Pregenerated sensors for TSPAN13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020577Ensembl transcript IDs: ENSMUST00000020896.17, ENSMUST00000220641.2, ENSMUST00000222584.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAAGCCACAGCAGTTCAAATTCCTCTGGATGTCATTTCGAGCACTTaGAGTATTGTTCCATCCGACTTCCAGCAGCTGACCCTGCTGCTC | + |
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Preference number: 1 (lower is better) Translates to: EATAVQIPLDVISST*SIVPSDFQQLTLLL Trigger: GAGCAGCAGGGTCAGCTGCTGGAAGTCGGATGGAACAATACTGCAAGTGCTCGAAATGACATCCAGAGGAATTTGAACTGCTGTGGCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220641.2 |
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| 3UTR GCA 90 bp | AAATTTCATTTTCCTAAAGACACAGCTATTTCTAGAACACAGGGATaGAATCCTGACAGACTACTAGAACTAAATTATCACTTCTGTGCT | + |
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Preference number: 1 (lower is better) Translates to: KFHFPKDTAISRTQG*NPDRLLELNYHFCA Trigger: AGCACAGAAGTGATAATTTAGTTCTAGTAGTCTGTCAGGATTGCATCCCTGTGTTCTAGAAATAGCTGTGTCTTTAGGAAAATGAAATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR-3UTR TCA 90 bp | TATTGTTCCATCCGACTTCCAGCAGCTGACCCTGCTGCTCCCGATTCAGAGCTAAGATGCCCACAGCAATaGCCACACCCACCACTCGGA | + |
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Preference number: 2 (lower is better) Translates to: YCSIRLPAADPAAPDSELRCPQQ*PHPPLG Trigger: TCCGAGTGGTGGGTGTGGTCATTGCTGTGGGCATCT...TAGCTCTGAATCGGGAGCAGCAGGGTCAGCTGCTGGAAGTCGGATGGAACAATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220641.2 |
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| 3UTR-3UTR TCA 90 bp | TCAAGGCCAGCCTGGTCCACAGAGCTAGTTCTAGGACAACCAAGGCTACACAAAGATTACAGGGACCACTaGGGGCCAGGGAATATGGGG | + |
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Preference number: 2 (lower is better) Translates to: SRPAWSTELVLGQPRLHKDYRDH*GPGNMG Trigger: CCCCATATTCCCTGGCCCTCAGTGGTCCCTGTAATC...TTTGTGTAGCCTTGGTTGTCCTAGAACTAGCTCTGTGGACCAGGCTGGCCTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR-3UTR CCA 90 bp | TCAAGGCCAGCCTGGTCCACAGAGCTAGTTCTAGGACAACCAAGGCTACACAAAAAACATCAACTGTCTTaGGTGGGAGCCCCAGTGCTC | + |
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Preference number: 2 (lower is better) Translates to: SRPAWSTELVLGQPRLHKKHQLS*VGAPVL Trigger: GAGCACTGGGGCTCCCACCCAAGACAGTTGATGTTT...TTTGTGTAGCCTTGGTTGTCCTAGAACTAGCTCTGTGGACCAGGCTGGCCTTGA 52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR CAA 90 bp | GGAAGCCACAGCAGTTCAAATTCCTCTGGATGTCATTTCGAGCACTaGCAGTATTGTTCCATCCGACTTCCAGCAGCTGACCCTGCTGCT | + |
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Preference number: 2 (lower is better) Translates to: GSHSSSNSSGCHFEH*QYCSIRLPAADPAA Trigger: AGCAGCAGGGTCAGCTGCTGGAAGTCGGATGGAACAATACTGCAAGTGCTCGAAATGACATCCAGAGGAATTTGAACTGCTGTGGCTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220641.2 |
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| 3UTR-3UTR GCA 90 bp | AGTGAGATGAAGATCTGGGGTCAAATATCATCTACCCAGGGGTGCCATACACAGGTGGTTTTCAGATACTaGTTCCTTTGTCGTATGAAC | + |
