RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TSKS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059891

Ensembl transcript IDs: ENSMUST00000080233.9, ENSMUST00000120929.9, ENSMUST00000207719.2, ENSMUST00000208475.2

Found 168 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp GCCAGCATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGGCATATAGTCCAAAGTaGCCACCTTCTCCCCTCCTC +
Preference number: 2 (lower is better)
Translates to: ASMRGHLLFRAWTPTFRGAYSPK*PPSPLL
Trigger: GAGGAGGGGAGAAGGTGGCCACTTTGGACTATATGC...CCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCATGCTGGC
54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
3UTR TCA 72 bp CCATTGCCCCCGTGGACCCCTCAAGTGGCAGGTGGCTaGGTTGGTCGTGGAGGGAGCACATCTTCAAATGCA +
Preference number: 3 (lower is better)
Translates to: PLPPWTPQVAGG*VGRGGSTSSNA
Trigger: TGCATTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCCACGGGGGCAATGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR TCA 90 bp CATTGCCCCCGTGGACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGGACCCGAGCAGCCCTaGATGGGAGTGGCAGGGCTC +
Preference number: 4 (lower is better)
Translates to: HCPRGPLKWQVAELVVEGGPEQP*MGVAGL
Trigger: GAGCCCTGCCACTCCCATTCAGGGCTGCTCGGGTCC...TCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCCACGGGGGCAATG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CCA 90 bp CATTGCCCCCGTGGACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGGGTCCCCCGCTTCGTaGATCTCTTTGGATTGCCAG +
Preference number: 4 (lower is better)
Translates to: HCPRGPLKWQVAELVVEGGSPAS*ISLDCQ
Trigger: CTGGCAATCCAAAGAGATCCACGAAGCGGGGGACCC...TCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCCACGGGGGCAATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CCA 90 bp GGACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAACAGTGCATCGGCTCGTaGGACATCCGGGGCTCCACC +
Preference number: 4 (lower is better)
Translates to: GPLKWQVAELVVEGAHLQQCIGS*DIRGST
Trigger: GGTGGAGCCCCGGATGTCCCACGAGCCGATGCACTG...TTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CCA 90 bp CATTGCCCCCGTGGACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAAGCCCTGAATGGGAGTaGCAGGGCTCAGACCATGTC +
Preference number: 4 (lower is better)
Translates to: HCPRGPLKWQVAELVVEGSPEWE*QGSDHV
Trigger: GACATGGTCTGAGCCCTGCCACTCCCATTCAGGGCT...TCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCCACGGGGGCAATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp CATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTGGGGTTCCTCGGGGCTaGCAGGAGGACCCGAGCAGC +
Preference number: 4 (lower is better)
Translates to: HLLFRAWTPTFRGSPSIAGVPRG*QEDPSS
Trigger: GCTGCTCGGGTCCTCCTGGCAGCCCCGAGGAACCCC...AGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp GGACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAACTGTGCGGACTGCCATaGCCCAGCCACTGGAGGACA +
Preference number: 4 (lower is better)
Translates to: GPLKWQVAELVVEGAHLQLCGLP*PSHWRT
Trigger: TGTCCTCCAGTGGCTGGGGCATGGCAGTCCGCACAG...TTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp GGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTAGGGTCCCTCCCCTGTaGGGACTGCCATGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: GHLLFRAWTPTFRGSPSIRVPPL*GLPCPS
Trigger: GCTGGGGCATGGCAGTCCGCACAGGGGAGGGACCCT...AATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CCA 90 bp GGACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAGCTGCAGGGACTCCGTaGATAACTGCTGCCCCTGGC +
Preference number: 4 (lower is better)
Translates to: GPLKWQVAELVVEGAHLQAAGTP*ITAAPG
Trigger: GCCAGGGGCAGCAGTTATCCACGGAGTCCCTGCAGC...TTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CCA 90 bp ATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCGGGCCAACCGAAGGGTaGAGCTCAGGGCCTCTGCCC +
Preference number: 4 (lower is better)
Translates to: MRGHLLFRAWTPTFRGSPGPTEG*SSGPLP
Trigger: GGGCAGAGGCCCTGAGCTCCACCCTTCGGTTGGCCC...GGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR GCA 90 bp GAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCAAGGTGGCCCTGGCAGTaGCAGTGGACCACTGTCCTC +
Preference number: 4 (lower is better)
Translates to: EAIYCSEPGLPRLGGAPPRWPWQ*QWTTVL
Trigger: GAGGACAGTGGTCCACTGGCACTGCCAGGGCCACCT...TGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp AGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCCTCCTGCAAGCCCCTTaGGGACTGTGCCTGTTCCCG +
Preference number: 4 (lower is better)
Translates to: RGHLLFRAWTPTFRGSPSLLQAP*GLCLFP
Trigger: CGGGAACAGGCACAGTCCGCAAGGGGCTTGCAGGAG...GGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp GGACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAGCACGTTCCAGCAGCTaGTGCAGGGACTCCGTGGAT +
Preference number: 4 (lower is better)
Translates to: GPLKWQVAELVVEGAHLQARSSS*CRDSVD
Trigger: ATCCACGGAGTCCCTGCAGCAGCTGCTGGAACGTGC...TTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp GGACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAGGAGCTCAGGGCCTCTaGCCTGACGTGTTTGGCCAA +
Preference number: 4 (lower is better)
Translates to: GPLKWQVAELVVEGAHLQGAQGL*PDVFGQ
Trigger: TTGGCCAAACACGTCAGGGCAGAGGCCCTGAGCTCC...TTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CCA 90 bp GACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAAGGAAGCAGGTGGCCCTaGCAGTGCCAGTGGACCACT +
Preference number: 4 (lower is better)
Translates to: DPSSGRWLSWSWREHIFKGSRWP*QCQWTT
Trigger: AGTGGTCCACTGGCACTGCCAGGGCCACCTGCTTCC...TTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CCA 90 bp GAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCACGAACGGCCTCGTCTTaGGCCAACCGAAGGGTGGAG +
Preference number: 4 (lower is better)
Translates to: EAIYCSEPGLPRLGGAPPRTASS*ANRRVE
Trigger: CTCCACCCTTCGGTTGGCCCAAGACGAGGCCGTTCG...TGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp GAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCAGAGTGTAGGCGCCGCTaGGCTTACTGGACTGGGCAG +
Preference number: 4 (lower is better)
Translates to: EAIYCSEPGLPRLGGAPPECRRR*AYWTGQ
Trigger: CTGCCCAGTCCAGTAAGCCCAGCGGCGCCTACACTC...TGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp ATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTGGCGCTCCAGCTCCTaGGGAGAGGAGTGTAGGCGC +
Preference number: 4 (lower is better)
Translates to: MRGHLLFRAWTPTFRGSPWRSSS*GEECRR
Trigger: GCGCCTACACTCCTCTCCCCAGGAGCTGGAGCGCCA...GGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208475.2
CDS-3UTR TCA 90 bp GCCAGCATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGTCAGGGCCTCTGCCCTaGCGTGTTTGGCCAAGGCCT +
Preference number: 4 (lower is better)
Translates to: ASMRGHLLFRAWTPTFRGSGPLP*RVWPRP
Trigger: AGGCCTTGGCCAAACACGTCAGGGCAGAGGCCCTGA...CCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCATGCTGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR TCA 90 bp GGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTTCAGGGCCTCTGCCCTaGCGTGTTTGGCCAAGGCCT +
Preference number: 4 (lower is better)
