RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TSNAXIP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031893

Ensembl transcript IDs: ENSMUST00000034365.5, ENSMUST00000212566.2

Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CAGCCCTCATGGCCAGGACCCTCTCACTGCAGTCCTCGTTCATGGTaGCAATCTTGGCCTTCAGGGGCTCCAGGGACCGGATTCTCTCCT +
Preference number: 5 (lower is better)
Translates to: QPSWPGPSHCSPRSW*QSWPSGAPGTGFSP
Trigger: AGGAGAGAATCCGGTCCCTGGAGCCCCTGAAGGCCAAGATTGTCACCATGAACGAGGACTGCAGTGAGAGGGTCCTGGCCATGAGGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS TCA 90 bp CGAAGCAGACCCATGCCGATTTCCTCCAGGAGCACATCCACCAGCTaGTCACTGTTCTTTCCTTCAGCCAGCACTAGCCAGCGCTCTGGG +
Preference number: 5 (lower is better)
Translates to: RSRPMPISSRSTSTS*SLFFPSASTSQRSG
Trigger: CCCAGAGCGCTGGCTAGTGCTGGCTGAAGGAAAGAACAGTGATCAGCTGGTGGATGTGCTCCTGGAGGAAATCGGCATGGGTCTGCTTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 90 bp TCTAGTTGCTCCAGGTACTTGGGCTTGGAGATGCTCATGGACTGCTaGTGGCAGCTATTGGCTCGATTCCGGCTGTCATCTGAACAGGGC +
Preference number: 5 (lower is better)
Translates to: SSCSRYLGLEMLMDC*WQLLARFRLSSEQG
Trigger: GCCCTGTTCAGATGACAGCCGGAATCGAGCCAATAGCTGCCAGCAGCAGTCCATGAGCATCTCCAAGCCCAAGTACCTGGAGCAACTAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 90 bp CAAAGCCCAGGCCAGGGAAGAAGTCTTTCTCCCGAAGCAGACCCATaGCGATTTCCTCCAGGAGCACATCCACCAGCTGATCACTGTTCT +
Preference number: 5 (lower is better)
Translates to: QSPGQGRSLSPEADP*RFPPGAHPPADHCS
Trigger: AGAACAGTGATCAGCTGGTGGATGTGCTCCTGGAGGAAATCGGCATGGGTCTGCTTCGGGAGAAAGACTTCTTCCCTGGCCTGGGCTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS TCA 90 bp AGGTGGCCACCCAAGGATAACTGCAAGGGCAGTGTCCTTCGTTTCTaGGAAAGCTTGCGTTTCTCAATGCCCTTGGCTTCCGGAGTCCCT +
Preference number: 5 (lower is better)
Translates to: RWPPKDNCKGSVLRF*ESLRFSMPLASGVP
Trigger: AGGGACTCCGGAAGCCAAGGGCATTGAGAAACGCAAGCTTTCTCAGAAACGAAGGACACTGCCCTTGCAGTTATCCTTGGGTGGCCACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 90 bp GTTCCTGTGCAGAATCCGTGCTCAGGTCCAGCAGGAGGAGTTCCTTaGGCAGGTAGTTTTCTAGTTGCTCCAGGTACTTGGGCTTGGAGA +
Preference number: 5 (lower is better)
Translates to: VPVQNPCSGPAGGVP*AGSFLVAPGTWAWR
Trigger: TCTCCAAGCCCAAGTACCTGGAGCAACTAGAAAACTACCTGCGCAAGGAACTCCTCCTGCTGGACCTGAGCACGGATTCTGCACAGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CCA 90 bp GGAGGAGTTCCTTGCGCAGGTAGTTTTCTAGTTGCTCCAGGTACTTaGGCTTGGAGATGCTCATGGACTGCTGCTGGCAGCTATTGGCTC +
Preference number: 5 (lower is better)
Translates to: GGVPCAGSFLVAPGT*AWRCSWTAAGSYWL
Trigger: GAGCCAATAGCTGCCAGCAGCAGTCCATGAGCATCTCCAAGCCCAAGTACCTGGAGCAACTAGAAAACTACCTGCGCAAGGAACTCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 90 bp AGATCTCCCTATAAGGCTGCAGCCTCAGTTCCTGTGCAGAATCCGTaGTCAGGTCCAGCAGGAGGAGTTCCTTGCGCAGGTAGTTTTCTA +
