RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TSPAN15 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037031

Ensembl transcript IDs: ENSMUST00000047883.11

Found 98 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGTGGCCATCAGACACTATACGCAGGTACATACACCCTGGGCTTTaGTCAGCGCCGTGGGTGGGCAGAGGAGCTGCAGCTGGTCCTGTC +
Preference number: 1 (lower is better)
Translates to: EWPSDTIRRYIHPGL*SAPWVGRGAAAGPV
Trigger: GACAGGACCAGCTGCAGCTCCTCTGCCCACCCACGGCGCTGACCAAAGCCCAGGGTGTATGTACCTGCGTATAGTGTCTGATGGCCACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CCA 90 bp CTAGGAGGAGTGGCCATCAGACACTATACGCAGGTACATACACCCTaGGCTTTGGTCAGCGCCGTGGGTGGGCAGAGGAGCTGCAGCTGG +
Preference number: 1 (lower is better)
Translates to: LGGVAIRHYTQVHTP*ALVSAVGGQRSCSW
Trigger: CCAGCTGCAGCTCCTCTGCCCACCCACGGCGCTGACCAAAGCCCAGGGTGTATGTACCTGCGTATAGTGTCTGATGGCCACTCCTCCTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR GCA 90 bp AGCTGCAGCTGGTCCTGTCCAGCTTGTGTAGTCTTAGATGCACTTTaGAGTACAGTCCGGCTGGGAGCTGCTGTGCCGGGCCAGGATAGC +
Preference number: 1 (lower is better)
Translates to: SCSWSCPACVVLDAL*STVRLGAAVPGQDS
Trigger: GCTATCCTGGCCCGGCACAGCAGCTCCCAGCCGGACTGTACTGCAAAGTGCATCTAAGACTACACAAGCTGGACAGGACCAGCTGCAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR GCA 90 bp CATACACCCTGGGCTTTGGTCAGCGCCGTGGGTGGGCAGAGGAGCTaGAGCTGGTCCTGTCCAGCTTGTGTAGTCTTAGATGCACTTTGC +
Preference number: 1 (lower is better)
Translates to: HTPWALVSAVGGQRS*SWSCPACVVLDALC
Trigger: GCAAAGTGCATCTAAGACTACACAAGCTGGACAGGACCAGCTGCAGCTCCTCTGCCCACCCACGGCGCTGACCAAAGCCCAGGGTGTATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CCA 90 bp CTATACGCAGGTACATACACCCTGGGCTTTGGTCAGCGCCGTGGGTaGGCAGAGGAGCTGCAGCTGGTCCTGTCCAGCTTGTGTAGTCTT +
Preference number: 1 (lower is better)
Translates to: LYAGTYTLGFGQRRG*AEELQLVLSSLCSL
Trigger: AAGACTACACAAGCTGGACAGGACCAGCTGCAGCTCCTCTGCCCACCCACGGCGCTGACCAAAGCCCAGGGTGTATGTACCTGCGTATAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR TCA 90 bp GATATCCTCAGCTACACAGTGAGCTGGAGGCCAGCCTGGGCTACGTaGGACCCCGTCTCAACAACCAAAGGGGGATTAGTTAGGGAGCAC +
Preference number: 1 (lower is better)
Translates to: DILSYTVSWRPAWAT*DPVSTTKGGLVREH
Trigger: GTGCTCCCTAACTAATCCCCCTTTGGTTGTTGAGACGGGGTCTCACGTAGCCCAGGCTGGCCTCCAGCTCACTGTGTAGCTGAGGATATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR TCA 90 bp AGCAGCCCAGGAATCAGGAGCTTAAGGATATCCTCAGCTACACAGTaGGCTGGAGGCCAGCCTGGGCTACGTGAGACCCCGTCTCAACAA +
Preference number: 1 (lower is better)
Translates to: SSPGIRSLRISSATQ*AGGQPGLRETPSQQ
Trigger: TTGTTGAGACGGGGTCTCACGTAGCCCAGGCTGGCCTCCAGCTCACTGTGTAGCTGAGGATATCCTTAAGCTCCTGATTCCTGGGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR TCA 90 bp ATCCCTGATGGCAGAGAGAGGGAGAATGACAGAGTCACCAGCCTCTaGTCCCCTCTGAGTGCCCCAGCCATACTGCTATACTACAGGATT +
Preference number: 1 (lower is better)
Translates to: IPDGRERENDRVTSL*SPLSAPAILLYYRI
Trigger: AATCCTGTAGTATAGCAGTATGGCTGGGGCACTCAGAGGGGATCAGAGGCTGGTGACTCTGTCATTCTCCCTCTCTCTGCCATCAGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CCA 90 bp GGGTGGGTGTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGAATTGAACTCAGGACCTCGGAAAGAGCAGTCAGTGCTCTTA +
Preference number: 1 (lower is better)
Translates to: GWVSITDGCEPPCGC*ELNSGPRKEQSVLL
Trigger: TAAGAGCACTGACTGCTCTTTCCGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGACACCCACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CCA 90 bp TCACAATCCTCCTGCCTCCACCCCCTGAGTGCTGGATTACAGGCATaGATCAGCCCCCATGCTCAGCAAATTACTATTTACTTGTGCTGT +
Preference number: 1 (lower is better)
Translates to: SQSSCLHPLSAGLQA*ISPHAQQITIYLCC
Trigger: ACAGCACAAGTAAATAGTAATTTGCTGAGCATGGGGGCTGATCCATGCCTGTAATCCAGCACTCAGGGGGTGGAGGCAGGAGGATTGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CCA 90 bp GTATATGTGTACTCTGTAGCTGTCTTCAGACACACCAGAACAGGGTaGGTGTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGG +
Preference number: 1 (lower is better)
Translates to: VYVYSVAVFRHTRTG*VSITDGCEPPCGCW
Trigger: CCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGACACCCACCCTGTTCTGGTGTGTCTGAAGACAGCTACAGAGTACACATATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR TCA 90 bp TACAGAGCCCTACCTCGGTTACTTTCTATAACACGGGTAGACTTGTaGTACCATTCTCCTACAGGAGCCCTGGACTCAGCTACTTCTCCA +
