Pregenerated sensors for TSPAN12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029669Ensembl transcript IDs: ENSMUST00000031678.10, ENSMUST00000120965.8, ENSMUST00000123116.8, ENSMUST00000134635.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAACTGGGTTCGGCATTTTaGAGGGCACCAATTATTGTC | + |
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Preference number: 2 (lower is better) Translates to: FRQPDLQRFLCVKLVISKLGSAF*RAPIIV Trigger: GACAATAATTGGTGCCCTTCAAAATGCCGAACCCAG...TTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR-3UTR TCA 90 bp | TTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAAGGAACTGAAATCTACTaGATTATACAGACACGGCAC | + |
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Preference number: 2 (lower is better) Translates to: FRQPDLQRFLCVKLVISKGTEIY*IIQTRH Trigger: GTGCCGTGTCTGTATAATTCAGTAGATTTCAGTTCC...TTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR-3UTR TCA 90 bp | ACCATCAGAACAATACATCACCAGCTAATAAAGGTCTTTAGCACTAAATCCCTACTGGGTTCGGCATTTTaGAGGGCACCAATTATTGTC | + |
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Preference number: 2 (lower is better) Translates to: TIRTIHHQLIKVFSTKSLLGSAF*RAPIIV Trigger: GACAATAATTGGTGCCCTTCAAAATGCCGAACCCAG...TAGGGATTTAGTGCTAAAGACCTTTATTAGCTGGTGATGTATTGTTCTGATGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR-3UTR GCA 90 bp | TTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAAGAATGGATGCAGAAATaGTGGTCAAACTGTATCACT | + |
|
Preference number: 2 (lower is better) Translates to: FRQPDLQRFLCVKLVISKEWMQK*WSNCIT Trigger: AGTGATACAGTTTGACCAGCATTTCTGCATCCATTC...TTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR-3UTR CCA 90 bp | TTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAAGTTCATTTCTGTGAATaGATGCAGAAATGCTGGTCA | + |
|
Preference number: 2 (lower is better) Translates to: FRQPDLQRFLCVKLVISKVHFCE*MQKCWS Trigger: TGACCAGCATTTCTGCATCCATTCACAGAAATGAAC...TTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR CAA 90 bp | AGAAAGAAAGCACACACAGTTGTTATAATGTCTGGGTTCGGCATTTaGAAGGGCACCAATTATTGTCTGTGTATTACCATGTGGAACCTT | + |
|
Preference number: 2 (lower is better) Translates to: RKKAHTVVIMSGFGI*KGTNYCLCITMWNL Trigger: AAGGTTCCACATGGTAATACACAGACAATAATTGGTGCCCTTCAAAATGCCGAACCCAGACATTATAACAACTGTGTGTGCTTTCTTTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR-3UTR TCA 90 bp | TTAATACTTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATAGTCCCACAAGTTTGTaGTTTCCTTCTTTGACATTC | + |
|
Preference number: 2 (lower is better) Translates to: LILPAARLTEIPMCQTGNSPTSL*FPSLTF Trigger: GAATGTCAAAGAAGGAAATCACAAACTTGTGGGACT...ATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAAGTATTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR-3UTR TCA 90 bp | ACCATCAGAACAATACATCACCAGCTAATAAAGGTCTTTAGCACTAAATCCCTAGACGGTTCATTTCTGTaGATGGATGCAGAAATGCTG | + |
|
Preference number: 2 (lower is better) Translates to: TIRTIHHQLIKVFSTKSLDGSFL*MDAEML Trigger: CAGCATTTCTGCATCCATTCACAGAAATGAACCGTC...TAGGGATTTAGTGCTAAAGACCTTTATTAGCTGGTGATGTATTGTTCTGATGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR-3UTR GCA 90 bp | ACCATCAGAACAATACATCACCAGCTAATAAAGGTCTTTAGCACTAAATCCCTATCATATCAGCTCCAGTaGCACCATGACGGTTCATTT | + |
|
Preference number: 2 (lower is better) Translates to: TIRTIHHQLIKVFSTKSLSYQLQ*HHDGSF Trigger: AAATGAACCGTCATGGTGGCACTGGAGCTGATATGA...TAGGGATTTAGTGCTAAAGACCTTTATTAGCTGGTGATGTATTGTTCTGATGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR-3UTR GCA 90 bp | CAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAAATTAGTTCATATCAGCTCCAGTaGCACCATGACGGTTCATTT | + |