Preference number: 5 (lower is better)
Translates to: RSPYKAAASVPVQNP*SGPAGGVPCAGSFL
Trigger: TAGAAAACTACCTGCGCAAGGAACTCCTCCTGCTGGACCTGAGCACGGATTCTGCACAGGAACTGAGGCTGCAGCCTTATAGGGAGATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CCA 90 bp TTCCGGCTGTCATCTGAACAGGGCTTTCGATTATGTAGAACTGTCTaGCCACTGGTGTATGTAGGCCATGGTGACAGGTGGCCACCCAAG +
Preference number: 5 (lower is better)
Translates to: FRLSSEQGFRLCRTV*PLVYVGHGDRWPPK
Trigger: CTTGGGTGGCCACCTGTCACCATGGCCTACATACACCAGTGGCCAGACAGTTCTACATAATCGAAAGCCCTGTTCAGATGACAGCCGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CCA 90 bp GGTAGTTTTCTAGTTGCTCCAGGTACTTGGGCTTGGAGATGCTCATaGACTGCTGCTGGCAGCTATTGGCTCGATTCCGGCTGTCATCTG +
Preference number: 5 (lower is better)
Translates to: GSFLVAPGTWAWRCS*TAAGSYWLDSGCHL
Trigger: CAGATGACAGCCGGAATCGAGCCAATAGCTGCCAGCAGCAGTCCATGAGCATCTCCAAGCCCAAGTACCTGGAGCAACTAGAAAACTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CCA 90 bp GTTCCTTGCGCAGGTAGTTTTCTAGTTGCTCCAGGTACTTGGGCTTaGAGATGCTCATGGACTGCTGCTGGCAGCTATTGGCTCGATTCC +
Preference number: 5 (lower is better)
Translates to: VPCAGSFLVAPGTWA*RCSWTAAGSYWLDS
Trigger: GGAATCGAGCCAATAGCTGCCAGCAGCAGTCCATGAGCATCTCCAAGCCCAAGTACCTGGAGCAACTAGAAAACTACCTGCGCAAGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 90 bp CCAAGGATAACTGCAAGGGCAGTGTCCTTCGTTTCTGAGAAAGCTTaGGTTTCTCAATGCCCTTGGCTTCCGGAGTCCCTCCTGAAGCTT +
Preference number: 5 (lower is better)
Translates to: PRITARAVSFVSEKA*VSQCPWLPESLLKL
Trigger: AAGCTTCAGGAGGGACTCCGGAAGCCAAGGGCATTGAGAAACGCAAGCTTTCTCAGAAACGAAGGACACTGCCCTTGCAGTTATCCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 90 bp CTAGCTTGCTGGGTCTGGCTCTCGTGGTCCTACACGCTTCGTGTCTaGCATCCTAAGTCGATCAAGTGCAGTCTCAACCTTTATGGAGAT +
Preference number: 5 (lower is better)
Translates to: LACWVWLSWSYTLRV*HPKSIKCSLNLYGD
Trigger: ATCTCCATAAAGGTTGAGACTGCACTTGATCGACTTAGGATGGCAGACACGAAGCGTGTAGGACCACGAGAGCCAGACCCAGCAAGCTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CCA 90 bp GGTACTTGGGCTTGGAGATGCTCATGGACTGCTGCTGGCAGCTATTaGCTCGATTCCGGCTGTCATCTGAACAGGGCTTTCGATTATGTA +
Preference number: 5 (lower is better)
Translates to: GTWAWRCSWTAAGSY*LDSGCHLNRAFDYV
Trigger: TACATAATCGAAAGCCCTGTTCAGATGACAGCCGGAATCGAGCCAATAGCTGCCAGCAGCAGTCCATGAGCATCTCCAAGCCCAAGTACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 90 bp GCAAGGGCAGTGTCCTTCGTTTCTGAGAAAGCTTGCGTTTCTCAATaGCCTTGGCTTCCGGAGTCCCTCCTGAAGCTTGTATACTTATTC +
Preference number: 5 (lower is better)
Translates to: ARAVSFVSEKACVSQ*PWLPESLLKLVYLF
