTCCAGCCAGGACTCCACCCCGATGTAAACTGGCCAGGAACTGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR CCA 90 bp | CCCTGCCCATCTCTGGAAGCCTGGGCTAGTTCTGGGTGGCAGCCGCTGTGGTTGATGCTTCTGGCCGTTTaGGCTGGCCTTGCTTCCGCC | + |
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Preference number: 2 (lower is better) Translates to: PCPSLEAWASSGWQPLWLMLLAV*AGLASA Trigger: GGCGGAAGCAAGGCCAGCCCAAACGGCCAGAAGCAT...CAACCACAGCGGCTGCCACCCAGAACTAGCCCAGGCTTCCAGAGATGGGCAGGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR CCA 90 bp | CTGCCCTGGAATTGCCTAGGCTCCATATCTGGCTTCTCAGTCCCTCCCTGTCCCCTGGGAGAACAGGGGTaGGGCATGGCCCACGGGGAC | + |
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Preference number: 2 (lower is better) Translates to: LPWNCLGSISGFSVPPCPLGEQG*GMAHGD Trigger: GTCCCCGTGGGCCATGCCCCACCCCTGTTCTCCCAG...GGGACAGGGAGGGACTGAGAAGCCAGATATGGAGCCTAGGCAATTCCAGGGCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR CCA 90 bp | CCCTGCCCATCTCTGGAAGCCTGGGCTAGTTCTGGGTGGCAGCCGCTGTGGTTGCAGTTTACATCGGGGTaGAGTCCTGGCTGGAGCGAC | + |
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Preference number: 2 (lower is better) Translates to: PCPSLEAWASSGWQPLWLQFTSG*SPGWSD Trigger: GTCGCTCCAGCCAGGACTCCACCCCGATGTAAACTG...CAACCACAGCGGCTGCCACCCAGAACTAGCCCAGGCTTCCAGAGATGGGCAGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR TCA 90 bp | CTGCCCTGGAATTGCCTAGGCTCCATATCTGGCTTCTCAGTCCCTCCCTGTCCCTGGGCAGTGGTGGGCTaGGTGTCTTCAGGCCAAGGC | + |
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Preference number: 2 (lower is better) Translates to: LPWNCLGSISGFSVPPCPWAVVG*VSSGQG Trigger: GCCTTGGCCTGAAGACACTCAGCCCACCACTGCCCA...GGGACAGGGAGGGACTGAGAAGCCAGATATGGAGCCTAGGCAATTCCAGGGCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR CCA 90 bp | CCCTGCCCATCTCTGGAAGCCTGGGCTAGTTCTGGGTGGCAGCCGCTGTGGTTGGGCAGGAGGCTGAGTTaGGAGGTAGTGAGATCCATC | + |
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Preference number: 2 (lower is better) Translates to: PCPSLEAWASSGWQPLWLGRRLS*EVVRSI Trigger: GATGGATCTCACTACCTCCCAACTCAGCCTCCTGCC...CAACCACAGCGGCTGCCACCCAGAACTAGCCCAGGCTTCCAGAGATGGGCAGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR CAA 90 bp | CACTCCAGTCTGACAGGGCCAAGGGGCTCTGAGGCTGATGAACCTTaGGTCTCAGGAACAGCTGGTCCCAGGCCAGCCCTAGGTCCTTGT | + |
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Preference number: 2 (lower is better) Translates to: HSSLTGPRGSEADEP*VSGTAGPRPALGPC Trigger: ACAAGGACCTAGGGCTGGCCTGGGACCAGCTGTTCCTGAGACCAAAGGTTCATCAGCCTCAGAGCCCCTTGGCCCTGTCAGACTGGAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR GCA 90 bp | CAGCAAAAGGTCAGAAGGTGTCACGGTAGGAGATGCTGTGGGGTTAAGTCTGCACGTTTGGGCTGGCCTTaGTTCCGCCCCTGGGGCCAG | + |
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Preference number: 2 (lower is better) Translates to: QQKVRRCHGRRCCGVKSARLGWP*FRPWGQ Trigger: CTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACG...TGCAGACTTAACCCCACAGCATCTCCTACCGTGACACCTTCTGACCTTTTGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR CCA 90 bp | AGTTGGGAGGTAGTGAGATCCATCCGTATGTGGAGGGATGCAGGGGTGAATTCTGGTCTCAGGAACAGCTaGTCCCAGGCCAGCCCTAGG | + |
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Preference number: 2 (lower is better) Translates to: SWEVVRSIRMWRDAGVNSGLRNS*SQASPR Trigger: CCTAGGGCTGGCCTGGGACCAGCTGTTCCTGAGACC...AGAATTCACCCCTGCATCCCTCCACATACGGATGGATCTCACTACCTCCCAACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR CCA 90 bp | CTGCCCTGGAATTGCCTAGGCTCCATATCTGGCTTCTCAGTCCCTCCCTGTCCCAGGCTGATGAACCTTTaGTCTCAGGAACAGCTGGTC | + |
