Pregenerated sensors for TSGA8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035522Ensembl transcript IDs: ENSMUST00000049420.4
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GGGCTGGGGTTCTGGGGAATTCCCAGCACTGAGATAGCCATCTTATTGGCTATCAGCAGGTGCGGCTGCTaGCTCAGGTGCGGCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: GLGFWGIPSTEIAILLAISRCGC*LRCGCC Trigger: GCAGCAGCCGCACCTGAGGCAGCAGCCGCACCTGCT...GATAGCCAATAAGATGGCTATCTCAGTGCTGGGAATTCCCCAGAACCCCAGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS-3UTR GCA 90 bp | GGGCTGGGGTTCTGGGGAATTCCCAGCACTGAGATAGCCATCTTATTGGCTATCGGCTGCTACCTCAGGTaGGGCTGCTGCCTCAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: GLGFWGIPSTEIAILLAIGCYLR*GCCLRC Trigger: GCACCTGAGGCAGCAGCCGCACCTGAGGTAGCAGCC...GATAGCCAATAAGATGGCTATCTCAGTGCTGGGAATTCCCCAGAACCCCAGCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS-3UTR GCA 90 bp | GGGCTGGGGTTCTGGGGAATTCCCAGCACTGAGATAGCCATCTTATTGGCTATCAGCAGGTGTAGCAGGTaGGGCTGCTGCCTCAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: GLGFWGIPSTEIAILLAISRCSR*GCCLRC Trigger: GCACCTGAGGCAGCAGCCGCACCTGCTACACCTGCT...GATAGCCAATAAGATGGCTATCTCAGTGCTGGGAATTCCCCAGAACCCCAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS-3UTR GCA 90 bp | GGGCTGGGGTTCTGGGGAATTCCCAGCACTGAGATAGCCATCTTATTGGCTATCGGCTGCTGCCTCAGGTaGAGCAGGTGTAGCAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: GLGFWGIPSTEIAILLAIGCCLR*SRCSRC Trigger: GCACCTGCTACACCTGCTGCACCTGAGGCAGCAGCC...GATAGCCAATAAGATGGCTATCTCAGTGCTGGGAATTCCCCAGAACCCCAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS-3UTR GCA 90 bp | GGGCTGGGGTTCTGGGGAATTCCCAGCACTGAGATAGCCATCTTATTGGCTATCGGCAGGTGTAGCAGGTaGGGCTGCTACCTCAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: GLGFWGIPSTEIAILLAIGRCSR*GCYLRC Trigger: GCACCTGAGGTAGCAGCCGCACCTGCTACACCTGCC...GATAGCCAATAAGATGGCTATCTCAGTGCTGGGAATTCCCCAGAACCCCAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS-3UTR GCA 90 bp | GGGCTGGGGTTCTGGGGAATTCCCAGCACTGAGATAGCCATCTTATTGGCTATCGGCAGGTGCAGCTGTTaGCTCAGGTGCGGCAGGTGT | + |
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Preference number: 4 (lower is better) Translates to: GLGFWGIPSTEIAILLAIGRCSC*LRCGRC Trigger: ACACCTGCCGCACCTGAGGCAACAGCTGCACCTGCC...GATAGCCAATAAGATGGCTATCTCAGTGCTGGGAATTCCCCAGAACCCCAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS-3UTR CCA 90 bp | GGGCTGGGGTTCTGGGGAATTCCCAGCACTGAGATAGCCATCTTATTGGCTATCAGCTGGAGCAGCTGCTaGTGCCTCAGGTGCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: GLGFWGIPSTEIAILLAISWSSC*CLRCSR Trigger: CCTGCTGCACCTGAGGCACCAGCAGCTGCTCCAGCT...GATAGCCAATAAGATGGCTATCTCAGTGCTGGGAATTCCCCAGAACCCCAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS-3UTR GCA 90 bp | GGGCTGGGGTTCTGGGGAATTCCCAGCACTGAGATAGCCATCTTATTGGCTATCAGCTGTTGCCTCAGGTaGGGCAGGTGTAGCAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: GLGFWGIPSTEIAILLAISCCLR*GRCSRC Trigger: GCACCTGCTACACCTGCCGCACCTGAGGCAACAGCT...GATAGCCAATAAGATGGCTATCTCAGTGCTGGGAATTCCCCAGAACCCCAGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS-3UTR GCA 90 bp | GGGCTGGGGTTCTGGGGAATTCCCAGCACTGAGATAGCCATCTTATTGGCTATCAGTTGCTGCCTCAGGTaGGGCAGGTGCAGCTGTTGC | + |