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Preference number: 2 (lower is better) Translates to: SEMKIWGQISSTQGCHTQVVFRY*FLCRMN Trigger: GTTCATACGACAAAGGAAGCAGTATCTGAAAACCAC...CTGTGTATGGCACCCCTGGGTAGATGATATTTGACCCCAGATCTTCATCTCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR-3UTR GCA 90 bp | TTTAAAGATAACCAAATATCTATTTGTTACATGGGCCTGGGCCAATGTATTGACGGCCACGGTGGACAGTaGCAGACACCAACAACAGTA | + |
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Preference number: 2 (lower is better) Translates to: FKDNQISICYMGLGQCIDGHGGQ*QTPTTV Trigger: TACTGTTGTTGGTGTCTGGCACTGTCCACCGTGGCC...GTCAATACATTGGCCCAGGCCCATGTAACAAATAGATATTTGGTTATCTTTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR-3UTR TCA 90 bp | TATCTTCCTCAAATTCATCCCATTTTGAGAGCTGAAGATGTTACACACCAAAGCTGGGTAATTAGACAGTaGGATGAAGATCTGGGGTCA | + |
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Preference number: 2 (lower is better) Translates to: YLPQIHPILRAEDVTHQSWVIRQ*DEDLGS Trigger: TGACCCCAGATCTTCATCTCACTGTCTAATTACCCA...GCTTTGGTGTGTAACATCTTCAGCTCTCAAAATGGGATGAATTTGAGGAAGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR-3UTR TCA 90 bp | GAGCCACAAACACCATTTCTCTCTCAACTTATGGGAGGTAGTACATTCAAATATACAGGGATGCAATCCTaGCAGACTACTAGAACTAAA | + |
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Preference number: 2 (lower is better) Translates to: EPQTPFLSQLMGGSTFKYTGMQS*QTTRTK Trigger: TTTAGTTCTAGTAGTCTGTCAGGATTGCATCCCTGT...ATATTTGAATGTACTACCTCCCATAAGTTGAGAGAGAAATGGTGTTTGTGGCTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR-3UTR CCA 90 bp | GAGCCACAAACACCATTTCTCTCTCAACTTATGGGAGGTAGTACATTCAAATATATCGTTGACATAATGTaGTTTTCAGATACTGCTTCC | + |
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Preference number: 2 (lower is better) Translates to: EPQTPFLSQLMGGSTFKYIVDIM*FSDTAS Trigger: GGAAGCAGTATCTGAAAACCACATTATGTCAACGAT...ATATTTGAATGTACTACCTCCCATAAGTTGAGAGAGAAATGGTGTTTGTGGCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR CAA 90 bp | AGATTATGTAGATATATGCTCTATCTTCCTCAAATTCATCCCATTTaGAGAGCTGAAGATGTTACACACCAAAGCATTTCCCAAATGGTA | + |
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Preference number: 2 (lower is better) Translates to: RLCRYMLYLPQIHPI*RAEDVTHQSISQMV Trigger: TACCATTTGGGAAATGCTTTGGTGTGTAACATCTTCAGCTCTCAAAATGGGATGAATTTGAGGAAGATAGAGCATATATCTACATAATCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR CCA 72 bp | AGAGGCAGGCGGATCCCTGTGAGTTCAAGGCCAGCCTaGTCCACAGAGCTAGTTCTAGGACAACCAAGGCTA | + |
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Preference number: 3 (lower is better) Translates to: RGRRIPVSSRPA*STELVLGQPRL Trigger: TAGCCTTGGTTGTCCTAGAACTAGCTCTGTGGACCAGGCTGGCCTTGAACTCACAGGGATCCGCCTGCCTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR TCA 72 bp | TGCCAGACACCAACAACAGTAGATTACAGGGACCACTaGGGGCCAGGGAATATGGGGAACTTCGATTGCTTT | + |
