Pregenerated sensors for TSFM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040521Ensembl transcript IDs: ENSMUST00000040560.11, ENSMUST00000120547.2, ENSMUST00000152054.8
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGAAAGGCCAACCCATACTCCCATAGTCCTGCCCTTAGCAGCACATaGGCTTGTAATTCTCTTTTTAGTTACTTGTTGAGAGTTTCGCAT | + |
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Preference number: 1 (lower is better) Translates to: RKANPYSHSPALSST*ACNSLFSYLLRVSH Trigger: ATGCGAAACTCTCAACAAGTAACTAAAAAGAGAATTACAAGCTCATGTGCTGCTAAGGGCAGGACTATGGGAGTATGGGTTGGCCTTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| 3UTR-3UTR TCA 90 bp | CTAACGCTCTGTGAGCCACACACATGCAGCGCCCTTGGAAGCCAGAATCCCTTGAGGAATTCAGGATTCTaGCTGTACCAGAACTCCAGT | + |
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Preference number: 2 (lower is better) Translates to: LTLCEPHTCSALGSQNPLRNSGF*LYQNSS Trigger: ACTGGAGTTCTGGTACAGTCAGAATCCTGAATTCCT...CAAGGGATTCTGGCTTCCAAGGGCGCTGCATGTGTGTGGCTCACAGAGCGTTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| 3UTR CAA 90 bp | CTTGTTGAGAGTTTCGCATATGCGTATGACATGTTTCCATCGCATTaGCTTCTTCTCCCTGCCTCCACTCTGGAGCTGACATCTCGGTTA | + |
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Preference number: 2 (lower is better) Translates to: LVESFAYAYDMFPSH*LLLPASTLELTSRL Trigger: TAACCGAGATGTCAGCTCCAGAGTGGAGGCAGGGAGAAGAAGCAAATGCGATGGAAACATGTCATACGCATATGCGAAACTCTCAACAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| 3UTR-3UTR GCA 90 bp | TATCTAAATTCCTTTAAGGAATTCAGGATTCTGACTGTACCAGAACTCCAGTTCTTTGCTTCTTCTCCCTaGCTCCACTCTGGAGCTGAC | + |
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Preference number: 2 (lower is better) Translates to: YLNSFKEFRILTVPELQFFASSP*LHSGAD Trigger: GTCAGCTCCAGAGTGGAGGCAGGGAGAAGAAGCAAA...GAACTGGAGTTCTGGTACAGTCAGAATCCTGAATTCCTTAAAGGAATTTAGATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| 3UTR-3UTR GCA 90 bp | TGTCACCCAGCCCTTAAGTTTTCTTCTCCACCTTTAGTGAGATTTTCCCTAAAATGTTTCCATCGCATTTaGTTCTTCTCCCTGCCTCCA | + |
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Preference number: 2 (lower is better) Translates to: CHPALKFSSPPLVRFSLKCFHRI*FFSLPP Trigger: TGGAGGCAGGGAGAAGAAGCAAATGCGATGGAAACA...TTTTAGGGAAAATCTCACTAAAGGTGGAGAAGAAAACTTAAGGGCTGGGTGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| 3UTR-3UTR TCA 90 bp | CTAAATTCCTTTAAGGAATTCAGGATTCTGACTGTACCAGAACTCCAGTTCCCTGCCCTTAGCAGCACATaGGCTTGTAATTCTCTTTTT | + |
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Preference number: 2 (lower is better) Translates to: LNSFKEFRILTVPELQFPALSST*ACNSLF Trigger: AAAAAGAGAATTACAAGCTCATGTGCTGCTAAGGGC...AGGGAACTGGAGTTCTGGTACAGTCAGAATCCTGAATTCCTTAAAGGAATTTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| 3UTR TCA 72 bp | TGTTTCGACTGCCCTAACCCTAACCCTAACGCTCTGTaGGCCACACACATGCAGCGCCCTTGGAAGCCAGAA | + |
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Preference number: 3 (lower is better) Translates to: CFDCPNPNPNAL*ATHMQRPWKPE Trigger: TTCTGGCTTCCAAGGGCGCTGCATGTGTGTGGCTCACAGAGCGTTAGGGTTAGGGTTAGGGCAGTCGAAACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| 3UTR-3UTR CAA 90 bp | AACCACTGCCCTCTGGAAGAACAGCCAAGGCTCTTAAATGAGCTGTCACCCAGCATGTTTCCATCGCATTaGCTTCTTCTCCCTGCCTCC | + |