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Preference number: 4 (lower is better) Translates to: GLGFWGIPSTEIAILLAISCCLR*GRCSCC Trigger: GCAACAGCTGCACCTGCCGCACCTGAGGCAGCAACT...GATAGCCAATAAGATGGCTATCTCAGTGCTGGGAATTCCCCAGAACCCCAGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS-3UTR GCA 90 bp | GGGCTGGGGTTCTGGGGAATTCCCAGCACTGAGATAGCCATCTTATTGGCTATCTGCAGCAGGTGTAGTTaGTGCCTCAGGTGCGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: GLGFWGIPSTEIAILLAICSRCS*CLRCGR Trigger: CCTGCCGCACCTGAGGCAGCAACTACACCTGCTGCA...GATAGCCAATAAGATGGCTATCTCAGTGCTGGGAATTCCCCAGAACCCCAGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS-3UTR GCA 90 bp | GGGCTGGGGTTCTGGGGAATTCCCAGCACTGAGATAGCCATCTTATTGGCTATCTGGAGCAGCTGCTGGTaGCTCAGGTGCAGCAGGTGT | + |
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Preference number: 4 (lower is better) Translates to: GLGFWGIPSTEIAILLAIWSSCW*LRCSRC Trigger: ACACCTGCTGCACCTGAGGCACCAGCAGCTGCTCCA...GATAGCCAATAAGATGGCTATCTCAGTGCTGGGAATTCCCCAGAACCCCAGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS-3UTR CCA 90 bp | GGGCTGGGGTTCTGGGGAATTCCCAGCACTGAGATAGCCATCTTATTGGCTATCTTCCTCCTCTACAGCTaGAGCAGCTGCTGGTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: GLGFWGIPSTEIAILLAIFLLYS*SSCWCL Trigger: GAGGCACCAGCAGCTGCTCCAGCTGTAGAGGAGGAA...GATAGCCAATAAGATGGCTATCTCAGTGCTGGGAATTCCCCAGAACCCCAGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS-3UTR CCA 90 bp | GGGCTGGGGTTCTGGGGAATTCCCAGCACTGAGATAGCCATCTTATTGGCTATCCGATGTCTTTCTTTGTaGAAGCCTTTTGGGCGCCAC | + |
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Preference number: 4 (lower is better) Translates to: GLGFWGIPSTEIAILLAIRCLSL*KPFGRH Trigger: GTGGCGCCCAAAAGGCTTCCACAAAGAAAGACATCG...GATAGCCAATAAGATGGCTATCTCAGTGCTGGGAATTCCCCAGAACCCCAGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS-3UTR GCA 90 bp | GGGCTGGGGTTCTGGGGAATTCCCAGCACTGAGATAGCCATCTTATTGGCTATCATAAAACTTGCAGGCTaGCTTGGTCCTAATTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: GLGFWGIPSTEIAILLAIIKLAG*LGPNWH Trigger: ATGCCAATTAGGACCAAGGCAGCCTGCAAGTTTTAT...GATAGCCAATAAGATGGCTATCTCAGTGCTGGGAATTCCCCAGAACCCCAGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS GCA 90 bp | TGCCTCAGGTGCAGCAGGTGTAGTTGCTGCCTCAGGTGCGGCAGGTaGAGCTGTTGCCTCAGGTGCGGCAGGTGTAGCAGGTGCGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: CLRCSRCSCCLRCGR*SCCLRCGRCSRCGC Trigger: GCAGCCGCACCTGCTACACCTGCCGCACCTGAGGCAACAGCTGCACCTGCCGCACCTGAGGCAGCAACTACACCTGCTGCACCTGAGGCA 66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS GCA 90 bp | TGCCGCCTCCCAGACCATTTCTTCCTCCTCTACAGCTGGAGCAGCTaGTGGTGCCTCAGGTGCAGCAGGTGTAGTTGCTGCCTCAGGTGC | + |