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Preference number: 3 (lower is better) Translates to: CQTPTTVDYRDH*GPGNMGNFDCF Trigger: AAAGCAATCGAAGTTCCCCATATTCCCTGGCCCTCAGTGGTCCCTGTAATCTACTGTTGTTGGTGTCTGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR TCA 72 bp | TGGGTGGGAGCCCCAGTGCTCTGGGTAATTAGACAGTaGGATGAAGATCTGGGGTCAAATATCATCTACCCA | + |
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Preference number: 3 (lower is better) Translates to: WVGAPVLWVIRQ*DEDLGSNIIYP Trigger: TGGGTAGATGATATTTGACCCCAGATCTTCATCTCACTGTCTAATTACCCAGAGCACTGGGGCTCCCACCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR GCA 72 bp | GCAGGTAAAAATGCTAAGAAAGGCCACGGTGGACAGTaGCAGACACCAACAACAGTAGATTACAGGGACCAC | + |
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Preference number: 3 (lower is better) Translates to: AGKNAKKGHGGQ*QTPTTVDYRDH Trigger: GTGGTCCCTGTAATCTACTGTTGTTGGTGTCTGGCACTGTCCACCGTGGCCTTTCTTAGCATTTTTACCTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR GCA 72 bp | GCAGTTCAAATTCCTCTGGATGTCATTTCGAGCACTTaGAGTATTGTTCCATCCGACTTCCAGCAGCTGACC | + |
|
Preference number: 3 (lower is better) Translates to: AVQIPLDVISST*SIVPSDFQQLT Trigger: GGTCAGCTGCTGGAAGTCGGATGGAACAATACTGCAAGTGCTCGAAATGACATCCAGAGGAATTTGAACTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220641.2 |
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| 3UTR-3UTR CAA 90 bp | AGTGAGATGAAGATCTGGGGTCAAATATCATCTACCCAGGGGTGCCATACACAGCAGATACTGCTTCCTTaGTCGTATGAACAAATTAGT | + |
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Preference number: 3 (lower is better) Translates to: SEMKIWGQISSTQGCHTQQILLP*SYEQIS Trigger: ACTAATTTGTTCATACGACAAAGGAAGCAGTATCTG...CTGTGTATGGCACCCCTGGGTAGATGATATTTGACCCCAGATCTTCATCTCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR CCA 72 bp | CCTAATGAACTGAACACAACAGAGTCTCTTCCTTTCTaGATTCATAAAACATCAACTGTCTTGGGTGGGAGC | + |
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Preference number: 3 (lower is better) Translates to: PNELNTTESLPF*IHKTSTVLGGS Trigger: GCTCCCACCCAAGACAGTTGATGTTTTATGAATCCAGAAAGGAAGAGACTCTGTTGTGTTCAGTTCATTAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR TCA 72 bp | GCTCTATCTTCCTCAAATTCATCCCATTTTGAGAGCTaGAGATGTTACACACCAAAGCATTTCCCAAATGGT | + |
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Preference number: 3 (lower is better) Translates to: ALSSSNSSHFES*RCYTPKHFPNG Trigger: ACCATTTGGGAAATGCTTTGGTGTGTAACATCTTCAGCTCTCAAAATGGGATGAATTTGAGGAAGATAGAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR-3UTR CAA 90 bp | TATCTTCCTCAAATTCATCCCATTTTGAGAGCTGAAGATGTTACACACCAAAGCTATCTTCCTTTGCCCTaGACTAAAAAGGTCAAAAAC | + |
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Preference number: 3 (lower is better) Translates to: YLPQIHPILRAEDVTHQSYLPLP*TKKVKN Trigger: GTTTTTGACCTTTTTAGTCAAGGGCAAAGGAAGATA...GCTTTGGTGTGTAACATCTTCAGCTCTCAAAATGGGATGAATTTGAGGAAGATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR TCA 72 bp | AAAAAGTATCAGGAACATAGATTTCTCCTAATGAACTaGACACAACAGAGTCTCTTCCTTTCTGGATTCATA | + |