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Preference number: 2 (lower is better) Translates to: LPWNCLGSISGFSVPPCPRLMNL*SQEQLV Trigger: GACCAGCTGTTCCTGAGACCAAAGGTTCATCAGCCT...GGGACAGGGAGGGACTGAGAAGCCAGATATGGAGCCTAGGCAATTCCAGGGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR TCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTATCAGAGTTCCTGGGGATGAAGGTGCTGGGTCTGGTGAGGGACTCTaGTCTGCCCTGGAATTGCCT | + |
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Preference number: 2 (lower is better) Translates to: VCVCVCVCIRVPGDEGAGSGEGL*SALELP Trigger: AGGCAATTCCAGGGCAGATCAGAGTCCCTCACCAGA...CCCAGCACCTTCATCCCCAGGAACTCTGATACACACACACACACACACACACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR CCA 90 bp | AGTTGGGAGGTAGTGAGATCCATCCGTATGTGGAGGGATGCAGGGGTGAATTCTCTGGCTTCTGGGCAGTaGTGGGCTGAGTGTCTTCAG | + |
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Preference number: 2 (lower is better) Translates to: SWEVVRSIRMWRDAGVNSLASGQ*WAECLQ Trigger: CTGAAGACACTCAGCCCACCACTGCCCAGAAGCCAG...AGAATTCACCCCTGCATCCCTCCACATACGGATGGATCTCACTACCTCCCAACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR CCA 90 bp | CCCTGCCCATCTCTGGAAGCCTGGGCTAGTTCTGGGTGGCAGCCGCTGTGGTTGTGTCTGTTGGTTGGTTaGTTGGTTGTGAACCTATTA | + |
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Preference number: 2 (lower is better) Translates to: PCPSLEAWASSGWQPLWLCLLVG*LVVNLL Trigger: TAATAGGTTCACAACCAACCAACCAACCAACAGACA...CAACCACAGCGGCTGCCACCCAGAACTAGCCCAGGCTTCCAGAGATGGGCAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR GCA 90 bp | CCCTGCCCATCTCTGGAAGCCTGGGCTAGTTCTGGGTGGCAGCCGCTGTGGTTGAGCTTACTATGGGGATaGCAATTAAGCTGTCATAAA | + |
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Preference number: 2 (lower is better) Translates to: PCPSLEAWASSGWQPLWLSLLWG*QLSCHK Trigger: TTTATGACAGCTTAATTGGCATCCCCATAGTAAGCT...CAACCACAGCGGCTGCCACCCAGAACTAGCCCAGGCTTCCAGAGATGGGCAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR CCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTATCAGAGTTCCTGGGGATGAAGGTGCTGGGGACTCTGATCTGCCCTaGAATTGCCTAGGCTCCATA | + |
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Preference number: 2 (lower is better) Translates to: VCVCVCVCIRVPGDEGAGDSDLP*NCLGSI Trigger: TATGGAGCCTAGGCAATTCCAGGGCAGATCAGAGTC...CCCAGCACCTTCATCCCCAGGAACTCTGATACACACACACACACACACACACAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR CAA 90 bp | CATGAACTTCCAATCAATAGCCAAGCCATTTGCCTTCCTAGACAGTaGGAGTCCAGTACGTGCTGGGTTCTGAGTCAGCCTGGGTCCTCT | + |
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Preference number: 2 (lower is better) Translates to: HELPINSQAICLPRQ*ESSTCWVLSQPGSS Trigger: AGAGGACCCAGGCTGACTCAGAACCCAGCACGTACTGGACTCCAACTGTCTAGGAAGGCAAATGGCTTGGCTATTGATTGGAAGTTCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR TCA 90 bp | CAGCAAAAGGTCAGAAGGTGTCACGGTAGGAGATGCTGTGGGGTTAAGTCTGCACATGCACATGCTGTGTaGCTGGACGGAAATGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: QQKVRRCHGRRCCGVKSAHAHAV*LDGNER Trigger: CCTTTCATTTCCGTCCAGTCACACAGCATGTGCATG...TGCAGACTTAACCCCACAGCATCTCCTACCGTGACACCTTCTGACCTTTTGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR CCA 90 bp | GGTTGGTTGGTTGGTTGTGAACCTATTAGTCTGGGGTGTTTGTGTGTGTGTGTGTCGCTCTCCAGCAGATaGTGCTGCAGAGTCTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: GWLVGCEPISLGCLCVCVSLSSR*CCRVCP Trigger: AGGACAGACTCTGCAGCACCATCTGCTGGAGAGCGA...CACACACACACACAAACACCCCAGACTAATAGGTTCACAACCAACCAACCAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR CAA 90 bp | CATCCGTATGTGGAGGGATGCAGGGGTGAATTCTTGGCAGGGACCTaGAAGAACACATTCAAGCCTCAGCTCTGGGTAGAAAGAGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: HPYVEGCRGEFLAGT*KNTFKPQLWVEREK Trigger: TTTCTCTCTTTCTACCCAGAGCTGAGGCTTGAATGTGTTCTTCAAGGTCCCTGCCAAGAATTCACCCCTGCATCCCTCCACATACGGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR TCA 90 bp | CAAAGGAAGGCTGGAGTTCAGGTCAGGCTCTTCCATCTGAGAGAGGAGAGCAGAGTAGAAAGAGAGAAATaGACAATACTGGGGTGTCTT | + |
