Pregenerated sensors for TSLP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024379Ensembl transcript IDs: ENSMUST00000025237.5
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGGTCTGAACCCTTTGACAGCTGGATTTGCAATATGATCTCAGCAGTTTCTCCCAAGAATAAACACCAGTaGTCCTCTAAGTGTCACACC | + |
|
Preference number: 2 (lower is better) Translates to: GSEPFDSWICNMISAVSPKNKHQ*SSKCHT Trigger: GGTGTGACACTTAGAGGACCACTGGTGTTTATTCTT...GGGAGAAACTGCTGAGATCATATTGCAAATCCAGCTGTCAAAGGGTTCAGACCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| 3UTR GCA 72 bp | TACTGTCCTGGGTCTGAACCCTTTGACAGCTGGATTTaGAATATGATCTCAGCAGTTTCTCCCAGATTCCAC | + |
|
Preference number: 3 (lower is better) Translates to: YCPGSEPFDSWI*NMISAVSPRFH Trigger: GTGGAATCTGGGAGAAACTGCTGAGATCATATTGCAAATCCAGCTGTCAAAGGGTTCAGACCCAGGACAGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| 3UTR CCA 72 bp | GAATTGTACTGTCCTGGGTCTGAACCCTTTGACAGCTaGATTTGCAATATGATCTCAGCAGTTTCTCCCAGA | + |
|
Preference number: 3 (lower is better) Translates to: ELYCPGSEPFDS*ICNMISAVSPR Trigger: TCTGGGAGAAACTGCTGAGATCATATTGCAAATCCAGCTGTCAAAGGGTTCAGACCCAGGACAGTACAATTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| 3UTR TCA 72 bp | TCCACAATCTTCTTTCAGACCACCTCATCATGGCAGTaGCTGCCCGAACTGTCATTTTCTTCTTTGGTAAAA | + |
|
Preference number: 3 (lower is better) Translates to: STIFFQTTSSWQ*LPELSFSSLVK Trigger: TTTTACCAAAGAAGAAAATGACAGTTCGGGCAGTCACTGCCATGATGAGGTGGTCTGAAAGAAGATTGTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| 3UTR TCA 72 bp | ACTTTAAATATATATCTCGTAGATGTGCAAGGCTCTTaGGATCTGCTCACGAATTGTACTGTCCTGGGTCTG | + |
|
Preference number: 3 (lower is better) Translates to: TLNIYLVDVQGS*DLLTNCTVLGL Trigger: CAGACCCAGGACAGTACAATTCGTGAGCAGATCTCAAGAGCCTTGCACATCTACGAGATATATATTTAAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| 3UTR-3UTR CAA 90 bp | TCTGAACCCTTTGACAGCTGGATTTGCAATATGATCTCAGCAGTTTCTCCCAGATCCATTAACGGTCTATaGCTCATTTCCCATTTAAAG | + |
|
Preference number: 3 (lower is better) Translates to: SEPFDSWICNMISAVSPRSINGL*LISHLK Trigger: CTTTAAATGGGAAATGAGCAATAGACCGTTAATGGA...TCTGGGAGAAACTGCTGAGATCATATTGCAAATCCAGCTGTCAAAGGGTTCAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS-3UTR TCA 90 bp | ATAAACACCAGTGGTCCTCTAAGTGTCACACCCTTAGTATTCTGTCCACTAAAATGTTTTGTCGGGGAGTaGAGGGCAGCCAGGGATAGG | + |
|
Preference number: 4 (lower is better) Translates to: INTSGPLSVTPLVFCPLKCFVGE*RAARDR Trigger: CCTATCCCTGGCTGCCCTTCACTCCCCGACAAAACA...TTTTAGTGGACAGAATACTAAGGGTGTGACACTTAGAGGACCACTGGTGTTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS-3UTR GCA 90 bp | GGGTCTGAACCCTTTGACAGCTGGATTTGCAATATGATCTCAGCAGTTTCTCCCGTTTTGGACTTCTTGTaGCATTTCCTGAGTACCGTC | + |