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Preference number: 3 (lower is better) Translates to: NHCPLEEQPRLLNELSPSMFPSH*LLLPAS Trigger: GGAGGCAGGGAGAAGAAGCAAATGCGATGGAAACAT...GCTGGGTGACAGCTCATTTAAGAGCCTTGGCTGTTCTTCCAGAGGGCAGTGGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| 3UTR TCA 72 bp | CCACTGCCCTCTGGAAGAACAGCCAAGGCTCTTAAATaGGCTGTCACCCAGCCCTTAAGTTTTCTTCTCCAC | + |
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Preference number: 3 (lower is better) Translates to: PLPSGRTAKALK*AVTQPLSFLLH Trigger: GTGGAGAAGAAAACTTAAGGGCTGGGTGACAGCTCATTTAAGAGCCTTGGCTGTTCTTCCAGAGGGCAGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| 3UTR CCA 72 bp | AGTGAGATTTTCCCTAAAACACACACAATGGTCAGCTaGAGGATGAAGAGCCATCTCCTCTCTGCCTTTGTT | + |
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Preference number: 3 (lower is better) Translates to: SEIFPKTHTMVS*RMKSHLLSAFV Trigger: AACAAAGGCAGAGAGGAGATGGCTCTTCATCCTCCAGCTGACCATTGTGTGTGTTTTAGGGAAAATCTCACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| 3UTR-3UTR CAA 90 bp | AGCTGGAGGATGAAGAGCCATCTCCTCTCTGCCTTTGTTTATAGTTGGCACAGTAATATGGTACCTCTTTaGGTTCTTTGTGGTGTCTAC | + |
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Preference number: 3 (lower is better) Translates to: SWRMKSHLLSAFVYSWHSNMVPL*VLCGVY Trigger: GTAGACACCACAAAGAACCAAAAGAGGTACCATATT...ACTGTGCCAACTATAAACAAAGGCAGAGAGGAGATGGCTCTTCATCCTCCAGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| 3UTR-3UTR CAA 90 bp | AGCTGGAGGATGAAGAGCCATCTCCTCTCTGCCTTTGTTTATAGTTGGCACAGTCTTTTTAGTTACTTGTaGAGAGTTTCGCATATGCGT | + |
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Preference number: 3 (lower is better) Translates to: SWRMKSHLLSAFVYSWHSLFSYL*RVSHMR Trigger: ACGCATATGCGAAACTCTCAACAAGTAACTAAAAAG...ACTGTGCCAACTATAAACAAAGGCAGAGAGGAGATGGCTCTTCATCCTCCAGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| 3UTR TCA 72 bp | TTTTCCCTAAAACACACACAATGGTCAGCTGGAGGATaGAGAGCCATCTCCTCTCTGCCTTTGTTTATAGTT | + |
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Preference number: 3 (lower is better) Translates to: FSLKHTQWSAGG*RAISSLPLFIV Trigger: AACTATAAACAAAGGCAGAGAGGAGATGGCTCTTCATCCTCCAGCTGACCATTGTGTGTGTTTTAGGGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR TCA 90 bp | AACCACTGCCCTCTGGAAGAACAGCCAAGGCTCTTAAATGAGCTGTCACCCAGCGGGCCAACTGATCCTTaGGAGAGCCTTCCCTGTCGG | + |
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Preference number: 4 (lower is better) Translates to: NHCPLEEQPRLLNELSPSGPTDP*ESLPCR Trigger: CCGACAGGGAAGGCTCTCTCAAGGATCAGTTGGCCC...GCTGGGTGACAGCTCATTTAAGAGCCTTGGCTGTTCTTCCAGAGGGCAGTGGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR GCA 90 bp | CTTCTTCTCCCTGCCTCCACTCTGGAGCTGACATCTCGGTTACTGAATGAGACGGGAGCTTGGCGGCTTTaGTCCATCCTTCCTTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: LLLPASTLELTSRLLNETGAWRL*SILPSG Trigger: CCCAGAAGGAAGGATGGAGCAAAGCCGCCAAGCTCC...CGTCTCATTCAGTAACCGAGATGTCAGCTCCAGAGTGGAGGCAGGGAGAAGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR TCA 90 bp | AACCACTGCCCTCTGGAAGAACAGCCAAGGCTCTTAAATGAGCTGTCACCCAGCATCGCTAGGGCCAACTaGTCCTTGAGAGAGCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: NHCPLEEQPRLLNELSPSIARAN*SLREPS Trigger: GGAAGGCTCTCTCAAGGATCAGTTGGCCCTAGCGAT...GCTGGGTGACAGCTCATTTAAGAGCCTTGGCTGTTCTTCCAGAGGGCAGTGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR CCA 90 bp | AGCTGTCACCCAGCCCTTAAGTTTTCTTCTCCACCTTTAGTGAGATTTTCCCTACATGGCTGGGACGGCTaGAGCAGGACAGCCCTCGCC | + |