Trigger: GAATAAGTATACAAGCTTCAGGAGGGACTCCGGAAGCCAAGGGCATTGAGAAACGCAAGCTTTCTCAGAAACGAAGGACACTGCCCTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 90 bp GGATCTCCTGCAACTCATTATAGAACTGGTCCCGCTCCTTTAGTGTaGTCATGTGCAACTGCAGCAGCAGCTCGTGTTCCTTTTGGACTT +
Preference number: 5 (lower is better)
Translates to: GSPATHYRTGPAPLV*SCATAAAARVPFGL
Trigger: AAGTCCAAAAGGAACACGAGCTGCTGCTGCAGTTGCACATGAGCACACTAAAGGAGCGGGACCAGTTCTATAATGAGTTGCAGGAGATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 90 bp TCGTGGTCCTACACGCTTCGTGTCTGCCATCCTAAGTCGATCAAGTaGAGTCTCAACCTTTATGGAGATTATCCCCTGCTTCTCCTCATC +
Preference number: 5 (lower is better)
Translates to: SWSYTLRVCHPKSIK*SLNLYGDYPLLLLI
Trigger: GATGAGGAGAAGCAGGGGATAATCTCCATAAAGGTTGAGACTGCACTTGATCGACTTAGGATGGCAGACACGAAGCGTGTAGGACCACGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CCA 90 bp GCAGTGTCCTTCGTTTCTGAGAAAGCTTGCGTTTCTCAATGCCCTTaGCTTCCGGAGTCCCTCCTGAAGCTTGTATACTTATTCTTGGCT +
Preference number: 5 (lower is better)
Translates to: AVSFVSEKACVSQCP*LPESLLKLVYLFLA
Trigger: AGCCAAGAATAAGTATACAAGCTTCAGGAGGGACTCCGGAAGCCAAGGGCATTGAGAAACGCAAGCTTTCTCAGAAACGAAGGACACTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CCA 90 bp CATAGTCGGCTTTCAGGCTTTCTAGCTGCTCTTGAAGCTCCATGTTaGTCTTCTCTTGCATTTCCAAGTCTCTCCTGGGTACCACATCTC +
Preference number: 5 (lower is better)
Translates to: HSRLSGFLAALEAPC*SSLAFPSLSWVPHL
Trigger: GAGATGTGGTACCCAGGAGAGACTTGGAAATGCAAGAGAAGACCAACATGGAGCTTCAAGAGCAGCTAGAAAGCCTGAAAGCCGACTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS TCA 90 bp TTGAGGATGGTGCTGAACTGTTCCATGGTGATTGATCCCTCATTCTaGGTGTCAACACTTAGCAACTCCTTCAGCAGATGGGACAGTGTC +
Preference number: 5 (lower is better)
Translates to: LRMVLNCSMVIDPSF*VSTLSNSFSRWDSV
Trigger: GACACTGTCCCATCTGCTGAAGGAGTTGCTAAGTGTTGACACTCAGAATGAGGGATCAATCACCATGGAACAGTTCAGCACCATCCTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034365.5
CDS TCA 90 bp AGAAAGCTTGCGTTTCTCAATGCCCTTGGCTTCCGGAGTCCCTCCTaGAGCTTGTATACTTATTCTTGGCTTGGAGAAACTTTTACGCTC +
Preference number: 5 (lower is better)
Translates to: RKLAFLNALGFRSPS*SLYTYSWLGETFTL
Trigger: GAGCGTAAAAGTTTCTCCAAGCCAAGAATAAGTATACAAGCTTCAGGAGGGACTCCGGAAGCCAAGGGCATTGAGAAACGCAAGCTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS TCA 90 bp ACGTCTTCAAGACTGAACTGTTCCATGGTGATTGATCCCTCATTCTaGGTGTCAACACTTAGCAACTCCTTCAGCAGATGGGACAGTGTC +
Preference number: 5 (lower is better)
Translates to: TSSRLNCSMVIDPSF*VSTLSNSFSRWDSV
Trigger: GACACTGTCCCATCTGCTGAAGGAGTTGCTAAGTGTTGACACTCAGAATGAGGGATCAATCACCATGGAACAGTTCAGTCTTGAAGACGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212566.2
CDS CCA 90 bp TGCTTCCTTGTCACTTTCATACTGTTCCCACAGCCTCTGCACAAATaGCTCACTCTGCCCTTCCTCATCCTCATTAAACAAAGATCGGTA +
Preference number: 5 (lower is better)
Translates to: CFLVTFILFPQPLHK*LTLPFLILIKQRSV