Preference number: 1 (lower is better)
Translates to: YRALPRLLSITRVDL*YHSPTGALDSATSP
Trigger: TGGAGAAGTAGCTGAGTCCAGGGCTCCTGTAGGAGAATGGTATCACAAGTCTACCCGTGTTATAGAAAGTAACCGAGGTAGGGCTCTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR GCA 90 bp ATATTTAATTATTTTATTTATGAATACACTGTCGCTGTCTTCAGATaGACCAGAAGAAGGCATCGGATCCTGTTACAGATGGTTGTGAGC +
Preference number: 1 (lower is better)
Translates to: IFNYFIYEYTVAVFR*TRRRHRILLQMVVS
Trigger: GCTCACAACCATCTGTAACAGGATCCGATGCCTTCTTCTGGTGCATCTGAAGACAGCGACAGTGTATTCATAAATAAAATAATTAAATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CAA 90 bp CAGCGCCGTGGGTGGGCAGAGGAGCTGCAGCTGGTCCTGTCCAGCTaGTGTAGTCTTAGATGCACTTTGCAGTACAGTCCGGCTGGGAGC +
Preference number: 2 (lower is better)
Translates to: QRRGWAEELQLVLSS*CSLRCTLQYSPAGS
Trigger: GCTCCCAGCCGGACTGTACTGCAAAGTGCATCTAAGACTACACAAGCTGGACAGGACCAGCTGCAGCTCCTCTGCCCACCCACGGCGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CAA 90 bp GGAGTGGCCATCAGACACTATACGCAGGTACATACACCCTGGGCTTaGGTCAGCGCCGTGGGTGGGCAGAGGAGCTGCAGCTGGTCCTGT +
Preference number: 2 (lower is better)
Translates to: GVAIRHYTQVHTPWA*VSAVGGQRSCSWSC
Trigger: ACAGGACCAGCTGCAGCTCCTCTGCCCACCCACGGCGCTGACCAAAGCCCAGGGTGTATGTACCTGCGTATAGTGTCTGATGGCCACTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR TCA 90 bp AGAAGGCATCGGATCCTGTTACAGATGGTTGTGAGCCACCACGTGGCTGCTAGGACGTGCCATAGCAGGTaGCCCCCGAGACCGGCTGGC +
Preference number: 2 (lower is better)
Translates to: RRHRILLQMVVSHHVAARTCHSR*PPRPAG
Trigger: GCCAGCCGGTCTCGGGGGTCACCTGCTATGGCACGT...CCTAGCAGCCACGTGGTGGCTCACAACCATCTGTAACAGGATCCGATGCCTTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR CCA 90 bp AGAAGGCATCGGATCCTGTTACAGATGGTTGTGAGCCACCACGTGGCTGCTAGGGGTCAGCGCCGTGGGTaGGCAGAGGAGCTGCAGCTG +
Preference number: 2 (lower is better)
Translates to: RRHRILLQMVVSHHVAARGQRRG*AEELQL
Trigger: CAGCTGCAGCTCCTCTGCCCACCCACGGCGCTGACC...CCTAGCAGCCACGTGGTGGCTCACAACCATCTGTAACAGGATCCGATGCCTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR CCA 90 bp GGCACTGCCAGAAAGAAAAAGAGCCCACACGGAGCCCTGAGCTGCCTTCTCCAGCTTTGGTCAGCGCCGTaGGTGGGCAGAGGAGCTGCA +
Preference number: 2 (lower is better)
Translates to: GTARKKKSPHGALSCLLQLWSAP*VGRGAA
Trigger: TGCAGCTCCTCTGCCCACCCACGGCGCTGACCAAAG...CTGGAGAAGGCAGCTCAGGGCTCCGTGTGGGCTCTTTTTCTTTCTGGCAGTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR TCA 90 bp AGAAGGCATCGGATCCTGTTACAGATGGTTGTGAGCCACCACGTGGCTGCTAGGTCCTCAGCTACACAGTaGGCTGGAGGCCAGCCTGGG +
Preference number: 2 (lower is better)
Translates to: RRHRILLQMVVSHHVAARSSATQ*AGGQPG
Trigger: CCCAGGCTGGCCTCCAGCTCACTGTGTAGCTGAGGA...CCTAGCAGCCACGTGGTGGCTCACAACCATCTGTAACAGGATCCGATGCCTTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR CCA 90 bp AGAAGGCATCGGATCCTGTTACAGATGGTTGTGAGCCACCACGTGGCTGCTAGGAGTCCCAGCCATGCCTaGTTTCGCACACCTGGGAGA +
Preference number: 2 (lower is better)
Translates to: RRHRILLQMVVSHHVAARSPSHA*FRTPGR
Trigger: TCTCCCAGGTGTGCGAAACCAGGCATGGCTGGGACT...CCTAGCAGCCACGTGGTGGCTCACAACCATCTGTAACAGGATCCGATGCCTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR TCA 90 bp AGAAGGCATCGGATCCTGTTACAGATGGTTGTGAGCCACCACGTGGCTGCTAGGCTGAGGTTACAGGGATaGCCACAAACAGCTGTGAGC +
Preference number: 2 (lower is better)
Translates to: RRHRILLQMVVSHHVAARLRLQG*PQTAVS
Trigger: GCTCACAGCTGTTTGTGGTCATCCCTGTAACCTCAG...CCTAGCAGCCACGTGGTGGCTCACAACCATCTGTAACAGGATCCGATGCCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR GCA 90 bp CCATACAAAACTGAGGTTACAGGGATGACCACAAACAGCTGTGAGCACCAAGAGGGCTGGGAGCTGCTGTaGCGGGCCAGGATAGCTCAA +
Preference number: 2 (lower is better)
Translates to: PYKTEVTGMTTNSCEHQEGWELL*RARIAQ
Trigger: TTGAGCTATCCTGGCCCGGCACAGCAGCTCCCAGCC...CTCTTGGTGCTCACAGCTGTTTGTGGTCATCCCTGTAACCTCAGTTTTGTATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR TCA 90 bp GTGTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAAGAGTCACCAGCCTCTaGTCCCCTCTGAGTGCCCCA +
Preference number: 2 (lower is better)
Translates to: VSITDGCEPPCGCWELNSRVTSL*SPLSAP
Trigger: TGGGGCACTCAGAGGGGATCAGAGGCTGGTGACTCT...TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR GCA 90 bp CTGCTAGGGATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACCTGATCCCCTCTGAGTaGCCCAGCCATACTGCTATA +