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Preference number: 2 (lower is better) Translates to: QRKAGVQVRLFHLREESRVEREK*TILGCL Trigger: AAGACACCCCAGTATTGTTCATTTCTCTCTTTCTAC...TCTGCTCTCCTCTCTCAGATGGAAGAGCCTGACCTGAACTCCAGCCTTCCTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR CCA 72 bp | GCTTCTGGCCGTTTGGGCTGGCCTTGCTTCCGCCCCTaGGGCCAGAGGACAGGGAAGAGAAGGGGCTGGCTT | + |
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Preference number: 3 (lower is better) Translates to: ASGRLGWPCFRP*GQRTGKRRGWL Trigger: AAGCCAGCCCCTTCTCTTCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGGCCAGAAGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
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| 3UTR TCA 72 bp | CCAGCAGATGGTGCTGCAGAGTCTGTCCTTGTGTTGTaGAAAGCCGGCTCCTTGGGGCCTGAGGACCGGGCT | + |
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Preference number: 3 (lower is better) Translates to: PADGAAESVLVL*KAGSLGPEDRA Trigger: AGCCCGGTCCTCAGGCCCCAAGGAGCCGGCTTTTCACAACACAAGGACAGACTCTGCAGCACCATCTGCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR CCA 72 bp | CAGAGTCTGTCCTTGTGTTGTGAAAAGCCGGCTCCTTaGGGCCTGAGGACCGGGCTCCTCCTCCAGGATGTG | + |
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Preference number: 3 (lower is better) Translates to: QSLSLCCEKPAP*GLRTGLLLQDV Trigger: CACATCCTGGAGGAGGAGCCCGGTCCTCAGGCCCCAAGGAGCCGGCTTTTCACAACACAAGGACAGACTCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR CCA 72 bp | TGGATGCAGGCAGTTCCTGGCCAGTTTACATCGGGGTaGAGTCCTGGCTGGAGCGACAGCAGCCTGGAGATG | + |
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Preference number: 3 (lower is better) Translates to: WMQAVPGQFTSG*SPGWSDSSLEM Trigger: CATCTCCAGGCTGCTGTCGCTCCAGCCAGGACTCCACCCCGATGTAAACTGGCCAGGAACTGCCTGCATCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR CCA 72 bp | AGGTGCTGGGTTCAGAACCCAGGTAGGCCAGGGGCTTaGGACAGGATAATGGGGAGCATGAGCCACAGGTCC | + |
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Preference number: 3 (lower is better) Translates to: RCWVQNPGRPGA*DRIMGSMSHRS Trigger: GGACCTGTGGCTCATGCTCCCCATTATCCTGTCCCAAGCCCCTGGCCTACCTGGGTTCTGAACCCAGCACCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR CCA 72 bp | GTTCCTGGCCAGTTTACATCGGGGTGGAGTCCTGGCTaGAGCGACAGCAGCCTGGAGATGACCTTGTCATGC | + |
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Preference number: 3 (lower is better) Translates to: VPGQFTSGWSPG*SDSSLEMTLSC Trigger: GCATGACAAGGTCATCTCCAGGCTGCTGTCGCTCCAGCCAGGACTCCACCCCGATGTAAACTGGCCAGGAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR CAA 90 bp | GGTTGGTTGGTTGGTTGTGAACCTATTAGTCTGGGGTGTTTGTGTGTGTGTGTGCCGTTTGGGCTGGCCTaGCTTCCGCCCCTGGGGCCA | + |
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Preference number: 3 (lower is better) Translates to: GWLVGCEPISLGCLCVCVPFGLA*LPPLGP Trigger: TGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGG...CACACACACACACAAACACCCCAGACTAATAGGTTCACAACCAACCAACCAACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
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| 3UTR-3UTR CAA 90 bp | CTGCCCTGGAATTGCCTAGGCTCCATATCTGGCTTCTCAGTCCCTCCCTGTCCCTGCCTTCCTAGACAGTaGGAGTCCAGTACGTGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: LPWNCLGSISGFSVPPCPCLPRQ*ESSTCW Trigger: CCAGCACGTACTGGACTCCAACTGTCTAGGAAGGCA...GGGACAGGGAGGGACTGAGAAGCCAGATATGGAGCCTAGGCAATTCCAGGGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR CCA 72 bp | ACAGTACGGACTGTAGAGCTGGATGCAGGCAGTTCCTaGCCAGTTTACATCGGGGTGGAGTCCTGGCTGGAG | + |
|