Trigger: TACCGATCTTTGTTTAATGAGGATGAGGAAGGGCAGAGTGAGCCATTTGTGCAGAGGCTGTGGGAACAGTATGAAAGTGACAAGGAAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034365.5
CDS GCA 90 bp TCTAAGTATGCTTCCTTGTCACTTTCATACTGTTCCCACAGCCTCTaGACAAATGGCTCACTCTGCCCTTCCTCATCCTCATTAAACAAA +
Preference number: 5 (lower is better)
Translates to: SKYASLSLSYCSHSL*TNGSLCPSSSSLNK
Trigger: TTTGTTTAATGAGGATGAGGAAGGGCAGAGTGAGCCATTTGTGCAGAGGCTGTGGGAACAGTATGAAAGTGACAAGGAAGCATACTTAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034365.5
CDS CAA 72 bp CAGCGCTCTGGGCCCCCTGCTATGATACTTTCGCATTaGGTCCAGTCAGGTCGCGGTGTGGAGGTGCGCTGG +
Preference number: 6 (lower is better)
Translates to: QRSGPPAMILSH*VQSGRGVEVRW
Trigger: CCAGCGCACCTCCACACCGCGACCTGACTGGACCAAATGCGAAAGTATCATAGCAGGGGGCCCAGAGCGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CAA 90 bp AGCACTAGCCAGCGCTCTGGGCCCCCTGCTATGATACTTTCGCATTaGGTCCAGTCAGGTCGCGGTGTGGAGGTGCGCTGGATCTCCTGC +
Preference number: 6 (lower is better)
Translates to: STSQRSGPPAMILSH*VQSGRGVEVRWISC
Trigger: GCAGGAGATCCAGCGCACCTCCACACCGCGACCTGACTGGACCAAATGCGAAAGTATCATAGCAGGGGGCCCAGAGCGCTGGCTAGTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS TCA 72 bp TGGCCAGGACCCTCTCACTGCAGTCCTCGTTCATGGTaGCAATCTTGGCCTTCAGGGGCTCCAGGGACCGGA +
Preference number: 6 (lower is better)
Translates to: WPGPSHCSPRSW*QSWPSGAPGTG
Trigger: TCCGGTCCCTGGAGCCCCTGAAGGCCAAGATTGTCACCATGAACGAGGACTGCAGTGAGAGGGTCCTGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CAA 90 bp ATGGCCAGGACCCTCTCACTGCAGTCCTCGTTCATGGTGACAATCTaGGCCTTCAGGGGCTCCAGGGACCGGATTCTCTCCTTTTGGTGG +
Preference number: 6 (lower is better)
Translates to: MARTLSLQSSFMVTI*AFRGSRDRILSFWW
Trigger: CCACCAAAAGGAGAGAATCCGGTCCCTGGAGCCCCTGAAGGCCAAGATTGTCACCATGAACGAGGACTGCAGTGAGAGGGTCCTGGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CAA 72 bp ACCCTCTCACTGCAGTCCTCGTTCATGGTGACAATCTaGGCCTTCAGGGGCTCCAGGGACCGGATTCTCTCC +
Preference number: 6 (lower is better)
Translates to: TLSLQSSFMVTI*AFRGSRDRILS
Trigger: GGAGAGAATCCGGTCCCTGGAGCCCCTGAAGGCCAAGATTGTCACCATGAACGAGGACTGCAGTGAGAGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 72 bp TATAAGGCTGCAGCCTCAGTTCCTGTGCAGAATCCGTaGTCAGGTCCAGCAGGAGGAGTTCCTTGCGCAGGT +
Preference number: 6 (lower is better)
Translates to: YKAAASVPVQNP*SGPAGGVPCAG
Trigger: ACCTGCGCAAGGAACTCCTCCTGCTGGACCTGAGCACGGATTCTGCACAGGAACTGAGGCTGCAGCCTTATA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 72 bp GGCCAGGGAAGAAGTCTTTCTCCCGAAGCAGACCCATaGCGATTTCCTCCAGGAGCACATCCACCAGCTGAT +
Preference number: 6 (lower is better)
Translates to: GQGRSLSPEADP*RFPPGAHPPAD
