RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TSGA10IP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039330

Ensembl transcript IDs: ENSMUST00000044527.5, ENSMUST00000235569.2

Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GCGCTGAGGTGCCAGGGTCCCTCTGTTCCCTCCGGATGTGTAGGCTaGCAGGCAGCGAGCCACCTGCTGCTGCACCTGCTGCTCCCGGGC +
Preference number: 5 (lower is better)
Translates to: ALRCQGPSVPSGCVG*QAASHLLLHLLLPG
Trigger: GCCCGGGAGCAGCAGGTGCAGCAGCAGGTGGCTCGCTGCCTGGCAGCCTACACATCCGGAGGGAACAGAGGGACCCTGGCACCTCAGCGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS GCA 90 bp ACCTGCTGCTGCACCTGCTGCTCCCGGGCTCTGCGCACCTCGGCCTaGTGCCTCTCCTTCACCTGCTGCTGTTCCCAGGCCCGGAGCAGG +
Preference number: 5 (lower is better)
Translates to: TCCCTCCSRALRTSA*CLSFTCCCSQARSR
Trigger: CCTGCTCCGGGCCTGGGAACAGCAGCAGGTGAAGGAGAGGCAGCAGGCCGAGGTGCGCAGAGCCCGGGAGCAGCAGGTGCAGCAGCAGGT
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS GCA 90 bp CCAGGCAGCGAGCCACCTGCTGCTGCACCTGCTGCTCCCGGGCTCTaGGCACCTCGGCCTGCTGCCTCTCCTTCACCTGCTGCTGTTCCC +
Preference number: 5 (lower is better)
Translates to: PGSEPPAAAPAAPGL*APRPAASPSPAAVP
Trigger: GGGAACAGCAGCAGGTGAAGGAGAGGCAGCAGGCCGAGGTGCGCAGAGCCCGGGAGCAGCAGGTGCAGCAGCAGGTGGCTCGCTGCCTGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS GCA 90 bp TGCTGCTGCACCTGCTGCTCCCGGGCTCTGCGCACCTCGGCCTGCTaGCTCTCCTTCACCTGCTGCTGTTCCCAGGCCCGGAGCAGGTTC +
Preference number: 5 (lower is better)
Translates to: CCCTCCSRALRTSAC*LSFTCCCSQARSRF
Trigger: GAACCTGCTCCGGGCCTGGGAACAGCAGCAGGTGAAGGAGAGGCAGCAGGCCGAGGTGCGCAGAGCCCGGGAGCAGCAGGTGCAGCAGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS GCA 90 bp TCCCGGGCTCTGCGCACCTCGGCCTGCTGCCTCTCCTTCACCTGCTaGTGTTCCCAGGCCCGGAGCAGGTTCCTGGTGGCTTCCTGTCGT +
Preference number: 5 (lower is better)
Translates to: SRALRTSACCLSFTC*CSQARSRFLVASCR
Trigger: ACGACAGGAAGCCACCAGGAACCTGCTCCGGGCCTGGGAACAGCAGCAGGTGAAGGAGAGGCAGCAGGCCGAGGTGCGCAGAGCCCGGGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS TCA 90 bp ATTGCCTGCCTCGGCCAGCAGCTGGTCCTCGTCTACCCCCAGTGCTaGCAGCACCTGGGAGAAGCGCCGATTTGCAGTGAGTCTGGCGTT +
Preference number: 5 (lower is better)
Translates to: IACLGQQLVLVYPQC*QHLGEAPICSESGV
Trigger: AACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS CCA 90 bp TCGGCCAGCAGCTGGTCCTCGTCTACCCCCAGTGCTGACAGCACCTaGGAGAAGCGCCGATTTGCAGTGAGTCTGGCGTTGGTCTGCATG +
Preference number: 5 (lower is better)
Translates to: SASSWSSSTPSADST*EKRRFAVSLALVCM