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Preference number: 4 (lower is better) Translates to: SCHPALKFSSPPLVRFSLHGWDG*SRTALA Trigger: GGCGAGGGCTGTCCTGCTCCAGCCGTCCCAGCCATG...TAGGGAAAATCTCACTAAAGGTGGAGAAGAAAACTTAAGGGCTGGGTGACAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR CCA 90 bp | AACCACTGCCCTCTGGAAGAACAGCCAAGGCTCTTAAATGAGCTGTCACCCAGCCTCCATCCTTCCTTCTaGGCCTGTTTGTGCAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: NHCPLEEQPRLLNELSPSLHPSF*ACLCSQ Trigger: CTGGCTGCACAAACAGGCCCAGAAGGAAGGATGGAG...GCTGGGTGACAGCTCATTTAAGAGCCTTGGCTGTTCTTCCAGAGGGCAGTGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR CCA 90 bp | AACCACTGCCCTCTGGAAGAACAGCCAAGGCTCTTAAATGAGCTGTCACCCAGCTCTGACAGTGTGCCATaGTTCCCAGGGCTACTTGCT | + |
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Preference number: 4 (lower is better) Translates to: NHCPLEEQPRLLNELSPSSDSVP*FPGLLA Trigger: AGCAAGTAGCCCTGGGAACCATGGCACACTGTCAGA...GCTGGGTGACAGCTCATTTAAGAGCCTTGGCTGTTCTTCCAGAGGGCAGTGGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| 3UTR CAA 72 bp | CCACACACATGCAGCGCCCTTGGAAGCCAGAATCCCTaGGAACTACTGTTAGAGATGTTCACTAGTCCAAGC | + |
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Preference number: 4 (lower is better) Translates to: PHTCSALGSQNP*ELLLEMFTSPS Trigger: GCTTGGACTAGTGAACATCTCTAACAGTAGTTCCAAGGGATTCTGGCTTCCAAGGGCGCTGCATGTGTGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR GCA 90 bp | ATGAGCTGTCACCCAGCCCTTAAGTTTTCTTCTCCACCTTTAGTGAGATTTTCCTTCTGGGCCTGTTTGTaGAGCCAGTCCTCTGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: MSCHPALKFSSPPLVRFSFWACL*SQSSAC Trigger: GCAGGCAGAGGACTGGCTGCACAAACAGGCCCAGAA...GGAAAATCTCACTAAAGGTGGAGAAGAAAACTTAAGGGCTGGGTGACAGCTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR GCA 90 bp | ATGAGCTGTCACCCAGCCCTTAAGTTTTCTTCTCCACCTTTAGTGAGATTTTCCCAGGTTCTGACAGTGTaGCATGGTTCCCAGGGCTAC | + |
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Preference number: 4 (lower is better) Translates to: MSCHPALKFSSPPLVRFSQVLTV*HGSQGY Trigger: GTAGCCCTGGGAACCATGGCACACTGTCAGAACCTG...GGAAAATCTCACTAAAGGTGGAGAAGAAAACTTAAGGGCTGGGTGACAGCTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR CCA 90 bp | AGCTGTCACCCAGCCCTTAAGTTTTCTTCTCCACCTTTAGTGAGATTTTCCCTATTAGTCTTCCTCCCGTaGAGCTTGGCGGCTTTGCTC | + |
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Preference number: 4 (lower is better) Translates to: SCHPALKFSSPPLVRFSLLVFLP*SLAALL Trigger: GAGCAAAGCCGCCAAGCTCCACGGGAGGAAGACTAA...TAGGGAAAATCTCACTAAAGGTGGAGAAGAAAACTTAAGGGCTGGGTGACAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR CCA 90 bp | TGTCACCCAGCCCTTAAGTTTTCTTCTCCACCTTTAGTGAGATTTTCCCTAAAATCCTCCCGTGGAGCTTaGCGGCTTTGCTCCATCCTT | + |