|
Preference number: 2 (lower is better) Translates to: QPDLQRFLCVKLVISKISSYQLQ*HHDGSF Trigger: AAATGAACCGTCATGGTGGCACTGGAGCTGATATGA...ACTAATTTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR-3UTR GCA 90 bp | TTAATACTTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATATTTCTGTGAATGGATaGAGAAATGCTGGTCAAACT | + |
|
Preference number: 2 (lower is better) Translates to: LILPAARLTEIPMCQTGNISVNG*RNAGQT Trigger: AGTTTGACCAGCATTTCTGCATCCATTCACAGAAAT...ATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAAGTATTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR-3UTR CCA 90 bp | TTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAACTGTGTATTACCATGTaGAACCTTTGTTTTAAAGAG | + |
|
Preference number: 2 (lower is better) Translates to: FRQPDLQRFLCVKLVISKLCITM*NLCFKE Trigger: CTCTTTAAAACAAAGGTTCCACATGGTAATACACAG...TTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR-3UTR TCA 90 bp | ACCATCAGAACAATACATCACCAGCTAATAAAGGTCTTTAGCACTAAATCCCTAAGTCCCACAAGTTTGTaGTTTCCTTCTTTGACATTC | + |
|
Preference number: 2 (lower is better) Translates to: TIRTIHHQLIKVFSTKSLSPTSL*FPSLTF Trigger: GAATGTCAAAGAAGGAAATCACAAACTTGTGGGACT...TAGGGATTTAGTGCTAAAGACCTTTATTAGCTGGTGATGTATTGTTCTGATGGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR-3UTR CCA 90 bp | CAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAAATTAGTGTTCATTTCTGTGAATaGATGCAGAAATGCTGGTCA | + |
|
Preference number: 2 (lower is better) Translates to: QPDLQRFLCVKLVISKISVHFCE*MQKCWS Trigger: TGACCAGCATTTCTGCATCCATTCACAGAAATGAAC...ACTAATTTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR-3UTR GCA 90 bp | CAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAAATTAGTATTTCTGTGAATGGATaGAGAAATGCTGGTCAAACT | + |
|
Preference number: 2 (lower is better) Translates to: QPDLQRFLCVKLVISKISISVNG*RNAGQT Trigger: AGTTTGACCAGCATTTCTGCATCCATTCACAGAAAT...ACTAATTTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR-3UTR CCA 90 bp | ACCATCAGAACAATACATCACCAGCTAATAAAGGTCTTTAGCACTAAATCCCTACTGTGTATTACCATGTaGAACCTTTGTTTTAAAGAG | + |
|
Preference number: 2 (lower is better) Translates to: TIRTIHHQLIKVFSTKSLLCITM*NLCFKE Trigger: CTCTTTAAAACAAAGGTTCCACATGGTAATACACAG...TAGGGATTTAGTGCTAAAGACCTTTATTAGCTGGTGATGTATTGTTCTGATGGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR-3UTR CAA 90 bp | TCCAGTGCCACCATGACGGTTCATTTCTGTGAATGGATGCAGAAATGCTGGTCAGAAGGGCACCAATTATaGTCTGTGTATTACCATGTG | + |
|
Preference number: 3 (lower is better) Translates to: SSATMTVHFCEWMQKCWSEGHQL*SVYYHV Trigger: CACATGGTAATACACAGACAATAATTGGTGCCCTTC...TGACCAGCATTTCTGCATCCATTCACAGAAATGAACCGTCATGGTGGCACTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR TCA 72 bp | TATCAGCTCCAGTGCCACCATGACGGTTCATTTCTGTaGATGGATGCAGAAATGCTGGTCAAACTGTATCAC | + |
|
Preference number: 3 (lower is better) Translates to: YQLQCHHDGSFL*MDAEMLVKLYH Trigger: GTGATACAGTTTGACCAGCATTTCTGCATCCATTCACAGAAATGAACCGTCATGGTGGCACTGGAGCTGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR TCA 72 bp | AGTCAGTTAACCTTCATATCAGCTCCAGTGCCACCATaGCGGTTCATTTCTGTGAATGGATGCAGAAATGCT | + |
|
Preference number: 3 (lower is better) Translates to: SQLTFISAPVPP*RFISVNGCRNA Trigger: AGCATTTCTGCATCCATTCACAGAAATGAACCGTCATGGTGGCACTGGAGCTGATATGAAGGTTAACTGACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
||
| 3UTR-3UTR CAA 90 bp | ACCATCAGAACAATACATCACCAGCTAATAAAGGTCTTTAGCACTAAATCCCTAGAAGGGCACCAATTATaGTCTGTGTATTACCATGTG | + |
|