Trigger: ATCAGCTGGTGGATGTGCTCCTGGAGGAAATCGGCATGGGTCTGCTTCGGGAGAAAGACTTCTTCCCTGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 72 bp TCCAGGTACTTGGGCTTGGAGATGCTCATGGACTGCTaGTGGCAGCTATTGGCTCGATTCCGGCTGTCATCT +
Preference number: 6 (lower is better)
Translates to: SRYLGLEMLMDC*WQLLARFRLSS
Trigger: AGATGACAGCCGGAATCGAGCCAATAGCTGCCAGCAGCAGTCCATGAGCATCTCCAAGCCCAAGTACCTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CCA 72 bp GCTTGGAGATGCTCATGGACTGCTGCTGGCAGCTATTaGCTCGATTCCGGCTGTCATCTGAACAGGGCTTTC +
Preference number: 6 (lower is better)
Translates to: AWRCSWTAAGSY*LDSGCHLNRAF
Trigger: GAAAGCCCTGTTCAGATGACAGCCGGAATCGAGCCAATAGCTGCCAGCAGCAGTCCATGAGCATCTCCAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CCA 72 bp CCTTGCGCAGGTAGTTTTCTAGTTGCTCCAGGTACTTaGGCTTGGAGATGCTCATGGACTGCTGCTGGCAGC +
Preference number: 6 (lower is better)
Translates to: PCAGSFLVAPGT*AWRCSWTAAGS
Trigger: GCTGCCAGCAGCAGTCCATGAGCATCTCCAAGCCCAAGTACCTGGAGCAACTAGAAAACTACCTGCGCAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CAA 72 bp GGCTTGGAGATGCTCATGGACTGCTGCTGGCAGCTATaGGCTCGATTCCGGCTGTCATCTGAACAGGGCTTT +
Preference number: 6 (lower is better)
Translates to: GLEMLMDCCWQL*ARFRLSSEQGF
Trigger: AAAGCCCTGTTCAGATGACAGCCGGAATCGAGCCAATAGCTGCCAGCAGCAGTCCATGAGCATCTCCAAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 72 bp ACTGCAAGGGCAGTGTCCTTCGTTTCTGAGAAAGCTTaGGTTTCTCAATGCCCTTGGCTTCCGGAGTCCCTC +
Preference number: 6 (lower is better)
Translates to: TARAVSFVSEKA*VSQCPWLPESL
Trigger: GAGGGACTCCGGAAGCCAAGGGCATTGAGAAACGCAAGCTTTCTCAGAAACGAAGGACACTGCCCTTGCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 72 bp CAGAATCCGTGCTCAGGTCCAGCAGGAGGAGTTCCTTaGGCAGGTAGTTTTCTAGTTGCTCCAGGTACTTGG +
Preference number: 6 (lower is better)
Translates to: QNPCSGPAGGVP*AGSFLVAPGTW
Trigger: CCAAGTACCTGGAGCAACTAGAAAACTACCTGCGCAAGGAACTCCTCCTGCTGGACCTGAGCACGGATTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 72 bp AAAGATCTCCCTATAAGGCTGCAGCCTCAGTTCCTGTaGAGAATCCGTGCTCAGGTCCAGCAGGAGGAGTTC +
Preference number: 6 (lower is better)
Translates to: KDLPIRLQPQFL*RIRAQVQQEEF
Trigger: GAACTCCTCCTGCTGGACCTGAGCACGGATTCTGCACAGGAACTGAGGCTGCAGCCTTATAGGGAGATCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 72 bp TGGGTCTGGCTCTCGTGGTCCTACACGCTTCGTGTCTaGCATCCTAAGTCGATCAAGTGCAGTCTCAACCTT +
Preference number: 6 (lower is better)
Translates to: WVWLSWSYTLRV*HPKSIKCSLNL
Trigger: AAGGTTGAGACTGCACTTGATCGACTTAGGATGGCAGACACGAAGCGTGTAGGACCACGAGAGCCAGACCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CCA 72 bp AGGTACTTGGGCTTGGAGATGCTCATGGACTGCTGCTaGCAGCTATTGGCTCGATTCCGGCTGTCATCTGAA +
Preference number: 6 (lower is better)
Translates to: RYLGLEMLMDCC*QLLARFRLSSE