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Preference number: 4 (lower is better) Translates to: CHPALKFSSPPLVRFSLKSSRGA*RLCSIL Trigger: AAGGATGGAGCAAAGCCGCCAAGCTCCACGGGAGGA...TTTTAGGGAAAATCTCACTAAAGGTGGAGAAGAAAACTTAAGGGCTGGGTGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR TCA 90 bp | ATGAGCTGTCACCCAGCCCTTAAGTTTTCTTCTCCACCTTTAGTGAGATTTTCCGAGCCTTCTTGCAGTTaGCAAAGGAGTAGCCGGTTT | + |
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Preference number: 4 (lower is better) Translates to: MSCHPALKFSSPPLVRFSEPSCS*QRSSRF Trigger: AAACCGGCTACTCCTTTGTCAACTGCAAGAAGGCTC...GGAAAATCTCACTAAAGGTGGAGAAGAAAACTTAAGGGCTGGGTGACAGCTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR GCA 90 bp | TGTCACCCAGCCCTTAAGTTTTCTTCTCCACCTTTAGTGAGATTTTCCCTAAAACCTGTCGGGCCCAGCTaGAAGTTCAGAAAGCTCAGA | + |
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Preference number: 4 (lower is better) Translates to: CHPALKFSSPPLVRFSLKPVGPS*KFRKLR Trigger: TCTGAGCTTTCTGAACTTGCAGCTGGGCCCGACAGG...TTTTAGGGAAAATCTCACTAAAGGTGGAGAAGAAAACTTAAGGGCTGGGTGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR TCA 90 bp | CATTTGCTTCTTCTCCCTGCCTCCACTCTGGAGCTGACATCTCGGTTACTGAATTGCTGGACCAACTGTTaGAATTTTAAATTTCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: HLLLLPASTLELTSRLLNCWTNC*NFKFLE Trigger: CTCCAGAAATTTAAAATTTCAACAGTTGGTCCAGCA...ATTCAGTAACCGAGATGTCAGCTCCAGAGTGGAGGCAGGGAGAAGAAGCAAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR GCA 90 bp | TGTCACCCAGCCCTTAAGTTTTCTTCTCCACCTTTAGTGAGATTTTCCCTAAAAGCTGTGTTTCCCTCCTaGAGAAGTCCAATCAAGCCT | + |
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Preference number: 4 (lower is better) Translates to: CHPALKFSSPPLVRFSLKAVFPS*RSPIKP Trigger: AGGCTTGATTGGACTTCTGCAGGAGGGAAACACAGC...TTTTAGGGAAAATCTCACTAAAGGTGGAGAAGAAAACTTAAGGGCTGGGTGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS TCA 90 bp | CCTTGCTGGAGGCAGCAGAGGACAGCGAGGGGCCGGCGTGAAACGTaGGCCATGGCTGGGACGGCTGGAGCAGGACAGCCCTCGCCGAGC | + |
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Preference number: 5 (lower is better) Translates to: PCWRQQRTARGRRET*AMAGTAGAGQPSPS Trigger: GCTCGGCGAGGGCTGTCCTGCTCCAGCCGTCCCAGCCATGGCTCACGTTTCACGCCGGCCCCTCGCTGTCCTCTGCTGCCTCCAGCAAGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 ENSMUST00000152054.8 |
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| CDS TCA 90 bp | AGGAGCTCCTTGCTGGAGGCAGCAGAGGACAGCGAGGGGCCGGCGTaGAACGTGAGCCATGGCTGGGACGGCTGGAGCAGGACAGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: RSSLLEAAEDSEGPA*NVSHGWDGWSRTAL Trigger: GAGGGCTGTCCTGCTCCAGCCGTCCCAGCCATGGCTCACGTTTCACGCCGGCCCCTCGCTGTCCTCTGCTGCCTCCAGCAAGGAGCTCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 ENSMUST00000152054.8 |
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| CDS GCA 90 bp | TCGTCCAGGGAGCCCACAGAGAGAGGGGCCATGCCCACCACGTGCTaGCCCAAGCGGCGGCCAACCTCCTCCAGGTTTGCGATCTGCTCG | + |
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Preference number: 5 (lower is better) Translates to: SSREPTERGAMPTTC*PKRRPTSSRFAICS Trigger: CGAGCAGATCGCAAACCTGGAGGAGGTTGGCCGCCGCTTGGGGCAGCACGTGGTGGGCATGGCCCCTCTCTCTGTGGGCTCCCTGGACGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040560.11 |