Preference number: 3 (lower is better) Translates to: TIRTIHHQLIKVFSTKSLEGHQL*SVYYHV Trigger: CACATGGTAATACACAGACAATAATTGGTGCCCTTC...TAGGGATTTAGTGCTAAAGACCTTTATTAGCTGGTGATGTATTGTTCTGATGGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR CCA 72 bp | GAAAAGAAAGAAAGCACACACAGTTGTTATAATGTCTaGGTTCGGCATTTTGAAGGGCACCAATTATTGTCT | + |
|
Preference number: 3 (lower is better) Translates to: EKKESTHSCYNV*VRHFEGHQLLS Trigger: AGACAATAATTGGTGCCCTTCAAAATGCCGAACCCAGACATTATAACAACTGTGTGTGCTTTCTTTCTTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR TCA 90 bp | TCCAGTGCCACCATGACGGTTCATTTCTGTGAATGGATGCAGAAATGCTGGTCAACCCTGGGAACTCCCTaGCACAGCAGGAGTCGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: SSATMTVHFCEWMQKCWSTLGTP*HSRSRE Trigger: CTCCCGACTCCTGCTGTGTCAGGGAGTTCCCAGGGT...TGACCAGCATTTCTGCATCCATTCACAGAAATGAACCGTCATGGTGGCACTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031678.10 |
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| CDS-3UTR TCA 90 bp | TTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAAACCAAAAGAGCAGGTTaGGGGCGTAGAGCAAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: FRQPDLQRFLCVKLVISKTKRAG*GRRASS Trigger: GCTGCTTGCTCTACGCCCTCAACCTGCTCTTTTGGT...TTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR GCA 90 bp | TCCAGTGCCACCATGACGGTTCATTTCTGTGAATGGATGCAGAAATGCTGGTCACATCCAAGCAGAAACTaGCAAGACACTGATGGACAT | + |
|
Preference number: 4 (lower is better) Translates to: SSATMTVHFCEWMQKCWSHPSRN*QDTDGH Trigger: ATGTCCATCAGTGTCTTGGCAGTTTCTGCTTGGATG...TGACCAGCATTTCTGCATCCATTCACAGAAATGAACCGTCATGGTGGCACTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR TCA 90 bp | TTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAATTTCCAACCAGTCAGTaGAGTACACCACTCCACAGC | + |
|
Preference number: 4 (lower is better) Translates to: FRQPDLQRFLCVKLVISKFPTSQ*STPLHS Trigger: GCTGTGGAGTGGTGTACTTCACTGACTGGTTGGAAA...TTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031678.10 |
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| CDS-3UTR TCA 90 bp | CAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAAATTAGTCTGAGATCTTCCTGGTaGGCCTGCTTGGAGCACCCT | + |
|
Preference number: 4 (lower is better) Translates to: QPDLQRFLCVKLVISKISLRSSW*ACLEHP Trigger: AGGGTGCTCCAAGCAGGCTCACCAGGAAGATCTCAG...ACTAATTTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031678.10 |
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| CDS-3UTR TCA 90 bp | TTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAAGTTCTACACAGAAGATaGCGAGTAACGTTCCGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: FRQPDLQRFLCVKLVISKVLHRR*RVTFRS Trigger: ACTTCGGAACGTTACTCGTCATCTTCTGTGTAGAAC...TTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR TCA 90 bp | TTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAATTCCACAGAATGACATaGCAAGTGCTGAGACGTATC | + |
|
Preference number: 4 (lower is better) Translates to: FRQPDLQRFLCVKLVISKFHRMT*QVLRRI Trigger: GATACGTCTCAGCACTTGTCATGTCATTCTGTGGAA...TTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR GCA 90 bp | TTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAACGTTCCGAAGTACCATaGAAGAAGCAACAGATTTCT | + |
|
Preference number: 4 (lower is better) Translates to: FRQPDLQRFLCVKLVISKRSEVP*KKQQIS Trigger: AGAAATCTGTTGCTTCTTGCATGGTACTTCGGAACG...TTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR CCA 90 bp | TCCAGTGCCACCATGACGGTTCATTTCTGTGAATGGATGCAGAAATGCTGGTCAGAACTTGCAATTGTTTaGTTCCTCTCAAAAAGGAAT | + |
|