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Preference number: 3 (lower is better) Translates to: KKYQEHRFLLMN*TQQSLFLSGFI Trigger: TATGAATCCAGAAAGGAAGAGACTCTGTTGTGTTCAGTTCATTAGGAGAAATCTATGTTCCTGATACTTTTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR CCA 90 bp | ACACCTGGTGGTGTTTTACAGCTCCAATTAGCCCCACCAAGGCAATCAGGAACACGCACAGGCAGTTCTTaGAGCACGAGAAGCCCCCGC | + |
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Preference number: 4 (lower is better) Translates to: TPGGVLQLQLAPPRQSGTRTGSS*STRSPR Trigger: GCGGGGGCTTCTCGTGCTCCAAGAACTGCCTGTGCG...TGTTCCTGATTGCCTTGGTGGGGCTAATTGGAGCTGTAAAACACCACCAGGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000220641.2 |
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| CDS-3UTR TCA 90 bp | GTGCCAGACACCAACAACAGTAGATTACAGGGACCACTGAGGGCCAGGGAATATGGGTATACAGCAGGTTaGGCGCGCACAGGCAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: VPDTNNSRLQGPLRAREYGYTAG*ARTGSS Trigger: AGAACTGCCTGTGCGCGCTCAACCTGCTGTATACCC...ATATTCCCTGGCCCTCAGTGGTCCCTGTAATCTACTGTTGTTGGTGTCTGGCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR TCA 90 bp | CTTCCAGCAGCTGACCCTGCTGCTCCCGATTCAGAGCTAAACAAGCACAAGATAGGGTATACAGCAGGTTaGGCGCGCACAGGCAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: LPAADPAAPDSELNKHKIGYTAG*ARTGSS Trigger: AGAACTGCCTGTGCGCGCTCAACCTGCTGTATACCC...TATCTTGTGCTTGTTTAGCTCTGAATCGGGAGCAGCAGGGTCAGCTGCTGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220641.2 |
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| CDS-3UTR GCA 90 bp | GTGCCAGACACCAACAACAGTAGATTACAGGGACCACTGAGGGCCAGGGAATATTCAGCCCAAAGCCGATaGCCCAGGCAGCAATCCCAA | + |
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Preference number: 4 (lower is better) Translates to: VPDTNNSRLQGPLRAREYSAQSR*PRQQSQ Trigger: TTGGGATTGCTGCCTGGGGCATCGGCTTTGGGCTGA...ATATTCCCTGGCCCTCAGTGGTCCCTGTAATCTACTGTTGTTGGTGTCTGGCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR GCA 90 bp | TGGTGGTGTTTTACAGCTCCAATTAGCCCCACCAAGGCAATCAGGAACAGGAAGTCAGCCCAAAGCCGATaGCCCAGGCAGCAATCCCAA | + |
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Preference number: 4 (lower is better) Translates to: WWCFTAPISPTKAIRNRKSAQSR*PRQQSQ Trigger: TTGGGATTGCTGCCTGGGGCATCGGCTTTGGGCTGA...CTTCCTGTTCCTGATTGCCTTGGTGGGGCTAATTGGAGCTGTAAAACACCACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220641.2 |
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| CDS-3UTR CCA 90 bp | AGTGAGATGAAGATCTGGGGTCAAATATCATCTACCCAGGGGTGCCATACACAGCCACCACTCGGAGACTaGAGATCAGCCCAAAGCCGA | + |
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Preference number: 4 (lower is better) Translates to: SEMKIWGQISSTQGCHTQPPLGD*RSAQSR Trigger: TCGGCTTTGGGCTGATCTCCAGTCTCCGAGTGGTGG...CTGTGTATGGCACCCCTGGGTAGATGATATTTGACCCCAGATCTTCATCTCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR CCA 90 bp | AGTGAGATGAAGATCTGGGGTCAAATATCATCTACCCAGGGGTGCCATACACAGGGAAAGCACTCGGGTTaGCGCGAGGGTCTTTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: SEMKIWGQISSTQGCHTQGKHSG*REGLSG Trigger: ACCAGAAAGACCCTCGCGCCAACCCGAGTGCTTTCC...CTGTGTATGGCACCCCTGGGTAGATGATATTTGACCCCAGATCTTCATCTCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR CCA 90 bp | TTTACAGCAGGTAAAAATGCTAAGAAAGGCCACGGTGGACAGTGCCAGACACCACATACTCTCCGATTATaGGGGCGCACGAGGAGCACT | + |