Translates to: GHLLFRAWTPTFRGSPSISGPLP*RVWPRP
Trigger: AGGCCTTGGCCAAACACGTCAGGGCAGAGGCCCTGA...AATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR TCA 90 bp GGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTCAAGTGGCAGGTGGCTaGGTTGGTCGTGGAGGGAGC +
Preference number: 4 (lower is better)
Translates to: GHLLFRAWTPTFRGSPSIQVAGG*VGRGGS
Trigger: GCTCCCTCCACGACCAACTCAGCCACCTGCCACTTG...AATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208475.2
CDS-3UTR GCA 90 bp GGACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAACGGGGCGTCTCATCCTaGAGTTGCTGCTGGAGGTAT +
Preference number: 4 (lower is better)
Translates to: GPLKWQVAELVVEGAHLQRGVSS*SCCWRY
Trigger: ATACCTCCAGCAGCAACTGCAGGATGAGACGCCCCG...TTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp ATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCGTGGATAACTGCTaGCCCTGGCTGGCACAGCGC +
Preference number: 4 (lower is better)
Translates to: MRGHLLFRAWTPTFRGSPSVDNC*PWLAQR
Trigger: GCGCTGTGCCAGCCAGGGGCAGCAGTTATCCACGGA...GGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR GCA 90 bp GGACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAACGTTCCAGCAGCTGCTaGAGGGACTCCGTGGATAAC +
Preference number: 4 (lower is better)
Translates to: GPLKWQVAELVVEGAHLQRSSSC*RDSVDN
Trigger: GTTATCCACGGAGTCCCTGCAGCAGCTGCTGGAACG...TTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp AGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCGCACGTTCCAGCAGCTaGTGCAGGGACTCCGTGGAT +
Preference number: 4 (lower is better)
Translates to: RGHLLFRAWTPTFRGSPSARSSS*CRDSVD
Trigger: ATCCACGGAGTCCCTGCAGCAGCTGCTGGAACGTGC...GGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp CATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTTGCGCCCGCTCCCACTaGCCCAGGAAGCCATCCAGA +
Preference number: 4 (lower is better)
Translates to: HLLFRAWTPTFRGSPSIACARSH*PRKPSR
Trigger: TCTGGATGGCTTCCTGGGCCAGTGGGAGCGGGCGCA...AGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CCA 90 bp ATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCGTAGCCTCTGGCAACTaGGGCAGGCAGGAGCCAGAC +
Preference number: 4 (lower is better)
Translates to: MRGHLLFRAWTPTFRGSPVASGN*GRQEPD
Trigger: GTCTGGCTCCTGCCTGCCCCAGTTGCCAGAGGCTAC...GGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp ATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTTGGGCCAACCGAAGGGTaGAGCTCAGGGCCTCTGCCC +
Preference number: 4 (lower is better)
Translates to: IYCSEPGLPRLGGAPPLLGPTEG*SSGPLP
Trigger: GGGCAGAGGCCCTGAGCTCCACCCTTCGGTTGGCCC...AAGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp AGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCGGCAGGTGGCTGAGTTaGTCGTGGAGGGAGCACATC +
Preference number: 4 (lower is better)
Translates to: RGHLLFRAWTPTFRGSPSGRWLS*SWREHI
Trigger: GATGTGCTCCCTCCACGACCAACTCAGCCACCTGCC...GGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208475.2
CDS-3UTR TCA 90 bp GACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAATTCAGCGTCTTCCACTaGACGGGTCACCTTGCGGCA +
Preference number: 4 (lower is better)
Translates to: DPSSGRWLSWSWREHIFKFSVFH*TGHLAA
Trigger: TGCCGCAAGGTGACCCGTTCAGTGGAAGACGCTGAA...TTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp ATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTTCTGATGCCACCGGGCTaGCAGCGAGGACACCTCCCT +
Preference number: 4 (lower is better)
Translates to: IYCSEPGLPRLGGAPPLLLMPPG*QRGHLP
Trigger: AGGGAGGTGTCCTCGCTGGCAGCCCGGTGGCATCAG...AAGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CCA 90 bp CATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTCCGAGCAGCCCTGAATaGGAGTGGCAGGGCTCAGAC +
Preference number: 4 (lower is better)
Translates to: HLLFRAWTPTFRGSPSIAPSSPE*EWQGSD
Trigger: GTCTGAGCCCTGCCACTCCCATTCAGGGCTGCTCGG...AGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CCA 90 bp AGCATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCTGTTTGGCCAAGGCCTaGCGCTCCAGCTCCTGGGGA +
Preference number: 4 (lower is better)
Translates to: SMRGHLLFRAWTPTFRGSCLAKA*RSSSWG
Trigger: TCCCCAGGAGCTGGAGCGCCAGGCCTTGGCCAAACA...GCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCATGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208475.2
CDS-3UTR GCA 90 bp CATTGCCCCCGTGGACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAAGCAAGGCAGAGTTCTaGTTCAGGACATTGGTTTTG +
Preference number: 4 (lower is better)
Translates to: HCPRGPLKWQVAELVVEGSKAEF*FRTLVL
Trigger: CAAAACCAATGTCCTGAAGCAGAACTCTGCCTTGCT...TCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCCACGGGGGCAATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp AGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCAGTGCACAACTCATCTaGTCGTCCTCGCAGCTCCTG +
Preference number: 4 (lower is better)
Translates to: RGHLLFRAWTPTFRGSPSSAQLI*SSSQLL
Trigger: CAGGAGCTGCGAGGACGAGCAGATGAGTTGTGCACT...GGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp ATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTTTCCGTGGATAACTGCTaGCCCTGGCTGGCACAGCGC +
Preference number: 4 (lower is better)
Translates to: IYCSEPGLPRLGGAPPLLSVDNC*PWLAQR
Trigger: GCGCTGTGCCAGCCAGGGGCAGCAGTTATCCACGGA...AAGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR GCA 90 bp AGCATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCGACTCCGTGGATAACTaGTGCCCCTGGCTGGCACAG +
Preference number: 4 (lower is better)
Translates to: SMRGHLLFRAWTPTFRGSDSVDN*CPWLAQ
Trigger: CTGTGCCAGCCAGGGGCAGCAGTTATCCACGGAGTC...GCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCATGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR GCA 90 bp GCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCGTTCCAGCAGCTGCTaGAGGGACTCCGTGGATAAC +
Preference number: 4 (lower is better)
Translates to: AIYCSEPGLPRLGGAPPLRSSSC*RDSVDN
Trigger: GTTATCCACGGAGTCCCTGCAGCAGCTGCTGGAACG...CAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR GCA 90 bp CATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTGGAGCTCAGGGCCTCTaGCCTGACGTGTTTGGCCAA +
Preference number: 4 (lower is better)
Translates to: HLLFRAWTPTFRGSPSIAGAQGL*PDVFGQ
Trigger: TTGGCCAAACACGTCAGGGCAGAGGCCCTGAGCTCC...AGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp GGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGATGTCAGGGTCCTCTaGAGCCCAGGGTGTTGTAGG +
Preference number: 4 (lower is better)
Translates to: GHLLFRAWTPTFRGSPSIDVRVL*SPGCCR
Trigger: CCTACAACACCCTGGGCTCCAGAGGACCCTGACATC...AATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CCA 90 bp GAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCACCAGCTCCTCCAGAATaGGTTTTACTGGGCCCAGTG +
Preference number: 4 (lower is better)
Translates to: EAIYCSEPGLPRLGGAPPPAPPE*VLLGPV
Trigger: CACTGGGCCCAGTAAAACCCATTCTGGAGGAGCTGG...TGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp ATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTTGCTGCAGGGACTCCGTaGATAACTGCTGCCCCTGGC +
Preference number: 4 (lower is better)
