Pregenerated sensors for TSHB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027857Ensembl transcript IDs: ENSMUST00000029450.10, ENSMUST00000170856.6, ENSMUST00000172026.8, ENSMUST00000197322.2, ENSMUST00000200041.5
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTATTGAAGCACAGATGGTGGTGTTaGTGGTCAGGCAGTAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: LFVLFQVNTFNQIALLLKHRWWC*WSGSRH Trigger: GTGCCTACTGCCTGACCATCAACACCACCATCTGTG...CTTCAATAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR TCA 90 bp | GGTATTTTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTACACAGATGGTGGTGTTaGTGGTCAGGCAGTAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: GILFVLFQVNTFNQIALLHRWWC*WSGSRH Trigger: GTGCCTACTGCCTGACCATCAACACCACCATCTGTG...TAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAAAATACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR GCA 90 bp | TTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTATTGAAGTACACTTGCCACACTTaGAGCTTATGGCGACAGGGA | + |
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Preference number: 4 (lower is better) Translates to: LFVLFQVNTFNQIALLLKYTCHT*SLWRQG Trigger: TCCCTGTCGCCATAAGCTGCAAGTGTGGCAAGTGTA...CTTCAATAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR GCA 90 bp | GGTATTTTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTATACACTTGCCACACTTaGAGCTTATGGCGACAGGGA | + |
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Preference number: 4 (lower is better) Translates to: GILFVLFQVNTFNQIALLYTCHT*SLWRQG Trigger: TCCCTGTCGCCATAAGCTGCAAGTGTGGCAAGTGTA...TAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAAAATACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR GCA 90 bp | GGTATTTTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTAGGGAATACAAAAGGATaGTGCTTGCCCACAAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: GILFVLFQVNTFNQIALLGNTKG*CLPTSK Trigger: CTTGCTTGTGGGCAAGCAGCATCCTTTTGTATTCCC...TAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAAAATACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR GCA 90 bp | GGTATTTTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTACAAAAGGATGCTGCTTaGCCACAAGCAAGAGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: GILFVLFQVNTFNQIALLQKDAA*PQARAK Trigger: TTTTGCTCTTGCTTGTGGGCAAGCAGCATCCTTTTG...TAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAAAATACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR GCA 90 bp | TTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTATTGAAGCAAAAGGATGCTGCTTaGCCACAAGCAAGAGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: LFVLFQVNTFNQIALLLKQKDAA*PQARAK Trigger: TTTTGCTCTTGCTTGTGGGCAAGCAGCATCCTTTTG...CTTCAATAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS GCA 90 bp | TCCACGTACATTGTATACTCAGTGGGAATACAAAAGGATGCTGCTTaGCCACAAGCAAGAGCAAAAAGCACGGAGAGGAGGACGGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: STYIVYSVGIQKDAA*PQARAKSTERRTAA Trigger: TGCTGCCGTCCTCCTCTCCGTGCTTTTTGCTCTTGCTTGTGGGCAAGCAGCATCCTTTTGTATTCCCACTGAGTATACAATGTACGTGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS GCA 90 bp | CCTATCCACGTACATTGTATACTCAGTGGGAATACAAAAGGATGCTaGTTGCCCACAAGCAAGAGCAAAAAGCACGGAGAGGAGGACGGC | + |
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Preference number: 5 (lower is better) Translates to: PIHVHCILSGNTKGC*LPTSKSKKHGEEDG Trigger: GCCGTCCTCCTCTCCGTGCTTTTTGCTCTTGCTTGTGGGCAAGCAGCATCCTTTTGTATTCCCACTGAGTATACAATGTACGTGGATAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS CCA 90 bp | GGCGACAGGGAAGGAGAAATAAGGAGTAACATGGTGCGGGCATCCTaGTATTTCCACCGTTCTGTAGATGAAGTCTCTGTATGTACAGAC | + |
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Preference number: 5 (lower is better) Translates to: GDREGEIRSNMVRAS*YFHRSVDEVSVCTD Trigger: GTCTGTACATACAGAGACTTCATCTACAGAACGGTGGAAATACCAGGATGCCCGCACCATGTTACTCCTTATTTCTCCTTCCCTGTCGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS GCA 90 bp | TCTCCTATCCACGTACATTGTATACTCAGTGGGAATACAAAAGGATaGTGCTTGCCCACAAGCAAGAGCAAAAAGCACGGAGAGGAGGAC | + |
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Preference number: 5 (lower is better) Translates to: SPIHVHCILSGNTKG*CLPTSKSKKHGEED Trigger: GTCCTCCTCTCCGTGCTTTTTGCTCTTGCTTGTGGGCAAGCAGCATCCTTTTGTATTCCCACTGAGTATACAATGTACGTGGATAGGAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS CCA 90 bp | GGCAGTAGGCACACTCTCTCCTATCCACGTACATTGTATACTCAGTaGGAATACAAAAGGATGCTGCTTGCCCACAAGCAAGAGCAAAAA | + |