Preference number: 3 (lower is better) Translates to: TVRTVELDAGSS*PVYIGVESWLE Trigger: CTCCAGCCAGGACTCCACCCCGATGTAAACTGGCCAGGAACTGCCTGCATCCAGCTCTACAGTCCGTACTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR CCA 72 bp | GGGCATGGCCCACGGGGACAGGTGATGTATCACAGTTaGATCTCTGACAGAGGTACAAGCAGGGCAGAGTGG | + |
|
Preference number: 3 (lower is better) Translates to: GHGPRGQVMYHS*ISDRGTSRAEW Trigger: CCACTCTGCCCTGCTTGTACCTCTGTCAGAGATCCAACTGTGATACATCACCTGTCCCCGTGGGCCATGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR CCA 72 bp | TGCTCTGGGACAGGAAGTGGCTGTTCTGCTCACTACTaGCTGAGGCATCTTGGGGTGAAGGAAGAGCTCCCC | + |
|
Preference number: 3 (lower is better) Translates to: CSGTGSGCSAHY*LRHLGVKEELP Trigger: GGGGAGCTCTTCCTTCACCCCAAGATGCCTCAGCCAGTAGTGAGCAGAACAGCCACTTCCTGTCCCAGAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR GCA 72 bp | TCCTCGCCTGTCAGATACAGCTGTCCCTTAGGCCACTaGTCTGGGACAGGAAGTGGCTGTTCTGCTCACTAC | + |
|
Preference number: 3 (lower is better) Translates to: SSPVRYSCPLGH*SGTGSGCSAHY Trigger: GTAGTGAGCAGAACAGCCACTTCCTGTCCCAGAGCAGTGGCCTAAGGGACAGCTGTATCTGACAGGCGAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR TCA 72 bp | TTCAGAGACACCCACTCCCCGGAAGGCCAGGCTGGGTaGGGACCACATAAAGAGGAGAGAAAATGGGAGAAG | + |
|
Preference number: 3 (lower is better) Translates to: FRDTHSPEGQAG*GPHKEERKWEK Trigger: CTTCTCCCATTTTCTCTCCTCTTTATGTGGTCCTCACCCAGCCTGGCCTTCCGGGGAGTGGGTGTCTCTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR TCA 72 bp | TTCCTAGACAGTTGGAGTCCAGTACGTGCTGGGTTCTaGGTCAGCCTGGGTCCTCTTAGTCTGGGGGTGCAA | + |
|
Preference number: 3 (lower is better) Translates to: FLDSWSPVRAGF*VSLGPLSLGVQ Trigger: TTGCACCCCCAGACTAAGAGGACCCAGGCTGACTCAGAACCCAGCACGTACTGGACTCCAACTGTCTAGGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR TCA 72 bp | TGTGTGTGTGTGTGTGTGTATCAGAGTTCCTGGGGATaGAGGTGCTGGGTTCAGAACCCAGGTAGGCCAGGG | + |
|
Preference number: 3 (lower is better) Translates to: CVCVCVYQSSWG*RCWVQNPGRPG Trigger: CCCTGGCCTACCTGGGTTCTGAACCCAGCACCTTCATCCCCAGGAACTCTGATACACACACACACACACACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR CCA 72 bp | AGGCTGAGTTGGGAGGTAGTGAGATCCATCCGTATGTaGAGGGATGCAGGGGTGAATTCTTGGCAGGGACCT | + |
|
Preference number: 3 (lower is better) Translates to: RLSWEVVRSIRM*RDAGVNSWQGP Trigger: AGGTCCCTGCCAAGAATTCACCCCTGCATCCCTCCACATACGGATGGATCTCACTACCTCCCAACTCAGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR-3UTR CAA 90 bp | CTGCCCTGGAATTGCCTAGGCTCCATATCTGGCTTCTCAGTCCCTCCCTGTCCCTTCTTGGCAGGGACCTaGAAGAACACATTCAAGCCT | + |
|
Preference number: 3 (lower is better) Translates to: LPWNCLGSISGFSVPPCPFLAGT*KNTFKP Trigger: AGGCTTGAATGTGTTCTTCAAGGTCCCTGCCAAGAA...GGGACAGGGAGGGACTGAGAAGCCAGATATGGAGCCTAGGCAATTCCAGGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR TCA 72 bp | CCCACGGGGACAGGTGATGTATCACAGTTGGATCTCTaGCAGAGGTACAAGCAGGGCAGAGTGGACACAGTA | + |
|
Preference number: 3 (lower is better) Translates to: PTGTGDVSQLDL*QRYKQGRVDTV Trigger: TACTGTGTCCACTCTGCCCTGCTTGTACCTCTGTCAGAGATCCAACTGTGATACATCACCTGTCCCCGTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR GCA 72 bp | GGGCTCCTCCTCCAGGATGTGTTTCTACCTCCTGGTTaGTCTGATCCTGGAAATGCTAAGAGAGGTGATCCG | + |
|
Preference number: 3 (lower is better) Translates to: GLLLQDVFLPPG*SDPGNAKRGDP Trigger: CGGATCACCTCTCTTAGCATTTCCAGGATCAGAGCAACCAGGAGGTAGAAACACATCCTGGAGGAGGAGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR-3UTR CAA 90 bp | CAAAGGAAGGCTGGAGTTCAGGTCAGGCTCTTCCATCTGAGAGAGGAGAGCAGAAGCCTGGAGATGACCTaGTCATGCACATGCTGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: QRKAGVQVRLFHLREESRSLEMT*SCTCCV Trigger: CACACAGCATGTGCATGACAAGGTCATCTCCAGGCT...TCTGCTCTCCTCTCTCAGATGGAAGAGCCTGACCTGAACTCCAGCCTTCCTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR GCA 72 bp | GGGTACACAGACGGAAAAATGGAAACCCCTTCTGTCTaGGGAGGTGATGGTGACATCAGAGCATCTGAAGGC | + |
