Pregenerated sensors for TSPAN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028699Ensembl transcript IDs: ENSMUST00000030465.10, ENSMUST00000143426.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTCACCCCACCAGTGGAAGAACAAGGCAGACAAAGCCCACGAGGTaGTCCCTATTTAGCCCAAAGTCCCTGAGCAGCAAAGGCAAATCC | + |
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Preference number: 1 (lower is better) Translates to: PHPTSGRTRQTKPTR*SLFSPKSLSSKGKS Trigger: GGATTTGCCTTTGCTGCTCAGGGACTTTGGGCTAAATAGGGACCACCTCGTGGGCTTTGTCTGCCTTGTTCTTCCACTGGTGGGGTGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR GCA 90 bp | CCCTTCCCTCCCACCCTGCTGAGTCTCCAGCTTCACAGAAGTCAGTaGAACTTAGGCAATCAGGACCCATCTCTCCAAGCATATACAGGT | + |
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Preference number: 1 (lower is better) Translates to: PFPPTLLSLQLHRSQ*NLGNQDPSLQAYTG Trigger: ACCTGTATATGCTTGGAGAGATGGGTCCTGATTGCCTAAGTTGCACTGACTTCTGTGAAGCTGGAGACTCAGCAGGGTGGGAGGGAAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR TCA 90 bp | TCATTGGTTTATAGGTTCCAAAATGCCTTCTATACATTCCTTCAATaGCTTTACAGTGTTAGAAAATGCCCAGGCTGTAAGTGCCTTCAT | + |
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Preference number: 1 (lower is better) Translates to: SLVYRFQNAFYTFLQ*LYSVRKCPGCKCLH Trigger: ATGAAGGCACTTACAGCCTGGGCATTTTCTAACACTGTAAAGTCATTGAAGGAATGTATAGAAGGCATTTTGGAACCTATAAACCAATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR-3UTR TCA 90 bp | TCTCCCTCCCAGGCTGGAACCAGATACCTACGTCCCTTCCCTCCCACCCTGCTGTTCCTGGTTTCCATGTaGCGGCAGCAAGTCAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: SPSQAGTRYLRPFPPTLLFLVSM*RQQVRR Trigger: CCTCCTGACTTGCTGCCGTCACATGGAAACCAGGAA...CAGCAGGGTGGGAGGGAAGGGACGTAGGTATCTGGTTCCAGCCTGGGAGGGAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR-3UTR CCA 90 bp | TTAGGGCACAAGTCTGGAATTGCTGAAGAACTTGTGTCCCCCTTTGCTGCCCCCCCCTCACCCCACCAGTaGAAGAACAAGGCAGACAAA | + |
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Preference number: 2 (lower is better) Translates to: LGHKSGIAEELVSPFAAPPSPHQ*KNKADK Trigger: TTTGTCTGCCTTGTTCTTCCACTGGTGGGGTGAGGG...GGGGGCAGCAAAGGGGGACACAAGTTCTTCAGCAATTCCAGACTTGTGCCCTAA 53% GC, longest homopolymer 8 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR-3UTR TCA 90 bp | ATCAAGAGTCTCAGGAAATGGGCAGACTTGGCTGCCTCTGAGACTGGGACCGATCCATTCCAGCCCAAATaGCATTTCATCTCCACCCAT | + |
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Preference number: 2 (lower is better) Translates to: IKSLRKWADLAASETGTDPFQPK*HFISTH Trigger: ATGGGTGGAGATGAAATGTCATTTGGGCTGGAATGG...ATCGGTCCCAGTCTCAGAGGCAGCCAAGTCTGCCCATTTCCTGAGACTCTTGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR-3UTR CCA 90 bp | AACGCAGACCAATGCAGCTCTCCCTTCCTCAGTGTACTCTTGGACACTTTTACTGGAAATGGGCAGACTTaGCTGCCTCTGAGACTGGGA | + |
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Preference number: 2 (lower is better) Translates to: NADQCSSPFLSVLLDTFTGNGQT*LPLRLG Trigger: TCCCAGTCTCAGAGGCAGCCAAGTCTGCCCATTTCC...AGTAAAAGTGTCCAAGAGTACACTGAGGAAGGGAGAGCTGCATTGGTCTGCGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR CAA 90 bp | AAAGGCAAATCCATTCCAGCCCAAATGACATTTCATCTCCACCCATaGCTGCTGCTTAGCTGTGCCAAGTGCCTCTTCCTGGTTTCCATG | + |