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Preference number: 4 (lower is better) Translates to: FTAGKNAKKGHGGQCQTPHTLRL*GRTRST Trigger: AGTGCTCCTCGTGCGCCCCCATAATCGGAGAGTATG...TGGTGTCTGGCACTGTCCACCGTGGCCTTTCTTAGCATTTTTACCTGCTGTAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR CCA 90 bp | GTGCCAGACACCAACAACAGTAGATTACAGGGACCACTGAGGGCCAGGGAATATCACGAGGAGCACTTCTaGGTACTTTTAGCACAGCTA | + |
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Preference number: 4 (lower is better) Translates to: VPDTNNSRLQGPLRAREYHEEHF*VLLAQL Trigger: TAGCTGTGCTAAAAGTACCCAGAAGTGCTCCTCGTG...ATATTCCCTGGCCCTCAGTGGTCCCTGTAATCTACTGTTGTTGGTGTCTGGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR GCA 90 bp | GTGCCAGACACCAACAACAGTAGATTACAGGGACCACTGAGGGCCAGGGAATATGTCATTTCGAGCACTTaGAGTATTGTTCCATCCGAC | + |
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Preference number: 4 (lower is better) Translates to: VPDTNNSRLQGPLRAREYVISST*SIVPSD Trigger: GTCGGATGGAACAATACTGCAAGTGCTCGAAATGAC...ATATTCCCTGGCCCTCAGTGGTCCCTGTAATCTACTGTTGTTGGTGTCTGGCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR CCA 90 bp | AGTGAGATGAAGATCTGGGGTCAAATATCATCTACCCAGGGGTGCCATACACAGTGGACAGGTGTCATTTaGGTTATAGCTCCGGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: SEMKIWGQISSTQGCHTQWTGVI*VIAPEA Trigger: GGCTTCCGGAGCTATAACCCAAATGACACCTGTCCA...CTGTGTATGGCACCCCTGGGTAGATGATATTTGACCCCAGATCTTCATCTCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR TCA 90 bp | GAGCCACAAACACCATTTCTCTCTCAACTTATGGGAGGTAGTACATTCAAATATAGATGCCCACAGCAATaGCCACACCCACCACTCGGA | + |
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Preference number: 4 (lower is better) Translates to: EPQTPFLSQLMGGSTFKYRCPQQ*PHPPLG Trigger: TCCGAGTGGTGGGTGTGGTCATTGCTGTGGGCATCT...ATATTTGAATGTACTACCTCCCATAAGTTGAGAGAGAAATGGTGTTTGTGGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR TCA 90 bp | TTTAAAGATAACCAAATATCTATTTGTTACATGGGCCTGGGCCAATGTATTGACCCGACTTCCAGCAGCTaGCCCTGCTGCTCCCGATTC | + |
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Preference number: 4 (lower is better) Translates to: FKDNQISICYMGLGQCIDPTSSS*PCCSRF Trigger: GAATCGGGAGCAGCAGGGTCAGCTGCTGGAAGTCGG...GTCAATACATTGGCCCAGGCCCATGTAACAAATAGATATTTGGTTATCTTTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR CCA 90 bp | TTTAAAGATAACCAAATATCTATTTGTTACATGGGCCTGGGCCAATGTATTGACCGCACAGGCAGTTCTTaGAGCACGAGAAGCCCCCGC | + |
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Preference number: 4 (lower is better) Translates to: FKDNQISICYMGLGQCIDRTGSS*STRSPR Trigger: GCGGGGGCTTCTCGTGCTCCAAGAACTGCCTGTGCG...GTCAATACATTGGCCCAGGCCCATGTAACAAATAGATATTTGGTTATCTTTAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR CAA 72 bp | AGCAGTTCAAATTCCTCTGGATGTCATTTCGAGCACTaGCAGTATTGTTCCATCCGACTTCCAGCAGCTGAC | + |
