RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TSGA13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039032

Ensembl transcript IDs: ENSMUST00000048580.2

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TGGTTAGTGACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTCTCTCTCTGGGAGGCTaGAGCAAAGATGAGGTTAGG +
Preference number: 4 (lower is better)
Translates to: WLVTSPGPLSSWRVRSGALSLGG*SKDEVR
Trigger: CCTAACCTCATCTTTGCTCCAGCCTCCCAGAGAGAG...AGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTCACTAACCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR CCA 90 bp GTGACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTAAGTTTCTTTGTCTCTCTCTaGGAGGCTGGAGCAAAGATG +
Preference number: 4 (lower is better)
Translates to: VTSPGPLSSWRVRSGALSFFVSL*EAGAKM
Trigger: CATCTTTGCTCCAGCCTCCCAGAGAGAGACAAAGAA...ACTTAAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR TCA 90 bp GTTAGTGACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTGCACTGTGTAGTGTCTaGGGTTCTTCAGGACAAATT +
Preference number: 4 (lower is better)
Translates to: VSDFSRPPQFLESEEWGFALCSV*GSSGQI
Trigger: AATTTGTCCTGAAGAACCTCAGACACTACACAGTGC...AAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTCACTAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR TCA 90 bp AGTGACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTAAGATTTCCCACAGGCTTTaGTCCACTGACTTCTTGAAA +
Preference number: 4 (lower is better)
Translates to: SDFSRPPQFLESEEWGFKISHRL*STDFLK
Trigger: TTTCAAGAAGTCAGTGGATCAAAGCCTGTGGGAAAT...CTTAAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR GCA 90 bp GTGACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTAAGTGGTTCCCAAAATACTTaGGAAGTTGGTGTTTCACTC +
Preference number: 4 (lower is better)
Translates to: VTSPGPLSSWRVRSGALSGSQNT*EVGVSL
Trigger: GAGTGAAACACCAACTTCGCAAGTATTTTGGGAACC...ACTTAAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR CCA 90 bp AGTGACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTAAGGTATTTGGCCATGTTTaGATGCACTGTGTAGTGTCT +
Preference number: 4 (lower is better)
Translates to: SDFSRPPQFLESEEWGFKVFGHV*MHCVVS
Trigger: AGACACTACACAGTGCATCCAAACATGGCCAAATAC...CTTAAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR CCA 90 bp AACTTTATTTGGTTAGTGACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGTTGACAATCCACTGCTaGGCCCTTCCATGGCGAAAG +
Preference number: 4 (lower is better)
Translates to: NFIWLVTSPGPLSSWRVRLTIHC*ALPWRK
Trigger: CTTTCGCCATGGAAGGGCCCAGCAGTGGATTGTCAA...CCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTCACTAACCAAATAAAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR TCA 90 bp TGGTTAGTGACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTATCTCTTCATCATCTTaGCCTAGTTGTTTCTCAAAC +
Preference number: 4 (lower is better)
Translates to: WLVTSPGPLSSWRVRSGAISSSS*PSCFSN
Trigger: GTTTGAGAAACAACTAGGTCAAGATGATGAAGAGAT...AGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTCACTAACCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR TCA 90 bp GTTAGTGACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTTGGTGTTTCACTCTCTaGCTTCATGGAAACATGTTT +
Preference number: 4 (lower is better)
Translates to: VSDFSRPPQFLESEEWGFWCFTL*LHGNMF
Trigger: AAACATGTTTCCATGAAGTCAGAGAGTGAAACACCA...AAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTCACTAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR CCA 90 bp TCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTAAGTCTTTGTAAGGCTCATAGTATTTaGCCATGTTTGGATGCACTG +
Preference number: 4 (lower is better)
Translates to: SPGPLSSWRVRSGALSLCKAHSI*PCLDAL
Trigger: CAGTGCATCCAAACATGGCCAAATACTATGAGCCTT...ACAAAGACTTAAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR TCA 90 bp GACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTAAGTCTAGTAACGTCATATCCTaGTCATATTCTGTCACCTTT +
Preference number: 4 (lower is better)
Translates to: DFSRPPQFLESEEWGFKSSNVIS*SYSVTF