Translates to: IYCSEPGLPRLGGAPPLLAAGTP*ITAAPG
Trigger: GCCAGGGGCAGCAGTTATCCACGGAGTCCCTGCAGC...AAGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp TGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAATGCATATAGTCGTAGCCTCTGGCAACTaGGGCAGGCAGGAGCCAGAC +
Preference number: 4 (lower is better)
Translates to: WQVAELVVEGAHLQMHIVVASGN*GRQEPD
Trigger: GTCTGGCTCCTGCCTGCCCCAGTTGCCAGAGGCTAC...GACTATATGCATTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
3UTR CAA 72 bp TGCCCCCGTGGACCCCTCAAGTGGCAGGTGGCTGAGTaGGTCGTGGAGGGAGCACATCTTCAAATGCATATA +
Preference number: 4 (lower is better)
Translates to: CPRGPLKWQVAE*VVEGAHLQMHI
Trigger: TATATGCATTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCCACGGGGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR TCA 90 bp ATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTTAGGCAGAGGACCGCTTaGGGTTCAGGCACCAGTGCA +
Preference number: 4 (lower is better)
Translates to: IYCSEPGLPRLGGAPPLLRQRTA*GSGTSA
Trigger: TGCACTGGTGCCTGAACCTCAAGCGGTCCTCTGCCT...AAGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp TGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAATGCATATAGTCCCGGTGGAGACCTTCTaGAACTCCTGCTCGCTCAGC +
Preference number: 4 (lower is better)
Translates to: WQVAELVVEGAHLQMHIVPVETF*NSCSLS
Trigger: GCTGAGCGAGCAGGAGTTGCAGAAGGTCTCCACCGG...GACTATATGCATTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp AGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCTTTTACTGGGCCCAGTaGCTCCAGTTCACTCCTCAG +
Preference number: 4 (lower is better)
Translates to: RGHLLFRAWTPTFRGSPSFYWAQ*LQFTPQ
Trigger: CTGAGGAGTGAACTGGAGGCACTGGGCCCAGTAAAA...GGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR GCA 90 bp ATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTTGACTCCGTGGATAACTaGTGCCCCTGGCTGGCACAG +
Preference number: 4 (lower is better)
Translates to: IYCSEPGLPRLGGAPPLLDSVDN*CPWLAQ
Trigger: CTGTGCCAGCCAGGGGCAGCAGTTATCCACGGAGTC...AAGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp CATTGCCCCCGTGGACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGACTTCGTGGATCTCTTTaGATTGCCAGATTGTCTTCA +
Preference number: 4 (lower is better)
Translates to: HCPRGPLKWQVAELVVEGLRGSL*IARLSS
Trigger: TGAAGACAATCTGGCAATCCAAAGAGATCCACGAAG...TCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCCACGGGGGCAATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CCA 90 bp AAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAATGCATATATGTAGGGGAAGCAGGTaGCCCTGGCAGTGCCAGTGG +
Preference number: 4 (lower is better)
Translates to: KWQVAELVVEGAHLQMHICRGSR*PWQCQW
Trigger: CCACTGGCACTGCCAGGGCCACCTGCTTCCCCTACA...TATATGCATTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CCA 90 bp GAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCACAGAATGGGTTTTACTaGGCCCAGTGCCTCCAGTTC +
Preference number: 4 (lower is better)
Translates to: EAIYCSEPGLPRLGGAPPQNGFY*AQCLQF
Trigger: GAACTGGAGGCACTGGGCCCAGTAAAACCCATTCTG...TGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp ATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCCCAGCTCCTCCAGAATaGGTTTTACTGGGCCCAGTG +
Preference number: 4 (lower is better)
Translates to: MRGHLLFRAWTPTFRGSPPAPPE*VLLGPV
Trigger: CACTGGGCCCAGTAAAACCCATTCTGGAGGAGCTGG...GGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCAT
56% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp ATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTTCTTGTGTAGCCTCTaGCAACTGGGGCAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: MRGHLLFRAWTPTFRGSPFLCSL*QLGQAG
Trigger: TCCTGCCTGCCCCAGTTGCCAGAGGCTACACAAGAA...GGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp AAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAATGCATATACGAACGGCCTCGTCTTaGGCCAACCGAAGGGTGGAG +
Preference number: 4 (lower is better)
Translates to: KWQVAELVVEGAHLQMHIRTASS*ANRRVE
Trigger: CTCCACCCTTCGGTTGGCCCAAGACGAGGCCGTTCG...TATATGCATTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CCA 90 bp GCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGTCAGCAGTAGGTTCTTaGCCCGAACGGCCTCGTCTT +
Preference number: 4 (lower is better)
Translates to: AIYCSEPGLPRLGGAPPLSAVGS*PERPRL
Trigger: AAGACGAGGCCGTTCGGGCCAAGAACCTACTGCTGA...CAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp GGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTTCAGCAGTAGGTTCTTaGCCCGAACGGCCTCGTCTT +
Preference number: 4 (lower is better)
Translates to: GHLLFRAWTPTFRGSPSISAVGS*PERPRL
Trigger: AAGACGAGGCCGTTCGGGCCAAGAACCTACTGCTGA...AATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp GAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCAGCATATAGTCCAAAGTaGCCACCTTCTCCTCCGGCT +
Preference number: 4 (lower is better)
Translates to: EAIYCSEPGLPRLGGAPPAYSPK*PPSPPA
Trigger: AGCCGGAGGAGAAGGTGGCCACTTTGGACTATATGC...TGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208475.2
CDS-3UTR TCA 90 bp GGACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAATTTCCTTCAAGCTGGTaGTGGAGTCTTTGGCACGTA +
Preference number: 4 (lower is better)
Translates to: GPLKWQVAELVVEGAHLQFPSSW*WSLWHV
Trigger: TACGTGCCAAAGACTCCATCACCAGCTTGAAGGAAA...TTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp GCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTGAACGGGTCACCTTaGGGCAGTTCTCCTTCAACT +
Preference number: 4 (lower is better)
Translates to: AIYCSEPGLPRLGGAPPLLNGSP*GSSPST
Trigger: AGTTGAAGGAGAACTGCCGCAAGGTGACCCGTTCAG...CAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CCA 90 bp CATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTTTCTTGTGTAGCCTCTaGCAACTGGGGCAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: HLLFRAWTPTFRGSPSIAFLCSL*QLGQAG
Trigger: TCCTGCCTGCCCCAGTTGCCAGAGGCTACACAAGAA...AGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp AGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCTGGCTGAGTTGGTCGTaGAGGGAGCACATCTTCAAA +
Preference number: 4 (lower is better)
Translates to: RGHLLFRAWTPTFRGSPSWLSWS*REHIFK
Trigger: TTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCA...GGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208475.2
CDS-3UTR GCA 90 bp AAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAATGCATATAAGGTTCAGGCACCAGTaGATCGGCTCGTGGGACATC +
Preference number: 4 (lower is better)
Translates to: KWQVAELVVEGAHLQMHIRFRHQ*IGSWDI
Trigger: GATGTCCCACGAGCCGATGCACTGGTGCCTGAACCT...TATATGCATTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp CATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTTTTTACTGGGCCCAGTaGCTCCAGTTCACTCCTCAG +
Preference number: 4 (lower is better)
Translates to: HLLFRAWTPTFRGSPSIAFYWAQ*LQFTPQ
Trigger: CTGAGGAGTGAACTGGAGGCACTGGGCCCAGTAAAA...AGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CCA 90 bp AGCATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCAGAATGGGTTTTACTaGGCCCAGTGCCTCCAGTTC +