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Preference number: 5 (lower is better) Translates to: GSRHTLSYPRTLYTQ*EYKRMLLAHKQEQK Trigger: TTTTTGCTCTTGCTTGTGGGCAAGCAGCATCCTTTTGTATTCCCACTGAGTATACAATGTACGTGGATAGGAGAGAGTGTGCCTACTGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS GCA 90 bp | CGTTCTGTAGATGAAGTCTCTGTATGTACAGACATCCTGAGAGAGTaGATATTTGGGAAGAAACAGTTTGCCATTGATATCCCGTGTCAT | + |
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Preference number: 5 (lower is better) Translates to: RSVDEVSVCTDILRE*IFGKKQFAIDIPCH Trigger: ATGACACGGGATATCAATGGCAAACTGTTTCTTCCCAAATATGCACTCTCTCAGGATGTCTGTACATACAGAGACTTCATCTACAGAACG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS-3UTR CAA 90 bp | GGTATTTTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTATTACACTTGCCACACTaGCAGCTTATGGCGACAGGG | + |
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Preference number: 5 (lower is better) Translates to: GILFVLFQVNTFNQIALLLHLPH*QLMATG Trigger: CCCTGTCGCCATAAGCTGCAAGTGTGGCAAGTGTAA...TAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAAAATACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR CAA 90 bp | TTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTATTGAAGTTACACTTGCCACACTaGCAGCTTATGGCGACAGGG | + |
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Preference number: 5 (lower is better) Translates to: LFVLFQVNTFNQIALLLKLHLPH*QLMATG Trigger: CCCTGTCGCCATAAGCTGCAAGTGTGGCAAGTGTAA...CTTCAATAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR CAA 90 bp | TTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTATTGAAGACAAAAGGATGCTGCTaGCCCACAAGCAAGAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: LFVLFQVNTFNQIALLLKTKGCC*PTSKSK Trigger: TTTGCTCTTGCTTGTGGGCAAGCAGCATCCTTTTGT...CTTCAATAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR CAA 90 bp | GGTATTTTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTAACAAAAGGATGCTGCTaGCCCACAAGCAAGAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: GILFVLFQVNTFNQIALLTKGCC*PTSKSK Trigger: TTTGCTCTTGCTTGTGGGCAAGCAGCATCCTTTTGT...TAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAAAATACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR CAA 90 bp | GGTATTTTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTATTGGGAAGAAACAGTTaGCCATTGATATCCCGTGTC | + |
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Preference number: 5 (lower is better) Translates to: GILFVLFQVNTFNQIALLLGRNS*PLISRV Trigger: GACACGGGATATCAATGGCAAACTGTTTCTTCCCAA...TAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAAAATACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR CAA 90 bp | TTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTATTGAAGTTGGGAAGAAACAGTTaGCCATTGATATCCCGTGTC | + |
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Preference number: 5 (lower is better) Translates to: LFVLFQVNTFNQIALLLKLGRNS*PLISRV Trigger: GACACGGGATATCAATGGCAAACTGTTTCTTCCCAA...CTTCAATAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR CAA 90 bp | GGTATTTTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTATCCTATCCACGTACATaGTATACTCAGTGGGAATAC | + |
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Preference number: 5 (lower is better) Translates to: GILFVLFQVNTFNQIALLSYPRT*YTQWEY Trigger: GTATTCCCACTGAGTATACAATGTACGTGGATAGGA...TAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAAAATACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR CAA 90 bp | GGTATTTTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTATTGTCAGTATTACACTaGCCACACTTGCAGCTTATG | + |
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Preference number: 5 (lower is better) Translates to: GILFVLFQVNTFNQIALLLSVLH*PHLQLM Trigger: CATAAGCTGCAAGTGTGGCAAGTGTAATACTGACAA...TAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAAAATACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR CAA 90 bp | GGTATTTTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTATGTATGCAGTCACTGTaGTCAGTATTACACTTGCCA | + |
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Preference number: 5 (lower is better) Translates to: GILFVLFQVNTFNQIALLCMQSL*SVLHLP Trigger: TGGCAAGTGTAATACTGACAACAGTGACTGCATACA...TAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAAAATACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR CAA 90 bp | GGTATTTTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTAAGAAACAGTTTGCCATaGATATCCCGTGTCATACAA | + |