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Preference number: 2 (lower is better) Translates to: KGKSIPAQMTFHLHP*LLLSCAKCLFLVSM Trigger: CATGGAAACCAGGAAGAGGCACTTGGCACAGCTAAGCAGCAGCAATGGGTGGAGATGAAATGTCATTTGGGCTGGAATGGATTTGCCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR-3UTR GCA 90 bp | CCCAAAGTCCCTGAGCAGCAAAGGCAAATCCATTCCAGCCCAAATGACATTTCACTTAGCTGTGCCAAGTaGCTCTTCCTGGTTTCCATG | + |
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Preference number: 2 (lower is better) Translates to: PKVPEQQRQIHSSPNDISLSCAK*LFLVSM Trigger: CATGGAAACCAGGAAGAGGCACTTGGCACAGCTAAG...TGAAATGTCATTTGGGCTGGAATGGATTTGCCTTTGCTGCTCAGGGACTTTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR-3UTR CCA 90 bp | ACTTGGCACAAGCTTGTTATTTTCATAGCTTTCCAGTCTAGTGCCCTTCACCAGCCAAGTGCCTCTTCCTaGTTTCCATGTGACGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: TWHKLVIFIAFQSSALHQPSASS*FPCDGS Trigger: GCTGCCGTCACATGGAAACCAGGAAGAGGCACTTGG...CTGGTGAAGGGCACTAGACTGGAAAGCTATGAAAATAACAAGCTTGTGCCAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR CCA 72 bp | GTGTACTCTTGGACACTTTTACTCTCCCTCCCAGGCTaGAACCAGATACCTACGTCCCTTCCCTCCCACCCT | + |
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Preference number: 3 (lower is better) Translates to: VYSWTLLLSLPG*NQIPTSLPSHP Trigger: AGGGTGGGAGGGAAGGGACGTAGGTATCTGGTTCCAGCCTGGGAGGGAGAGTAAAAGTGTCCAAGAGTACAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR GCA 72 bp | CCCACCCTGCTGAGTCTCCAGCTTCACAGAAGTCAGTaGAACTTAGGCAATCAGGACCCATCTCTCCAAGCA | + |
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Preference number: 3 (lower is better) Translates to: PTLLSLQLHRSQ*NLGNQDPSLQA Trigger: TGCTTGGAGAGATGGGTCCTGATTGCCTAAGTTGCACTGACTTCTGTGAAGCTGGAGACTCAGCAGGGTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR CCA 72 bp | CATTGCTGCTGCTTAGCTGTGCCAAGTGCCTCTTCCTaGTTTCCATGTGACGGCAGCAAGTCAGGAGGAAGT | + |
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Preference number: 3 (lower is better) Translates to: HCCCLAVPSASS*FPCDGSKSGGS Trigger: ACTTCCTCCTGACTTGCTGCCGTCACATGGAAACCAGGAAGAGGCACTTGGCACAGCTAAGCAGCAGCAATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR CCA 72 bp | CAGACCAATGCAGCTCTCCCTTCCTCAGTGTACTCTTaGACACTTTTACTCTCCCTCCCAGGCTGGAACCAG | + |
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Preference number: 3 (lower is better) Translates to: QTNAALPSSVYS*TLLLSLPGWNQ Trigger: CTGGTTCCAGCCTGGGAGGGAGAGTAAAAGTGTCCAAGAGTACACTGAGGAAGGGAGAGCTGCATTGGTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR CCA 72 bp | ACCAGTGGAAGAACAAGGCAGACAAAGCCCACGAGGTaGTCCCTATTTAGCCCAAAGTCCCTGAGCAGCAAA | + |
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Preference number: 3 (lower is better) Translates to: TSGRTRQTKPTR*SLFSPKSLSSK Trigger: TTTGCTGCTCAGGGACTTTGGGCTAAATAGGGACCACCTCGTGGGCTTTGTCTGCCTTGTTCTTCCACTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR GCA 72 bp | TGTGCCACCAAGATCAAGCAGGCCACACTCTTCAGCTaGCCAGTTCCTGATGAAGATGATGGAAACATACCC | + |