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Preference number: 5 (lower is better) Translates to: CRLPDHFFLLYSWSS*WCLRCSRCSCCLRC Trigger: GCACCTGAGGCAGCAACTACACCTGCTGCACCTGAGGCACCAGCAGCTGCTCCAGCTGTAGAGGAGGAAGAAATGGTCTGGGAGGCGGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS-3UTR CAA 90 bp | GGGCTGGGGTTCTGGGGAATTCCCAGCACTGAGATAGCCATCTTATTGGCTATCCTGCCGCCAGCATGGTaGGCTCCTTGGCCACTTTGG | + |
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Preference number: 5 (lower is better) Translates to: GLGFWGIPSTEIAILLAILPPAW*APWPLW Trigger: CCAAAGTGGCCAAGGAGCCAACCATGCTGGCGGCAG...GATAGCCAATAAGATGGCTATCTCAGTGCTGGGAATTCCCCAGAACCCCAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS CCA 90 bp | TCTTTGTGGAAGCCTTTTGGGCGCCACCGCGTTTCCCACGCTTGTTaGTCTTCGCACCCTTTCCACAAAGAATGTGAGGAGGATAAAACT | + |
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Preference number: 5 (lower is better) Translates to: SLWKPFGRHRVSHAC*SSHPFHKECEEDKT Trigger: AGTTTTATCCTCCTCACATTCTTTGTGGAAAGGGTGCGAAGACCAACAAGCGTGGGAAACGCGGTGGCGCCCAAAAGGCTTCCACAAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS CCA 90 bp | CAGCATGGTTGGCTCCTTGGCCACTTTGGACTTCTTAGCCACAGGTaGAGTAGTTTCTCCGATGTCTTTCTTTGTGGAAGCCTTTTGGGC | + |
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Preference number: 5 (lower is better) Translates to: QHGWLLGHFGLLSHR*SSFSDVFLCGSLLG Trigger: GCCCAAAAGGCTTCCACAAAGAAAGACATCGGAGAAACTACTCCACCTGTGGCTAAGAAGTCCAAAGTGGCCAAGGAGCCAACCATGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS GCA 90 bp | CGCACCCTTTCCACAAAGAATGTGAGGAGGATAAAACTTGCAGGCTaGCTTGGTCCTAATTGGCATTATAGGCTTCACCTCCTGAGAATC | + |
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Preference number: 5 (lower is better) Translates to: RTLSTKNVRRIKLAG*LGPNWHYRLHLLRI Trigger: GATTCTCAGGAGGTGAAGCCTATAATGCCAATTAGGACCAAGGCAGCCTGCAAGTTTTATCCTCCTCACATTCTTTGTGGAAAGGGTGCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS GCA 72 bp | TGTTGCCTCAGGTGCGGCAGGTGTAGCAGGTGCGGCTaGTACCTCAGGTGCGGCTGCTGCCTCAGGTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: CCLRCGRCSRCG*YLRCGCCLRCS Trigger: GCTGCACCTGAGGCAGCAGCCGCACCTGAGGTAGCAGCCGCACCTGCTACACCTGCCGCACCTGAGGCAACA 67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS CCA 72 bp | TGCTGCCTCAGGGGCGGCTGCTGCCGCCAGCATGGTTaGCTCCTTGGCCACTTTGGACTTCTTAGCCACAGG | + |
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Preference number: 6 (lower is better) Translates to: CCLRGGCCRQHG*LLGHFGLLSHR Trigger: CCTGTGGCTAAGAAGTCCAAAGTGGCCAAGGAGCCAACCATGCTGGCGGCAGCAGCCGCCCCTGAGGCAGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS CAA 90 bp | GCTGCTGCCTCAGGGGCGGCTGCTGCCGCCAGCATGGTTGGCTCCTaGGCCACTTTGGACTTCTTAGCCACAGGTGGAGTAGTTTCTCCG | + |
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Preference number: 6 (lower is better) Translates to: AAASGAAAAASMVGS*ATLDFLATGGVVSP Trigger: CGGAGAAACTACTCCACCTGTGGCTAAGAAGTCCAAAGTGGCCAAGGAGCCAACCATGCTGGCGGCAGCAGCCGCCCCTGAGGCAGCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS GCA 72 bp | CATTTCTTCCTCCTCTACAGCTGGAGCAGCTGCTGGTaGCTCAGGTGCAGCAGGTGTAGTTGCTGCCTCAGG | + |