Trigger: TTCAGATGACAGCCGGAATCGAGCCAATAGCTGCCAGCAGCAGTCCATGAGCATCTCCAAGCCCAAGTACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CCA 72 bp AGCTTCACTGGGTCTTCTCCCCAAACACCTGGGGTCTaGGCTAGTGACATGTCTTCTTGCTGGTACCTCAGT +
Preference number: 6 (lower is better)
Translates to: SFTGSSPQTPGV*ASDMSSCWYLS
Trigger: ACTGAGGTACCAGCAAGAAGACATGTCACTAGCCCAGACCCCAGGTGTTTGGGGAGAAGACCCAGTGAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 72 bp TTTCGCATTTGGTCCAGTCAGGTCGCGGTGTGGAGGTaGGCTGGATCTCCTGCAACTCATTATAGAACTGGT +
Preference number: 6 (lower is better)
Translates to: FRIWSSQVAVWR*AGSPATHYRTG
Trigger: ACCAGTTCTATAATGAGTTGCAGGAGATCCAGCGCACCTCCACACCGCGACCTGACTGGACCAAATGCGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CCA 72 bp GCAGGTAGTTTTCTAGTTGCTCCAGGTACTTGGGCTTaGAGATGCTCATGGACTGCTGCTGGCAGCTATTGG +
Preference number: 6 (lower is better)
Translates to: AGSFLVAPGTWA*RCSWTAAGSYW
Trigger: CCAATAGCTGCCAGCAGCAGTCCATGAGCATCTCCAAGCCCAAGTACCTGGAGCAACTAGAAAACTACCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CAA 90 bp AGGTACTTGGGCTTGGAGATGCTCATGGACTGCTGCTGGCAGCTATaGGCTCGATTCCGGCTGTCATCTGAACAGGGCTTTCGATTATGT +
Preference number: 6 (lower is better)
Translates to: RYLGLEMLMDCCWQL*ARFRLSSEQGFRLC
Trigger: ACATAATCGAAAGCCCTGTTCAGATGACAGCCGGAATCGAGCCAATAGCTGCCAGCAGCAGTCCATGAGCATCTCCAAGCCCAAGTACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS TCA 72 bp CCCAAGGATAACTGCAAGGGCAGTGTCCTTCGTTTCTaGGAAAGCTTGCGTTTCTCAATGCCCTTGGCTTCC +
Preference number: 6 (lower is better)
Translates to: PKDNCKGSVLRF*ESLRFSMPLAS
Trigger: GGAAGCCAAGGGCATTGAGAAACGCAAGCTTTCTCAGAAACGAAGGACACTGCCCTTGCAGTTATCCTTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 72 bp GTGTCCTTCGTTTCTGAGAAAGCTTGCGTTTCTCAATaGCCTTGGCTTCCGGAGTCCCTCCTGAAGCTTGTA +
Preference number: 6 (lower is better)
Translates to: VSFVSEKACVSQ*PWLPESLLKLV
Trigger: TACAAGCTTCAGGAGGGACTCCGGAAGCCAAGGGCATTGAGAAACGCAAGCTTTCTCAGAAACGAAGGACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 72 bp GCAACTCATTATAGAACTGGTCCCGCTCCTTTAGTGTaGTCATGTGCAACTGCAGCAGCAGCTCGTGTTCCT +
Preference number: 6 (lower is better)
Translates to: ATHYRTGPAPLV*SCATAAAARVP
Trigger: AGGAACACGAGCTGCTGCTGCAGTTGCACATGAGCACACTAAAGGAGCGGGACCAGTTCTATAATGAGTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 72 bp GCTTCCTTGTCACTTTCATACTGTTCCCACAGCCTCTaGACAAATGGCTCACTCTGCCCTTCCTCATCCTCA +
Preference number: 6 (lower is better)
Translates to: ASLSLSYCSHSL*TNGSLCPSSSS
Trigger: TGAGGATGAGGAAGGGCAGAGTGAGCCATTTGTGCAGAGGCTGTGGGAACAGTATGAAAGTGACAAGGAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034365.5
CDS CCA 72 bp TATGGAGATTATCCCCTGCTTCTCCTCATCCTCCAGTaGCACATCAATTGCAGGGATCTGATAGGCCTGGCT +
Preference number: 6 (lower is better)