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Preference number: 4 (lower is better) Translates to: SSSNSSGCHFEH*QYCSIRLPAAD Trigger: GTCAGCTGCTGGAAGTCGGATGGAACAATACTGCAAGTGCTCGAAATGACATCCAGAGGAATTTGAACTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220641.2 |
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| CDS-3UTR CCA 90 bp | AGTGAGATGAAGATCTGGGGTCAAATATCATCTACCCAGGGGTGCCATACACAGCAGTTCAAATTCCTCTaGATGTCATTTCGAGCACTT | + |
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Preference number: 4 (lower is better) Translates to: SEMKIWGQISSTQGCHTQQFKFL*MSFRAL Trigger: AAGTGCTCGAAATGACATCCAGAGGAATTTGAACTG...CTGTGTATGGCACCCCTGGGTAGATGATATTTGACCCCAGATCTTCATCTCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR CCA 90 bp | TATCTTCCTCAAATTCATCCCATTTTGAGAGCTGAAGATGTTACACACCAAAGCTTTAGCACAGCTAGCTaGACAGGTGTCATTTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: YLPQIHPILRAEDVTHQSFSTAS*TGVIWV Trigger: AACCCAAATGACACCTGTCCAGCTAGCTGTGCTAAA...GCTTTGGTGTGTAACATCTTCAGCTCTCAAAATGGGATGAATTTGAGGAAGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR CCA 90 bp | GAGCCACAAACACCATTTCTCTCTCAACTTATGGGAGGTAGTACATTCAAATATAATAGCAACACCTGGTaGTGTTTTACAGCTCCAATT | + |
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Preference number: 4 (lower is better) Translates to: EPQTPFLSQLMGGSTFKYNSNTW*CFTAPI Trigger: AATTGGAGCTGTAAAACACCACCAGGTGTTGCTATT...ATATTTGAATGTACTACCTCCCATAAGTTGAGAGAGAAATGGTGTTTGTGGCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| 3UTR CAA 72 bp | AGATATATGCTCTATCTTCCTCAAATTCATCCCATTTaGAGAGCTGAAGATGTTACACACCAAAGCATTTCC | + |
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Preference number: 4 (lower is better) Translates to: RYMLYLPQIHPI*RAEDVTHQSIS Trigger: GGAAATGCTTTGGTGTGTAACATCTTCAGCTCTCAAAATGGGATGAATTTGAGGAAGATAGAGCATATATCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR CCA 90 bp | TTTAAAGATAACCAAATATCTATTTGTTACATGGGCCTGGGCCAATGTATTGACAAAAATAGCAACACCTaGTGGTGTTTTACAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: FKDNQISICYMGLGQCIDKNSNT*WCFTAP Trigger: TGGAGCTGTAAAACACCACCAGGTGTTGCTATTTTT...GTCAATACATTGGCCCAGGCCCATGTAACAAATAGATATTTGGTTATCTTTAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS TCA 90 bp | TTAGCCCCACCAAGGCAATCAGGAACAGGAAGATGCCCACAGCAATaGCCACACCCACCACTCGGAGACTGGAGATCAGCCCAAAGCCGA | + |
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Preference number: 5 (lower is better) Translates to: LAPPRQSGTGRCPQQ*PHPPLGDWRSAQSR Trigger: TCGGCTTTGGGCTGATCTCCAGTCTCCGAGTGGTGGGTGTGGTCATTGCTGTGGGCATCTTCCTGTTCCTGATTGCCTTGGTGGGGCTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020896.17 ENSMUST00000222584.2 |
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| CDS CCA 90 bp | GGGGGCGCACGAGGAGCACTTCTGGGTACTTTTAGCACAGCTAGCTaGACAGGTGTCATTTGGGTTATAGCTCCGGAAGCCACAGCAGTT | + |
