Pregenerated sensors for TSPAN17 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025875Ensembl transcript IDs: ENSMUST00000026993.14, ENSMUST00000099503.10, ENSMUST00000130568.9, ENSMUST00000131692.9, ENSMUST00000145574.2, ENSMUST00000163796.8, ENSMUST00000163915.8, ENSMUST00000171859.8
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGACGTCCCACAGGCCTTGCCATTGTGAGCGAGGCAGAGTGTCCTaGGAGGCCCCCACTAGAGCCCCACGGGCCAGGCACATGGCCATC | + |
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Preference number: 1 (lower is better) Translates to: QTSHRPCHCERGRVS*EAPTRAPRARHMAI Trigger: GATGGCCATGTGCCTGGCCCGTGGGGCTCTAGTGGGGGCCTCCCAGGACACTCTGCCTCGCTCACAATGGCAAGGCCTGTGGGACGTCTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| 3UTR-3UTR CCA 90 bp | CAGCCCCAGTCTAGTCCCCAATGGTTTCCTCAGTGGGTAATGAGCACCAAGGTCCACGGGCCAGGCACATaGCCATCACCCCTGGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: QPQSSPQWFPQWVMSTKVHGPGT*PSPLAA Trigger: GGCTGCCAGGGGTGATGGCCATGTGCCTGGCCCGTG...GACCTTGGTGCTCATTACCCACTGAGGAAACCATTGGGGACTAGACTGGGGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| 3UTR-3UTR GCA 90 bp | CCCATTTCAGAGGCTGTGACACTGAGGCCAAGACAAGCTCCAGGCAGGCTCAAAACCAGGGGACACAGGTaGCTGCCCTACCCTCCATCT | + |
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Preference number: 2 (lower is better) Translates to: PISEAVTLRPRQAPGRLKTRGHR*LPYPPS Trigger: AGATGGAGGGTAGGGCAGGCACCTGTGTCCCCTGGT...TTTGAGCCTGCCTGGAGCTTGTCTTGGCCTCAGTGTCACAGCCTCTGAAATGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| 3UTR CCA 72 bp | CACAGGCCTTGCCATTGTGAGCGAGGCAGAGTGTCCTaGGAGGCCCCCACTAGAGCCCCACGGGCCAGGCAC | + |
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Preference number: 3 (lower is better) Translates to: HRPCHCERGRVS*EAPTRAPRARH Trigger: GTGCCTGGCCCGTGGGGCTCTAGTGGGGGCCTCCCAGGACACTCTGCCTCGCTCACAATGGCAAGGCCTGTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| 3UTR TCA 72 bp | GGCCAAGACAAGCTCCAGGCAGGCTCAAAGTCATGGTaGGTATGGAGAGGTCTGAGACAGCAGGCTCCTAAG | + |
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Preference number: 3 (lower is better) Translates to: GQDKLQAGSKSW*VWRGLRQQAPK Trigger: CTTAGGAGCCTGCTGTCTCAGACCTCTCCATACTCACCATGACTTTGAGCCTGCCTGGAGCTTGTCTTGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| 3UTR CCA 72 bp | GAGCTCTGTGGCAAACAGCCCCAGTCTAGTCCCCAATaGTTTCCTCAGTGGGTAATGAGCACCAAGGTCACA | + |
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Preference number: 3 (lower is better) Translates to: ELCGKQPQSSPQ*FPQWVMSTKVT Trigger: TGTGACCTTGGTGCTCATTACCCACTGAGGAAACCATTGGGGACTAGACTGGGGCTGTTTGCCACAGAGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| CDS-3UTR TCA 90 bp | AGCGAGGCAGAGTGTCCTGGGAGGCCCCCACTAGAGCCCCACGGGCCAGGCACATGGCCTTCACCGCCTTaGTGTCACTCACGAGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: SEAECPGRPPLEPHGPGTWPSPP*CHSRGS Trigger: AGAACCTCGTGAGTGACATCAAGGCGGTGAAGGCCA...TGTGCCTGGCCCGTGGGGCTCTAGTGGGGGCCTCCCAGGACACTCTGCCTCGCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| CDS-3UTR GCA 90 bp | GGGCCACCACCTCACAGCAGCAGGGTAGAGACTCCAGGTGCACTTACGAGTGTGCCCGGAGGGCCCCAATaGAGCCGGCGAAGCCCAACA | + |