Preference number: 4 (lower is better)
Translates to: SMRGHLLFRAWTPTFRGSQNGFY*AQCLQF
Trigger: GAACTGGAGGCACTGGGCCCAGTAAAACCCATTCTG...GCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCATGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR TCA 90 bp AGCATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCGTACCAATCCACTGTTaGCCCCACTCAGTAGTTCTG +
Preference number: 4 (lower is better)
Translates to: SMRGHLLFRAWTPTFRGSVPIHC*PHSVVL
Trigger: CAGAACTACTGAGTGGGGTCAACAGTGGATTGGTAC...GCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCATGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp GCCAGCATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGTCATCCTGCAGTTGCTaGTGGAGGTATCTTAGCTTC +
Preference number: 4 (lower is better)
Translates to: ASMRGHLLFRAWTPTFRGSSCSC*WRYLSF
Trigger: GAAGCTAAGATACCTCCAGCAGCAACTGCAGGATGA...CCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCATGCTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp TCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAATGCATACCAGCCTCCAGTTTTTaGTCCAACTCCTGCAACTCG +
Preference number: 4 (lower is better)
Translates to: SSGRWLSWSWREHIFKCIPASSF*SNSCNS
Trigger: CGAGTTGCAGGAGTTGGAGCAAAAACTGGAGGCTGG...TATGCATTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR GCA 90 bp ATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTGGATCTCTTTGGATTaGCAGATTGTCTTCACCACC +
Preference number: 4 (lower is better)
Translates to: MRGHLLFRAWTPTFRGSPWISLD*QIVFTT
Trigger: GGTGGTGAAGACAATCTGGCAATCCAAAGAGATCCA...GGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS GCA 90 bp AGCCACTGGAGGACAGGCCTCGCTGCCGCGGGGGTTCCTCGGGGCTaGCAGGAGGACCCGAGCAGCCCTGAATGGGAGTGGCAGGGCTCA +
Preference number: 5 (lower is better)
Translates to: SHWRTGLAAAGVPRG*QEDPSSPEWEWQGS
Trigger: TGAGCCCTGCCACTCCCATTCAGGGCTGCTCGGGTCCTCCTGGCAGCCCCGAGGAACCCCCGCGGCAGCGAGGCCTGTCCTCCAGTGGCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS GCA 90 bp ACTCCTGCTCGCTCAGCGAGGGTCCCTCCCCTGTGCGGACTGCCATaGCCCAGCCACTGGAGGACAGGCCTCGCTGCCGCGGGGGTTCCT +
Preference number: 5 (lower is better)
Translates to: TPARSARVPPLCGLP*PSHWRTGLAAAGVP
Trigger: AGGAACCCCCGCGGCAGCGAGGCCTGTCCTCCAGTGGCTGGGGCATGGCAGTCCGCACAGGGGAGGGACCCTCGCTGAGCGAGCAGGAGT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CCA 90 bp GCGGGGGTTCCTCGGGGCTGCCAGGAGGACCCGAGCAGCCCTGAATaGGAGTGGCAGGGCTCAGACCATGTCGGGAGAGGCCAGCCTCCA +
Preference number: 5 (lower is better)
Translates to: AGVPRGCQEDPSSPE*EWQGSDHVGRGQPP
Trigger: TGGAGGCTGGCCTCTCCCGACATGGTCTGAGCCCTGCCACTCCCATTCAGGGCTGCTCGGGTCCTCCTGGCAGCCCCGAGGAACCCCCGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CCA 90 bp AAGCCCCTTGCGGACTGTGCCTGTTCCCGCTGCGCCCGCTCCCACTaGCCCAGGAAGCCATCCAGACGGCCGCCAAGGCCTCCCAGCAAC +
Preference number: 5 (lower is better)
Translates to: KPLADCACSRCARSH*PRKPSRRPPRPPSN
Trigger: GTTGCTGGGAGGCCTTGGCGGCCGTCTGGATGGCTTCCTGGGCCAGTGGGAGCGGGCGCAGCGGGAACAGGCACAGTCCGCAAGGGGCTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CCA 90 bp AGGGTGGAGCTCAGGGCCTCTGCCCTGACGTGTTTGGCCAAGGCCTaGCGCTCCAGCTCCTGGGGAGAGGAGTGTAGGCGCCGCTGGGCT +
Preference number: 5 (lower is better)
Translates to: RVELRASALTCLAKA*RSSSWGEECRRRWA
Trigger: AGCCCAGCGGCGCCTACACTCCTCTCCCCAGGAGCTGGAGCGCCAGGCCTTGGCCAAACACGTCAGGGCAGAGGCCCTGAGCTCCACCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208475.2
CDS TCA 90 bp CCTCGTCTTGGGCCAACCGAAGGGTGGAGCTCAGGGCCTCTGCCCTaGCGTGTTTGGCCAAGGCCTGGCGCTCCAGCTCCTGGGGAGAGG +
Preference number: 5 (lower is better)
Translates to: PRLGPTEGWSSGPLP*RVWPRPGAPAPGER
Trigger: CCTCTCCCCAGGAGCTGGAGCGCCAGGCCTTGGCCAAACACGTCAGGGCAGAGGCCCTGAGCTCCACCCTTCGGTTGGCCCAAGACGAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208475.2
CDS GCA 90 bp TCCCTCCTCAGCTCCTCCAGGCCGGTGGAGACCTTCTGCAACTCCTaGTCGCTCAGCGAGGGTCCCTCCCCTGTGCGGACTGCCATGCCC +
Preference number: 5 (lower is better)
Translates to: SLLSSSRPVETFCNS*SLSEGPSPVRTAMP
Trigger: GGGCATGGCAGTCCGCACAGGGGAGGGACCCTCGCTGAGCGAGCAGGAGTTGCAGAAGGTCTCCACCGGCCTGGAGGAGCTGAGGAGGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS GCA 90 bp GTCAGCGCACGTTCCAGCAGCTGCTGCAGGGACTCCGTGGATAACTaGTGCCCCTGGCTGGCACAGCGCGCACAGGGGCCTTGGGCAGAC +
Preference number: 5 (lower is better)
Translates to: VSARSSSCCRDSVDN*CPWLAQRAQGPWAD
Trigger: GTCTGCCCAAGGCCCCTGTGCGCGCTGTGCCAGCCAGGGGCAGCAGTTATCCACGGAGTCCCTGCAGCAGCTGCTGGAACGTGCGCTGAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS GCA 90 bp AACGGCCTCGTCTTGGGCCAACCGAAGGGTGGAGCTCAGGGCCTCTaGCCTGACGTGTTTGGCCAAGGCCTGGCGCTCCAGCTCCTGGGG +
Preference number: 5 (lower is better)
Translates to: NGLVLGQPKGGAQGL*PDVFGQGLALQLLG
Trigger: CCCCAGGAGCTGGAGCGCCAGGCCTTGGCCAAACACGTCAGGGCAGAGGCCCTGAGCTCCACCCTTCGGTTGGCCCAAGACGAGGCCGTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208475.2
CDS CCA 90 bp GGGAAGCAGGTGGCCCTGGCAGTGCCAGTGGACCACTGTCCTCTGTaGTCGAGTCTGTGCCCGAGGAGTCGGGCTCCACGGCAGCCAGGT +
Preference number: 5 (lower is better)
Translates to: GKQVALAVPVDHCPL*SSLCPRSRAPRQPG
Trigger: ACCTGGCTGCCGTGGAGCCCGACTCCTCGGGCACAGACTCGACCACAGAGGACAGTGGTCCACTGGCACTGCCAGGGCCACCTGCTTCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000207719.2
CDS CCA 90 bp GCCTCTGCCCTGACGTGTTTGGCCAAGGCCTGGCGCTCCAGCTCCTaGGGAGAGGAGTGTAGGCGCCGCTGGGCTTACTGGACTGGGCAG +
Preference number: 5 (lower is better)
Translates to: ASALTCLAKAWRSSS*GEECRRRWAYWTGQ
Trigger: CTGCCCAGTCCAGTAAGCCCAGCGGCGCCTACACTCCTCTCCCCAGGAGCTGGAGCGCCAGGCCTTGGCCAAACACGTCAGGGCAGAGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208475.2
CDS GCA 90 bp GAGGACACCTCCCTCCTCAGCTCCTCCAGGCCGGTGGAGACCTTCTaGAACTCCTGCTCGCTCAGCGAGGGTCCCTCCCCTGTGCGGACT +
Preference number: 5 (lower is better)
Translates to: EDTSLLSSSRPVETF*NSCSLSEGPSPVRT
Trigger: AGTCCGCACAGGGGAGGGACCCTCGCTGAGCGAGCAGGAGTTGCAGAAGGTCTCCACCGGCCTGGAGGAGCTGAGGAGGGAGGTGTCCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS GCA 90 bp TTCACCTCATCCACCAGCGGGGTCAGCGCACGTTCCAGCAGCTGCTaGAGGGACTCCGTGGATAACTGCTGCCCCTGGCTGGCACAGCGC +
Preference number: 5 (lower is better)
Translates to: FTSSTSGVSARSSSC*RDSVDNCCPWLAQR
Trigger: GCGCTGTGCCAGCCAGGGGCAGCAGTTATCCACGGAGTCCCTGCAGCAGCTGCTGGAACGTGCGCTGACCCCGCTGGTGGATGAGGTGAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS CCA 90 bp CCAGCAGCTGCTGCAGGGACTCCGTGGATAACTGCTGCCCCTGGCTaGCACAGCGCGCACAGGGGCCTTGGGCAGACCGATCCAAGTTCA +
Preference number: 5 (lower is better)
Translates to: PAAAAGTPWITAAPG*HSAHRGLGQTDPSS
Trigger: TGAACTTGGATCGGTCTGCCCAAGGCCCCTGTGCGCGCTGTGCCAGCCAGGGGCAGCAGTTATCCACGGAGTCCCTGCAGCAGCTGCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS GCA 90 bp GACACGTTGGTGCAGGCAGAGGACCGCTTGAGGTTCAGGCACCAGTaGATCGGCTCGTGGGACATCCGGGGCTCCACCCCATGGAAGGAC +
Preference number: 5 (lower is better)
Translates to: DTLVQAEDRLRFRHQ*IGSWDIRGSTPWKD