|
Preference number: 3 (lower is better) Translates to: GYTDGKMETPSV*GGDGDIRASEG Trigger: GCCTTCAGATGCTCTGATGTCACCATCACCTCCGCAGACAGAAGGGGTTTCCATTTTTCCGTCTGTGTACCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR CCA 72 bp | CCTGGAGATGACCTTGTCATGCACATGCTGTGTGACTaGACGGAAATGAAAGGGCCACCTTCTGATCCAGTG | + |
|
Preference number: 3 (lower is better) Translates to: PGDDLVMHMLCD*TEMKGPPSDPV Trigger: CACTGGATCAGAAGGTGGCCCTTTCATTTCCGTCCAGTCACACAGCATGTGCATGACAAGGTCATCTCCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR CCA 72 bp | AGCAGAATAGAACAGGCTATGGCTATGACTCCCAGGTaGCAGAAGGGCAAAGGAAGGCTGGAGTTCAGGTCA | + |
|
Preference number: 3 (lower is better) Translates to: SRIEQAMAMTPR*QKGKGRLEFRS Trigger: TGACCTGAACTCCAGCCTTCCTTTGCCCTTCTGCCACCTGGGAGTCATAGCCATAGCCTGTTCTATTCTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR TCA 72 bp | TTCAGCGTAAGTGTGGAAAGTTCTGGTGAGGGACTCTaGTCTGCCCTGGAATTGCCTAGGCTCCATATCTGG | + |
|
Preference number: 3 (lower is better) Translates to: FSVSVESSGEGL*SALELPRLHIW Trigger: CCAGATATGGAGCCTAGGCAATTCCAGGGCAGATCAGAGTCCCTCACCAGAACTTTCCACACTTACGCTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR GCA 72 bp | GTTCAGCAAAAGGTCAGAAGGTGTCACGGTAGGAGATaGTGTGGGGTTAAGTCTGCAGACAAGAGGCATGAC | + |
|
Preference number: 3 (lower is better) Translates to: VQQKVRRCHGRR*CGVKSADKRHD Trigger: GTCATGCCTCTTGTCTGCAGACTTAACCCCACAGCATCTCCTACCGTGACACCTTCTGACCTTTTGCTGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR GCA 72 bp | CCTAGCCATGAACTTCCAATCAATAGCCAAGCCATTTaGCTTCCTAGACAGTTGGAGTCCAGTACGTGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: PSHELPINSQAI*LPRQLESSTCW Trigger: CCAGCACGTACTGGACTCCAACTGTCTAGGAAGGCAAATGGCTTGGCTATTGATTGGAAGTTCATGGCTAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR CCA 72 bp | CTGTTGGTTGGTTGGTTGGTTGTGAACCTATTAGTCTaGGGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGT | + |
|
Preference number: 3 (lower is better) Translates to: LLVGWLVVNLLV*GVCVCVCVCVC Trigger: ACACACACACACACACACACACACACAAACACCCCAGACTAATAGGTTCACAACCAACCAACCAACCAACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR CCA 72 bp | CCTGATCTGGTGACTCAGCCTCTAGGGAGCTTACTATaGGGATGCCAATTAAGCTGTCATAAAGACAACTTC | + |
|
Preference number: 3 (lower is better) Translates to: PDLVTQPLGSLL*GCQLSCHKDNF Trigger: GAAGTTGTCTTTATGACAGCTTAATTGGCATCCCCATAGTAAGCTCCCTAGAGGCTGAGTCACCAGATCAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| CDS-3UTR CCA 90 bp | GGCCGTTTGGGCTGGCCTTGCTTCCGCCCCTGGGGCCAGAGGACAGGGAAGAGAGGATTCCGTCCCAGCTaGCACTCCTCCCTGCTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: GRLGWPCFRPWGQRTGKRGFRPS*HSSLLS Trigger: GCTGAGCAGGGAGGAGTGCCAGCTGGGACGGAATCC...TCTCTTCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| CDS-3UTR CCA 90 bp | GGCCGTTTGGGCTGGCCTTGCTTCCGCCCCTGGGGCCAGAGGACAGGGAAGAGATTTCTCGGAAGCCGGTaGGGTCCACCAGGACCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: GRLGWPCFRPWGQRTGKRFLGSR*GPPGPR Trigger: TCTGGGTCCTGGTGGACCCCACCGGCTTCCGAGAAA...TCTCTTCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGGCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| CDS-3UTR TCA 90 bp | CTGGCCGTTTGGGCTGGCCTTGCTTCCGCCCCTGGGGCCAGAGGACAGGGAAGAGGCCAGGATGGCTGCTaGGAGCTCTACCAGGAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: LAVWAGLASAPGARGQGRGQDGC*ELYQED Trigger: ATCTTCCTGGTAGAGCTCTCAGCAGCCATCCTGGCC...TCTTCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGGCCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| CDS-3UTR CCA 90 bp | CAGCCAGCGGGAGCAGGGACCGCTTCGCTCTCCAGCAGATGGTGCTGCAGAGTCTTTCTCGGAAGCCGGTaGGGTCCACCAGGACCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: QPAGAGTASLSSRWCCRVFLGSR*GPPGPR Trigger: TCTGGGTCCTGGTGGACCCCACCGGCTTCCGAGAAA...GACTCTGCAGCACCATCTGCTGGAGAGCGAAGCGGTCCCTGCTCCCGCTGGCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| CDS-3UTR GCA 90 bp | AAGAGAAGGGGCTGGCTTCTGGGCAGTGGTGGGCTGAGTGTCTTCAGGCCAAGGGCTGGCACTCCTCCCTaGTCAGCACCACTCCATCTC | + |