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Preference number: 4 (lower is better) Translates to: GPPPHSSRVETPGALTSVPGGPQ*SRRSPT Trigger: TGTTGGGCTTCGCCGGCTGCATTGGGGCCCTCCGGG...CACACTCGTAAGTGCACCTGGAGTCTCTACCCTGCTGCTGTGAGGTGGTGGCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| CDS-3UTR CCA 90 bp | AGAGTGTCCTGGGAGGCCCCCACTAGAGCCCCACGGGCCAGGCACATGGCCATCGGCCCACACAGCCTTTaGTGTAGATGGAGCCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: RVSWEAPTRAPRARHMAIGPHSL*CRWSPA Trigger: AGCAGGGCTCCATCTACACCAAAGGCTGTGTGGGCC...GATGGCCATGTGCCTGGCCCGTGGGGCTCTAGTGGGGGCCTCCCAGGACACTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| CDS-3UTR CCA 90 bp | AGCGAGGCAGAGTGTCCTGGGAGGCCCCCACTAGAGCCCCACGGGCCAGGCACAACAGCGCTCACGGCTTaGGTTCAAGTCAGTGCAGTT | + |
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Preference number: 4 (lower is better) Translates to: SEAECPGRPPLEPHGPGTTALTA*VQVSAV Trigger: AACTGCACTGACTTGAACCCAAGCCGTGAGCGCTGT...TGTGCCTGGCCCGTGGGGCTCTAGTGGGGGCCTCCCAGGACACTCTGCCTCGCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| CDS-3UTR CCA 90 bp | CACAGGTACACACCCCCGACACAGAGCTCTGTGGCAAACAGCCCCAGTCTAGTCAGGCCCAGAGGCCAATaGCCAGGAACAGGGCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: HRYTPPTQSSVANSPSLVRPRGQ*PGTGLP Trigger: TGGGAGCCCTGTTCCTGGCCATTGGCCTCTGGGCCT...GACTAGACTGGGGCTGTTTGCCACAGAGCTCTGTGTCGGGGGTGTGTACCTGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| CDS-3UTR CCA 90 bp | GGACCCATTTCAGAGGCTGTGACACTGAGGCCAAGACAAGCTCCAGGCAGGCTCCCGACCTCAGGGTCCTaGAATTGCTGGTGCTTGCCG | + |
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Preference number: 4 (lower is better) Translates to: GPISEAVTLRPRQAPGRLPTSGS*NCWCLP Trigger: CGGCAAGCACCAGCAATTCCAGGACCCTGAGGTCGG...GAGCCTGCCTGGAGCTTGTCTTGGCCTCAGTGTCACAGCCTCTGAAATGGGTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| CDS-3UTR TCA 90 bp | GGACCCATTTCAGAGGCTGTGACACTGAGGCCAAGACAAGCTCCAGGCAGGCTCCTCGGATCCAATCCTTaGAGACGAAGGCCAGGATCC | + |
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Preference number: 4 (lower is better) Translates to: GPISEAVTLRPRQAPGRLLGSNP*RRRPGS Trigger: GGATCCTGGCCTTCGTCTTCAAGGATTGGATCCGAG...GAGCCTGCCTGGAGCTTGTCTTGGCCTCAGTGTCACAGCCTCTGAAATGGGTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026993.14 ENSMUST00000145574.2 |
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| CDS-3UTR CCA 90 bp | CCCATTTCAGAGGCTGTGACACTGAGGCCAAGACAAGCTCCAGGCAGGCTCAAAGGCCCACACAGCCTTTaGTGTAGATGGAGCCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: PISEAVTLRPRQAPGRLKGPHSL*CRWSPA Trigger: AGCAGGGCTCCATCTACACCAAAGGCTGTGTGGGCC...TTTGAGCCTGCCTGGAGCTTGTCTTGGCCTCAGTGTCACAGCCTCTGAAATGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026993.14 ENSMUST00000145574.2 |
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| CDS-3UTR CCA 90 bp | TCTTGGACCCATTTCAGAGGCTGTGACACTGAGGCCAAGACAAGCTCCAGGCAGACAGCGCTCACGGCTTaGGTTCAAGTCAGTGCAGTT | + |
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Preference number: 4 (lower is better) Translates to: SWTHFRGCDTEAKTSSRQTALTA*VQVSAV Trigger: AACTGCACTGACTTGAACCCAAGCCGTGAGCGCTGT...CTGCCTGGAGCTTGTCTTGGCCTCAGTGTCACAGCCTCTGAAATGGGTCCAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026993.14 ENSMUST00000145574.2 |
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| CDS-3UTR CCA 90 bp | GTGATCCTGAGAGGCAAGCGAGAGAGAGAATTCTTGGACCCATTTCAGAGGCTGTCAGCGCCGAGATGTTaGAGAGAACGCCCTTCTCAC | + |