Preference number: 4 (lower is better) Translates to: SSATMTVHFCEWMQKCWSELAIV*FLSKRN Trigger: ATTCCTTTTTGAGAGGAACCAAACAATTGCAAGTTC...TGACCAGCATTTCTGCATCCATTCACAGAAATGAACCGTCATGGTGGCACTGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| 3UTR CAA 72 bp | GCACACACAGTTGTTATAATGTCTGGGTTCGGCATTTaGAAGGGCACCAATTATTGTCTGTGTATTACCATG | + |
|
Preference number: 4 (lower is better) Translates to: AHTVVIMSGFGI*KGTNYCLCITM Trigger: CATGGTAATACACAGACAATAATTGGTGCCCTTCAAAATGCCGAACCCAGACATTATAACAACTGTGTGTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR TCA 90 bp | TTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAAAAACTGCCAAGACACTaGTGGACATTAACCAAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: FRQPDLQRFLCVKLVISKKLPRH*WTLTKR Trigger: TCTTTTGGTTAATGTCCATCAGTGTCTTGGCAGTTT...TTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAA 41% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR GCA 90 bp | TTAATACTTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATCGTTCCGAAGTACCATaGAAGAAGCAACAGATTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LILPAARLTEIPMCQTGNRSEVP*KKQQIS Trigger: AGAAATCTGTTGCTTCTTGCATGGTACTTCGGAACG...ATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAAGTATTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR TCA 90 bp | CAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAAATTAGTGTTCTACACAGAAGATaGCGAGTAACGTTCCGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: QPDLQRFLCVKLVISKISVLHRR*RVTFRS Trigger: ACTTCGGAACGTTACTCGTCATCTTCTGTGTAGAAC...ACTAATTTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR TCA 90 bp | CAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAAATTAGTCAAAGTAACCATATCTaGCCACTGTACTGGCACCAT | + |
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Preference number: 4 (lower is better) Translates to: QPDLQRFLCVKLVISKISQSNHI*PLYWHH Trigger: ATGGTGCCAGTACAGTGGTCAGATATGGTTACTTTG...ACTAATTTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR TCA 90 bp | ACCATCAGAACAATACATCACCAGCTAATAAAGGTCTTTAGCACTAAATCCCTATTCCACAGAATGACATaGCAAGTGCTGAGACGTATC | + |
|
Preference number: 4 (lower is better) Translates to: TIRTIHHQLIKVFSTKSLFHRMT*QVLRRI Trigger: GATACGTCTCAGCACTTGTCATGTCATTCTGTGGAA...TAGGGATTTAGTGCTAAAGACCTTTATTAGCTGGTGATGTATTGTTCTGATGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR GCA 90 bp | ACCATCAGAACAATACATCACCAGCTAATAAAGGTCTTTAGCACTAAATCCCTACATCCAAGCAGAAACTaGCAAGACACTGATGGACAT | + |
|
Preference number: 4 (lower is better) Translates to: TIRTIHHQLIKVFSTKSLHPSRN*QDTDGH Trigger: ATGTCCATCAGTGTCTTGGCAGTTTCTGCTTGGATG...TAGGGATTTAGTGCTAAAGACCTTTATTAGCTGGTGATGTATTGTTCTGATGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR TCA 90 bp | TTAATACTTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTCTCAAAATGTGTATTaGAGCTGTTTGCCATTGATG | + |
|
Preference number: 4 (lower is better) Translates to: LILPAARLTEIPMCQTGNSQNVY*SCLPLM Trigger: CATCAATGGCAAACAGCTTCAATACACATTTTGAGA...ATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAAGTATTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR TCA 90 bp | ACCATCAGAACAATACATCACCAGCTAATAAAGGTCTTTAGCACTAAATCCCTAAAACTGCCAAGACACTaGTGGACATTAACCAAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: TIRTIHHQLIKVFSTKSLKLPRH*WTLTKR Trigger: TCTTTTGGTTAATGTCCATCAGTGTCTTGGCAGTTT...TAGGGATTTAGTGCTAAAGACCTTTATTAGCTGGTGATGTATTGTTCTGATGGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR TCA 90 bp | ACCATCAGAACAATACATCACCAGCTAATAAAGGTCTTTAGCACTAAATCCCTATCTCAAAATGTGTATTaGAGCTGTTTGCCATTGATG | + |
|