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Preference number: 5 (lower is better) Translates to: GILFVLFQVNTFNQIALLRNSLP*ISRVIQ Trigger: TTGTATGACACGGGATATCAATGGCAAACTGTTTCT...TAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAAAATACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS-3UTR CAA 90 bp | TTATTCGTTCTATTCCAGGTAAACACATTTAACCAGATTGCACTGCTATTGAAGAGAAACAGTTTGCCATaGATATCCCGTGTCATACAA | + |
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Preference number: 5 (lower is better) Translates to: LFVLFQVNTFNQIALLLKRNSLP*ISRVIQ Trigger: TTGTATGACACGGGATATCAATGGCAAACTGTTTCT...CTTCAATAGCAGTGCAATCTGGTTAAATGTGTTTACCTGGAATAGAACGAATAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 |
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| CDS TCA 72 bp | CCCGTGTCATACAATACCCAGCACAGATGGTGGTGTTaGTGGTCAGGCAGTAGGCACACTCTCTCCTATCCA | + |
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Preference number: 6 (lower is better) Translates to: PVSYNTQHRWWC*WSGSRHTLSYP Trigger: TGGATAGGAGAGAGTGTGCCTACTGCCTGACCATCAACACCACCATCTGTGCTGGGTATTGTATGACACGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS CAA 72 bp | GCCTCGTGTATGCAGTCACTGTTGTCAGTATTACACTaGCCACACTTGCAGCTTATGGCGACAGGGAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: ASCMQSLLSVLH*PHLQLMATGKE Trigger: CTCCTTCCCTGTCGCCATAAGCTGCAAGTGTGGCAAGTGTAATACTGACAACAGTGACTGCATACACGAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS CAA 90 bp | ATCCACGTACATTGTATACTCAGTGGGAATACAAAAGGATGCTGCTaGCCCACAAGCAAGAGCAAAAAGCACGGAGAGGAGGACGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: IHVHCILSGNTKGCC*PTSKSKKHGEEDGS Trigger: GCTGCCGTCCTCCTCTCCGTGCTTTTTGCTCTTGCTTGTGGGCAAGCAGCATCCTTTTGTATTCCCACTGAGTATACAATGTACGTGGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS GCA 72 bp | CCTCGTGTATGCAGTCACTGTTGTCAGTATTACACTTaGCACACTTGCAGCTTATGGCGACAGGGAAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: PRVCSHCCQYYT*HTCSLWRQGRR Trigger: TCTCCTTCCCTGTCGCCATAAGCTGCAAGTGTGGCAAGTGTAATACTGACAACAGTGACTGCATACACGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS TCA 72 bp | GATAGAAAGACTGCGGCTTGGTGCAGTAGTTGGTTCTaGCAGCCTCGTGTATGCAGTCACTGTTGTCAGTAT | + |
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Preference number: 6 (lower is better) Translates to: DRKTAAWCSSWF*QPRVCSHCCQY Trigger: ATACTGACAACAGTGACTGCATACACGAGGCTGTCAGAACCAACTACTGCACCAAGCCGCAGTCTTTCTATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS GCA 72 bp | TGCAGTCACTGTTGTCAGTATTACACTTGCCACACTTaGAGCTTATGGCGACAGGGAAGGAGAAATAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: CSHCCQYYTCHT*SLWRQGRRNKE Trigger: CTCCTTATTTCTCCTTCCCTGTCGCCATAAGCTGCAAGTGTGGCAAGTGTAATACTGACAACAGTGACTGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS GCA 72 bp | GTACATTGTATACTCAGTGGGAATACAAAAGGATGCTaGTTGCCCACAAGCAAGAGCAAAAAGCACGGAGAG | + |
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Preference number: 6 (lower is better) Translates to: VHCILSGNTKGC*LPTSKSKKHGE Trigger: CTCTCCGTGCTTTTTGCTCTTGCTTGTGGGCAAGCAGCATCCTTTTGTATTCCCACTGAGTATACAATGTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS GCA 72 bp | CACGTACATTGTATACTCAGTGGGAATACAAAAGGATaGTGCTTGCCCACAAGCAAGAGCAAAAAGCACGGA | + |
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Preference number: 6 (lower is better) Translates to: HVHCILSGNTKG*CLPTSKSKKHG Trigger: TCCGTGCTTTTTGCTCTTGCTTGTGGGCAAGCAGCATCCTTTTGTATTCCCACTGAGTATACAATGTACGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS CCA 72 bp | CACACTCTCTCCTATCCACGTACATTGTATACTCAGTaGGAATACAAAAGGATGCTGCTTGCCCACAAGCAA | + |
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Preference number: 6 (lower is better) Translates to: HTLSYPRTLYTQ*EYKRMLLAHKQ Trigger: TTGCTTGTGGGCAAGCAGCATCCTTTTGTATTCCCACTGAGTATACAATGTACGTGGATAGGAGAGAGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS CCA 72 bp | GAAGGAGAAATAAGGAGTAACATGGTGCGGGCATCCTaGTATTTCCACCGTTCTGTAGATGAAGTCTCTGTA | + |
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Preference number: 6 (lower is better) Translates to: EGEIRSNMVRAS*YFHRSVDEVSV Trigger: TACAGAGACTTCATCTACAGAACGGTGGAAATACCAGGATGCCCGCACCATGTTACTCCTTATTTCTCCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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| CDS CAA 72 bp | TCAGGCAGTAGGCACACTCTCTCCTATCCACGTACATaGTATACTCAGTGGGAATACAAAAGGATGCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: SGSRHTLSYPRT*YTQWEYKRMLL Trigger: AAGCAGCATCCTTTTGTATTCCCACTGAGTATACAATGTACGTGGATAGGAGAGAGTGTGCCTACTGCCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000029450.10 ENSMUST00000170856.6 ENSMUST00000172026.8 ENSMUST00000197322.2 ENSMUST00000200041.5 |
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