|
Preference number: 4 (lower is better) Translates to: GSEPFDSWICNMISAVSPVLDFL*HFLSTV Trigger: GACGGTACTCAGGAAATGGCACAAGAAGTCCAAAAC...GGGAGAAACTGCTGAGATCATATTGCAAATCCAGCTGTCAAAGGGTTCAGACCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS-3UTR GCA 90 bp | GACAGCTGGATTTGCAATATGATCTCAGCAGTTTCTCCCAGATTCCACAATCTTGGAGACAAGCTGGCTTaGTCTCACAGTCCTCGATTT | + |
|
Preference number: 4 (lower is better) Translates to: DSWICNMISAVSPRFHNLGDKLA*SHSPRF Trigger: AAATCGAGGACTGTGAGAGCAAGCCAGCTTGTCTCC...AAGATTGTGGAATCTGGGAGAAACTGCTGAGATCATATTGCAAATCCAGCTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS-3UTR CCA 90 bp | CTGGATTTGCAATATGATCTCAGCAGTTTCTCCCAGATTCCACAATCTTCTTTCTTCAGGCAGATGTTTTaGACTTCTTGTGCCATTTCC | + |
|
Preference number: 4 (lower is better) Translates to: LDLQYDLSSFSQIPQSSFFRQMF*TSCAIS Trigger: GGAAATGGCACAAGAAGTCCAAAACATCTGCCTGAA...GAAAGAAGATTGTGGAATCTGGGAGAAACTGCTGAGATCATATTGCAAATCCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS-3UTR TCA 90 bp | CACACCCTTAGTATTCTGTCCACTAAAACCAAGATAGAGATTTTCATAGCAGAAATTCTGGAGATTGCATaGAGGAATACCACAATCTTA | + |
|
Preference number: 4 (lower is better) Translates to: HTLSILSTKTKIEIFIAEILEIA*RNTTIL Trigger: TAAGATTGTGGTATTCCTTCATGCAATCTCCAGAAT...TTCTGCTATGAAAATCTCTATCTTGGTTTTAGTGGACAGAATACTAAGGGTGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS CCA 90 bp | TGCCATTTCCTGAGTACCGTCATTTCTCTCAGTTTCAGGGTAGCCTaGGCAGTGGTCATTGAGGGCTTCTCTTGTTCTCCGGGCAAATGT | + |
|
Preference number: 5 (lower is better) Translates to: CHFLSTVISLSFRVA*AVVIEGFSCSPGKC Trigger: ACATTTGCCCGGAGAACAAGAGAAGCCCTCAATGACCACTGCCCAGGCTACCCTGAAACTGAGAGAAATGACGGTACTCAGGAAATGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS TCA 90 bp | ATTGAGGGCTTCTCTTGTTCTCCGGGCAAATGTTTTGTCGGGGAGTaGAGGGCAGCCAGGGATAGGATTGAGAGTATAGTACTCGATTTT | + |
|
Preference number: 5 (lower is better) Translates to: IEGFSCSPGKCFVGE*RAARDRIESIVLDF Trigger: AAAATCGAGTACTATACTCTCAATCCTATCCCTGGCTGCCCTTCACTCCCCGACAAAACATTTGCCCGGAGAACAAGAGAAGCCCTCAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS-3UTR CAA 90 bp | CTGGATTTGCAATATGATCTCAGCAGTTTCTCCCAGATTCCACAATCTTCTTTCCCTGGGCAGTGGTCATaGAGGGCTTCTCTTGTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: LDLQYDLSSFSQIPQSSFPGQWS*RASLVL Trigger: GAGAACAAGAGAAGCCCTCAATGACCACTGCCCAGG...GAAAGAAGATTGTGGAATCTGGGAGAAACTGCTGAGATCATATTGCAAATCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS-3UTR CAA 90 bp | GGGTCTGAACCCTTTGACAGCTGGATTTGCAATATGATCTCAGCAGTTTCTCCCGATGTTTTGGACTTCTaGTGCCATTTCCTGAGTACC | + |