Trigger: CATGCAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS GCA 90 bp CTGGCGTTGGTCTGCATGGCCTGCTGGAACAGGAAGGGCCGGGCCTaGACCCTATGCTGGATACCTTGGAGCTCTGCTTGGTACTCAGCA +
Preference number: 5 (lower is better)
Translates to: LALVCMACWNRKGRA*TLCWIPWSSAWYSA
Trigger: TGCTGAGTACCAAGCAGAGCTCCAAGGTATCCAGCATAGGGTGCAGGCCCGGCCCTTCCTGTTCCAGCAGGCCATGCAGACCAACGCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS GCA 90 bp GAGAAGCGCCGATTTGCAGTGAGTCTGGCGTTGGTCTGCATGGCCTaGTGGAACAGGAAGGGCCGGGCCTGCACCCTATGCTGGATACCT +
Preference number: 5 (lower is better)
Translates to: EKRRFAVSLALVCMA*WNRKGRACTLCWIP
Trigger: AGGTATCCAGCATAGGGTGCAGGCCCGGCCCTTCCTGTTCCAGCAGGCCATGCAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS CCA 90 bp TGCTGGAACAGGAAGGGCCGGGCCTGCACCCTATGCTGGATACCTTaGAGCTCTGCTTGGTACTCAGCAAAACGCTGTCGCTCCTTGCGC +
Preference number: 5 (lower is better)
Translates to: CWNRKGRACTLCWIP*SSAWYSAKRCRSLR
Trigger: GCGCAAGGAGCGACAGCGTTTTGCTGAGTACCAAGCAGAGCTCCAAGGTATCCAGCATAGGGTGCAGGCCCGGCCCTTCCTGTTCCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS CCA 90 bp TGCATGGCCTGCTGGAACAGGAAGGGCCGGGCCTGCACCCTATGCTaGATACCTTGGAGCTCTGCTTGGTACTCAGCAAAACGCTGTCGC +
Preference number: 5 (lower is better)
Translates to: CMACWNRKGRACTLC*IPWSSAWYSAKRCR
Trigger: GCGACAGCGTTTTGCTGAGTACCAAGCAGAGCTCCAAGGTATCCAGCATAGGGTGCAGGCCCGGCCCTTCCTGTTCCAGCAGGCCATGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS GCA 90 bp ACTCAGCAAAACGCTGTCGCTCCTTGCGCCTTAGCTCCTCTAGTTTaGGCTGAGGTGCCAGGGTCCCTCTGTTCCCTCCGGATGTGTAGG +
Preference number: 5 (lower is better)
Translates to: TQQNAVAPCALAPLV*AEVPGSLCSLRMCR
Trigger: CCTACACATCCGGAGGGAACAGAGGGACCCTGGCACCTCAGCGCAAACTAGAGGAGCTAAGGCGCAAGGAGCGACAGCGTTTTGCTGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS GCA 90 bp GTCTGCATGGCCTGCTGGAACAGGAAGGGCCGGGCCTGCACCCTATaGTGGATACCTTGGAGCTCTGCTTGGTACTCAGCAAAACGCTGT +
Preference number: 5 (lower is better)
Translates to: VCMACWNRKGRACTL*WIPWSSAWYSAKRC
Trigger: ACAGCGTTTTGCTGAGTACCAAGCAGAGCTCCAAGGTATCCAGCATAGGGTGCAGGCCCGGCCCTTCCTGTTCCAGCAGGCCATGCAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS GCA 90 bp TTCCAGGTCTGCTTCTGGGGACCACATTCCAGTTCTTCCTGTAACTaGCTGTGTAGCCGCTCCAGGTCCCAGGGCCCCTTCAGGTCCTTG +
Preference number: 5 (lower is better)
Translates to: FQVCFWGPHSSSSCN*LCSRSRSQGPFRSL
Trigger: CAAGGACCTGAAGGGGCCCTGGGACCTGGAGCGGCTACACAGGCAGTTACAGGAAGAACTGGAATGTGGTCCCCAGAAGCAGACCTGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS TCA 90 bp CCCAGGCCCACTGGAAAGGGAAGGAAGGCTTTCGAGAAGGTGGACTaGAGAGATCCTCTGCCTCAGCTGAGCCACGGCCTTTCTTGTTCC +