|
Preference number: 4 (lower is better) Translates to: KRRGWLLGSGGLSVFRPRAGTPP*SAPLHL Trigger: GAGATGGAGTGGTGCTGAGCAGGGAGGAGTGCCAGC...CCTTGGCCTGAAGACACTCAGCCCACCACTGCCCAGAAGCCAGCCCCTTCTCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| 3UTR CAA 72 bp | CTGACAGGGCCAAGGGGCTCTGAGGCTGATGAACCTTaGGTCTCAGGAACAGCTGGTCCCAGGCCAGCCCTA | + |
|
Preference number: 4 (lower is better) Translates to: LTGPRGSEADEP*VSGTAGPRPAL Trigger: TAGGGCTGGCCTGGGACCAGCTGTTCCTGAGACCAAAGGTTCATCAGCCTCAGAGCCCCTTGGCCCTGTCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| CDS-3UTR TCA 90 bp | AAGAGAAGGGGCTGGCTTCTGGGCAGTGGTGGGCTGAGTGTCTTCAGGCCAAGGGGCCAGGATGGCTGCTaGGAGCTCTACCAGGAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: KRRGWLLGSGGLSVFRPRGQDGC*ELYQED Trigger: ATCTTCCTGGTAGAGCTCTCAGCAGCCATCCTGGCC...CCTTGGCCTGAAGACACTCAGCCCACCACTGCCCAGAAGCCAGCCCCTTCTCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| CDS-3UTR GCA 90 bp | GGCCGTTTGGGCTGGCCTTGCTTCCGCCCCTGGGGCCAGAGGACAGGGAAGAGAACATCAGATACTTCATaGAGCTCAGACAGTCGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: GRLGWPCFRPWGQRTGKRTSDTS*SSDSRP Trigger: AGGGCGACTGTCTGAGCTGCATGAAGTATCTGATGT...TCTCTTCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| CDS-3UTR GCA 90 bp | CTTCTGGCCGTTTGGGCTGGCCTTGCTTCCGCCCCTGGGGCCAGAGGACAGGGAACATCAGATACTTCATaGAGCTCAGACAGTCGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: LLAVWAGLASAPGARGQGTSDTS*SSDSRP Trigger: AGGGCGACTGTCTGAGCTGCATGAAGTATCTGATGT...TCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGGCCAGAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| CDS-3UTR CCA 90 bp | AAGAGAAGGGGCTGGCTTCTGGGCAGTGGTGGGCTGAGTGTCTTCAGGCCAAGGTCCGACAGCAAGCCTTaGGCACCTCCTCAGTGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: KRRGWLLGSGGLSVFRPRSDSKP*APPQCP Trigger: TGGACACTGAGGAGGTGCCCAAGGCTTGCTGTCGGA...CCTTGGCCTGAAGACACTCAGCCCACCACTGCCCAGAAGCCAGCCCCTTCTCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| 3UTR CAA 72 bp | AAATTAGCTCTATGCTTCTGGCCGTTTGGGCTGGCCTaGCTTCCGCCCCTGGGGCCAGAGGACAGGGAAGAG | + |
|
Preference number: 4 (lower is better) Translates to: KLALCFWPFGLA*LPPLGPEDREE Trigger: CTCTTCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGGCCAGAAGCATAGAGCTAATTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| CDS-3UTR TCA 90 bp | TCTGGCCGTTTGGGCTGGCCTTGCTTCCGCCCCTGGGGCCAGAGGACAGGGAAGAAATGTGATCATGACTaGATTCCAGGTGGCAGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: SGRLGWPCFRPWGQRTGKKCDHD*IPGGRE Trigger: TTCTCTGCCACCTGGAATTCAGTCATGATCACATTT...CTTCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGGCCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| CDS-3UTR TCA 90 bp | GAAGAGAAGGGGCTGGCTTCTGGGCAGTGGTGGGCTGAGTGTCTTCAGGCCAAGAGCCCTGCTTGTTTATaGACGGATTCCGTCCCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: EEKGLASGQWWAECLQAKSPACL*TDSVPA Trigger: AGCTGGGACGGAATCCGTTCATAAACAAGCAGGGCT...CTTGGCCTGAAGACACTCAGCCCACCACTGCCCAGAAGCCAGCCCCTTCTCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| CDS-3UTR TCA 90 bp | GCCGTTTGGGCTGGCCTTGCTTCCGCCCCTGGGGCCAGAGGACAGGGAAGAGAAAGGTTTCGAAGGTGTTaGGGATCACTGTATAACAGC | + |
|