|
Preference number: 5 (lower is better) Translates to: GSEPFDSWICNMISAVSPDVLDF*CHFLST Trigger: GGTACTCAGGAAATGGCACAAGAAGTCCAAAACATC...GGGAGAAACTGCTGAGATCATATTGCAAATCCAGCTGTCAAAGGGTTCAGACCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS CCA 72 bp | CTGAGTACCGTCATTTCTCTCAGTTTCAGGGTAGCCTaGGCAGTGGTCATTGAGGGCTTCTCTTGTTCTCCG | + |
|
Preference number: 6 (lower is better) Translates to: LSTVISLSFRVA*AVVIEGFSCSP Trigger: CGGAGAACAAGAGAAGCCCTCAATGACCACTGCCCAGGCTACCCTGAAACTGAGAGAAATGACGGTACTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS CAA 72 bp | TCATTGAGGGCTTCTCTTGTTCTCCGGGCAAATGTTTaGTCGGGGAGTGAAGGGCAGCCAGGGATAGGATTG | + |
|
Preference number: 6 (lower is better) Translates to: SLRASLVLRANV*SGSEGQPGIGL Trigger: CAATCCTATCCCTGGCTGCCCTTCACTCCCCGACAAAACATTTGCCCGGAGAACAAGAGAAGCCCTCAATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS GCA 72 bp | AGGAGACAAGCTGGCTTGCTCTCACAGTCCTCGATTTaGTCGAACTTAGCCCCTTTCAAATCTCCAGTCAGG | + |
|
Preference number: 6 (lower is better) Translates to: RRQAGLLSQSSI*SNLAPFKSPVR Trigger: CCTGACTGGAGATTTGAAAGGGGCTAAGTTCGAGCAAATCGAGGACTGTGAGAGCAAGCCAGCTTGTCTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS CAA 72 bp | CAGGAGACAAGCTGGCTTGCTCTCACAGTCCTCGATTaGCTCGAACTTAGCCCCTTTCAAATCTCCAGTCAG | + |
|
Preference number: 6 (lower is better) Translates to: QETSWLALTVLD*LELSPFQISSQ Trigger: CTGACTGGAGATTTGAAAGGGGCTAAGTTCGAGCAAATCGAGGACTGTGAGAGCAAGCCAGCTTGTCTCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS TCA 72 bp | TTCTCTCAGTTTCAGGGTAGCCTGGGCAGTGGTCATTaGGGGCTTCTCTTGTTCTCCGGGCAAATGTTTTGT | + |
|
Preference number: 6 (lower is better) Translates to: FSQFQGSLGSGH*GLLLFSGQMFC Trigger: ACAAAACATTTGCCCGGAGAACAAGAGAAGCCCTCAATGACCACTGCCCAGGCTACCCTGAAACTGAGAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS TCA 72 bp | TTCTCTTGTTCTCCGGGCAAATGTTTTGTCGGGGAGTaGAGGGCAGCCAGGGATAGGATTGAGAGTATAGTA | + |
|
Preference number: 6 (lower is better) Translates to: FSCSPGKCFVGE*RAARDRIESIV Trigger: TACTATACTCTCAATCCTATCCCTGGCTGCCCTTCACTCCCCGACAAAACATTTGCCCGGAGAACAAGAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||
| CDS CAA 90 bp | CTCGATTTTCAGGAGACAAGCTGGCTTGCTCTCACAGTCCTCGATTaGCTCGAACTTAGCCCCTTTCAAATCTCCAGTCAGGTCATGAAA | + |
|
Preference number: 6 (lower is better) Translates to: LDFQETSWLALTVLD*LELSPFQISSQVMK Trigger: TTTCATGACCTGACTGGAGATTTGAAAGGGGCTAAGTTCGAGCAAATCGAGGACTGTGAGAGCAAGCCAGCTTGTCTCCTGAAAATCGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025237.5 |
||