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Preference number: 5 (lower is better) Translates to: GGARGALLGTFSTAS*TGVIWVIAPEATAV Trigger: AACTGCTGTGGCTTCCGGAGCTATAACCCAAATGACACCTGTCCAGCTAGCTGTGCTAAAAGTACCCAGAAGTGCTCCTCGTGCGCCCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR CAA 90 bp | AGTGAGATGAAGATCTGGGGTCAAATATCATCTACCCAGGGGTGCCATACACAGGCGCACAGGCAGTTCTaGGAGCACGAGAAGCCCCCG | + |
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Preference number: 5 (lower is better) Translates to: SEMKIWGQISSTQGCHTQAHRQF*EHEKPP Trigger: CGGGGGCTTCTCGTGCTCCAAGAACTGCCTGTGCGC...CTGTGTATGGCACCCCTGGGTAGATGATATTTGACCCCAGATCTTCATCTCACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS CCA 90 bp | AATCCCAATGAGCAGCAGGCTGACCAGTTCTGTAGTGGTCCACAGTaGTCCACACTTGGAATCCCAGGACTTCCGACGAAGAGGCTAGAG | + |
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Preference number: 5 (lower is better) Translates to: NPNEQQADQFCSGPQ*STLGIPGLPTKRLE Trigger: CTCTAGCCTCTTCGTCGGAAGTCCTGGGATTCCAAGTGTGGACCACTGTGGACCACTACAGAACTGGTCAGCCTGCTGCTCATTGGGATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220641.2 |
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| CDS-3UTR CAA 90 bp | CACAGCAGTTCAAATTCCTCTGGATGTCATTTCGAGCACTTGCAGTATTGTTCCGCGCACAGGCAGTTCTaGGAGCACGAGAAGCCCCCG | + |
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Preference number: 5 (lower is better) Translates to: HSSSNSSGCHFEHLQYCSAHRQF*EHEKPP Trigger: CGGGGGCTTCTCGTGCTCCAAGAACTGCCTGTGCGC...GGAACAATACTGCAAGTGCTCGAAATGACATCCAGAGGAATTTGAACTGCTGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000220641.2 |
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| CDS-3UTR CAA 90 bp | CTGGACAGGTGTCATTTGGGTTATAGCTCCGGAAGCCACAGCAGTTCAAATTCCAGGGTATACAGCAGGTaGAGCGCGCACAGGCAGTTC | + |
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Preference number: 5 (lower is better) Translates to: LDRCHLGYSSGSHSSSNSRVYSR*SAHRQF Trigger: GAACTGCCTGTGCGCGCTCAACCTGCTGTATACCCT...GGAATTTGAACTGCTGTGGCTTCCGGAGCTATAACCCAAATGACACCTGTCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220641.2 |
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| CDS-3UTR CAA 90 bp | TTTACAGCAGGTAAAAATGCTAAGAAAGGCCACGGTGGACAGTGCCAGACACCAAGGAAAGCACTCGGGTaGGCGCGAGGGTCTTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: FTAGKNAKKGHGGQCQTPRKALG*ARGSFW Trigger: CCAGAAAGACCCTCGCGCCAACCCGAGTGCTTTCCT...TGGTGTCTGGCACTGTCCACCGTGGCCTTTCTTAGCATTTTTACCTGCTGTAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS CCA 90 bp | TCTCCAGCATACTCTCCGATTATGGGGGCGCACGAGGAGCACTTCTaGGTACTTTTAGCACAGCTAGCTGGACAGGTGTCATTTGGGTTA | + |
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Preference number: 5 (lower is better) Translates to: SPAYSPIMGAHEEHF*VLLAQLAGQVSFGL Trigger: TAACCCAAATGACACCTGTCCAGCTAGCTGTGCTAAAAGTACCCAGAAGTGCTCCTCGTGCGCCCCCATAATCGGAGAGTATGCTGGAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS CCA 90 bp | GCACTTCTGGGTACTTTTAGCACAGCTAGCTGGACAGGTGTCATTTaGGTTATAGCTCCGGAAGCCACAGCAGTTCAAATTCCTCTGGAT | + |