Trigger: GTCCTTCCATGGGGTGGAGCCCCGGATGTCCCACGAGCCGATGCACTGGTGCCTGAACCTCAAGCGGTCCTCTGCCTGCACCAACGTGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS GCA 90 bp CTCTCCACCATAGTGCACAACTCATCTGCTCGTCCTCGCAGCTCCTaGAAGCCCCTTGCGGACTGTGCCTGTTCCCGCTGCGCCCGCTCC +
Preference number: 5 (lower is better)
Translates to: LSTIVHNSSARPRSS*KPLADCACSRCARS
Trigger: GGAGCGGGCGCAGCGGGAACAGGCACAGTCCGCAAGGGGCTTGCAGGAGCTGCGAGGACGAGCAGATGAGTTGTGCACTATGGTGGAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS GCA 90 bp TGCTTCACCTCATCCACCAGCGGGGTCAGCGCACGTTCCAGCAGCTaGTGCAGGGACTCCGTGGATAACTGCTGCCCCTGGCTGGCACAG +
Preference number: 5 (lower is better)
Translates to: CFTSSTSGVSARSSS*CRDSVDNCCPWLAQ
Trigger: CTGTGCCAGCCAGGGGCAGCAGTTATCCACGGAGTCCCTGCAGCAGCTGCTGGAACGTGCGCTGACCCCGCTGGTGGATGAGGTGAAGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS GCA 90 bp AACGGCCTCGTCTTGGGCCAACCGAAGGGTGGAGCTCAGGGCCTCTaGCCTGACGTGTTTGGCCAAGGCCTGGCGCTCCAGCTCCAGAAT +
Preference number: 5 (lower is better)
Translates to: NGLVLGQPKGGAQGL*PDVFGQGLALQLQN
Trigger: ATTCTGGAGCTGGAGCGCCAGGCCTTGGCCAAACACGTCAGGGCAGAGGCCCTGAGCTCCACCCTTCGGTTGGCCCAAGACGAGGCCGTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CCA 90 bp AGGGTCCTCTGGAGCCCAGGGTGTTGTAGGGGAAGCAGGTGGCCCTaGCAGTGCCAGTGGACCACTGTCCTCTGTGGTCGAGTCTGTGCC +
Preference number: 5 (lower is better)
Translates to: RVLWSPGCCRGSRWP*QCQWTTVLCGRVCA
Trigger: GGCACAGACTCGACCACAGAGGACAGTGGTCCACTGGCACTGCCAGGGCCACCTGCTTCCCCTACAACACCCTGGGCTCCAGAGGACCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000207719.2
CDS CCA 90 bp GTTCCTCGGGGCTGCCAGGAGGACCCGAGCAGCCCTGAATGGGAGTaGCAGGGCTCAGACCATGTCGGGAGAGGCCAGCCTCCAGTTTTT +
Preference number: 5 (lower is better)
Translates to: VPRGCQEDPSSPEWE*QGSDHVGRGQPPVF
Trigger: AAAAACTGGAGGCTGGCCTCTCCCGACATGGTCTGAGCCCTGCCACTCCCATTCAGGGCTGCTCGGGTCCTCCTGGCAGCCCCGAGGAAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS TCA 90 bp CCTCGTCTTGGGCCAACCGAAGGGTGGAGCTCAGGGCCTCTGCCCTaGCGTGTTTGGCCAAGGCCTGGCGCTCCAGCTCCAGAATCTTCT +
Preference number: 5 (lower is better)
Translates to: PRLGPTEGWSSGPLP*RVWPRPGAPAPESS
Trigger: AGAAGATTCTGGAGCTGGAGCGCCAGGCCTTGGCCAAACACGTCAGGGCAGAGGCCCTGAGCTCCACCCTTCGGTTGGCCCAAGACGAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CCA 90 bp GATGTCAGGGTCCTCTGGAGCCCAGGGTGTTGTAGGGGAAGCAGGTaGCCCTGGCAGTGCCAGTGGACCACTGTCCTCTGTGGTCGAGTC +
Preference number: 5 (lower is better)
Translates to: DVRVLWSPGCCRGSR*PWQCQWTTVLCGRV
Trigger: GACTCGACCACAGAGGACAGTGGTCCACTGGCACTGCCAGGGCCACCTGCTTCCCCTACAACACCCTGGGCTCCAGAGGACCCTGACATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000207719.2
CDS CCA 90 bp ATCTTGTCCGTCAGCAGTAGGTTCTTGGCCCGAACGGCCTCGTCTTaGGCCAACCGAAGGGTGGAGCTCAGGGCCTCTGCCCTGACGTGT +
Preference number: 5 (lower is better)
Translates to: ILSVSSRFLARTASS*ANRRVELRASALTC
Trigger: ACACGTCAGGGCAGAGGCCCTGAGCTCCACCCTTCGGTTGGCCCAAGACGAGGCCGTTCGGGCCAAGAACCTACTGCTGACGGACAAGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS CCA 90 bp AGCTGGGCACGGCTTTCTACCCCCGCAGGTGGGTCCCCCGCTTCGTaGATCTCTTTGGATTGCCAGATTGTCTTCACCACCACGCTTGCC +
Preference number: 5 (lower is better)
Translates to: SWARLSTPAGGSPAS*ISLDCQIVFTTTLA
Trigger: GGCAAGCGTGGTGGTGAAGACAATCTGGCAATCCAAAGAGATCCACGAAGCGGGGGACCCACCTGCGGGGGTAGAAAGCCGTGCCCAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS-3UTR CAA 90 bp GAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCAGCGCGCACAGGGGCCTaGGGCAGACCGATCCAAGTT +
Preference number: 5 (lower is better)
Translates to: EAIYCSEPGLPRLGGAPPARTGA*GRPIQV
Trigger: AACTTGGATCGGTCTGCCCAAGGCCCCTGTGCGCGC...TGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CAA 90 bp AGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCCCGAACGGCCTCGTCTaGGGCCAACCGAAGGGTGGA +
Preference number: 5 (lower is better)
Translates to: RGHLLFRAWTPTFRGSPSPNGLV*GQPKGG
Trigger: TCCACCCTTCGGTTGGCCCAAGACGAGGCCGTTCGG...GGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CAA 90 bp CATTGCCCCCGTGGACCCCTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGACACTCCGGCTTCATCTaGTCCGTCAGCAGTAGGTTC +
Preference number: 5 (lower is better)
Translates to: HCPRGPLKWQVAELVVEGHSGFI*SVSSRF
Trigger: GAACCTACTGCTGACGGACAAGATGAAGCCGGAGTG...TCCCTCCACGACCAACTCAGCCACCTGCCACTTGAGGGGTCCACGGGGGCAATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CAA 90 bp GCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGGCGCGCACAGGGGCCTaGGGCAGACCGATCCAAGTT +
Preference number: 5 (lower is better)
Translates to: AIYCSEPGLPRLGGAPPLARTGA*GRPIQV
Trigger: AACTTGGATCGGTCTGCCCAAGGCCCCTGTGCGCGC...CAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CAA 90 bp GCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGTCTGCCCTGACGTGTTaGGCCAAGGCCTGGCGCTCC +
Preference number: 5 (lower is better)
Translates to: AIYCSEPGLPRLGGAPPLSALTC*AKAWRS
Trigger: GGAGCGCCAGGCCTTGGCCAAACACGTCAGGGCAGA...CAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CAA 90 bp GCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCCGAACGGCCTCGTCTaGGGCCAACCGAAGGGTGGA +
Preference number: 5 (lower is better)
Translates to: AIYCSEPGLPRLGGAPPLPNGLV*GQPKGG
Trigger: TCCACCCTTCGGTTGGCCCAAGACGAGGCCGTTCGG...CAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CAA 90 bp ATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCCCGGGAGTTCTGAAGTaGCCGTCCCAGCTCCTCCAG +
Preference number: 5 (lower is better)
Translates to: MRGHLLFRAWTPTFRGSPPGVLK*PSQLLQ
Trigger: CTGGAGGAGCTGGGACGGCAACTTCAGAACTCCCGG...GGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCAT
59% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CAA 90 bp ATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTTGAGCAAGGACACGTaGGTGCAGGCAGAGGACCGC +
Preference number: 5 (lower is better)
Translates to: MRGHLLFRAWTPTFRGSPLSKDT*VQAEDR
Trigger: GCGGTCCTCTGCCTGCACCAACGTGTCCTTGCTCAA...GGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CAA 90 bp ATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTTGCTCCTGCAAGCCCCTaGCGGACTGTGCCTGTTCCC +
Preference number: 5 (lower is better)
Translates to: IYCSEPGLPRLGGAPPLLAPASP*RTVPVP
Trigger: GGGAACAGGCACAGTCCGCAAGGGGCTTGCAGGAGC...AAGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CAA 90 bp AGCATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCGGGAGTTCTGAAGTaGCCGTCCCAGCTCCTCCAG +
Preference number: 5 (lower is better)
Translates to: SMRGHLLFRAWTPTFRGSPGVLK*PSQLLQ
Trigger: CTGGAGGAGCTGGGACGGCAACTTCAGAACTCCCGG...GCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCATGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CAA 90 bp TGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAATGCATATAGTCTCTGCCCTGACGTGTTaGGCCAAGGCCTGGCGCTCC +
Preference number: 5 (lower is better)
Translates to: WQVAELVVEGAHLQMHIVSALTC*AKAWRS
Trigger: GGAGCGCCAGGCCTTGGCCAAACACGTCAGGGCAGA...GACTATATGCATTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CAA 90 bp ATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTGGCAGGTGGCTGAGTaGGTCGTGGAGGGAGCACAT +