Preference number: 2 (lower is better)
Translates to: LLGIELRTSGRAVSALNHLIPSE*PSHTAI
Trigger: TATAGCAGTATGGCTGGGGCACTCAGAGGGGATCAG...GTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATCCCTAGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR CCA 90 bp CTGCTAGGGATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACATAGAAACTCGGGTCTaGGTAGGCACCAACCCCCAT +
Preference number: 2 (lower is better)
Translates to: LLGIELRTSGRAVSALNHIETRV*VGTNPH
Trigger: ATGGGGGTTGGTGCCTACCCAGACCCGAGTTTCTAT...GTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATCCCTAGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CAA 90 bp GTGTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATaGAACTCAGGACCTCGGAAAGAGCAGTCAGTGCTCTTAACCGCT +
Preference number: 2 (lower is better)
Translates to: VSITDGCEPPCGCWE*NSGPRKEQSVLLTA
Trigger: AGCGGTTAAGAGCACTGACTGCTCTTTCCGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR GCA 90 bp GTTTCTGTCTATGCTGAATGTTTAGGTCTGGCCTCTGGTGTGTTCATGGTCATGCACGGAGCCCTGAGCTaGCTTCTCCAGGACTCAGAA +
Preference number: 2 (lower is better)
Translates to: VSVYAECLGLASGVFMVMHGALS*LLQDSE
Trigger: TTCTGAGTCCTGGAGAAGGCAGCTCAGGGCTCCGTG...CATGACCATGAACACACCAGAGGCCAGACCTAAACATTCAGCATAGACAGAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR CCA 90 bp ACTTGTGATACCATTCTCCTACAGGAGCCCTGGACTCAGCTACTTCTCCATGTACAGAGGAGCTGCAGCTaGTCCTGTCCAGCTTGTGTA +
Preference number: 2 (lower is better)
Translates to: TCDTILLQEPWTQLLLHVQRSCS*SCPACV
Trigger: TACACAAGCTGGACAGGACCAGCTGCAGCTCCTCTG...TACATGGAGAAGTAGCTGAGTCCAGGGCTCCTGTAGGAGAATGGTATCACAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR GCA 90 bp CCATACAAAACTGAGGTTACAGGGATGACCACAAACAGCTGTGAGCACCAAGAGCACTGGCCAAGGCACTaGCAGAAAGAAAAAGAGCCC +
Preference number: 2 (lower is better)
Translates to: PYKTEVTGMTTNSCEHQEHWPRH*QKEKEP
Trigger: GGGCTCTTTTTCTTTCTGGCAGTGCCTTGGCCAGTG...CTCTTGGTGCTCACAGCTGTTTGTGGTCATCCCTGTAACCTCAGTTTTGTATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR CCA 90 bp GTGTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGGCATAATGACCACTaGCCAAGGCACTGCCAGAAA +
Preference number: 2 (lower is better)
Translates to: VSITDGCEPPCGCWELNSGHNDH*PRHCQK
Trigger: TTTCTGGCAGTGCCTTGGCCAGTGGTCATTATGCCC...TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR CCA 90 bp TTATTTATGAATACACTGTCGCTGTCTTCAGATGCACCAGAAGAAGGCATCGGAAGCTACACAGTGAGCTaGAGGCCAGCCTGGGCTACG +
Preference number: 2 (lower is better)
Translates to: LFMNTLSLSSDAPEEGIGSYTVS*RPAWAT
Trigger: CGTAGCCCAGGCTGGCCTCCAGCTCACTGTGTAGCT...TCCGATGCCTTCTTCTGGTGCATCTGAAGACAGCGACAGTGTATTCATAAATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR TCA 90 bp AGAAGGCATCGGATCCTGTTACAGATGGTTGTGAGCCACCACGTGGCTGCTAGGGTTATTCTCTATTCTTaGGAGACAAGGTGGCAAGAT +
Preference number: 2 (lower is better)
Translates to: RRHRILLQMVVSHHVAARVILYS*ETRWQD
Trigger: ATCTTGCCACCTTGTCTCTCAAGAATAGAGAATAAC...CCTAGCAGCCACGTGGTGGCTCACAACCATCTGTAACAGGATCCGATGCCTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR TCA 90 bp CTGCTAGGGATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACATCTCTCCAACCCCTTaGAGTTATTCTCTATTCTTG +
Preference number: 2 (lower is better)
Translates to: LLGIELRTSGRAVSALNHISPTP*SYSLFL
Trigger: CAAGAATAGAGAATAACTTCAAGGGGTTGGAGAGAT...GTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATCCCTAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR TCA 90 bp CCATACAAAACTGAGGTTACAGGGATGACCACAAACAGCTGTGAGCACCAAGAGAGCCTTCTCTCAATCTaGCAAGAGACTTCCAAACAA +
Preference number: 2 (lower is better)
Translates to: PYKTEVTGMTTNSCEHQESLLSI*QETSKQ
Trigger: TTGTTTGGAAGTCTCTTGTCAGATTGAGAGAAGGCT...CTCTTGGTGCTCACAGCTGTTTGTGGTCATCCCTGTAACCTCAGTTTTGTATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR CCA 90 bp TTATTTATGAATACACTGTCGCTGTCTTCAGATGCACCAGAAGAAGGCATCGGAAGGACTCAAGGCACCTaGGAATTTGAGACACAGTCC +
Preference number: 2 (lower is better)
Translates to: LFMNTLSLSSDAPEEGIGRTQGT*EFETQS