Preference number: 4 (lower is better) Translates to: TIRTIHHQLIKVFSTKSLSQNVY*SCLPLM Trigger: CATCAATGGCAAACAGCTTCAATACACATTTTGAGA...TAGGGATTTAGTGCTAAAGACCTTTATTAGCTGGTGATGTATTGTTCTGATGGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR GCA 90 bp | ACCATCAGAACAATACATCACCAGCTAATAAAGGTCTTTAGCACTAAATCCCTATTTGCCATTGATGTATaGTCAAAGATCCTTGAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: TIRTIHHQLIKVFSTKSLFAIDV*SKILER Trigger: TCTTTCAAGGATCTTTGAGCATACATCAATGGCAAA...TAGGGATTTAGTGCTAAAGACCTTTATTAGCTGGTGATGTATTGTTCTGATGGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR CCA 90 bp | ACCATCAGAACAATACATCACCAGCTAATAAAGGTCTTTAGCACTAAATCCCTAGAACTTGCAATTGTTTaGTTCCTCTCAAAAAGGAAT | + |
|
Preference number: 4 (lower is better) Translates to: TIRTIHHQLIKVFSTKSLELAIV*FLSKRN Trigger: ATTCCTTTTTGAGAGGAACCAAACAATTGCAAGTTC...TAGGGATTTAGTGCTAAAGACCTTTATTAGCTGGTGATGTATTGTTCTGATGGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS TCA 90 bp | CCTGCTCGTATGTCCACACACCGCAAGCCAGTTCTACACAGAAGATaGCGAGTAACGTTCCGAAGTACCATGCAAGAAGCAACAGATTTC | + |
|
Preference number: 5 (lower is better) Translates to: PARMSTHRKPVLHRR*RVTFRSTMQEATDF Trigger: GAAATCTGTTGCTTCTTGCATGGTACTTCGGAACGTTACTCGTCATCTTCTGTGTAGAACTGGCTTGCGGTGTGTGGACATACGAGCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 ENSMUST00000123116.8 ENSMUST00000134635.2 |
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| CDS-3UTR CAA 90 bp | TCCAGTGCCACCATGACGGTTCATTTCTGTGAATGGATGCAGAAATGCTGGTCAAGAACTTGCAATTGTTaGGTTCCTCTCAAAAAGGAA | + |
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Preference number: 5 (lower is better) Translates to: SSATMTVHFCEWMQKCWSRTCNC*VPLKKE Trigger: TTCCTTTTTGAGAGGAACCAAACAATTGCAAGTTCT...TGACCAGCATTTCTGCATCCATTCACAGAAATGAACCGTCATGGTGGCACTGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR CAA 90 bp | TTCCGGCAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAAAATCATGGCCAGGATTaGTGTCACACCAATGGAGAT | + |
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Preference number: 5 (lower is better) Translates to: FRQPDLQRFLCVKLVISKNHGQD*CHTNGD Trigger: ATCTCCATTGGTGTGACACAAATCCTGGCCATGATT...TTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTGCCGGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS-3UTR CAA 90 bp | CAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAAATTAGTCTTCCCACAACCCTCTaGGTAAAGGTCACTGAGATC | + |
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Preference number: 5 (lower is better) Translates to: QPDLQRFLCVKLVISKISLPTTL*VKVTEI Trigger: GATCTCAGTGACCTTTACCAAGAGGGTTGTGGGAAG...ACTAATTTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031678.10 |
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| CDS-3UTR CAA 90 bp | CAGCCAGACTTACAGAGATTCCTATGTGTCAAACTGGTAATTTCCAAAATTAGTAGAACTTGCAATTGTTaGGTTCCTCTCAAAAAGGAA | + |
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Preference number: 5 (lower is better) Translates to: QPDLQRFLCVKLVISKISRTCNC*VPLKKE Trigger: TTCCTTTTTGAGAGGAACCAAACAATTGCAAGTTCT...ACTAATTTTGGAAATTACCAGTTTGACACATAGGAATCTCTGTAAGTCTGGCTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 |
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| CDS TCA 72 bp | ATGTCCACACACCGCAAGCCAGTTCTACACAGAAGATaGCGAGTAACGTTCCGAAGTACCATGCAAGAAGCA | + |
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Preference number: 6 (lower is better) Translates to: MSTHRKPVLHRR*RVTFRSTMQEA Trigger: TGCTTCTTGCATGGTACTTCGGAACGTTACTCGTCATCTTCTGTGTAGAACTGGCTTGCGGTGTGTGGACAT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031678.10 ENSMUST00000120965.8 ENSMUST00000123116.8 ENSMUST00000134635.2 |
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