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Preference number: 3 (lower is better) Translates to: CATKIKQATLFS*PVPDEDDGNIP Trigger: GGGTATGTTTCCATCATCTTCATCAGGAACTGGGCAGCTGAAGAGTGTGGCCTGCTTGATCTTGGTGGCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR-3UTR CAA 90 bp | GCAATGGATAGGCCAAGAATAAATGATTTTGAGATTCCCCAAAGTAGGGCATATTTTCATCTCCACCCATaGCTGCTGCTTAGCTGTGCC | + |
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Preference number: 3 (lower is better) Translates to: AMDRPRINDFEIPQSRAYFHLHP*LLLSCA Trigger: GGCACAGCTAAGCAGCAGCAATGGGTGGAGATGAAA...ATATGCCCTACTTTGGGGAATCTCAAAATCATTTATTCTTGGCCTATCCATTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR GCA 90 bp | GCTCTCCCTTCCTCAGTGTACTCTTGGACACTTTTACTCTCCCTCCCAGGCTGGCACAGCCAACAGGGCTaGACCACAGAGAAAGATGAG | + |
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Preference number: 4 (lower is better) Translates to: ALPSSVYSWTLLLSLPGWHSQQG*TTEKDE Trigger: CTCATCTTTCTCTGTGGTGCAGCCCTGTTGGCTGTG...CCAGCCTGGGAGGGAGAGTAAAAGTGTCCAAGAGTACACTGAGGAAGGGAGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR GCA 90 bp | AGTCTCCAGCTTCACAGAAGTCAGTGCAACTTAGGCAATCAGGACCCATCTCTCGGCCGCAACTCCAACTaGCACACCACCCACAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: SLQLHRSQCNLGNQDPSLGRNSN*HTTHSD Trigger: GTCACTGTGGGTGGTGTGGCAGTTGGAGTTGCGGCC...GAGAGATGGGTCCTGATTGCCTAAGTTGCACTGACTTCTGTGAAGCTGGAGACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR CCA 90 bp | AGAGTCTCAGGAAATGGGCAGACTTGGCTGCCTCTGAGACTGGGACCGATGCCCCATGGTTCAACTGTATaGTTGCCAGGGTTGGCACAA | + |
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Preference number: 4 (lower is better) Translates to: RVSGNGQTWLPLRLGPMPHGSTV*LPGLAQ Trigger: TTGTGCCAACCCTGGCAACCATACAGTTGAACCATG...GGGCATCGGTCCCAGTCTCAGAGGCAGCCAAGTCTGCCCATTTCCTGAGACTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR TCA 90 bp | TACTCTTGGACACTTTTACTCTCCCTCCCAGGCTGGAACCAGATACCTACGTCCCCAGGAAACCAAGAATaGAGAGCACAGCACCAGCGG | + |
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Preference number: 4 (lower is better) Translates to: YSWTLLLSLPGWNQIPTSPGNQE*RAQHQR Trigger: CCGCTGGTGCTGTGCTCTTCATTCTTGGTTTCCTGG...GGACGTAGGTATCTGGTTCCAGCCTGGGAGGGAGAGTAAAAGTGTCCAAGAGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR GCA 90 bp | CATTTCATCTCCACCCATTGCTGCTGCTTAGCTGTGCCAAGTGCCTCTTCCTGGGTTCAACTGTATGGTTaGCAGGGTTGGCACAACAGG | + |
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Preference number: 4 (lower is better) Translates to: HFISTHCCCLAVPSASSWVQLYG*QGWHNR Trigger: CCTGTTGTGCCAACCCTGGCAACCATACAGTTGAAC...CCAGGAAGAGGCACTTGGCACAGCTAAGCAGCAGCAATGGGTGGAGATGAAATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR CCA 90 bp | TTACTCTCCCTCCCAGGCTGGAACCAGATACCTACGTCCCTTCCCTCCCACCCTATTGTTCAGCCAATGTaGTGTACACCAAAGCAACCA | + |