Trigger: GGACTGTGTCTCAAATTCCCAGGTGCCTTGAGTCCT...TCCGATGCCTTCTTCTGGTGCATCTGAAGACAGCGACAGTGTATTCATAAATAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR CCA 90 bp GTTTCTGTCTATGCTGAATGTTTAGGTCTGGCCTCTGGTGTGTTCATGGTCATGAACATATGTAGAAAATaGGTGGGCAAAGCAGGAGCC +
Preference number: 2 (lower is better)
Translates to: VSVYAECLGLASGVFMVMNICRK*VGKAGA
Trigger: GGCTCCTGCTTTGCCCACCCATTTTCTACATATGTT...CATGACCATGAACACACCAGAGGCCAGACCTAAACATTCAGCATAGACAGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR TCA 90 bp TCTTCATACACAGTCCCATGCCTCAACATGTTGGTTAACTGTGCCTCTGTTTCCAGGCTTAGCTGGGTCTaGGATTCTTGTTTTATATCT +
Preference number: 2 (lower is better)
Translates to: SSYTVPCLNMLVNCASVSRLSWV*DSCFIS
Trigger: AGATATAAAACAAGAATCTCAGACCCAGCTAAGCCT...GGAAACAGAGGCACAGTTAACCAACATGTTGAGGCATGGGACTGTGTATGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR TCA 90 bp TTATTTATGAATACACTGTCGCTGTCTTCAGATGCACCAGAAGAAGGCATCGGAGTTTCCATACAAAACTaGGGTTACAGGGATGACCAC +
Preference number: 2 (lower is better)
Translates to: LFMNTLSLSSDAPEEGIGVSIQN*GYRDDH
Trigger: GTGGTCATCCCTGTAACCTCAGTTTTGTATGGAAAC...TCCGATGCCTTCTTCTGGTGCATCTGAAGACAGCGACAGTGTATTCATAAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR GCA 90 bp TTATTTATGAATACACTGTCGCTGTCTTCAGATGCACCAGAAGAAGGCATCGGATTGTGTAGTCTTAGATaGACTTTGCAGTACAGTCCG +
Preference number: 2 (lower is better)
Translates to: LFMNTLSLSSDAPEEGIGLCSLR*TLQYSP
Trigger: CGGACTGTACTGCAAAGTGCATCTAAGACTACACAA...TCCGATGCCTTCTTCTGGTGCATCTGAAGACAGCGACAGTGTATTCATAAATAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR GCA 90 bp CCATACAAAACTGAGGTTACAGGGATGACCACAAACAGCTGTGAGCACCAAGAGTTTAAAAATAATCACTaGAAAACTGCCCTTGAAGGG +
Preference number: 2 (lower is better)
Translates to: PYKTEVTGMTTNSCEHQEFKNNH*KTALEG
Trigger: CCCTTCAAGGGCAGTTTTGCAGTGATTATTTTTAAA...CTCTTGGTGCTCACAGCTGTTTGTGGTCATCCCTGTAACCTCAGTTTTGTATGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CCA 72 bp GTGGCCATCAGACACTATACGCAGGTACATACACCCTaGGCTTTGGTCAGCGCCGTGGGTGGGCAGAGGAGC +
Preference number: 3 (lower is better)
Translates to: VAIRHYTQVHTP*ALVSAVGGQRS
Trigger: GCTCCTCTGCCCACCCACGGCGCTGACCAAAGCCCAGGGTGTATGTACCTGCGTATAGTGTCTGATGGCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CCA 72 bp TCAGACACTATACGCAGGTACATACACCCTGGGCTTTaGTCAGCGCCGTGGGTGGGCAGAGGAGCTGCAGCT +
Preference number: 3 (lower is better)
Translates to: SDTIRRYIHPGL*SAPWVGRGAAA
Trigger: AGCTGCAGCTCCTCTGCCCACCCACGGCGCTGACCAAAGCCCAGGGTGTATGTACCTGCGTATAGTGTCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR TCA 72 bp GGAATCAGGAGCTTAAGGATATCCTCAGCTACACAGTaGGCTGGAGGCCAGCCTGGGCTACGTGAGACCCCG +
Preference number: 3 (lower is better)
Translates to: GIRSLRISSATQ*AGGQPGLRETP
Trigger: CGGGGTCTCACGTAGCCCAGGCTGGCCTCCAGCTCACTGTGTAGCTGAGGATATCCTTAAGCTCCTGATTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR GCA 72 bp TGGTCCTGTCCAGCTTGTGTAGTCTTAGATGCACTTTaGAGTACAGTCCGGCTGGGAGCTGCTGTGCCGGGC +
Preference number: 3 (lower is better)
Translates to: WSCPACVVLDAL*STVRLGAAVPG
Trigger: GCCCGGCACAGCAGCTCCCAGCCGGACTGTACTGCAAAGTGCATCTAAGACTACACAAGCTGGACAGGACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR GCA 72 bp GCCAGAAAGAAAAAGAGCCCACACGGAGCCCTGAGCTaGCTTCTCCAGGACTCAGAACCGGAGCTGGGCTAT +
Preference number: 3 (lower is better)
Translates to: ARKKKSPHGALS*LLQDSEPELGY
Trigger: ATAGCCCAGCTCCGGTTCTGAGTCCTGGAGAAGGCAGCTCAGGGCTCCGTGTGGGCTCTTTTTCTTTCTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR TCA 72 bp AGCTACACAGTGAGCTGGAGGCCAGCCTGGGCTACGTaGGACCCCGTCTCAACAACCAAAGGGGGATTAGTT +
Preference number: 3 (lower is better)
Translates to: SYTVSWRPAWAT*DPVSTTKGGLV
Trigger: AACTAATCCCCCTTTGGTTGTTGAGACGGGGTCTCACGTAGCCCAGGCTGGCCTCCAGCTCACTGTGTAGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR TCA 72 bp GGCAGAGAGAGGGAGAATGACAGAGTCACCAGCCTCTaGTCCCCTCTGAGTGCCCCAGCCATACTGCTATAC +
Preference number: 3 (lower is better)
Translates to: GRERENDRVTSL*SPLSAPAILLY
Trigger: GTATAGCAGTATGGCTGGGGCACTCAGAGGGGATCAGAGGCTGGTGACTCTGTCATTCTCCCTCTCTCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CCA 72 bp GAGCAGCAGTCCCAGCCATGCCTGGTTTCGCACACCTaGGAGAGTCTGTCTATACACAGACGCAACTCAAGC +
Preference number: 3 (lower is better)
Translates to: EQQSQPCLVSHT*ESLSIHRRNSS