Trigger: AAAGGTGACAGAATATGATCAGGATATGACGTTACT...AGACTTAAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR CCA 90 bp CTTTATTTGGTTAGTGACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTTTTCTGAGACATTGTaGGAAAGAAGTCATTCTTGT +
Preference number: 4 (lower is better)
Translates to: LYLVSDFSRPPQFLESEEFSETL*ERSHSC
Trigger: ACAAGAATGACTTCTTTCCCACAATGTCTCAGAAAA...CTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTCACTAACCAAATAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR CAA 90 bp GTTAGTGACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTGAGCAGGGCGGTGGGTaGTTAGTCATGAGCAGTAAC +
Preference number: 5 (lower is better)
Translates to: VSDFSRPPQFLESEEWGFEQGGG*LVMSSN
Trigger: GTTACTGCTCATGACTAACAACCCACCGCCCTGCTC...AAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTCACTAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR CAA 90 bp GACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTAAGTCTGGAAAGAAGTCATTCTaGTTGGGTTTGCACCGATGG +
Preference number: 5 (lower is better)
Translates to: DFSRPPQFLESEEWGFKSGKKSF*LGLHRW
Trigger: CCATCGGTGCAAACCCAACAAGAATGACTTCTTTCC...AGACTTAAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR CAA 90 bp GTGACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTAAGTTCTCTTCTAGGAGCTTaGAAAATGTCAGGGGTTCCC +
Preference number: 5 (lower is better)
Translates to: VTSPGPLSSWRVRSGALSSLLGA*KMSGVP
Trigger: GGGAACCCCTGACATTTTCAAAGCTCCTAGAAGAGA...ACTTAAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR CAA 90 bp GACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTAAGTCTAAACCTAAACCATTGTaGTCCCTTGAAGGTAGGATC +
Preference number: 5 (lower is better)
Translates to: DFSRPPQFLESEEWGFKSKPKPL*SLEGRI
Trigger: GATCCTACCTTCAAGGGACAACAATGGTTTAGGTTT...AGACTTAAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR CAA 90 bp TTGGTTAGTGACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTACTTCCCTTCGATGTaGAAATCATTGTCGGTAGAA +
Preference number: 5 (lower is better)
Translates to: LVSDFSRPPQFLESEEWGYFPSM*KSLSVE
Trigger: TTCTACCGACAATGATTTCAACATCGAAGGGAAGTA...GCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTCACTAACCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR CAA 90 bp ACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTAAGTCTTAGAAAACCTAAACCATaGTTGTCCCTTGAAGGTAGG +
Preference number: 5 (lower is better)
Translates to: TSPGPLSSWRVRSGALSLRKPKP*LSLEGR
Trigger: CCTACCTTCAAGGGACAACAATGGTTTAGGTTTTCT...AAGACTTAAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR CAA 90 bp GACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTAAGTCTTCTTTTTCTGAGACATaGTGGGAAAGAAGTCATTCT +
Preference number: 5 (lower is better)
Translates to: DFSRPPQFLESEEWGFKSSFSET*WERSHS
Trigger: AGAATGACTTCTTTCCCACAATGTCTCAGAAAAAGA...AGACTTAAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR CAA 90 bp AACTTTATTTGGTTAGTGACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGTGGAAACATGTTTCTTaGTCTCTCTCTGGGAGGCTG +
Preference number: 5 (lower is better)
Translates to: NFIWLVTSPGPLSSWRVRWKHVS*SLSGRL
Trigger: CAGCCTCCCAGAGAGAGACAAAGAAACATGTTTCCA...CCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGTCACTAACCAAATAAAGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR CAA 90 bp ACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTAAGTCTTAAAATACTTGCGAAGTaGGTGTTTCACTCTCTGACT +
Preference number: 5 (lower is better)
Translates to: TSPGPLSSWRVRSGALSLKILAK*VFHSLT
Trigger: AGTCAGAGAGTGAAACACCAACTTCGCAAGTATTTT...AAGACTTAAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS-3UTR CAA 90 bp ACTTCTCCAGGCCCCCTCAGTTCTTGGAGAGTGAGGAGTGGGGCTTTAAGTCTTTCGATGTTGAAATCATaGTCGGTAGAAAACCTAAAC +
Preference number: 5 (lower is better)
Translates to: TSPGPLSSWRVRSGALSLSMLKS*SVENLN
Trigger: GTTTAGGTTTTCTACCGACAATGATTTCAACATCGA...AAGACTTAAAGCCCCACTCCTCACTCTCCAAGAACTGAGGGGGCCTGGAGAAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS CCA 90 bp GTTCCCAAAATACTTGCGAAGTTGGTGTTTCACTCTCTGACTTCATaGAAACATGTTTCTTTGTCTCTCTCTGGGAGGCTGGAGCAAAGA +