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Preference number: 4 (lower is better) Translates to: LLSLPGWNQIPTSLPSHPIVQPM*CTPKQP Trigger: TGGTTGCTTTGGTGTACACCACATTGGCTGAACAAT...AGGGTGGGAGGGAAGGGACGTAGGTATCTGGTTCCAGCCTGGGAGGGAGAGTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR CCA 90 bp | AACGCAGACCAATGCAGCTCTCCCTTCCTCAGTGTACTCTTGGACACTTTTACTACATGGATACAACCATaGCAGCCAGCTCTAGGGCCG | + |
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Preference number: 4 (lower is better) Translates to: NADQCSSPFLSVLLDTFTTWIQP*QPALGP Trigger: CGGCCCTAGAGCTGGCTGCCATGGTTGTATCCATGT...AGTAAAAGTGTCCAAGAGTACACTGAGGAAGGGAGAGCTGCATTGGTCTGCGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| 3UTR CAA 72 bp | TCCATTCCAGCCCAAATGACATTTCATCTCCACCCATaGCTGCTGCTTAGCTGTGCCAAGTGCCTCTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: SIPAQMTFHLHP*LLLSCAKCLFL Trigger: CAGGAAGAGGCACTTGGCACAGCTAAGCAGCAGCAATGGGTGGAGATGAAATGTCATTTGGGCTGGAATGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR GCA 90 bp | GTGCTAGGATCATCAAGAGTCTCAGGAAATGGGCAGACTTGGCTGCCTCTGAGAAGCAACCACAGCACCTaGAATCTCAGCGATGAAGAT | + |
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Preference number: 4 (lower is better) Translates to: VLGSSRVSGNGQTWLPLRSNHST*NLSDED Trigger: ATCTTCATCGCTGAGATTGCAGGTGCTGTGGTTGCT...TCTCAGAGGCAGCCAAGTCTGCCCATTTCCTGAGACTCTTGATGATCCTAGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR CCA 90 bp | TCCTGGTACATAAACGCAGACCAATGCAGCTCTCCCTTCCTCAGTGTACTCTTGGTTGGCACAACAGGGTaGGGGGAAGACTTTATTCTC | + |
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Preference number: 4 (lower is better) Translates to: SWYINADQCSSPFLSVLLVGTTG*GEDFIL Trigger: GAGAATAAAGTCTTCCCCCCACCCTGTTGTGCCAAC...CAAGAGTACACTGAGGAAGGGAGAGCTGCATTGGTCTGCGTTTATGTACCAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR TCA 90 bp | ACTTGGCACAAGCTTGTTATTTTCATAGCTTTCCAGTCTAGTGCCCTTCACCAGGGAAGTAGCCCACGTTaGCAAACTGCATGGCACTGG | + |
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Preference number: 4 (lower is better) Translates to: TWHKLVIFIAFQSSALHQGSSPR*QTAWHW Trigger: CCAGTGCCATGCAGTTTGTCAACGTGGGCTACTTCC...CTGGTGAAGGGCACTAGACTGGAAAGCTATGAAAATAACAAGCTTGTGCCAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR TCA 90 bp | GACACTTTTACTCTCCCTCCCAGGCTGGAACCAGATACCTACGTCCCTTCCCTCCTCTTTGACGAAACGTaGGGCATTAAAATCTGTGTA | + |
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Preference number: 4 (lower is better) Translates to: DTFTLPPRLEPDTYVPSLLFDET*GIKICV Trigger: TACACAGATTTTAATGCCTCACGTTTCGTCAAAGAG...GAGGGAAGGGACGTAGGTATCTGGTTCCAGCCTGGGAGGGAGAGTAAAAGTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR GCA 90 bp | GACCAATGCAGCTCTCCCTTCCTCAGTGTACTCTTGGACACTTTTACTCTCCCTCCCACGTTGACAAACTaGATGGCACTGGATGATAGT | + |
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Preference number: 4 (lower is better) Translates to: DQCSSPFLSVLLDTFTLPPTLTN*MALDDS Trigger: ACTATCATCCAGTGCCATGCAGTTTGTCAACGTGGG...AGGGAGAGTAAAAGTGTCCAAGAGTACACTGAGGAAGGGAGAGCTGCATTGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR GCA 90 bp | TTACTCTCCCTCCCAGGCTGGAACCAGATACCTACGTCCCTTCCCTCCCACCCTTTGGCTCTGATTCTATaGAGAATCTCTTTGAAACAA | + |