Preference number: 5 (lower is better)
Translates to: PRPTGKGRKAFEKVD*RDPLPQLSHGLSCS
Trigger: GGAACAAGAAAGGCCGTGGCTCAGCTGAGGCAGAGGATCTCTTCAGTCCACCTTCTCGAAAGCCTTCCTTCCCTTTCCAGTGGGCCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS TCA 90 bp GCCCTTTCCCTTGTGGGGGTCGCTGTGTTCCTCCTCCATCGCCTCTaGTATCAATTCCTCCTCCAAGATCAAGCTCTGCCCTGGGAGCTG +
Preference number: 5 (lower is better)
Translates to: ALSLVGVAVFLLHRL*YQFLLQDQALPWEL
Trigger: CAGCTCCCAGGGCAGAGCTTGATCTTGGAGGAGGAATTGATATCAGAGGCGATGGAGGAGGAACACAGCGACCCCCACAAGGGAAAGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS GCA 90 bp TACCTTGGAGCTCTGCTTGGTACTCAGCAAAACGCTGTCGCTCCTTaGGCCTTAGCTCCTCTAGTTTGCGCTGAGGTGCCAGGGTCCCTC +
Preference number: 5 (lower is better)
Translates to: YLGALLGTQQNAVAP*ALAPLVCAEVPGSL
Trigger: GAGGGACCCTGGCACCTCAGCGCAAACTAGAGGAGCTAAGGCGCAAGGAGCGACAGCGTTTTGCTGAGTACCAAGCAGAGCTCCAAGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS CCA 90 bp CCCTTCTGTGGCTTTCGGAGACTGTTGAAGCTAGAGCTGCTTCCCTaGTTGTGGCTCTGCAGCTCCCCCTCTTCTGAGCCCTTCTCTCCA +
Preference number: 5 (lower is better)
Translates to: PFCGFRRLLKLELLP*LWLCSSPSSEPFSP
Trigger: TGGAGAGAAGGGCTCAGAAGAGGGGGAGCTGCAGAGCCACAACCAGGGAAGCAGCTCTAGCTTCAACAGTCTCCGAAAGCCACAGAAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS CCA 90 bp ACAAGAAACTTTCATCATCTCCCAAGATGGGGGTCTTCTTGTTCCTaGCAGAGGCCTGGACAGCTGCCCGCAGCGCCTTCCAGGTCTGCT +
Preference number: 5 (lower is better)
Translates to: TRNFHHLPRWGSSCS*QRPGQLPAAPSRSA
Trigger: AGCAGACCTGGAAGGCGCTGCGGGCAGCTGTCCAGGCCTCTGCCAGGAACAAGAAGACCCCCATCTTGGGAGATGATGAAAGTTTCTTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS CCA 90 bp TGTGGCTTTCGGAGACTGTTGAAGCTAGAGCTGCTTCCCTGGTTGTaGCTCTGCAGCTCCCCCTCTTCTGAGCCCTTCTCTCCAGAATTC +
Preference number: 5 (lower is better)
Translates to: CGFRRLLKLELLPWL*LCSSPSSEPFSPEF
Trigger: GAATTCTGGAGAGAAGGGCTCAGAAGAGGGGGAGCTGCAGAGCCACAACCAGGGAAGCAGCTCTAGCTTCAACAGTCTCCGAAAGCCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS TCA 90 bp CCAAGATCAAGCTCTGCCCTGGGAGCTGAGGCAGTTCCCCAGAGCTaGGACTTTTCTCAGCCTCTTCAGAATTCTGGCCTTCTATCTCTA +
Preference number: 5 (lower is better)
Translates to: PRSSSALGAEAVPQS*DFSQPLQNSGLLSL
Trigger: TAGAGATAGAAGGCCAGAATTCTGAAGAGGCTGAGAAAAGTCTCAGCTCTGGGGAACTGCCTCAGCTCCCAGGGCAGAGCTTGATCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS CCA 90 bp TGTTCCCAGGCCCGGAGCAGGTTCCTGGTGGCTTCCTGTCGTTTATaGAAAGTACGATTAGGGAAGTTGGCAGACAAGAAACTTTCATCA +