Trigger: GCTTGAGTTGCGTCTGTGTATAGACAGACTCTCCCAGGTGTGCGAAACCAGGCATGGCTGGGACTGCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CCA 72 bp ACCACCCAGCCCTGTGCCCTGATCAAAGGGGCTCAGTaGAGCCACGAGATAAAGAGCTTTCAGGCCCCAAAT +
Preference number: 3 (lower is better)
Translates to: TTQPCALIKGAQ*SHEIKSFQAPN
Trigger: ATTTGGGGCCTGAAAGCTCTTTATCTCGTGGCTCCACTGAGCCCCTTTGATCAGGGCACAGGGCTGGGTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR TCA 72 bp TCACAGAAAAACCTAGAAACCCAGGTAGGGTTGGGGTaGCACTTGGACCGACTGCTCCTGCAAGGCCGGATG +
Preference number: 3 (lower is better)
Translates to: SQKNLETQVGLG*HLDRLLLQGRM
Trigger: CATCCGGCCTTGCAGGAGCAGTCGGTCCAAGTGTCACCCCAACCCTACCTGGGTTTCTAGGTTTTTCTGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR TCA 72 bp CAGATGGTTGTGAGCCACCACGTGGCTGCTAGGGATTaGACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCT +
Preference number: 3 (lower is better)
Translates to: QMVVSHHVAARD*TQDLWKSSQCS
Trigger: AGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATCCCTAGCAGCCACGTGGTGGCTCACAACCATCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR GCA 72 bp CTGCAGCTGGTCCTGTCCAGCTTGTGTAGTCTTAGATaGACTTTGCAGTACAGTCCGGCTGGGAGCTGCTGT +
Preference number: 3 (lower is better)
Translates to: LQLVLSSLCSLR*TLQYSPAGSCC
Trigger: ACAGCAGCTCCCAGCCGGACTGTACTGCAAAGTGCATCTAAGACTACACAAGCTGGACAGGACCAGCTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR TCA 72 bp GGGAGAATGACAGAGTCACCAGCCTCTGATCCCCTCTaGGTGCCCCAGCCATACTGCTATACTACAGGATTC +
Preference number: 3 (lower is better)
Translates to: GRMTESPASDPL*VPQPYCYTTGF
Trigger: GAATCCTGTAGTATAGCAGTATGGCTGGGGCACTCAGAGGGGATCAGAGGCTGGTGACTCTGTCATTCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR TCA 72 bp CCAGAAGAAGGCATCGGATCCTGTTACAGATGGTTGTaGGCCACCACGTGGCTGCTAGGGATTGAACTCAGG +
Preference number: 3 (lower is better)
Translates to: PEEGIGSCYRWL*ATTWLLGIELR
Trigger: CCTGAGTTCAATCCCTAGCAGCCACGTGGTGGCTCACAACCATCTGTAACAGGATCCGATGCCTTCTTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR TCA 72 bp CAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTaGACTCAGGACCTCGGAAAGAGCAGTCAGTGCTCT +
Preference number: 3 (lower is better)
Translates to: QMVVSHHVVAGN*TQDLGKSSQCS
Trigger: AGAGCACTGACTGCTCTTTCCGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CCA 72 bp TCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGAATTGAACTCAGGACCTCGGAAAGAGCAGTCA +
Preference number: 3 (lower is better)
Translates to: SITDGCEPPCGC*ELNSGPRKEQS
Trigger: TGACTGCTCTTTCCGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR CAA 90 bp GTGTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCACTGGTCCTGTCCAGCTaGTGTAGTCTTAGATGCACT +
Preference number: 3 (lower is better)
Translates to: VSITDGCEPPCGCWELNSLVLSS*CSLRCT
Trigger: AGTGCATCTAAGACTACACAAGCTGGACAGGACCAG...TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR CAA 90 bp AGAAGGCATCGGATCCTGTTACAGATGGTTGTGAGCCACCACGTGGCTGCTAGGGTGGTTTTATTTTTCTaGAGAGGCAAGAGACAGCTT +
Preference number: 3 (lower is better)
Translates to: RRHRILLQMVVSHHVAARVVLFF*RGKRQL
Trigger: AAGCTGTCTCTTGCCTCTCAAGAAAAATAAAACCAC...CCTAGCAGCCACGTGGTGGCTCACAACCATCTGTAACAGGATCCGATGCCTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR TCA 72 bp CTACCTCGGTTACTTTCTATAACACGGGTAGACTTGTaGTACCATTCTCCTACAGGAGCCCTGGACTCAGCT +
Preference number: 3 (lower is better)
Translates to: LPRLLSITRVDL*YHSPTGALDSA
Trigger: AGCTGAGTCCAGGGCTCCTGTAGGAGAATGGTATCACAAGTCTACCCGTGTTATAGAAAGTAACCGAGGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR GCA 72 bp CGCAACTCAAGCAGAGGTTCTTCATACACAGTCCCATaGCTCAACATGTTGGTTAACTGTGCCTCTGTTTCC +
Preference number: 3 (lower is better)
Translates to: RNSSRGSSYTVP*LNMLVNCASVS
Trigger: GGAAACAGAGGCACAGTTAACCAACATGTTGAGGCATGGGACTGTGTATGAAGAACCTCTGCTTGAGTTGCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR CAA 90 bp GTGTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCACCATGCCTCAACATGTaGGTTAACTGTGCCTCTGTT +
Preference number: 3 (lower is better)
Translates to: VSITDGCEPPCGCWELNSPCLNM*VNCASV
Trigger: AACAGAGGCACAGTTAACCAACATGTTGAGGCATGG...TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR CAA 90 bp CTGCTAGGGATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACCTGGGTCTGAGATTCTaGTTTTATATCTATTGCCCT +