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Preference number: 4 (lower is better) Translates to: LLSLPGWNQIPTSLPSHPLALIL*RISLKQ Trigger: TTGTTTCAAAGAGATTCTGCATAGAATCAGAGCCAA...AGGGTGGGAGGGAAGGGACGTAGGTATCTGGTTCCAGCCTGGGAGGGAGAGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR CCA 90 bp | TACTCTTGGACACTTTTACTCTCCCTCCCAGGCTGGAACCAGATACCTACGTCCCAAACTGCATGGCACTaGATGATAGTGATCCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: YSWTLLLSLPGWNQIPTSQTAWH*MIVIRR Trigger: TCTTCGGATCACTATCATCCAGTGCCATGCAGTTTG...GGACGTAGGTATCTGGTTCCAGCCTGGGAGGGAGAGTAAAAGTGTCCAAGAGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR GCA 90 bp | AGTGGAAGAACAAGGCAGACAAAGCCCACGAGGTGGTCCCTATTTAGCCCAAAGTTAAAGCCACAGCAATaGAACTCTTCCATTGTAGTG | + |
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Preference number: 4 (lower is better) Translates to: SGRTRQTKPTRWSLFSPKLKPQQ*NSSIVV Trigger: CACTACAATGGAAGAGTTGCATTGCTGTGGCTTTAA...CTTTGGGCTAAATAGGGACCACCTCGTGGGCTTTGTCTGCCTTGTTCTTCCACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR CCA 90 bp | TCCCTATTTAGCCCAAAGTCCCTGAGCAGCAAAGGCAAATCCATTCCAGCCCAATGCAGTATAGATACATaGATACAACCATGGCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: SLFSPKSLSSKGKSIPAQCSIDT*IQPWQP Trigger: TGGCTGCCATGGTTGTATCCATGTATCTATACTGCA...TTGGGCTGGAATGGATTTGCCTTTGCTGCTCAGGGACTTTGGGCTAAATAGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR TCA 90 bp | AGTCTCCAGCTTCACAGAAGTCAGTGCAACTTAGGCAATCAGGACCCATCTCTCTATGCAGAATCTCTTTaGAACAACCCTGTACTTTCA | + |
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Preference number: 4 (lower is better) Translates to: SLQLHRSQCNLGNQDPSLYAESL*NNPVLS Trigger: TGAAAGTACAGGGTTGTTTCAAAGAGATTCTGCATA...GAGAGATGGGTCCTGATTGCCTAAGTTGCACTGACTTCTGTGAAGCTGGAGACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR CAA 90 bp | TTACTCTCCCTCCCAGGCTGGAACCAGATACCTACGTCCCTTCCCTCCCACCCTCTATGCAGAATCTCTTaGAAACAACCCTGTACTTTC | + |
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Preference number: 5 (lower is better) Translates to: LLSLPGWNQIPTSLPSHPLCRIS*KQPCTF Trigger: GAAAGTACAGGGTTGTTTCAAAGAGATTCTGCATAG...AGGGTGGGAGGGAAGGGACGTAGGTATCTGGTTCCAGCCTGGGAGGGAGAGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR CAA 90 bp | AGTCTCCAGCTTCACAGAAGTCAGTGCAACTTAGGCAATCAGGACCCATCTCTCCAGGAGTGTCAGGAATaGTTCAGCCAATGTGGTGTA | + |
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Preference number: 5 (lower is better) Translates to: SLQLHRSQCNLGNQDPSLQECQE*FSQCGV Trigger: TACACCACATTGGCTGAACAATTCCTGACACTCCTG...GAGAGATGGGTCCTGATTGCCTAAGTTGCACTGACTTCTGTGAAGCTGGAGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS-3UTR CAA 90 bp | ATCAAGAGTCTCAGGAAATGGGCAGACTTGGCTGCCTCTGAGACTGGGACCGATTGTAGTGTTCCATACTaGGGTGAAATCAGTCTGGTA | + |