Preference number: 5 (lower is better)
Translates to: MRGHLLFRAWTPTFRGSPWQVAE*VVEGAH
Trigger: ATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCA...GGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208475.2
CDS-3UTR CAA 90 bp CTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAATGCATGTCAGCAGTAGGTTCTaGGCCCGAACGGCCTCGTCT +
Preference number: 5 (lower is better)
Translates to: LKWQVAELVVEGAHLQMHVSSRF*ARTASS
Trigger: AGACGAGGCCGTTCGGGCCAAGAACCTACTGCTGAC...ATGCATTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CAA 90 bp CATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTGTCAGCAGTAGGTTCTaGGCCCGAACGGCCTCGTCT +
Preference number: 5 (lower is better)
Translates to: HLLFRAWTPTFRGSPSIAVSSRF*ARTASS
Trigger: AGACGAGGCCGTTCGGGCCAAGAACCTACTGCTGAC...AGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000208475.2
CDS-3UTR CAA 90 bp ATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTTTTTCGTTATCCCTTaGGCAGGGCTGGTCACCCCC +
Preference number: 5 (lower is better)
Translates to: MRGHLLFRAWTPTFRGSPFFVIP*AGLVTP
Trigger: GGGGGTGACCAGCCCTGCCAAAGGGATAACGAAAAA...GGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CAA 90 bp AAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAATGCATATACAGGCAGAGGACCGCTaGAGGTTCAGGCACCAGTGC +
Preference number: 5 (lower is better)
Translates to: KWQVAELVVEGAHLQMHIQAEDR*RFRHQC
Trigger: GCACTGGTGCCTGAACCTCAAGCGGTCCTCTGCCTG...TATATGCATTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CAA 90 bp GAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCACTGGTGATGGAGTCTTaGGCACGTACCAATCCACTG +
Preference number: 5 (lower is better)
Translates to: EAIYCSEPGLPRLGGAPPLVMES*ARTNPL
Trigger: CAGTGGATTGGTACGTGCCAAAGACTCCATCACCAG...TGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CAA 90 bp GCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGGCCAGCCTCCAGTTTTaGCTCCAACTCCTGCAACTC +
Preference number: 5 (lower is better)
Translates to: AIYCSEPGLPRLGGAPPLASLQF*LQLLQL
Trigger: GAGTTGCAGGAGTTGGAGCAAAAACTGGAGGCTGGC...CAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CAA 90 bp GCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTTTGGATTGCCAGATaGTCTTCACCACCACGCTTG +
Preference number: 5 (lower is better)
Translates to: AIYCSEPGLPRLGGAPPLLWIAR*SSPPRL
Trigger: CAAGCGTGGTGGTGAAGACAATCTGGCAATCCAAAG...CAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CAA 90 bp ATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTTACTGAACGGGTCACCTaGCGGCAGTTCTCCTTCAAC +
Preference number: 5 (lower is better)
Translates to: IYCSEPGLPRLGGAPPLLTERVT*RQFSFN
Trigger: GTTGAAGGAGAACTGCCGCAAGGTGACCCGTTCAGT...AAGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CAA 90 bp ATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCAGCTCCAGAATCTTCTaGTGTAGCCTCTGGCAACTG +
Preference number: 5 (lower is better)
Translates to: MRGHLLFRAWTPTFRGSPSSRIF*CSLWQL
Trigger: CAGTTGCCAGAGGCTACACAAGAAGATTCTGGAGCT...GGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CAA 90 bp ATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTTTCCTCCGGCTTCATCTaGTCCGTCAGCAGTAGGTTC +
Preference number: 5 (lower is better)
Translates to: IYCSEPGLPRLGGAPPLLSSGFI*SVSSRF
Trigger: GAACCTACTGCTGACGGACAAGATGAAGCCGGAGGA...AAGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208475.2
CDS-3UTR CAA 90 bp AGCATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCTGGGCAGAATCTTCTaGTGTAGCCTCTGGCAACTG +
Preference number: 5 (lower is better)
Translates to: SMRGHLLFRAWTPTFRGSLGRIF*CSLWQL
Trigger: CAGTTGCCAGAGGCTACACAAGAAGATTCTGCCCAG...GCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCATGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208475.2
CDS TCA 90 bp GCTTCTCCTCCAGCAAGGCAGAGTTCTGCTTCAGGACATTGGTTTTaGTTTCAGCGTCTTCCACTGAACGGGTCACCTTGCGGCAGTTCT +
Preference number: 5 (lower is better)
Translates to: ASPPARQSSASGHWF*FQRLPLNGSPCGSS
Trigger: AGAACTGCCGCAAGGTGACCCGTTCAGTGGAAGACGCTGAAATCAAAACCAATGTCCTGAAGCAGAACTCTGCCTTGCTGGAGGAGAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS TCA 90 bp AGAGTTCTGCTTCAGGACATTGGTTTTGATTTCAGCGTCTTCCACTaGACGGGTCACCTTGCGGCAGTTCTCCTGGGTCAGGACATCAGG +
Preference number: 5 (lower is better)
Translates to: RVLLQDIGFDFSVFH*TGHLAAVLLGQDIR
Trigger: CCTGATGTCCTGACCCAGGAGAACTGCCGCAAGGTGACCCGTTCAGTGGAAGACGCTGAAATCAAAACCAATGTCCTGAAGCAGAACTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120929.9
CDS-3UTR CAA 90 bp CTCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAATGCATGCTTCGTGGATCTCTTaGGATTGCCAGATTGTCTTC +
Preference number: 5 (lower is better)
Translates to: LKWQVAELVVEGAHLQMHASWIS*DCQIVF
Trigger: GAAGACAATCTGGCAATCCAAAGAGATCCACGAAGC...ATGCATTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS GCA 90 bp TGCTGCTGGAGGTATCTTAGCTTCTCCTCCAGCAAGGCAGAGTTCTaGTTCAGGACATTGGTTTTGATTTCAGCGTCTTCCACTGAACGG +
Preference number: 5 (lower is better)
Translates to: CCWRYLSFSSSKAEF*FRTLVLISASSTER
Trigger: CCGTTCAGTGGAAGACGCTGAAATCAAAACCAATGTCCTGAAGCAGAACTCTGCCTTGCTGGAGGAGAAGCTAAGATACCTCCAGCAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS-3UTR CAA 90 bp TCAAGTGGCAGGTGGCTGAGTTGGTCGTGGAGGGAGCACATCTTCAAATGCATAGTGGATCTCTTTGGATaGCCAGATTGTCTTCACCAC +
Preference number: 5 (lower is better)
Translates to: SSGRWLSWSWREHIFKCIVDLFG*PDCLHH
Trigger: GTGGTGAAGACAATCTGGCAATCCAAAGAGATCCAC...TATGCATTTGAAGATGTGCTCCCTCCACGACCAACTCAGCCACCTGCCACTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CAA 90 bp GCCAGCATGAGAGGCCATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGTTCAGGACATTGGTTTaGATTTCAGCGTCTTCCACT +
Preference number: 5 (lower is better)
Translates to: ASMRGHLLFRAWTPTFRGFRTLV*ISASST
Trigger: AGTGGAAGACGCTGAAATCAAAACCAATGTCCTGAA...CCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATGGCCTCTCATGCTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS TCA 90 bp AGAGTTCTGCTTCAGGACATTGGTTTTGATTTCAGCGTCTTCCACTaGACGGGTCACCTTGCGGCAGTTCTCCTTCAACTGACTGCAGTA +
Preference number: 5 (lower is better)
Translates to: RVLLQDIGFDFSVFH*TGHLAAVLLQLTAV
Trigger: TACTGCAGTCAGTTGAAGGAGAACTGCCGCAAGGTGACCCGTTCAGTGGAAGACGCTGAAATCAAAACCAATGTCCTGAAGCAGAACTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS-3UTR CAA 90 bp CATTTATTGTTCAGAGCCTGGACTCCCACGTTTAGGGGGAGCCCCTCCATTGCTTTCTGCTTCAGGACATaGGTTTTGATTTCAGCGTCT +
Preference number: 5 (lower is better)
Translates to: HLLFRAWTPTFRGSPSIAFCFRT*VLISAS
Trigger: AGACGCTGAAATCAAAACCAATGTCCTGAAGCAGAA...AGCAATGGAGGGGCTCCCCCTAAACGTGGGAGTCCAGGCTCTGAACAATAAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS GCA 72 bp CGCTCAGCGAGGGTCCCTCCCCTGTGCGGACTGCCATaGCCCAGCCACTGGAGGACAGGCCTCGCTGCCGCG +
Preference number: 6 (lower is better)
Translates to: RSARVPPLCGLP*PSHWRTGLAAA