Preference number: 5 (lower is better)
Translates to: CSQARSRFLVASCRL*KVRLGKLADKKLSS
Trigger: TGATGAAAGTTTCTTGTCTGCCAACTTCCCTAATCGTACTTTCCATAAACGACAGGAAGCCACCAGGAACCTGCTCCGGGCCTGGGAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS GCA 72 bp TGCCAGGGTCCCTCTGTTCCCTCCGGATGTGTAGGCTaGCAGGCAGCGAGCCACCTGCTGCTGCACCTGCTG +
Preference number: 6 (lower is better)
Translates to: CQGPSVPSGCVG*QAASHLLLHLL
Trigger: CAGCAGGTGCAGCAGCAGGTGGCTCGCTGCCTGGCAGCCTACACATCCGGAGGGAACAGAGGGACCCTGGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS GCA 72 bp GAGAAGCGCCGATTTGCAGTGAGTCTGGCGTTGGTCTaGATGGCCTGCTGGAACAGGAAGGGCCGGGCCTGC +
Preference number: 6 (lower is better)
Translates to: EKRRFAVSLALV*MACWNRKGRAC
Trigger: GCAGGCCCGGCCCTTCCTGTTCCAGCAGGCCATGCAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS CCA 72 bp GAGAGGTTGGCTACTGACTTGTGCCTGGACTTGCACTaGGGGGCTGCTGGAGGGAGGAGCAGGGGTCGATGG +
Preference number: 6 (lower is better)
Translates to: ERLATDLCLDLH*GAAGGRSRGRW
Trigger: CCATCGACCCCTGCTCCTCCCTCCAGCAGCCCCCCAGTGCAAGTCCAGGCACAAGTCAGTAGCCAACCTCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS CCA 72 bp CCCAAGATGGGGGTCTTCTTGTTCCTGGCAGAGGCCTaGACAGCTGCCCGCAGCGCCTTCCAGGTCTGCTTC +
Preference number: 6 (lower is better)
Translates to: PKMGVFLFLAEA*TAARSAFQVCF
Trigger: GAAGCAGACCTGGAAGGCGCTGCGGGCAGCTGTCCAGGCCTCTGCCAGGAACAAGAAGACCCCCATCTTGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS GCA 72 bp AACGCTGTCGCTCCTTGCGCCTTAGCTCCTCTAGTTTaGGCTGAGGTGCCAGGGTCCCTCTGTTCCCTCCGG +
Preference number: 6 (lower is better)
Translates to: NAVAPCALAPLV*AEVPGSLCSLR
Trigger: CCGGAGGGAACAGAGGGACCCTGGCACCTCAGCGCAAACTAGAGGAGCTAAGGCGCAAGGAGCGACAGCGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS GCA 72 bp GTCTGCATGGCCTGCTGGAACAGGAAGGGCCGGGCCTaGACCCTATGCTGGATACCTTGGAGCTCTGCTTGG +
Preference number: 6 (lower is better)
Translates to: VCMACWNRKGRA*TLCWIPWSSAW
Trigger: CCAAGCAGAGCTCCAAGGTATCCAGCATAGGGTGCAGGCCCGGCCCTTCCTGTTCCAGCAGGCCATGCAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS GCA 72 bp CGATTTGCAGTGAGTCTGGCGTTGGTCTGCATGGCCTaGTGGAACAGGAAGGGCCGGGCCTGCACCCTATGC +
Preference number: 6 (lower is better)
Translates to: RFAVSLALVCMA*WNRKGRACTLC
Trigger: GCATAGGGTGCAGGCCCGGCCCTTCCTGTTCCAGCAGGCCATGCAGACCAACGCCAGACTCACTGCAAATCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS GCA 72 bp GCCTGCTGGAACAGGAAGGGCCGGGCCTGCACCCTATaGTGGATACCTTGGAGCTCTGCTTGGTACTCAGCA +