Preference number: 3 (lower is better)
Translates to: LLGIELRTSGRAVSALNHLGLRF*FYIYCP
Trigger: AGGGCAATAGATATAAAACAAGAATCTCAGACCCAG...GTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATCCCTAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR CAA 90 bp CTGCTAGGGATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACAGTTATTCTCTATTCTaGAGAGACAAGGTGGCAAGA +
Preference number: 3 (lower is better)
Translates to: LLGIELRTSGRAVSALNHSYSLF*RDKVAR
Trigger: TCTTGCCACCTTGTCTCTCAAGAATAGAGAATAACT...GTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATCCCTAGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR GCA 72 bp CCTGAGTGCTGGATTACAGGCATGGATCAGCCCCCATaGTCAGCAAATTACTATTTACTTGTGCTGTGCATA +
Preference number: 3 (lower is better)
Translates to: PECWITGMDQPP*SANYYLLVLCI
Trigger: TATGCACAGCACAAGTAAATAGTAATTTGCTGAGCATGGGGGCTGATCCATGCCTGTAATCCAGCACTCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR TCA 72 bp TGCCTCTGTTTCCATACAAAACTGAGGTTACAGGGATaGCCACAAACAGCTGTGAGCACCAAGAGTTTCTGT +
Preference number: 3 (lower is better)
Translates to: CLCFHTKLRLQG*PQTAVSTKSFC
Trigger: ACAGAAACTCTTGGTGCTCACAGCTGTTTGTGGTCATCCCTGTAACCTCAGTTTTGTATGGAAACAGAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR-3UTR CAA 90 bp GTGTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCACATCTCTCCAACCCCTaGAAGTTATTCTCTATTCTT +
Preference number: 3 (lower is better)
Translates to: VSITDGCEPPCGCWELNSHLSNP*KLFSIL
Trigger: AAGAATAGAGAATAACTTCAAGGGGTTGGAGAGATG...TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CCA 72 bp GAGGTTCTTCATACACAGTCCCATGCCTCAACATGTTaGTTAACTGTGCCTCTGTTTCCATACAAAACTGAG +
Preference number: 3 (lower is better)
Translates to: EVLHTQSHASTC*LTVPLFPYKTE
Trigger: CTCAGTTTTGTATGGAAACAGAGGCACAGTTAACCAACATGTTGAGGCATGGGACTGTGTATGAAGAACCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CAA 72 bp ATCAGACACTATACGCAGGTACATACACCCTGGGCTTaGGTCAGCGCCGTGGGTGGGCAGAGGAGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: IRHYTQVHTPWA*VSAVGGQRSCS
Trigger: GCTGCAGCTCCTCTGCCCACCCACGGCGCTGACCAAAGCCCAGGGTGTATGTACCTGCGTATAGTGTCTGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR GCA 90 bp CTGTTCCCGGGATCCCACAGGGTTCAGCTTTCCCCTAGGAGGAGTGGCCATCAGACTGAGGAAGCAGGATaGCCAGTAAAAGGCCCGCCA +
Preference number: 4 (lower is better)
Translates to: LFPGSHRVQLSPRRSGHQTEEAG*PVKGPP
Trigger: TGGCGGGCCTTTTACTGGGCATCCTGCTTCCTCAGT...CTGATGGCCACTCCTCCTAGGGGAAAGCTGAACCCTGTGGGATCCCGGGAACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR TCA 90 bp AGAAGGCATCGGATCCTGTTACAGATGGTTGTGAGCCACCACGTGGCTGCTAGGAGCCACACATGGTGTTaGCAACATCTGTCGTGTTCC +
Preference number: 4 (lower is better)
Translates to: RRHRILLQMVVSHHVAARSHTWC*QHLSCS
Trigger: GGAACACGACAGATGTTGTCAACACCATGTGTGGCT...CCTAGCAGCCACGTGGTGGCTCACAACCATCTGTAACAGGATCCGATGCCTTCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR TCA 90 bp CTGCTAGGGATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACAGCCCCGCACGTGAATaGTGTTCTGTGCATTCAGGC +
Preference number: 4 (lower is better)
Translates to: LLGIELRTSGRAVSALNHSPARE*CSVHSG
Trigger: GCCTGAATGCACAGAACATCATTCACGTGCGGGGCT...GTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATCCCTAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR TCA 90 bp GGCACTGCCAGAAAGAAAAAGAGCCCACACGGAGCCCTGAGCTGCCTTCTCCAGTGGTATAGTTGTCCATaGACCATATCAACACGGCGT +
Preference number: 4 (lower is better)
Translates to: GTARKKKSPHGALSCLLQWYSCP*TISTRR
Trigger: ACGCCGTGTTGATATGGTTCATGGACAACTATACCA...CTGGAGAAGGCAGCTCAGGGCTCCGTGTGGGCTCTTTTTCTTTCTGGCAGTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CAA 72 bp ACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATaGAACTCAGGACCTCGGAAAGAGCAGTCAGTGCTC +
Preference number: 4 (lower is better)
Translates to: TDGCEPPCGCWE*NSGPRKEQSVL
Trigger: GAGCACTGACTGCTCTTTCCGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR CCA 90 bp CCATACAAAACTGAGGTTACAGGGATGACCACAAACAGCTGTGAGCACCAAGAGCTGCTGTGTCCGTTCTaGACTTGGCACCAGGTCCCA +
Preference number: 4 (lower is better)
Translates to: PYKTEVTGMTTNSCEHQELLCPF*TWHQVP