Translates to: YGDYPLLLLILQ*HINCRDLIGLA
Trigger: AGCCAGGCCTATCAGATCCCTGCAATTGATGTGCCACTGGAGGATGAGGAGAAGCAGGGGATAATCTCCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CAA 90 bp ATGCGTTCCTTCCAGGCATCCTTAAGGAGGTTTACCACCTCCTTCTaGCTTGGCTTCTTGTTCTTCACAGGGCCATCAAACCGAAGGAAG +
Preference number: 6 (lower is better)
Translates to: MRSFQASLRRFTTSF*LGFLFFTGPSNRRK
Trigger: CTTCCTTCGGTTTGATGGCCCTGTGAAGAACAAGAAGCCAAGCAAGAAGGAGGTGGTAAACCTCCTTAAGGATGCCTGGAAGGAACGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CAA 90 bp GCCCAGGCCATGGCATCATTGACCCCAAAGCGACGCTCCAGAAAATaGAAGAAGAAATCTGGAAATGGCTCCTTCTGTTCCTCTGCAATG +
Preference number: 6 (lower is better)
Translates to: AQAMASLTPKRRSRK*KKKSGNGSFCSSAM
Trigger: CATTGCAGAGGAACAGAAGGAGCCATTTCCAGATTTCTTCTTCAATTTTCTGGAGCGTCGCTTTGGGGTCAATGATGCCATGGCCTGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS GCA 72 bp TCAGCCAGGCTCCTCCTCAGTTTAGCTACCTCGCTCTaGAGTGAGATCTTCTCTTCGTTCTTTTTGTCGATG +
Preference number: 6 (lower is better)
Translates to: SARLLLSLATSL*SEIFSSFFLSM
Trigger: CATCGACAAAAAGAACGAAGAGAAGATCTCACTGCAGAGCGAGGTAGCTAAACTGAGGAGGAGCCTGGCTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CAA 90 bp GGATCCAGGTCTAGCTCCTGCTTCAGTTCCTCTAAGTATGCTTCCTaGTCACTTTCATACTGTTCCCACAGCCTCTGCACAAATGGCTCA +
Preference number: 6 (lower is better)
Translates to: GSRSSSCFSSSKYAS*SLSYCSHSLCTNGS
Trigger: TGAGCCATTTGTGCAGAGGCTGTGGGAACAGTATGAAAGTGACAAGGAAGCATACTTAGAGGAACTGAAGCAGGAGCTAGACCTGGATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034365.5
CDS GCA 72 bp AGGGTCACGTCTTCAAGAGGATCCAGGTCTAGCTCCTaGTTCAGTTCCTCTAAGTATGCTTCCTTGTCACTT +
Preference number: 6 (lower is better)
Translates to: RVTSSRGSRSSS*FSSSKYASLSL
Trigger: AAGTGACAAGGAAGCATACTTAGAGGAACTGAAGCAGGAGCTAGACCTGGATCCTCTTGAAGACGTGACCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034365.5
CDS CAA 72 bp TTCCAGGCATCCTTAAGGAGGTTTACCACCTCCTTCTaGCTTGGCTTCTTGTTCTTCACAGGGCCATCAAAC +
Preference number: 6 (lower is better)
Translates to: FQASLRRFTTSF*LGFLFFTGPSN
Trigger: GTTTGATGGCCCTGTGAAGAACAAGAAGCCAAGCAAGAAGGAGGTGGTAAACCTCCTTAAGGATGCCTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CAA 90 bp CGGATTCTCTCCTTTTGGTGGGCTAGCATCACCTCGTACGCATTCTaGATGGAGGATAACAGTGGCTTGTATGTCTTGAAATCCTCTATG +
Preference number: 6 (lower is better)
Translates to: RILSFWWASITSYAF*MEDNSGLYVLKSSM
Trigger: CATAGAGGATTTCAAGACATACAAGCCACTGTTATCCTCCATCAAGAATGCGTACGAGGTGATGCTAGCCCACCAAAAGGAGAGAATCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CAA 90 bp TTCTCTTGCATTTCCAAGTCTCTCCTGGGTACCACATCTCCAGAGTaGGCTTTCATTGTGTTAAGTTCCATCTGTGTGCGAGTCAGGTCT +
Preference number: 6 (lower is better)
Translates to: FSCISKSLLGTTSPE*AFIVLSSICVRVRS