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Preference number: 5 (lower is better) Translates to: IKSLRKWADLAASETGTDCSVPY*GEISLV Trigger: TACCAGACTGATTTCACCCAAGTATGGAACACTACA...ATCGGTCCCAGTCTCAGAGGCAGCCAAGTCTGCCCATTTCCTGAGACTCTTGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS GCA 90 bp | CCAACTGCCACACCACCCACAGTGACTGCATTGGCTCTGATTCTATaGAGAATCTCTTTGAAACAACCCTGTACTTTCATACTTTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: PTATPPTVTALALIL*RISLKQPCTFILLA Trigger: GGCCAAAAGTATGAAAGTACAGGGTTGTTTCAAAGAGATTCTGCATAGAATCAGAGCCAATGCAGTCACTGTGGGTGGTGTGGCAGTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030465.10 ENSMUST00000143426.2 |
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| CDS-3UTR CAA 90 bp | CAGAAGTCAGTGCAACTTAGGCAATCAGGACCCATCTCTCCAAGCATATACAGGAGAAAGATGAGTAGATaGAAGAGGAACATCATGACC | + |
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Preference number: 5 (lower is better) Translates to: QKSVQLRQSGPISPSIYRRKMSR*KRNIMT Trigger: GGTCATGATGTTCCTCTTCAATCTACTCATCTTTCT...CCTGTATATGCTTGGAGAGATGGGTCCTGATTGCCTAAGTTGCACTGACTTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS CCA 72 bp | GCACCACCAGGAGTGTCAGGAATTGTTCAGCCAATGTaGTGTACACCAAAGCAACCACAGCACCTGCAATCT | + |
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Preference number: 6 (lower is better) Translates to: APPGVSGIVQPM*CTPKQPQHLQS Trigger: AGATTGCAGGTGCTGTGGTTGCTTTGGTGTACACCACATTGGCTGAACAATTCCTGACACTCCTGGTGGTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030465.10 ENSMUST00000143426.2 |
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| CDS CAA 90 bp | ACCATAGTCTTTTTCGATAGCAGGCACCACCAGGAGTGTCAGGAATaGTTCAGCCAATGTGGTGTACACCAAAGCAACCACAGCACCTGC | + |
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Preference number: 6 (lower is better) Translates to: TIVFFDSRHHQECQE*FSQCGVHQSNHSTC Trigger: GCAGGTGCTGTGGTTGCTTTGGTGTACACCACATTGGCTGAACAATTCCTGACACTCCTGGTGGTGCCTGCTATCGAAAAAGACTATGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030465.10 ENSMUST00000143426.2 |
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| CDS CAA 90 bp | TCTAGGGCCGCAACTCCAACTGCCACACCACCCACAGTGACTGCATaGGCTCTGATTCTATGCAGAATCTCTTTGAAACAACCCTGTACT | + |
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Preference number: 6 (lower is better) Translates to: SRAATPTATPPTVTA*ALILCRISLKQPCT Trigger: AGTACAGGGTTGTTTCAAAGAGATTCTGCATAGAATCAGAGCCAATGCAGTCACTGTGGGTGGTGTGGCAGTTGGAGTTGCGGCCCTAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030465.10 ENSMUST00000143426.2 |
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| CDS GCA 72 bp | AGCCAATGTGGTGTACACCAAAGCAACCACAGCACCTaGAATCTCAGCGATGAAGATGATGAGGAGGATGGA | + |
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Preference number: 6 (lower is better) Translates to: SQCGVHQSNHST*NLSDEDDEEDG Trigger: TCCATCCTCCTCATCATCTTCATCGCTGAGATTGCAGGTGCTGTGGTTGCTTTGGTGTACACCACATTGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030465.10 ENSMUST00000143426.2 |
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| CDS CCA 72 bp | ATTTCAGATTGCAGTATAGATACATGGATACAACCATaGCAGCCAGCTCTAGGGCCGCAACTCCAACTGCCA | + |