Preference number: 6 (lower is better)
Translates to: ACWNRKGRACTL*WIPWSSAWYSA
Trigger: TGCTGAGTACCAAGCAGAGCTCCAAGGTATCCAGCATAGGGTGCAGGCCCGGCCCTTCCTGTTCCAGCAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS CCA 72 bp AGCTGGTCCTCGTCTACCCCCAGTGCTGACAGCACCTaGGAGAAGCGCCGATTTGCAGTGAGTCTGGCGTTG +
Preference number: 6 (lower is better)
Translates to: SWSSSTPSADST*EKRRFAVSLAL
Trigger: CAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS TCA 72 bp GTGCTGACAGCACCTGGGAGAAGCGCCGATTTGCAGTaGGTCTGGCGTTGGTCTGCATGGCCTGCTGGAACA +
Preference number: 6 (lower is better)
Translates to: VLTAPGRSADLQ*VWRWSAWPAGT
Trigger: TGTTCCAGCAGGCCATGCAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS GCA 72 bp CCGGGCCTGCACCCTATGCTGGATACCTTGGAGCTCTaGTTGGTACTCAGCAAAACGCTGTCGCTCCTTGCG +
Preference number: 6 (lower is better)
Translates to: PGLHPMLDTLEL*LVLSKTLSLLA
Trigger: CGCAAGGAGCGACAGCGTTTTGCTGAGTACCAAGCAGAGCTCCAAGGTATCCAGCATAGGGTGCAGGCCCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS GCA 72 bp TGCTTCTGGGGACCACATTCCAGTTCTTCCTGTAACTaGCTGTGTAGCCGCTCCAGGTCCCAGGGCCCCTTC +
Preference number: 6 (lower is better)
Translates to: CFWGPHSSSSCN*LCSRSRSQGPF
Trigger: GAAGGGGCCCTGGGACCTGGAGCGGCTACACAGGCAGTTACAGGAAGAACTGGAATGTGGTCCCCAGAAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS CCA 72 bp AGGAAGGGCCGGGCCTGCACCCTATGCTGGATACCTTaGAGCTCTGCTTGGTACTCAGCAAAACGCTGTCGC +
Preference number: 6 (lower is better)
Translates to: RKGRACTLCWIP*SSAWYSAKRCR
Trigger: GCGACAGCGTTTTGCTGAGTACCAAGCAGAGCTCCAAGGTATCCAGCATAGGGTGCAGGCCCGGCCCTTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS CCA 72 bp GGCTTTCGGAGACTGTTGAAGCTAGAGCTGCTTCCCTaGTTGTGGCTCTGCAGCTCCCCCTCTTCTGAGCCC +
Preference number: 6 (lower is better)
Translates to: GFRRLLKLELLP*LWLCSSPSSEP
Trigger: GGGCTCAGAAGAGGGGGAGCTGCAGAGCCACAACCAGGGAAGCAGCTCTAGCTTCAACAGTCTCCGAAAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS CCA 72 bp TGGACAGCTGCCCGCAGCGCCTTCCAGGTCTGCTTCTaGGGACCACATTCCAGTTCTTCCTGTAACTGCCTG +
Preference number: 6 (lower is better)
Translates to: WTAARSAFQVCF*GPHSSSSCNCL
Trigger: CAGGCAGTTACAGGAAGAACTGGAATGTGGTCCCCAGAAGCAGACCTGGAAGGCGCTGCGGGCAGCTGTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS CCA 72 bp TTTCATCATCTCCCAAGATGGGGGTCTTCTTGTTCCTaGCAGAGGCCTGGACAGCTGCCCGCAGCGCCTTCC +
Preference number: 6 (lower is better)