Trigger: TGGGACCTGGTGCCAAGTCCAGAACGGACACAGCAG...CTCTTGGTGCTCACAGCTGTTTGTGGTCATCCCTGTAACCTCAGTTTTGTATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR TCA 90 bp ACTTGTGATACCATTCTCCTACAGGAGCCCTGGACTCAGCTACTTCTCCATGTACATCTGTCGTGTTCCTaGTGCAGCAGGTGTAGGGCA +
Preference number: 4 (lower is better)
Translates to: TCDTILLQEPWTQLLLHVHLSCS*CSRCRA
Trigger: TGCCCTACACCTGCTGCATCAGGAACACGACAGATG...TACATGGAGAAGTAGCTGAGTCCAGGGCTCCTGTAGGAGAATGGTATCACAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR GCA 90 bp CCATACAAAACTGAGGTTACAGGGATGACCACAAACAGCTGTGAGCACCAAGAGGTATTTCTGCCGCTCTaGCTCTGCGTAGATCCCCAC +
Preference number: 4 (lower is better)
Translates to: PYKTEVTGMTTNSCEHQEVFLPL*LCVDPH
Trigger: GTGGGGATCTACGCAGAGGCAGAGCGGCAGAAATAC...CTCTTGGTGCTCACAGCTGTTTGTGGTCATCCCTGTAACCTCAGTTTTGTATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR GCA 90 bp TCTTCATACACAGTCCCATGCCTCAACATGTTGGTTAACTGTGCCTCTGTTTCCACAGGCAGCATCCAGTaGCTGCTGTGTCCGTTCTGG +
Preference number: 4 (lower is better)
Translates to: SSYTVPCLNMLVNCASVSTGSIQ*LLCPFW
Trigger: CCAGAACGGACACAGCAGGCACTGGATGCTGCCTGT...GGAAACAGAGGCACAGTTAACCAACATGTTGAGGCATGGGACTGTGTATGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR CCA 90 bp CCATACAAAACTGAGGTTACAGGGATGACCACAAACAGCTGTGAGCACCAAGAGATATCAACACGGCGTTaGTGCAGCCCCGCACGTGAA +
Preference number: 4 (lower is better)
Translates to: PYKTEVTGMTTNSCEHQEISTRR*CSPARE
Trigger: TTCACGTGCGGGGCTGCACCAACGCCGTGTTGATAT...CTCTTGGTGCTCACAGCTGTTTGTGGTCATCCCTGTAACCTCAGTTTTGTATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR TCA 90 bp ACTTGTGATACCATTCTCCTACAGGAGCCCTGGACTCAGCTACTTCTCCATGTAAGCACACCAAGAAACTaGGGAAGCAGGATGCCCAGT +
Preference number: 4 (lower is better)
Translates to: TCDTILLQEPWTQLLLHVSTPRN*GSRMPS
Trigger: ACTGGGCATCCTGCTTCCTCAGTTTCTTGGTGTGCT...TACATGGAGAAGTAGCTGAGTCCAGGGCTCCTGTAGGAGAATGGTATCACAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR GCA 90 bp ATGAATACACTGTCGCTGTCTTCAGATGCACCAGAAGAAGGCATCGGATCCTGTCCATCCGTGACAGAGTaGTCCAAGATAATGTCCTCC +
Preference number: 4 (lower is better)
Translates to: MNTLSLSSDAPEEGIGSCPSVTE*SKIMSS
Trigger: GGAGGACATTATCTTGGAGCACTCTGTCACGGATGG...ACAGGATCCGATGCCTTCTTCTGGTGCATCTGAAGACAGCGACAGTGTATTCAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR TCA 90 bp TTATTTATGAATACACTGTCGCTGTCTTCAGATGCACCAGAAGAAGGCATCGGAGTGCAGCCCCGCACGTaGATGATGTTCTGTGCATTC +
Preference number: 4 (lower is better)
Translates to: LFMNTLSLSSDAPEEGIGVQPRT*MMFCAF
Trigger: GAATGCACAGAACATCATTCACGTGCGGGGCTGCAC...TCCGATGCCTTCTTCTGGTGCATCTGAAGACAGCGACAGTGTATTCATAAATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
3UTR CAA 72 bp GGAGGGGTGAGTGGACTCGGTCAGGGGTGGCTAGTTTaGAATAGCCAGAAACTCTTGTTAATTGTATACAAA +
Preference number: 4 (lower is better)
Translates to: GGVSGLGQGWLV*NSQKLLLIVYK
Trigger: TTTGTATACAATTAACAAGAGTTTCTGGCTATTCAAAACTAGCCACCCCTGACCGAGTCCACTCACCCCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR TCA 90 bp GTTTCTGTCTATGCTGAATGTTTAGGTCTGGCCTCTGGTGTGTTCATGGTCATGCACTTGAACTTCTTCTaGACAAAGTCCATGATGTTC +
Preference number: 4 (lower is better)
Translates to: VSVYAECLGLASGVFMVMHLNFF*TKSMMF
Trigger: GAACATCATGGACTTTGTTCAGAAGAAGTTCAAGTG...CATGACCATGAACACACCAGAGGCCAGACCTAAACATTCAGCATAGACAGAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR CAA 90 bp CTGCTAGGGATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGCAGAAGGCACAGGTaGTCCCGGAGGGAAGCCAGC +
Preference number: 5 (lower is better)
Translates to: LLGIELRTSGRAVSALNHCRRHR*SRREAS
Trigger: GCTGGCTTCCCTCCGGGACAACCTGTGCCTTCTGCA...GTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATCCCTAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR CAA 90 bp AGAAGGCATCGGATCCTGTTACAGATGGTTGTGAGCCACCACGTGGCTGCTAGGGTGTCCGTTCTGGACTaGGCACCAGGTCCCAGCAAT +
Preference number: 5 (lower is better)
Translates to: RRHRILLQMVVSHHVAARVSVLD*APGPSN
Trigger: ATTGCTGGGACCTGGTGCCAAGTCCAGAACGGACAC...CCTAGCAGCCACGTGGTGGCTCACAACCATCTGTAACAGGATCCGATGCCTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS GCA 90 bp ATAAGCTCCATGACCAGGCAGATCCCCAGGATATACATAAACGACTaGAGAAGGCACAGGTTGTCCCGGAGGGAAGCCAGCACCCCGATG +
Preference number: 5 (lower is better)