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Preference number: 6 (lower is better) Translates to: ISDCSIDTWIQP*QPALGPQLQLP Trigger: TGGCAGTTGGAGTTGCGGCCCTAGAGCTGGCTGCCATGGTTGTATCCATGTATCTATACTGCAATCTGAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030465.10 |
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| CDS CAA 72 bp | TTTTTCGATAGCAGGCACCACCAGGAGTGTCAGGAATaGTTCAGCCAATGTGGTGTACACCAAAGCAACCAC | + |
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Preference number: 6 (lower is better) Translates to: FFDSRHHQECQE*FSQCGVHQSNH Trigger: GTGGTTGCTTTGGTGTACACCACATTGGCTGAACAATTCCTGACACTCCTGGTGGTGCCTGCTATCGAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030465.10 ENSMUST00000143426.2 |
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| CDS CAA 90 bp | CCACCCACAGTGACTGCATTGGCTCTGATTCTATGCAGAATCTCTTaGAAACAACCCTGTACTTTCATACTTTTGGCCTTCTCCTCGGTG | + |
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Preference number: 6 (lower is better) Translates to: PPTVTALALILCRIS*KQPCTFILLAFSSV Trigger: CACCGAGGAGAAGGCCAAAAGTATGAAAGTACAGGGTTGTTTCAAAGAGATTCTGCATAGAATCAGAGCCAATGCAGTCACTGTGGGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030465.10 ENSMUST00000143426.2 |
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| CDS CAA 90 bp | ATTCTATGCAGAATCTCTTTGAAACAACCCTGTACTTTCATACTTTaGGCCTTCTCCTCGGTGCATGGTTCAACTGTATGGTTGCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: ILCRISLKQPCTFIL*AFSSVHGSTVWLPG Trigger: CCCTGGCAACCATACAGTTGAACCATGCACCGAGGAGAAGGCCAAAAGTATGAAAGTACAGGGTTGTTTCAAAGAGATTCTGCATAGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030465.10 ENSMUST00000143426.2 |
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| CDS CAA 72 bp | AGAATCTCTTTGAAACAACCCTGTACTTTCATACTTTaGGCCTTCTCCTCGGTGCATGGTTCAACTGTATGG | + |
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Preference number: 6 (lower is better) Translates to: RISLKQPCTFIL*AFSSVHGSTVW Trigger: CCATACAGTTGAACCATGCACCGAGGAGAAGGCCAAAAGTATGAAAGTACAGGGTTGTTTCAAAGAGATTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030465.10 ENSMUST00000143426.2 |
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| CDS CAA 72 bp | GTGACTGCATTGGCTCTGATTCTATGCAGAATCTCTTaGAAACAACCCTGTACTTTCATACTTTTGGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: VTALALILCRIS*KQPCTFILLAF Trigger: GAAGGCCAAAAGTATGAAAGTACAGGGTTGTTTCAAAGAGATTCTGCATAGAATCAGAGCCAATGCAGTCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030465.10 ENSMUST00000143426.2 |
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| CDS CAA 72 bp | ACAGCAATGCAACTCTTCCATTGTAGTGTTCCATACTaGGGTGAAATCAGTCTGGTAACCATAGTCTTTTTC | + |
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Preference number: 6 (lower is better) Translates to: TAMQLFHCSVPY*GEISLVTIVFF Trigger: GAAAAAGACTATGGTTACCAGACTGATTTCACCCAAGTATGGAACACTACAATGGAAGAGTTGCATTGCTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030465.10 ENSMUST00000143426.2 |
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