Translates to: FHHLPRWGSSCS*QRPGQLPAAPS
Trigger: GGAAGGCGCTGCGGGCAGCTGTCCAGGCCTCTGCCAGGAACAAGAAGACCCCCATCTTGGGAGATGATGAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS CAA 90 bp AGGTCCTTGGCCCTTGAGATCCCCTTCTGTGGCTTTCGGAGACTGTaGAAGCTAGAGCTGCTTCCCTGGTTGTGGCTCTGCAGCTCCCCC +
Preference number: 6 (lower is better)
Translates to: RSLALEIPFCGFRRL*KLELLPWLWLCSSP
Trigger: GGGGGAGCTGCAGAGCCACAACCAGGGAAGCAGCTCTAGCTTCAACAGTCTCCGAAAGCCACAGAAGGGGATCTCAAGGGCCAAGGACCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS GCA 72 bp GCTCTGCTTGGTACTCAGCAAAACGCTGTCGCTCCTTaGGCCTTAGCTCCTCTAGTTTGCGCTGAGGTGCCA +
Preference number: 6 (lower is better)
Translates to: ALLGTQQNAVAP*ALAPLVCAEVP
Trigger: TGGCACCTCAGCGCAAACTAGAGGAGCTAAGGCGCAAGGAGCGACAGCGTTTTGCTGAGTACCAAGCAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS GCA 72 bp CTGTTGAAGCTAGAGCTGCTTCCCTGGTTGTGGCTCTaGAGCTCCCCCTCTTCTGAGCCCTTCTCTCCAGAA +
Preference number: 6 (lower is better)
Translates to: LLKLELLPWLWL*SSPSSEPFSPE
Trigger: TTCTGGAGAGAAGGGCTCAGAAGAGGGGGAGCTGCAGAGCCACAACCAGGGAAGCAGCTCTAGCTTCAACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS CCA 72 bp TGCTGGAACAGGAAGGGCCGGGCCTGCACCCTATGCTaGATACCTTGGAGCTCTGCTTGGTACTCAGCAAAA +
Preference number: 6 (lower is better)
Translates to: CWNRKGRACTLC*IPWSSAWYSAK
Trigger: TTTTGCTGAGTACCAAGCAGAGCTCCAAGGTATCCAGCATAGGGTGCAGGCCCGGCCCTTCCTGTTCCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044527.5
ENSMUST00000235569.2
CDS CCA 72 bp GCCTGGCCATCTATGATGAAGCTCTCCCAGGCCCACTaGAAAGGGAAGGAAGGCTTTCGAGAAGGTGGACTG +
Preference number: 6 (lower is better)
Translates to: AWPSMMKLSQAH*KGKEGFREGGL
Trigger: CAGTCCACCTTCTCGAAAGCCTTCCTTCCCTTTCCAGTGGGCCTGGGAGAGCTTCATCATAGATGGCCAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS CAA 72 bp GCCCTTGAGATCCCCTTCTGTGGCTTTCGGAGACTGTaGAAGCTAGAGCTGCTTCCCTGGTTGTGGCTCTGC +
Preference number: 6 (lower is better)
Translates to: ALEIPFCGFRRL*KLELLPWLWLC
Trigger: GCAGAGCCACAACCAGGGAAGCAGCTCTAGCTTCAACAGTCTCCGAAAGCCACAGAAGGGGATCTCAAGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS CAA 90 bp CACGGCCTTTCTTGTTCCGCCTCCGGGCCTTTCGCTCTTTCTTTGTaGTCTGCCCTGCGCTGTAAGATCTTTGTAGCTGGCAGCTCTGAC +
Preference number: 6 (lower is better)
Translates to: HGLSCSASGPFALSL*SALRCKIFVAGSSD
Trigger: GTCAGAGCTGCCAGCTACAAAGATCTTACAGCGCAGGGCAGACAACAAAGAAAGAGCGAAAGGCCCGGAGGCGGAACAAGAAAGGCCGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS TCA 72 bp AGCTCTGCCCTGGGAGCTGAGGCAGTTCCCCAGAGCTaGGACTTTTCTCAGCCTCTTCAGAATTCTGGCCTT +