Preference number: 4 (lower is better) Translates to: AVWAGLASAPGARGQGRERFRRC*GSLYNS Trigger: GCTGTTATACAGTGATCCTCAACACCTTCGAAACCT...TTCTCTTCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| CDS-3UTR GCA 90 bp | TGCGGAGGTGATGGTGACATCAGAGCATCTGAAGGCAGGAGGCTGAGTTGGGAGCCACCAGGACCCAGATaGCAACACCTAGCAGGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: CGGDGDIRASEGRRLSWEPPGPR*QHLAGK Trigger: CTTGCCTGCTAGGTGTTGGCATCTGGGTCCTGGTGG...CTCCCAACTCAGCCTCCTGCCTTCAGATGCTCTGATGTCACCATCACCTCCGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR CAA 72 bp | TTCGCTCTCCAGCAGATGGTGCTGCAGAGTCTGTCCTaGTGTTGTGAAAAGCCGGCTCCTTGGGGCCTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: FALQQMVLQSLS*CCEKPAPWGLR Trigger: CCTCAGGCCCCAAGGAGCCGGCTTTTCACAACACAAGGACAGACTCTGCAGCACCATCTGCTGGAGAGCGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| CDS-3UTR TCA 90 bp | CCCTGCCCATCTCTGGAAGCCTGGGCTAGTTCTGGGTGGCAGCCGCTGTGGTTGAGGTTTCGAAGGTGTTaGGGATCACTGTATAACAGC | + |
|
Preference number: 4 (lower is better) Translates to: PCPSLEAWASSGWQPLWLRFRRC*GSLYNS Trigger: GCTGTTATACAGTGATCCTCAACACCTTCGAAACCT...CAACCACAGCGGCTGCCACCCAGAACTAGCCCAGGCTTCCAGAGATGGGCAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| CDS-3UTR GCA 90 bp | TTAAAAATTAGCTCTATGCTTCTGGCCGTTTGGGCTGGCCTTGCTTCCGCCCCTCCACCAGGACCCAGATaGCAACACCTAGCAGGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: LKISSMLLAVWAGLASAPPPGPR*QHLAGK Trigger: CTTGCCTGCTAGGTGTTGGCATCTGGGTCCTGGTGG...AGGGGCGGAAGCAAGGCCAGCCCAAACGGCCAGAAGCATAGAGCTAATTTTTAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| CDS-3UTR CCA 90 bp | TTAAAAATTAGCTCTATGCTTCTGGCCGTTTGGGCTGGCCTTGCTTCCGCCCCTTCCGACAGCAAGCCTTaGGCACCTCCTCAGTGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: LKISSMLLAVWAGLASAPSDSKP*APPQCP Trigger: TGGACACTGAGGAGGTGCCCAAGGCTTGCTGTCGGA...AGGGGCGGAAGCAAGGCCAGCCCAAACGGCCAGAAGCATAGAGCTAATTTTTAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| CDS-3UTR TCA 90 bp | TGCGGAGGTGATGGTGACATCAGAGCATCTGAAGGCAGGAGGCTGAGTTGGGAGAAATGTGATCATGACTaGATTCCAGGTGGCAGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: CGGDGDIRASEGRRLSWEKCDHD*IPGGRE Trigger: TTCTCTGCCACCTGGAATTCAGTCATGATCACATTT...CTCCCAACTCAGCCTCCTGCCTTCAGATGCTCTGATGTCACCATCACCTCCGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR CAA 72 bp | ATCCATCCGTATGTGGAGGGATGCAGGGGTGAATTCTaGGCAGGGACCTTGAAGAACACATTCAAGCCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: IHPYVEGCRGEF*AGTLKNTFKPQ Trigger: CTGAGGCTTGAATGTGTTCTTCAAGGTCCCTGCCAAGAATTCACCCCTGCATCCCTCCACATACGGATGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| 3UTR CAA 72 bp | TGGTTGGTTGGTTGTGAACCTATTAGTCTGGGGTGTTaGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: WLVGCEPISLGC*FVCVCVCVCVC Trigger: ACACACACACACACACACACACACACACACAAACAAACACCCCAGACTAATAGGTTCACAACCAACCAACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| CDS-3UTR CAA 90 bp | GGCCGTTTGGGCTGGCCTTGCTTCCGCCCCTGGGGCCAGAGGACAGGGAAGAGAAACACGGAGGCCAGCTaGAAGTCTTCAGGTCCGTTG | + |
|
Preference number: 5 (lower is better) Translates to: GRLGWPCFRPWGQRTGKRNTEAS*KSSGPL Trigger: CAACGGACCTGAAGACTTCAAGCTGGCCTCCGTGTT...TCTCTTCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| CDS-3UTR CAA 90 bp | GCCGTTTGGGCTGGCCTTGCTTCCGCCCCTGGGGCCAGAGGACAGGGAAGAGAAAAGTCTTCAGGTCCGTaGACCCCACAGCAGCCAAAT | + |
|
Preference number: 5 (lower is better) Translates to: AVWAGLASAPGARGQGREKSSGP*TPQQPN Trigger: ATTTGGCTGCTGTGGGGTCAACGGACCTGAAGACTT...TTCTCTTCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| CDS-3UTR CAA 90 bp | CAGCCAGCGGGAGCAGGGACCGCTTCGCTCTCCAGCAGATGGTGCTGCAGAGTCAAGTCTTCAGGTCCGTaGACCCCACAGCAGCCAAAT | + |
|
Preference number: 5 (lower is better) Translates to: QPAGAGTASLSSRWCCRVKSSGP*TPQQPN Trigger: ATTTGGCTGCTGTGGGGTCAACGGACCTGAAGACTT...GACTCTGCAGCACCATCTGCTGGAGAGCGAAGCGGTCCCTGCTCCCGCTGGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| CDS-3UTR CAA 90 bp | GCCGTTTGGGCTGGCCTTGCTTCCGCCCCTGGGGCCAGAGGACAGGGAAGAGAACGTATCGTTATCGCCTaGGTAGTGCTTGGTAAGCTC | + |