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Preference number: 6 (lower is better) Translates to: HFFLLYSWSSCW*LRCSRCSCCLR Trigger: CCTGAGGCAGCAACTACACCTGCTGCACCTGAGGCACCAGCAGCTGCTCCAGCTGTAGAGGAGGAAGAAATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS GCA 72 bp | CCAGACCATTTCTTCCTCCTCTACAGCTGGAGCAGCTaGTGGTGCCTCAGGTGCAGCAGGTGTAGTTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: PDHFFLLYSWSS*WCLRCSRCSCC Trigger: GCAGCAACTACACCTGCTGCACCTGAGGCACCAGCAGCTGCTCCAGCTGTAGAGGAGGAAGAAATGGTCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS CCA 72 bp | GACCATTTCTTCCTCCTCTACAGCTGGAGCAGCTGCTaGTGCCTCAGGTGCAGCAGGTGTAGTTGCTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: DHFFLLYSWSSC*CLRCSRCSCCL Trigger: GAGGCAGCAACTACACCTGCTGCACCTGAGGCACCAGCAGCTGCTCCAGCTGTAGAGGAGGAAGAAATGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS CAA 72 bp | GCTGCTGCCGCCAGCATGGTTGGCTCCTTGGCCACTTaGGACTTCTTAGCCACAGGTGGAGTAGTTTCTCCG | + |
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Preference number: 6 (lower is better) Translates to: AAAASMVGSLAT*DFLATGGVVSP Trigger: CGGAGAAACTACTCCACCTGTGGCTAAGAAGTCCAAAGTGGCCAAGGAGCCAACCATGCTGGCGGCAGCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS CCA 72 bp | GTAGTTTCTCCGATGTCTTTCTTTGTGGAAGCCTTTTaGGCGCCACCGCGTTTCCCACGCTTGTTGGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: VVSPMSFFVEAF*APPRFPRLLVF Trigger: GAAGACCAACAAGCGTGGGAAACGCGGTGGCGCCCAAAAGGCTTCCACAAAGAAAGACATCGGAGAAACTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS CAA 72 bp | AGTAGTTTCTCCGATGTCTTTCTTTGTGGAAGCCTTTaGGGCGCCACCGCGTTTCCCACGCTTGTTGGTCTT | + |
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Preference number: 6 (lower is better) Translates to: SSFSDVFLCGSL*GATAFPTLVGL Trigger: AAGACCAACAAGCGTGGGAAACGCGGTGGCGCCCAAAAGGCTTCCACAAAGAAAGACATCGGAGAAACTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS CCA 72 bp | AGGAGGATAAAACTTGCAGGCTGCCTTGGTCCTAATTaGCATTATAGGCTTCACCTCCTGAGAATCGGTGGA | + |
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Preference number: 6 (lower is better) Translates to: RRIKLAGCLGPN*HYRLHLLRIGG Trigger: TCCACCGATTCTCAGGAGGTGAAGCCTATAATGCCAATTAGGACCAAGGCAGCCTGCAAGTTTTATCCTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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| CDS GCA 72 bp | TCCACAAAGAATGTGAGGAGGATAAAACTTGCAGGCTaGCTTGGTCCTAATTGGCATTATAGGCTTCACCTC | + |
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Preference number: 6 (lower is better) Translates to: STKNVRRIKLAG*LGPNWHYRLHL Trigger: GAGGTGAAGCCTATAATGCCAATTAGGACCAAGGCAGCCTGCAAGTTTTATCCTCCTCACATTCTTTGTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049420.4 |
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