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Preference number: 4 (lower is better) Translates to: VILRGKREREFLDPFQRLSAPRC*RERPSH Trigger: GTGAGAAGGGCGTTCTCTCCAACATCTCGGCGCTGA...CAGCCTCTGAAATGGGTCCAAGAATTCTCTCTCTCGCTTGCCTCTCAGGATCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| CDS-3UTR TCA 90 bp | AGTGTGATCCTGAGAGGCAAGCGAGAGAGAGAATTCTTGGACCCATTTCAGAGGTGGCCTTCACCGCCTTaGTGTCACTCACGAGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: SVILRGKREREFLDPFQRWPSPP*CHSRGS Trigger: AGAACCTCGTGAGTGACATCAAGGCGGTGAAGGCCA...CCTCTGAAATGGGTCCAAGAATTCTCTCTCTCGCTTGCCTCTCAGGATCACACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026993.14 ENSMUST00000145574.2 |
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| CDS-3UTR TCA 90 bp | GAGTCGTTTGTAGCCATCGCCAAGTGTGATCCTGAGAGGCAAGCGAGAGAGAGAACACAGAGAAGAACTTaGGCAGGAAGGTGTTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: ESFVAIAKCDPERQARERTQRRT*AGRCFP Trigger: GGGAAAACACCTTCCTGCTCAAGTTCTTCTCTGTGT...TCTCTCTCTCGCTTGCCTCTCAGGATCACACTTGGCGATGGCTACAAACGACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| CDS-3UTR TCA 90 bp | AAGTGTGATCCTGAGAGGCAAGCGAGAGAGAGAATTCTTGGACCCATTTCAGAGAGCCACACTGGGTATTaGGGACATCTTCCGCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: KCDPERQARERILGPISESHTGY*GHLPLG Trigger: ACCCAGCGGAAGATGTCCTCAATACCCAGTGTGGCT...CTCTGAAATGGGTCCAAGAATTCTCTCTCTCGCTTGCCTCTCAGGATCACACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026993.14 ENSMUST00000145574.2 |
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| CDS-3UTR CCA 90 bp | AAGTGTGATCCTGAGAGGCAAGCGAGAGAGAGAATTCTTGGACCCATTTCAGAGTCACTCACGAGGTTCTaGGCCAAGCAGAGGCCAAAT | + |
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Preference number: 4 (lower is better) Translates to: KCDPERQARERILGPISESLTRF*AKQRPN Trigger: ATTTGGCCTCTGCTTGGCCCAGAACCTCGTGAGTGA...CTCTGAAATGGGTCCAAGAATTCTCTCTCTCGCTTGCCTCTCAGGATCACACTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026993.14 ENSMUST00000145574.2 |
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| CDS-3UTR CCA 90 bp | TTTATTGAGTCGTTTGTAGCCATCGCCAAGTGTGATCCTGAGAGGCAAGCGAGATCACTCACGAGGTTCTaGGCCAAGCAGAGGCCAAAT | + |
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Preference number: 4 (lower is better) Translates to: FIESFVAIAKCDPERQARSLTRF*AKQRPN Trigger: ATTTGGCCTCTGCTTGGCCCAGAACCTCGTGAGTGA...TCTCGCTTGCCTCTCAGGATCACACTTGGCGATGGCTACAAACGACTCAATAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026993.14 ENSMUST00000145574.2 |
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| CDS-3UTR CAA 90 bp | AGCGAGGCAGAGTGTCCTGGGAGGCCCCCACTAGAGCCCCACGGGCCAGGCACATTGAGGTTCCAGTCATaGGGCCCTCGGGCACCACAG | + |
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Preference number: 5 (lower is better) Translates to: SEAECPGRPPLEPHGPGTLRFQS*GPRAPQ Trigger: CTGTGGTGCCCGAGGGCCCAATGACTGGAACCTCAA...TGTGCCTGGCCCGTGGGGCTCTAGTGGGGGCCTCCCAGGACACTCTGCCTCGCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| CDS-3UTR CAA 90 bp | AGAGTGTCCTGGGAGGCCCCCACTAGAGCCCCACGGGCCAGGCACATGGCCATCGCCACCACGATCAGGTaGTCTTGTAGCCACTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: RVSWEAPTRAPRARHMAIATTIR*SCSHFS Trigger: TGAGAAGTGGCTACAAGACAACCTGATCGTGGTGGC...GATGGCCATGTGCCTGGCCCGTGGGGCTCTAGTGGGGGCCTCCCAGGACACTCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| CDS-3UTR CAA 90 bp | GGGCCACCACCTCACAGCAGCAGGGTAGAGACTCCAGGTGCACTTACGAGTGTGTCTCGGATCCAATCCTaGAAGACGAAGGCCAGGATC | + |
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Preference number: 5 (lower is better) Translates to: GPPPHSSRVETPGALTSVSRIQS*KTKARI Trigger: GATCCTGGCCTTCGTCTTCAAGGATTGGATCCGAGA...CACACTCGTAAGTGCACCTGGAGTCTCTACCCTGCTGCTGTGAGGTGGTGGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| CDS-3UTR CAA 90 bp | TCTTGGACCCATTTCAGAGGCTGTGACACTGAGGCCAAGACAAGCTCCAGGCAGTTGAGGTTCCAGTCATaGGGCCCTCGGGCACCACAG | + |