Translates to: ISSMTRQIPRIYIND*RRHRLSRREASTPM
Trigger: CATCGGGGTGCTGGCTTCCCTCCGGGACAACCTGTGCCTTCTGCAGTCGTTTATGTATATCCTGGGGATCTGCCTGGTCATGGAGCTTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS GCA 90 bp GTTCTGGACTTGGCACCAGGTCCCAGCAATCCATCCGTGACAGAGTaGTCCAAGATAATGTCCTCCACACGGGTGATGTACAGTAGGGTC +
Preference number: 5 (lower is better)
Translates to: VLDLAPGPSNPSVTE*SKIMSSTRVMYSRV
Trigger: GACCCTACTGTACATCACCCGTGTGGAGGACATTATCTTGGAGCACTCTGTCACGGATGGATTGCTGGGACCTGGTGCCAAGTCCAGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS TCA 90 bp TTGTCCATGAACCATATCAACACGGCGTTGGTGCAGCCCCGCACGTaGATGATGTTCTGTGCATTCAGGCGCTCCTTGTCGATTGTTTTG +
Preference number: 5 (lower is better)
Translates to: LSMNHINTALVQPRT*MMFCAFRRSLSIVL
Trigger: CAAAACAATCGACAAGGAGCGCCTGAATGCACAGAACATCATTCACGTGCGGGGCTGCACCAACGCCGTGTTGATATGGTTCATGGACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR CAA 90 bp ACTTGTGATACCATTCTCCTACAGGAGCCCTGGACTCAGCTACTTCTCCATGTAGCACTCTCCAGGGTTTaGTATTTCTGCCGCTCTGCC +
Preference number: 5 (lower is better)
Translates to: TCDTILLQEPWTQLLLHVALSRV*YFCRSA
Trigger: GGCAGAGCGGCAGAAATACAAAACCCTGGAGAGTGC...TACATGGAGAAGTAGCTGAGTCCAGGGCTCCTGTAGGAGAATGGTATCACAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS-3UTR CAA 90 bp ATGAATACACTGTCGCTGTCTTCAGATGCACCAGAAGAAGGCATCGGATCCTGTGGCGCTCCTTGTCGATaGTTTTGTAGCCACACATGG +
Preference number: 5 (lower is better)
Translates to: MNTLSLSSDAPEEGIGSCGAPCR*FCSHTW
Trigger: CCATGTGTGGCTACAAAACAATCGACAAGGAGCGCC...ACAGGATCCGATGCCTTCTTCTGGTGCATCTGAAGACAGCGACAGTGTATTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS CCA 90 bp TTCTCGATTCCTCTCCGGATGTTGTCGTTCAGAAAGTCAATAGTCTaGTTCCGGAAGATCAAAGCCACTATGCCACCAATAAGCTCCATG +
Preference number: 5 (lower is better)
Translates to: FSIPLRMLSFRKSIV*FRKIKATMPPISSM
Trigger: CATGGAGCTTATTGGTGGCATAGTGGCTTTGATCTTCCGGAACCAGACTATTGACTTTCTGAACGACAACATCCGGAGAGGAATCGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS TCA 72 bp GTATTTCTGCCGCTCTGCCTCTGCGTAGATCCCCACTaGCAGGACCAGGCCCCCAATCAGCCAGAACACGGT +
Preference number: 6 (lower is better)
Translates to: VFLPLCLCVDPH*QDQAPNQPEHG
Trigger: ACCGTGTTCTGGCTGATTGGGGGCCTGGTCCTGTCAGTGGGGATCTACGCAGAGGCAGAGCGGCAGAAATAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS CAA 90 bp AGGCAGATCCCCAGGATATACATAAACGACTGCAGAAGGCACAGGTaGTCCCGGAGGGAAGCCAGCACCCCGATGAAGGAGACGATGAAC +
Preference number: 6 (lower is better)
Translates to: RQIPRIYINDCRRHR*SRREASTPMKETMN
Trigger: GTTCATCGTCTCCTTCATCGGGGTGCTGGCTTCCCTCCGGGACAACCTGTGCCTTCTGCAGTCGTTTATGTATATCCTGGGGATCTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS TCA 72 bp AACCATATCAACACGGCGTTGGTGCAGCCCCGCACGTaGATGATGTTCTGTGCATTCAGGCGCTCCTTGTCG +
Preference number: 6 (lower is better)
Translates to: NHINTALVQPRT*MMFCAFRRSLS
Trigger: CGACAAGGAGCGCCTGAATGCACAGAACATCATTCACGTGCGGGGCTGCACCAACGCCGTGTTGATATGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS GCA 72 bp ATGACCAGGCAGATCCCCAGGATATACATAAACGACTaGAGAAGGCACAGGTTGTCCCGGAGGGAAGCCAGC +
Preference number: 6 (lower is better)
Translates to: MTRQIPRIYIND*RRHRLSRREAS
Trigger: GCTGGCTTCCCTCCGGGACAACCTGTGCCTTCTGCAGTCGTTTATGTATATCCTGGGGATCTGCCTGGTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS TCA 72 bp ATATCAACACGGCGTTGGTGCAGCCCCGCACGTGAATaGTGTTCTGTGCATTCAGGCGCTCCTTGTCGATTG +
Preference number: 6 (lower is better)
Translates to: ISTRRWCSPARE*CSVHSGAPCRL
Trigger: CAATCGACAAGGAGCGCCTGAATGCACAGAACATCATTCACGTGCGGGGCTGCACCAACGCCGTGTTGATAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS GCA 72 bp TTGGCACCAGGTCCCAGCAATCCATCCGTGACAGAGTaGTCCAAGATAATGTCCTCCACACGGGTGATGTAC +
Preference number: 6 (lower is better)
Translates to: LAPGPSNPSVTE*SKIMSSTRVMY
Trigger: GTACATCACCCGTGTGGAGGACATTATCTTGGAGCACTCTGTCACGGATGGATTGCTGGGACCTGGTGCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11
CDS CCA 72 bp CCTCTCCGGATGTTGTCGTTCAGAAAGTCAATAGTCTaGTTCCGGAAGATCAAAGCCACTATGCCACCAATA +
Preference number: 6 (lower is better)
Translates to: PLRMLSFRKSIV*FRKIKATMPPI
Trigger: TATTGGTGGCATAGTGGCTTTGATCTTCCGGAACCAGACTATTGACTTTCTGAACGACAACATCCGGAGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047883.11