Trigger: CGCGGCAGCGAGGCCTGTCCTCCAGTGGCTGGGGCATGGCAGTCCGCACAGGGGAGGGACCCTCGCTGAGCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS GCA 72 bp CTGCTCGCTCAGCGAGGGTCCCTCCCCTGTGCGGACTaGCATGCCCCAGCCACTGGAGGACAGGCCTCGCTG +
Preference number: 6 (lower is better)
Translates to: LLAQRGSLPCAD*HAPATGGQASL
Trigger: CAGCGAGGCCTGTCCTCCAGTGGCTGGGGCATGGCAGTCCGCACAGGGGAGGGACCCTCGCTGAGCGAGCAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CCA 72 bp CCTCGGGGCTGCCAGGAGGACCCGAGCAGCCCTGAATaGGAGTGGCAGGGCTCAGACCATGTCGGGAGAGGC +
Preference number: 6 (lower is better)
Translates to: PRGCQEDPSSPE*EWQGSDHVGRG
Trigger: GCCTCTCCCGACATGGTCTGAGCCCTGCCACTCCCATTCAGGGCTGCTCGGGTCCTCCTGGCAGCCCCGAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS TCA 72 bp GGGCCAACCGAAGGGTGGAGCTCAGGGCCTCTGCCCTaGCGTGTTTGGCCAAGGCCTGGCGCTCCAGCTCCA +
Preference number: 6 (lower is better)
Translates to: GPTEGWSSGPLP*RVWPRPGAPAP
Trigger: TGGAGCTGGAGCGCCAGGCCTTGGCCAAACACGTCAGGGCAGAGGCCCTGAGCTCCACCCTTCGGTTGGCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS TCA 72 bp GGGCCAACCGAAGGGTGGAGCTCAGGGCCTCTGCCCTaGCGTGTTTGGCCAAGGCCTGGCGCTCCAGCTCCT +
Preference number: 6 (lower is better)
Translates to: GPTEGWSSGPLP*RVWPRPGAPAP
Trigger: AGGAGCTGGAGCGCCAGGCCTTGGCCAAACACGTCAGGGCAGAGGCCCTGAGCTCCACCCTTCGGTTGGCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208475.2
CDS GCA 72 bp CTCATCTGCTCGTCCTCGCAGCTCCTGCAAGCCCCTTaGGGACTGTGCCTGTTCCCGCTGCGCCCGCTCCCA +
Preference number: 6 (lower is better)
Translates to: LICSSSQLLQAP*GLCLFPLRPLP
Trigger: TGGGAGCGGGCGCAGCGGGAACAGGCACAGTCCGCAAGGGGCTTGCAGGAGCTGCGAGGACGAGCAGATGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS GCA 72 bp TCCAGCAGCTGCTGCAGGGACTCCGTGGATAACTGCTaGCCCTGGCTGGCACAGCGCGCACAGGGGCCTTGG +
Preference number: 6 (lower is better)
Translates to: SSSCCRDSVDNC*PWLAQRAQGPW
Trigger: CCAAGGCCCCTGTGCGCGCTGTGCCAGCCAGGGGCAGCAGTTATCCACGGAGTCCCTGCAGCAGCTGCTGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS GCA 72 bp CGTTCCAGCAGCTGCTGCAGGGACTCCGTGGATAACTaGTGCCCCTGGCTGGCACAGCGCGCACAGGGGCCT +
Preference number: 6 (lower is better)
Translates to: RSSSCCRDSVDN*CPWLAQRAQGP
Trigger: AGGCCCCTGTGCGCGCTGTGCCAGCCAGGGGCAGCAGTTATCCACGGAGTCCCTGCAGCAGCTGCTGGAACG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS CCA 72 bp GGCTGCCAGGAGGACCCGAGCAGCCCTGAATGGGAGTaGCAGGGCTCAGACCATGTCGGGAGAGGCCAGCCT +
Preference number: 6 (lower is better)
Translates to: GCQEDPSSPEWE*QGSDHVGRGQP
Trigger: AGGCTGGCCTCTCCCGACATGGTCTGAGCCCTGCCACTCCCATTCAGGGCTGCTCGGGTCCTCCTGGCAGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CCA 72 bp GCTGCAGGGACTCCGTGGATAACTGCTGCCCCTGGCTaGCACAGCGCGCACAGGGGCCTTGGGCAGACCGAT +
Preference number: 6 (lower is better)
Translates to: AAGTPWITAAPG*HSAHRGLGQTD
Trigger: ATCGGTCTGCCCAAGGCCCCTGTGCGCGCTGTGCCAGCCAGGGGCAGCAGTTATCCACGGAGTCCCTGCAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS TCA 72 bp CTGTGCCCGAGGAGTCGGGCTCCACGGCAGCCAGGTTaGGCAAGGACACGTTGGTGCAGGCAGAGGACCGCT +
Preference number: 6 (lower is better)
Translates to: LCPRSRAPRQPG*ARTRWCRQRTA
Trigger: AGCGGTCCTCTGCCTGCACCAACGTGTCCTTGCTCAACCTGGCTGCCGTGGAGCCCGACTCCTCGGGCACAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000207719.2
CDS GCA 72 bp GTGCAGGCAGAGGACCGCTTGAGGTTCAGGCACCAGTaGATCGGCTCGTGGGACATCCGGGGCTCCACCCCA +
Preference number: 6 (lower is better)
Translates to: VQAEDRLRFRHQ*IGSWDIRGSTP
Trigger: TGGGGTGGAGCCCCGGATGTCCCACGAGCCGATGCACTGGTGCCTGAACCTCAAGCGGTCCTCTGCCTGCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS GCA 72 bp AGCTCCTCCAGGCCGGTGGAGACCTTCTGCAACTCCTaGTCGCTCAGCGAGGGTCCCTCCCCTGTGCGGACT +
Preference number: 6 (lower is better)
Translates to: SSSRPVETFCNS*SLSEGPSPVRT
Trigger: AGTCCGCACAGGGGAGGGACCCTCGCTGAGCGAGCAGGAGTTGCAGAAGGTCTCCACCGGCCTGGAGGAGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS GCA 72 bp TCCACCAGCGGGGTCAGCGCACGTTCCAGCAGCTGCTaGAGGGACTCCGTGGATAACTGCTGCCCCTGGCTG +
Preference number: 6 (lower is better)
Translates to: STSGVSARSSSC*RDSVDNCCPWL
Trigger: CAGCCAGGGGCAGCAGTTATCCACGGAGTCCCTGCAGCAGCTGCTGGAACGTGCGCTGACCCCGCTGGTGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS GCA 72 bp GTCTTGGGCCAACCGAAGGGTGGAGCTCAGGGCCTCTaGCCTGACGTGTTTGGCCAAGGCCTGGCGCTCCAG +
Preference number: 6 (lower is better)
Translates to: VLGQPKGGAQGL*PDVFGQGLALQ
Trigger: CTGGAGCGCCAGGCCTTGGCCAAACACGTCAGGGCAGAGGCCCTGAGCTCCACCCTTCGGTTGGCCCAAGAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS GCA 72 bp TCATCCACCAGCGGGGTCAGCGCACGTTCCAGCAGCTaGTGCAGGGACTCCGTGGATAACTGCTGCCCCTGG +
Preference number: 6 (lower is better)
Translates to: SSTSGVSARSSS*CRDSVDNCCPW
Trigger: CCAGGGGCAGCAGTTATCCACGGAGTCCCTGCAGCAGCTGCTGGAACGTGCGCTGACCCCGCTGGTGGATGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS CCA 72 bp GTCAGCAGTAGGTTCTTGGCCCGAACGGCCTCGTCTTaGGCCAACCGAAGGGTGGAGCTCAGGGCCTCTGCC +
Preference number: 6 (lower is better)
Translates to: VSSRFLARTASS*ANRRVELRASA
Trigger: GGCAGAGGCCCTGAGCTCCACCCTTCGGTTGGCCCAAGACGAGGCCGTTCGGGCCAAGAACCTACTGCTGAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS CAA 90 bp GCAGCCAGGTTGAGCAAGGACACGTTGGTGCAGGCAGAGGACCGCTaGAGGTTCAGGCACCAGTGCATCGGCTCGTGGGACATCCGGGGC +
Preference number: 6 (lower is better)
Translates to: AARLSKDTLVQAEDR*RFRHQCIGSWDIRG
Trigger: GCCCCGGATGTCCCACGAGCCGATGCACTGGTGCCTGAACCTCAAGCGGTCCTCTGCCTGCACCAACGTGTCCTTGCTCAACCTGGCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CAA 90 bp CCCGAGGAGTCGGGCTCCACGGCAGCCAGGTTGAGCAAGGACACGTaGGTGCAGGCAGAGGACCGCTTGAGGTTCAGGCACCAGTGCATC +
Preference number: 6 (lower is better)
Translates to: PEESGSTAARLSKDT*VQAEDRLRFRHQCI
Trigger: GATGCACTGGTGCCTGAACCTCAAGCGGTCCTCTGCCTGCACCAACGTGTCCTTGCTCAACCTGGCTGCCGTGGAGCCCGACTCCTCGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000207719.2
CDS CCA 72 bp GACCGCTTGAGGTTCAGGCACCAGTGCATCGGCTCGTaGGACATCCGGGGCTCCACCCCATGGAAGGACACA +
Preference number: 6 (lower is better)
Translates to: DRLRFRHQCIGS*DIRGSTPWKDT
Trigger: TGTGTCCTTCCATGGGGTGGAGCCCCGGATGTCCCACGAGCCGATGCACTGGTGCCTGAACCTCAAGCGGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CAA 90 bp TGGGCCAACCGAAGGGTGGAGCTCAGGGCCTCTGCCCTGACGTGTTaGGCCAAGGCCTGGCGCTCCAGCTCCAGAATCTTCTTGTGTAGC +
Preference number: 6 (lower is better)
Translates to: WANRRVELRASALTC*AKAWRSSSRIFLCS
Trigger: GCTACACAAGAAGATTCTGGAGCTGGAGCGCCAGGCCTTGGCCAAACACGTCAGGGCAGAGGCCCTGAGCTCCACCCTTCGGTTGGCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CCA 72 bp CCTCCGGCTTCATCTTGTCCGTCAGCAGTAGGTTCTTaGCCCGAACGGCCTCGTCTTGGGCCAACCGAAGGG +
Preference number: 6 (lower is better)
Translates to: PPASSCPSAVGS*PERPRLGPTEG
Trigger: CCCTTCGGTTGGCCCAAGACGAGGCCGTTCGGGCCAAGAACCTACTGCTGACGGACAAGATGAAGCCGGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS GCA 72 bp CTCAGACCATGTCGGGAGAGGCCAGCCTCCAGTTTTTaGTCCAACTCCTGCAACTCGGCCTCCTGTCTCCGG +
Preference number: 6 (lower is better)
Translates to: LRPCRERPASSF*SNSCNSASCLR