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Preference number: 5 (lower is better) Translates to: SWTHFRGCDTEAKTSSRQLRFQS*GPRAPQ Trigger: CTGTGGTGCCCGAGGGCCCAATGACTGGAACCTCAA...CTGCCTGGAGCTTGTCTTGGCCTCAGTGTCACAGCCTCTGAAATGGGTCCAAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026993.14 ENSMUST00000145574.2 |
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| CDS-3UTR CAA 90 bp | CTTGGACCCATTTCAGAGGCTGTGACACTGAGGCCAAGACAAGCTCCAGGCAGGCACAGCGCTCACGGCTaGGGTTCAAGTCAGTGCAGT | + |
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Preference number: 5 (lower is better) Translates to: LGPISEAVTLRPRQAPGRHSAHG*GSSQCS Trigger: ACTGCACTGACTTGAACCCAAGCCGTGAGCGCTGTG...CCTGCCTGGAGCTTGTCTTGGCCTCAGTGTCACAGCCTCTGAAATGGGTCCAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026993.14 ENSMUST00000145574.2 |
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| CDS-3UTR CAA 90 bp | AAAGTGTTGTTTATTGAGTCGTTTGTAGCCATCGCCAAGTGTGATCCTGAGAGGGTCAGCGCCGAGATGTaGGAGAGAACGCCCTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: KVLFIESFVAIAKCDPERVSAEM*ERTPFS Trigger: TGAGAAGGGCGTTCTCTCCAACATCTCGGCGCTGAC...CCTCTCAGGATCACACTTGGCGATGGCTACAAACGACTCAATAAACAACACTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| CDS-3UTR CAA 90 bp | AAGTGTGATCCTGAGAGGCAAGCGAGAGAGAGAATTCTTGGACCCATTTCAGAGTCTCGGATCCAATCCTaGAAGACGAAGGCCAGGATC | + |
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Preference number: 5 (lower is better) Translates to: KCDPERQARERILGPISESRIQS*KTKARI Trigger: GATCCTGGCCTTCGTCTTCAAGGATTGGATCCGAGA...CTCTGAAATGGGTCCAAGAATTCTCTCTCTCGCTTGCCTCTCAGGATCACACTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026993.14 ENSMUST00000145574.2 |
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| CDS-3UTR CAA 90 bp | AAAGTGTTGTTTATTGAGTCGTTTGTAGCCATCGCCAAGTGTGATCCTGAGAGGCACAGCGCTCACGGCTaGGGTTCAAGTCAGTGCAGT | + |
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Preference number: 5 (lower is better) Translates to: KVLFIESFVAIAKCDPERHSAHG*GSSQCS Trigger: ACTGCACTGACTTGAACCCAAGCCGTGAGCGCTGTG...CCTCTCAGGATCACACTTGGCGATGGCTACAAACGACTCAATAAACAACACTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026993.14 ENSMUST00000145574.2 |
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| CDS-3UTR CAA 90 bp | AAGTGTGATCCTGAGAGGCAAGCGAGAGAGAGAATTCTTGGACCCATTTCAGAGGCCACCACGATCAGGTaGTCTTGTAGCCACTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: KCDPERQARERILGPISEATTIR*SCSHFS Trigger: TGAGAAGTGGCTACAAGACAACCTGATCGTGGTGGC...CTCTGAAATGGGTCCAAGAATTCTCTCTCTCGCTTGCCTCTCAGGATCACACTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026993.14 ENSMUST00000145574.2 |
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| CDS-3UTR CAA 90 bp | GCTGTGACACTGAGGCCAAGACAAGCTCCAGGCAGGCTCAAAGTCATGGTGAGTGCTTTGACATTGTTGTaGATGAAGAGATTAAGTTGG | + |
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Preference number: 5 (lower is better) Translates to: AVTLRPRQAPGRLKVMVSALTLL*MKRLSW Trigger: CCAACTTAATCTCTTCATCAACAACAATGTCAAAGC...ACTCACCATGACTTTGAGCCTGCCTGGAGCTTGTCTTGGCCTCAGTGTCACAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026993.14 |
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| CDS-3UTR CAA 90 bp | GTGATCCTGAGAGGCAAGCGAGAGAGAGAATTCTTGGACCCATTTCAGAGGCTGGCTTTGACATTGTTGTaGATGAAGAGATTAAGTTGG | + |