Preference number: 5 (lower is better)
Translates to: VPKILAKLVFHSLTS*KHVSLSLSGRLEQR
Trigger: TCTTTGCTCCAGCCTCCCAGAGAGAGACAAAGAAACATGTTTCCATGAAGTCAGAGAGTGAAACACCAACTTCGCAAGTATTTTGGGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS CCA 90 bp AGACTGGCTTCAGCTCTGGTTTTAACTTCTTTTTCTGAGACATTGTaGGAAAGAAGTCATTCTTGTTGGGTTTGCACCGATGGAGAGTTT +
Preference number: 5 (lower is better)
Translates to: RLASALVLTSFSETL*ERSHSCWVCTDGEF
Trigger: AAACTCTCCATCGGTGCAAACCCAACAAGAATGACTTCTTTCCCACAATGTCTCAGAAAAAGAAGTTAAAACCAGAGCTGAAGCCAGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS TCA 90 bp AAGGCTCATAGTATTTGGCCATGTTTGGATGCACTGTGTAGTGTCTaGGGTTCTTCAGGACAAATTTCGATTGTGCAGTTGTATCATACA +
Preference number: 5 (lower is better)
Translates to: KAHSIWPCLDALCSV*GSSGQISIVQLYHT
Trigger: TGTATGATACAACTGCACAATCGAAATTTGTCCTGAAGAACCTCAGACACTACACAGTGCATCCAAACATGGCCAAATACTATGAGCCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS TCA 90 bp ACAAATTTCGATTGTGCAGTTGTATCATACATCTCTTCATCATCTTaGCCTAGTTGTTTCTCAAACCTAATAGAGACATTTCCCACAGGC +
Preference number: 5 (lower is better)
Translates to: TNFDCAVVSYISSSS*PSCFSNLIETFPTG
Trigger: GCCTGTGGGAAATGTCTCTATTAGGTTTGAGAAACAACTAGGTCAAGATGATGAAGAGATGTATGATACAACTGCACAATCGAAATTTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS GCA 72 bp GAGACATTGTGGGAAAGAAGTCATTCTTGTTGGGTTTaGACCGATGGAGAGTTTCCTTTAACTGAAACTCCG +
Preference number: 6 (lower is better)
Translates to: ETLWERSHSCWV*TDGEFPLTETP
Trigger: CGGAGTTTCAGTTAAAGGAAACTCTCCATCGGTGCAAACCCAACAAGAATGACTTCTTTCCCACAATGTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS TCA 72 bp AGTATTTGGCCATGTTTGGATGCACTGTGTAGTGTCTaGGGTTCTTCAGGACAAATTTCGATTGTGCAGTTG +
Preference number: 6 (lower is better)
Translates to: SIWPCLDALCSV*GSSGQISIVQL
Trigger: CAACTGCACAATCGAAATTTGTCCTGAAGAACCTCAGACACTACACAGTGCATCCAAACATGGCCAAATACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS CAA 72 bp TCATTGTCGGTAGAAAACCTAAACCATTGTTGTCCCTaGAAGGTAGGATCATCTAGCCGTTTCATAGGGAAG +
Preference number: 6 (lower is better)
Translates to: SLSVENLNHCCP*KVGSSSRFIGK
Trigger: CTTCCCTATGAAACGGCTAGATGATCCTACCTTCAAGGGACAACAATGGTTTAGGTTTTCTACCGACAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS TCA 72 bp AAGACTGGCTTCAGCTCTGGTTTTAACTTCTTTTTCTaGGACATTGTGGGAAAGAAGTCATTCTTGTTGGGT +
Preference number: 6 (lower is better)
Translates to: KTGFSSGFNFFF*DIVGKKSFLLG
Trigger: ACCCAACAAGAATGACTTCTTTCCCACAATGTCTCAGAAAAAGAAGTTAAAACCAGAGCTGAAGCCAGTCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS GCA 72 bp GTAGTGTCTGAGGTTCTTCAGGACAAATTTCGATTGTaGAGTTGTATCATACATCTCTTCATCATCTTGACC +
Preference number: 6 (lower is better)
Translates to: VVSEVLQDKFRL*SCIIHLFIILT
Trigger: GGTCAAGATGATGAAGAGATGTATGATACAACTGCACAATCGAAATTTGTCCTGAAGAACCTCAGACACTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS CAA 72 bp TGTGTAGTGTCTGAGGTTCTTCAGGACAAATTTCGATaGTGCAGTTGTATCATACATCTCTTCATCATCTTG +
Preference number: 6 (lower is better)
Translates to: CVVSEVLQDKFR*CSCIIHLFIIL
Trigger: CAAGATGATGAAGAGATGTATGATACAACTGCACAATCGAAATTTGTCCTGAAGAACCTCAGACACTACACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS TCA 72 bp TTTCTCAAACCTAATAGAGACATTTCCCACAGGCTTTaGTCCACTGACTTCTTGAAACTTGGAATTTTTCTT +
Preference number: 6 (lower is better)
Translates to: FLKPNRDISHRL*STDFLKLGIFL
Trigger: AAGAAAAATTCCAAGTTTCAAGAAGTCAGTGGATCAAAGCCTGTGGGAAATGTCTCTATTAGGTTTGAGAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2
CDS TCA 72 bp GATTGTGCAGTTGTATCATACATCTCTTCATCATCTTaGCCTAGTTGTTTCTCAAACCTAATAGAGACATTT +
Preference number: 6 (lower is better)
Translates to: DCAVVSYISSSS*PSCFSNLIETF
Trigger: AAATGTCTCTATTAGGTTTGAGAAACAACTAGGTCAAGATGATGAAGAGATGTATGATACAACTGCACAATC
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048580.2