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Preference number: 5 (lower is better) Translates to: ALLGTFSTASWTGVI*VIAPEATAVQIPLD Trigger: ATCCAGAGGAATTTGAACTGCTGTGGCTTCCGGAGCTATAACCCAAATGACACCTGTCCAGCTAGCTGTGCTAAAAGTACCCAGAAGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR CAA 90 bp | TATCTTCCTCAAATTCATCCCATTTTGAGAGCTGAAGATGTTACACACCAAAGCAGGGTATACAGCAGGTaGAGCGCGCACAGGCAGTTC | + |
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Preference number: 5 (lower is better) Translates to: YLPQIHPILRAEDVTHQSRVYSR*SAHRQF Trigger: GAACTGCCTGTGCGCGCTCAACCTGCTGTATACCCT...GCTTTGGTGTGTAACATCTTCAGCTCTCAAAATGGGATGAATTTGAGGAAGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR CAA 90 bp | TTTACAGCAGGTAAAAATGCTAAGAAAGGCCACGGTGGACAGTGCCAGACACCATGTCATTTCGAGCACTaGCAGTATTGTTCCATCCGA | + |
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Preference number: 5 (lower is better) Translates to: FTAGKNAKKGHGGQCQTPCHFEH*QYCSIR Trigger: TCGGATGGAACAATACTGCAAGTGCTCGAAATGACA...TGGTGTCTGGCACTGTCCACCGTGGCCTTTCTTAGCATTTTTACCTGCTGTAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS-3UTR CAA 90 bp | TATCTTCCTCAAATTCATCCCATTTTGAGAGCTGAAGATGTTACACACCAAAGCCGAGCACTTGCAGTATaGTTCCATCCGACTTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: YLPQIHPILRAEDVTHQSRALAV*FHPTSS Trigger: GCTGGAAGTCGGATGGAACAATACTGCAAGTGCTCG...GCTTTGGTGTGTAACATCTTCAGCTCTCAAAATGGGATGAATTTGAGGAAGATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020896.17 |
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| CDS CAA 90 bp | ACGAAGAGGCTAGAGCTGGAGGCCGTCCTCAGGGTATACAGCAGGTaGAGCGCGCACAGGCAGTTCTTGGAGCACGAGAAGCCCCCGCAC | + |
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Preference number: 6 (lower is better) Translates to: TKRLELEAVLRVYSR*SAHRQFLEHEKPPH Trigger: GTGCGGGGGCTTCTCGTGCTCCAAGAACTGCCTGTGCGCGCTCAACCTGCTGTATACCCTGAGGACGGCCTCCAGCTCTAGCCTCTTCGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000220641.2 |
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| CDS CAA 72 bp | CTAGAGCTGGAGGCCGTCCTCAGGGTATACAGCAGGTaGAGCGCGCACAGGCAGTTCTTGGAGCACGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: LELEAVLRVYSR*SAHRQFLEHEK Trigger: CTTCTCGTGCTCCAAGAACTGCCTGTGCGCGCTCAACCTGCTGTATACCCTGAGGACGGCCTCCAGCTCTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220641.2 |
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| CDS CCA 72 bp | GAGCAGCAGGCTGACCAGTTCTGTAGTGGTCCACAGTaGTCCACACTTGGAATCCCAGGACTTCCGACGAAG | + |
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Preference number: 6 (lower is better) Translates to: EQQADQFCSGPQ*STLGIPGLPTK Trigger: CTTCGTCGGAAGTCCTGGGATTCCAAGTGTGGACCACTGTGGACCACTACAGAACTGGTCAGCCTGCTGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220641.2 |
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