Trigger: CCGGAGACAGGAGGCCGAGTTGCAGGAGTTGGAGCAAAAACTGGAGGCTGGCCTCTCCCGACATGGTCTGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS GCA 72 bp ATAGTGCACAACTCATCTGCTCGTCCTCGCAGCTCCTaGAAGCCCCTTGCGGACTGTGCCTGTTCCCGCTGC +
Preference number: 6 (lower is better)
Translates to: IVHNSSARPRSS*KPLADCACSRC
Trigger: GCAGCGGGAACAGGCACAGTCCGCAAGGGGCTTGCAGGAGCTGCGAGGACGAGCAGATGAGTTGTGCACTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CCA 72 bp CCCCCGCAGGTGGGTCCCCCGCTTCGTGGATCTCTTTaGATTGCCAGATTGTCTTCACCACCACGCTTGCCA +
Preference number: 6 (lower is better)
Translates to: PPQVGPPLRGSL*IARLSSPPRLP
Trigger: TGGCAAGCGTGGTGGTGAAGACAATCTGGCAATCCAAAGAGATCCACGAAGCGGGGGACCCACCTGCGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CCA 72 bp ACTCCGGCTTCATCTTGTCCGTCAGCAGTAGGTTCTTaGCCCGAACGGCCTCGTCTTGGGCCAACCGAAGGG +
Preference number: 6 (lower is better)
Translates to: TPASSCPSAVGS*PERPRLGPTEG
Trigger: CCCTTCGGTTGGCCCAAGACGAGGCCGTTCGGGCCAAGAACCTACTGCTGACGGACAAGATGAAGCCGGAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS CAA 72 bp ACCCCCGCAGGTGGGTCCCCCGCTTCGTGGATCTCTTaGGATTGCCAGATTGTCTTCACCACCACGCTTGCC +
Preference number: 6 (lower is better)
Translates to: TPAGGSPASWIS*DCQIVFTTTLA
Trigger: GGCAAGCGTGGTGGTGAAGACAATCTGGCAATCCAAAGAGATCCACGAAGCGGGGGACCCACCTGCGGGGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CAA 72 bp TTGAGCAAGGACACGTTGGTGCAGGCAGAGGACCGCTaGAGGTTCAGGCACCAGTGCATCGGCTCGTGGGAC +
Preference number: 6 (lower is better)
Translates to: LSKDTLVQAEDR*RFRHQCIGSWD
Trigger: GTCCCACGAGCCGATGCACTGGTGCCTGAACCTCAAGCGGTCCTCTGCCTGCACCAACGTGTCCTTGCTCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000207719.2
CDS CAA 72 bp GCTCAGACCATGTCGGGAGAGGCCAGCCTCCAGTTTTaGCTCCAACTCCTGCAACTCGGCCTCCTGTCTCCG +
Preference number: 6 (lower is better)
Translates to: AQTMSGEASLQF*LQLLQLGLLSP
Trigger: CGGAGACAGGAGGCCGAGTTGCAGGAGTTGGAGCAAAAACTGGAGGCTGGCCTCTCCCGACATGGTCTGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CAA 72 bp CACTCCGGCTTCATCTTGTCCGTCAGCAGTAGGTTCTaGGCCCGAACGGCCTCGTCTTGGGCCAACCGAAGG +
Preference number: 6 (lower is better)
Translates to: HSGFILSVSSRF*ARTASSWANRR
Trigger: CCTTCGGTTGGCCCAAGACGAGGCCGTTCGGGCCAAGAACCTACTGCTGACGGACAAGATGAAGCCGGAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS CAA 72 bp TCCTCCGGCTTCATCTTGTCCGTCAGCAGTAGGTTCTaGGCCCGAACGGCCTCGTCTTGGGCCAACCGAAGG +
Preference number: 6 (lower is better)
Translates to: SSGFILSVSSRF*ARTASSWANRR
Trigger: CCTTCGGTTGGCCCAAGACGAGGCCGTTCGGGCCAAGAACCTACTGCTGACGGACAAGATGAAGCCGGAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS CCA 72 bp CGGCTTTCTACCCCCGCAGGTGGGTCCCCCGCTTCGTaGATCTCTTTGGATTGCCAGATTGTCTTCACCACC +
Preference number: 6 (lower is better)
Translates to: RLSTPAGGSPAS*ISLDCQIVFTT
Trigger: GGTGGTGAAGACAATCTGGCAATCCAAAGAGATCCACGAAGCGGGGGACCCACCTGCGGGGGTAGAAAGCCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CAA 72 bp CAAGACATGGTCAGCTCCCCTCCGGGAGTTCTGAAGTaGCCGTCCCAGCTCCTCCAGAATGGGTTTTACTGG +
Preference number: 6 (lower is better)
Translates to: QDMVSSPPGVLK*PSQLLQNGFYW
Trigger: CCAGTAAAACCCATTCTGGAGGAGCTGGGACGGCAACTTCAGAACTCCCGGAGGGGAGCTGACCATGTCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS CAA 72 bp GTTTTGATTTCAGCGTCTTCCACTGAACGGGTCACCTaGCGGCAGTTCTCCTGGGTCAGGACATCAGGGCGG +
Preference number: 6 (lower is better)
Translates to: VLISASSTERVT*RQFSWVRTSGR
Trigger: CCGCCCTGATGTCCTGACCCAGGAGAACTGCCGCAAGGTGACCCGTTCAGTGGAAGACGCTGAAATCAAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120929.9
CDS TCA 72 bp AAGTTCAAGACATGGTCAGCTCCCCTCCGGGAGTTCTaGAGTTGCCGTCCCAGCTCCTCCAGAATGGGTTTT +
Preference number: 6 (lower is better)
Translates to: KFKTWSAPLREF*SCRPSSSRMGF
Trigger: AAAACCCATTCTGGAGGAGCTGGGACGGCAACTTCAGAACTCCCGGAGGGGAGCTGACCATGTCTTGAACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000208475.2
CDS CAA 90 bp TCCTTCAAGCTGGTGATGGAGTCTTTGGCACGTACCAATCCACTGTaGACCCCACTCAGTAGTTCTGTGATGTCAGGGTCCTCTGGAGCC +
Preference number: 6 (lower is better)
Translates to: SFKLVMESLARTNPL*TPLSSSVMSGSSGA
Trigger: GGCTCCAGAGGACCCTGACATCACAGAACTACTGAGTGGGGTCAACAGTGGATTGGTACGTGCCAAAGACTCCATCACCAGCTTGAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000207719.2
CDS TCA 72 bp CTTCAGGACATTGGTTTTGATTTCAGCGTCTTCCACTaGACGGGTCACCTTGCGGCAGTTCTCCTGGGTCAG +
Preference number: 6 (lower is better)
Translates to: LQDIGFDFSVFH*TGHLAAVLLGQ
Trigger: CTGACCCAGGAGAACTGCCGCAAGGTGACCCGTTCAGTGGAAGACGCTGAAATCAAAACCAATGTCCTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120929.9
CDS CAA 72 bp CTGGTGATGGAGTCTTTGGCACGTACCAATCCACTGTaGACCCCACTCAGTAGTTCTGTGATGTCAGGGTCC +
Preference number: 6 (lower is better)
Translates to: LVMESLARTNPL*TPLSSSVMSGS
Trigger: GGACCCTGACATCACAGAACTACTGAGTGGGGTCAACAGTGGATTGGTACGTGCCAAAGACTCCATCACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000207719.2
CDS CAA 72 bp CGCGTGGTCTTTTCCTTCAAGCTGGTGATGGAGTCTTaGGCACGTACCAATCCACTGTTGACCCCACTCAGT +
Preference number: 6 (lower is better)
Translates to: RVVFSFKLVMES*ARTNPLLTPLS
Trigger: ACTGAGTGGGGTCAACAGTGGATTGGTACGTGCCAAAGACTCCATCACCAGCTTGAAGGAAAAGACCACGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
ENSMUST00000207719.2
CDS CAA 90 bp AGCTTCTCCTCCAGCAAGGCAGAGTTCTGCTTCAGGACATTGGTTTaGATTTCAGCGTCTTCCACTGAACGGGTCACCTTGCGGCAGTTC +
Preference number: 6 (lower is better)
Translates to: SFSSSKAEFCFRTLV*ISASSTERVTLRQF
Trigger: GAACTGCCGCAAGGTGACCCGTTCAGTGGAAGACGCTGAAATCAAAACCAATGTCCTGAAGCAGAACTCTGCCTTGCTGGAGGAGAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS TCA 72 bp CCAGCAAGGCAGAGTTCTGCTTCAGGACATTGGTTTTaGTTTCAGCGTCTTCCACTGAACGGGTCACCTTGC +
Preference number: 6 (lower is better)
Translates to: PARQSSASGHWF*FQRLPLNGSPC
Trigger: GCAAGGTGACCCGTTCAGTGGAAGACGCTGAAATCAAAACCAATGTCCTGAAGCAGAACTCTGCCTTGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS CAA 90 bp TATCTTAGCTTCTCCTCCAGCAAGGCAGAGTTCTGCTTCAGGACATaGGTTTTGATTTCAGCGTCTTCCACTGAACGGGTCACCTTGCGG +
Preference number: 6 (lower is better)
Translates to: YLSFSSSKAEFCFRT*VLISASSTERVTLR
Trigger: CCGCAAGGTGACCCGTTCAGTGGAAGACGCTGAAATCAAAACCAATGTCCTGAAGCAGAACTCTGCCTTGCTGGAGGAGAAGCTAAGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9
CDS TCA 72 bp CTTCAGGACATTGGTTTTGATTTCAGCGTCTTCCACTaGACGGGTCACCTTGCGGCAGTTCTCCTTCAACTG +
Preference number: 6 (lower is better)
Translates to: LQDIGFDFSVFH*TGHLAAVLLQL
Trigger: CAGTTGAAGGAGAACTGCCGCAAGGTGACCCGTTCAGTGGAAGACGCTGAAATCAAAACCAATGTCCTGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080233.9
CDS GCA 72 bp AGGTATCTTAGCTTCTCCTCCAGCAAGGCAGAGTTCTaGTTCAGGACATTGGTTTTGATTTCAGCGTCTTCC +
Preference number: 6 (lower is better)
Translates to: RYLSFSSSKAEF*FRTLVLISASS
Trigger: GGAAGACGCTGAAATCAAAACCAATGTCCTGAAGCAGAACTCTGCCTTGCTGGAGGAGAAGCTAAGATACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080233.9
ENSMUST00000120929.9