|
Preference number: 5 (lower is better) Translates to: AVWAGLASAPGARGQGRERIVIA*VVLGKL Trigger: GAGCTTACCAAGCACTACCAAGGCGATAACGATACG...TTCTCTTCCCTGTCCTCTGGCCCCAGGGGCGGAAGCAAGGCCAGCCCAAACGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
||
| CDS-3UTR CAA 90 bp | CCCTGCCCATCTCTGGAAGCCTGGGCTAGTTCTGGGTGGCAGCCGCTGTGGTTGCGTATCGTTATCGCCTaGGTAGTGCTTGGTAAGCTC | + |
|
Preference number: 5 (lower is better) Translates to: PCPSLEAWASSGWQPLWLRIVIA*VVLGKL Trigger: GAGCTTACCAAGCACTACCAAGGCGATAACGATACG...CAACCACAGCGGCTGCCACCCAGAACTAGCCCAGGCTTCCAGAGATGGGCAGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111265.9 |
||
| CDS CAA 72 bp | CCATCTCGAGTCTGGGGTTCCCTCCGACAGCAAGCCTaGGGCACCTCCTCAGTGTCCAGCGTCAGCAGCCGA | + |
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Preference number: 6 (lower is better) Translates to: PSRVWGSLRQQA*GTSSVSSVSSR Trigger: TCGGCTGCTGACGCTGGACACTGAGGAGGTGCCCAAGGCTTGCTGTCGGAGGGAACCCCAGACTCGAGATGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
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| CDS CAA 90 bp | AGCACCACTCCATCTCGAGTCTGGGGTTCCCTCCGACAGCAAGCCTaGGGCACCTCCTCAGTGTCCAGCGTCAGCAGCCGAAACACGGAG | + |
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Preference number: 6 (lower is better) Translates to: STTPSRVWGSLRQQA*GTSSVSSVSSRNTE Trigger: CTCCGTGTTTCGGCTGCTGACGCTGGACACTGAGGAGGTGCCCAAGGCTTGCTGTCGGAGGGAACCCCAGACTCGAGATGGAGTGGTGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
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| CDS CAA 72 bp | GTGTCCAGCGTCAGCAGCCGAAACACGGAGGCCAGCTaGAAGTCTTCAGGTCCGTTGACCCCACAGCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: VSSVSSRNTEAS*KSSGPLTPQQP Trigger: TGGCTGCTGTGGGGTCAACGGACCTGAAGACTTCAAGCTGGCCTCCGTGTTTCGGCTGCTGACGCTGGACAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
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| CDS GCA 72 bp | TTTCTCGGAAGCCGGTGGGGTCCACCAGGACCCAGATaGCAACACCTAGCAGGCAAGCGCCTCCCAGAAAAA | + |
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Preference number: 6 (lower is better) Translates to: FLGSRWGPPGPR*QHLAGKRLPEK Trigger: TTTTTCTGGGAGGCGCTTGCCTGCTAGGTGTTGGCATCTGGGTCCTGGTGGACCCCACCGGCTTCCGAGAAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
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| CDS CAA 90 bp | ACCTCCTCAGTGTCCAGCGTCAGCAGCCGAAACACGGAGGCCAGCTaGAAGTCTTCAGGTCCGTTGACCCCACAGCAGCCAAATGTGATC | + |
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Preference number: 6 (lower is better) Translates to: TSSVSSVSSRNTEAS*KSSGPLTPQQPNVI Trigger: GATCACATTTGGCTGCTGTGGGGTCAACGGACCTGAAGACTTCAAGCTGGCCTCCGTGTTTCGGCTGCTGACGCTGGACACTGAGGAGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
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| CDS CAA 72 bp | CGAAACACGGAGGCCAGCTTGAAGTCTTCAGGTCCGTaGACCCCACAGCAGCCAAATGTGATCATGACTGAA | + |
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Preference number: 6 (lower is better) Translates to: RNTEASLKSSGP*TPQQPNVIMTE Trigger: TTCAGTCATGATCACATTTGGCTGCTGTGGGGTCAACGGACCTGAAGACTTCAAGCTGGCCTCCGTGTTTCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
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| CDS TCA 72 bp | TCCGTTGACCCCACAGCAGCCAAATGTGATCATGACTaGATTCCAGGTGGCAGAGAAAACATCCGTATCGTT | + |
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Preference number: 6 (lower is better) Translates to: SVDPTAAKCDHD*IPGGRENIRIV Trigger: AACGATACGGATGTTTTCTCTGCCACCTGGAATTCAGTCATGATCACATTTGGCTGCTGTGGGGTCAACGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028646.4 ENSMUST00000111265.9 |
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