Preference number: 6 (lower is better)
Translates to: SSALGAEAVPQS*DFSQPLQNSGL
Trigger: AAGGCCAGAATTCTGAAGAGGCTGAGAAAAGTCTCAGCTCTGGGGAACTGCCTCAGCTCCCAGGGCAGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS TCA 72 bp CTTGTGGGGGTCGCTGTGTTCCTCCTCCATCGCCTCTaGTATCAATTCCTCCTCCAAGATCAAGCTCTGCCC +
Preference number: 6 (lower is better)
Translates to: LVGVAVFLLHRL*YQFLLQDQALP
Trigger: GGGCAGAGCTTGATCTTGGAGGAGGAATTGATATCAGAGGCGATGGAGGAGGAACACAGCGACCCCCACAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS TCA 72 bp AGGGGTCGATGGCCCATGGCCATAGAGGAACTTGACTaGAACAGAGCCTGGCCATCTATGATGAAGCTCTCC +
Preference number: 6 (lower is better)
Translates to: RGRWPMAIEELD*NRAWPSMMKLS
Trigger: GGAGAGCTTCATCATAGATGGCCAGGCTCTGTTTCAGTCAAGTTCCTCTATGGCCATGGGCCATCGACCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS TCA 72 bp GAGCAGGGGTCGATGGCCCATGGCCATAGAGGAACTTaGCTGAAACAGAGCCTGGCCATCTATGATGAAGCT +
Preference number: 6 (lower is better)
Translates to: EQGSMAHGHRGT*LKQSLAIYDEA
Trigger: AGCTTCATCATAGATGGCCAGGCTCTGTTTCAGTCAAGTTCCTCTATGGCCATGGGCCATCGACCCCTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS CAA 72 bp AAGGCCCTAACCAACAGTTGGTCAGTGTTTAGCATATaGGCATGTTGCCCTCTCCCACCCCTACCTGCCAGC +
Preference number: 6 (lower is better)
Translates to: KALTNSWSVFSI*ACCPLPPLPAS
Trigger: GCTGGCAGGTAGGGGTGGGAGAGGGCAACATGCCAATATGCTAAACACTGACCAACTGTTGGTTAGGGCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS CAA 72 bp TCTTGTTCCGCCTCCGGGCCTTTCGCTCTTTCTTTGTaGTCTGCCCTGCGCTGTAAGATCTTTGTAGCTGGC +
Preference number: 6 (lower is better)
Translates to: SCSASGPFALSL*SALRCKIFVAG
Trigger: GCCAGCTACAAAGATCTTACAGCGCAGGGCAGACAACAAAGAAAGAGCGAAAGGCCCGGAGGCGGAACAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS CCA 72 bp AGTTGGCAGACAAGAAACTTTCATCATCTCCCAAGATaGGGGTCTTCTTGTTCCTGGCAGAGGCCTGGACAG +
Preference number: 6 (lower is better)
Translates to: SWQTRNFHHLPR*GSSCSWQRPGQ
Trigger: CTGTCCAGGCCTCTGCCAGGAACAAGAAGACCCCCATCTTGGGAGATGATGAAAGTTTCTTGTCTGCCAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2
CDS CCA 72 bp GCCCGGAGCAGGTTCCTGGTGGCTTCCTGTCGTTTATaGAAAGTACGATTAGGGAAGTTGGCAGACAAGAAA +
Preference number: 6 (lower is better)
Translates to: ARSRFLVASCRL*KVRLGKLADKK
Trigger: TTTCTTGTCTGCCAACTTCCCTAATCGTACTTTCCATAAACGACAGGAAGCCACCAGGAACCTGCTCCGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235569.2