Trigger: AGACCTGACTCGCACACAGATGGAACTTAACACAATGAAAGCCAACTCTGGAGATGTGGTACCCAGGAGAGACTTGGAAATGCAAGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS TCA 72 bp GTGCTGAACTGTTCCATGGTGATTGATCCCTCATTCTaGGTGTCAACACTTAGCAACTCCTTCAGCAGATGG +
Preference number: 6 (lower is better)
Translates to: VLNCSMVIDPSF*VSTLSNSFSRW
Trigger: CCATCTGCTGAAGGAGTTGCTAAGTGTTGACACTCAGAATGAGGGATCAATCACCATGGAACAGTTCAGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034365.5
CDS GCA 72 bp TACACGCTTCGTGTCTGCCATCCTAAGTCGATCAAGTaGAGTCTCAACCTTTATGGAGATTATCCCCTGCTT +
Preference number: 6 (lower is better)
Translates to: YTLRVCHPKSIK*SLNLYGDYPLL
Trigger: AAGCAGGGGATAATCTCCATAAAGGTTGAGACTGCACTTGATCGACTTAGGATGGCAGACACGAAGCGTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CCA 72 bp TTCGTTTCTGAGAAAGCTTGCGTTTCTCAATGCCCTTaGCTTCCGGAGTCCCTCCTGAAGCTTGTATACTTA +
Preference number: 6 (lower is better)
Translates to: FVSEKACVSQCP*LPESLLKLVYL
Trigger: TAAGTATACAAGCTTCAGGAGGGACTCCGGAAGCCAAGGGCATTGAGAAACGCAAGCTTTCTCAGAAACGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CAA 72 bp TCTAGCTCCTGCTTCAGTTCCTCTAAGTATGCTTCCTaGTCACTTTCATACTGTTCCCACAGCCTCTGCACA +
Preference number: 6 (lower is better)
Translates to: SSSCFSSSKYAS*SLSYCSHSLCT
Trigger: TGTGCAGAGGCTGTGGGAACAGTATGAAAGTGACAAGGAAGCATACTTAGAGGAACTGAAGCAGGAGCTAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034365.5
CDS TCA 72 bp AGACTGAACTGTTCCATGGTGATTGATCCCTCATTCTaGGTGTCAACACTTAGCAACTCCTTCAGCAGATGG +
Preference number: 6 (lower is better)
Translates to: RLNCSMVIDPSF*VSTLSNSFSRW
Trigger: CCATCTGCTGAAGGAGTTGCTAAGTGTTGACACTCAGAATGAGGGATCAATCACCATGGAACAGTTCAGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212566.2
CDS CAA 72 bp TCCTTTTGGTGGGCTAGCATCACCTCGTACGCATTCTaGATGGAGGATAACAGTGGCTTGTATGTCTTGAAA +
Preference number: 6 (lower is better)
Translates to: SFWWASITSYAF*MEDNSGLYVLK
Trigger: TTTCAAGACATACAAGCCACTGTTATCCTCCATCAAGAATGCGTACGAGGTGATGCTAGCCCACCAAAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CAA 90 bp GCTAGCATCACCTCGTACGCATTCTTGATGGAGGATAACAGTGGCTaGTATGTCTTGAAATCCTCTATGAAGAACTCAAAGATCTCCCTA +
Preference number: 6 (lower is better)
Translates to: ASITSYAFLMEDNSG*YVLKSSMKNSKISL
Trigger: TAGGGAGATCTTTGAGTTCTTCATAGAGGATTTCAAGACATACAAGCCACTGTTATCCTCCATCAAGAATGCGTACGAGGTGATGCTAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2
CDS CAA 72 bp ACCTCGCTCTGCAGTGAGATCTTCTCTTCGTTCTTTTaGTCGATGAGTTTTAGCAAATTCATCTTCTCTTTC +
Preference number: 6 (lower is better)
Translates to: TSLCSEIFSSFF*SMSFSKFIFSF
Trigger: GAAAGAGAAGATGAATTTGCTAAAACTCATCGACAAAAAGAACGAAGAGAAGATCTCACTGCAGAGCGAGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034365.5
ENSMUST00000212566.2