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Preference number: 5 (lower is better) Translates to: VILRGKREREFLDPFQRLALTLL*MKRLSW Trigger: CCAACTTAATCTCTTCATCAACAACAATGTCAAAGC...CAGCCTCTGAAATGGGTCCAAGAATTCTCTCTCTCGCTTGCCTCTCAGGATCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026993.14 ENSMUST00000145574.2 |
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| CDS CCA 72 bp | GGTCAAGACCGCCCAGATCTGTCAGCGCCGAGATGTTaGAGAGAACGCCCTTCTCACCCCAGGCCCAGAGGC | + |
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Preference number: 6 (lower is better) Translates to: GQDRPDLSAPRC*RERPSHPRPRG Trigger: GCCTCTGGGCCTGGGGTGAGAAGGGCGTTCTCTCCAACATCTCGGCGCTGACAGATCTGGGCGGTCTTGACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000026993.14 ENSMUST00000099503.10 ENSMUST00000131692.9 ENSMUST00000171859.8 |
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| CDS CAA 72 bp | GGGTCAAGACCGCCCAGATCTGTCAGCGCCGAGATGTaGGAGAGAACGCCCTTCTCACCCCAGGCCCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: GSRPPRSVSAEM*ERTPFSPQAQR Trigger: CCTCTGGGCCTGGGGTGAGAAGGGCGTTCTCTCCAACATCTCGGCGCTGACAGATCTGGGCGGTCTTGACCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000026993.14 ENSMUST00000099503.10 ENSMUST00000131692.9 ENSMUST00000171859.8 |
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| CDS CCA 72 bp | ACAGCAGGAAAAGGGCACCCCACAGCGCTCACGGCTTaGGTTCAAGTCAGTGCAGTTGAAGTAGATATTGAG | + |
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Preference number: 6 (lower is better) Translates to: TAGKGHPTALTA*VQVSAVEVDIE Trigger: CTCAATATCTACTTCAACTGCACTGACTTGAACCCAAGCCGTGAGCGCTGTGGGGTGCCCTTTTCCTGCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000026993.14 ENSMUST00000099503.10 ENSMUST00000130568.9 ENSMUST00000131692.9 ENSMUST00000145574.2 ENSMUST00000163796.8 |
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| CDS CAA 90 bp | ATCATCCCGGTAGGCTTTGACATTGTTGTTGATGAAGAGATTAAGTaGGTCTCGGATCCAATCCTTGAAGACGAAGGCCAGGATCCCCGC | + |
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Preference number: 6 (lower is better) Translates to: IIPVGFDIVVDEEIK*VSDPILEDEGQDPR Trigger: GCGGGGATCCTGGCCTTCGTCTTCAAGGATTGGATCCGAGACCAACTTAATCTCTTCATCAACAACAATGTCAAAGCCTACCGGGATGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000026993.14 ENSMUST00000099503.10 ENSMUST00000130568.9 ENSMUST00000131692.9 ENSMUST00000145574.2 ENSMUST00000163796.8 ENSMUST00000163915.8 |
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| CDS CAA 72 bp | GTAGGCTTTGACATTGTTGTTGATGAAGAGATTAAGTaGGTCTCGGATCCAATCCTTGAAGACGAAGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: VGFDIVVDEEIK*VSDPILEDEGQ Trigger: CTGGCCTTCGTCTTCAAGGATTGGATCCGAGACCAACTTAATCTCTTCATCAACAACAATGTCAAAGCCTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000026993.14 ENSMUST00000099503.10 ENSMUST00000130568.9 ENSMUST00000131692.9 ENSMUST00000145574.2 ENSMUST00000163796.8 ENSMUST00000163915.8 |
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| CDS CAA 72 bp | GTAGGCTTTGACATTGTTGTTGATGAAGAGATTAAGTaGGTCTCGGATCCAATCGAACTTGAGCAGGAAGGT | + |
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Preference number: 6 (lower is better) Translates to: VGFDIVVDEEIK*VSDPIELEQEG Trigger: ACCTTCCTGCTCAAGTTCGATTGGATCCGAGACCAACTTAATCTCTTCATCAACAACAATGTCAAAGCCTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171859.8 |
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