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| CDS GCA 90 bp | TCATCGTCCAGGGAGCCCACAGAGAGAGGGGCCATGCCCACCACGTaGTGCCCCAAGCGGCGGCCAACCTCCTCCAGGTTTGCGATCTGC | + |
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Preference number: 5 (lower is better) Translates to: SSSREPTERGAMPTT*CPKRRPTSSRFAIC Trigger: GCAGATCGCAAACCTGGAGGAGGTTGGCCGCCGCTTGGGGCAGCACGTGGTGGGCATGGCCCCTCTCTCTGTGGGCTCCCTGGACGATGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040560.11 |
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| CDS GCA 90 bp | GCCCACCACGTGCTGCCCCAAGCGGCGGCCAACCTCCTCCAGGTTTaGGATCTGCTCGGGAGTCTCACAGATGACCAGGGCCCCGTACTT | + |
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Preference number: 5 (lower is better) Translates to: AHHVLPQAAANLLQV*DLLGSLTDDQGPVL Trigger: AAGTACGGGGCCCTGGTCATCTGTGAGACTCCCGAGCAGATCGCAAACCTGGAGGAGGTTGGCCGCCGCTTGGGGCAGCACGTGGTGGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040560.11 |
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| CDS GCA 90 bp | AAGCGCACGAAGTCCACTACAGTCACGCCCTGGGGCTGCACGTACTaGCCCAGTGTAATGGAAGGATCCAGGAGGTACGGCTGGGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: KRTKSTTVTPWGCTY*PSVMEGSRRYGWGS Trigger: GCTGCCCCAGCCGTACCTCCTGGATCCTTCCATTACACTGGGGCAGTACGTGCAGCCCCAGGGCGTGACTGTAGTGGACTTCGTGCGCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040560.11 |
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| CDS CCA 90 bp | GTCTTCCTCCCGTGGAGCTTGGCGGCTTTGCTCCATCCTTCCTTCTaGGCCTGTTTGTGCAGCCAGTCCTCTGCCTGCTTGAGGTCACCG | + |
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Preference number: 5 (lower is better) Translates to: VFLPWSLAALLHPSF*ACLCSQSSACLRSP Trigger: CGGTGACCTCAAGCAGGCAGAGGACTGGCTGCACAAACAGGCCCAGAAGGAAGGATGGAGCAAAGCCGCCAAGCTCCACGGGAGGAAGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 ENSMUST00000152054.8 |
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| CDS CCA 90 bp | TCTTCTCCACATTCGAAGCGCACGAAGTCCACTACAGTCACGCCCTaGGGCTGCACGTACTGCCCCAGTGTAATGGAAGGATCCAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: SSPHSKRTKSTTVTP*GCTYCPSVMEGSRR Trigger: CCTCCTGGATCCTTCCATTACACTGGGGCAGTACGTGCAGCCCCAGGGCGTGACTGTAGTGGACTTCGTGCGCTTCGAATGTGGAGAAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040560.11 |
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| CDS GCA 90 bp | CGGGAACGACAAATCCAACACCAAAGCAGTGGAGGTCTCGGCCTCTaGTTCCTCGCTCAACTCCAACGACGTCTTTCTGCTGCGGACTCA | + |
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Preference number: 5 (lower is better) Translates to: RERQIQHQSSGGLGL*FLAQLQRRLSAADS Trigger: TGAGTCCGCAGCAGAAAGACGTCGTTGGAGTTGAGCGAGGAAGCAGAGGCCGAGACCTCCACTGCTTTGGTGTTGGATTTGTCGTTCCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152054.8 |
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| CDS CCA 90 bp | GGCTCTTCCAGATCCACGGGAACGACAAATCCAACACCAAAGCAGTaGAGGTCTCGGCCTCTGCTTCCTCGCTCAACTCCAACGACGTCT | + |
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Preference number: 5 (lower is better) Translates to: GSSRSTGTTNPTPKQ*RSRPLLPRSTPTTS Trigger: AGACGTCGTTGGAGTTGAGCGAGGAAGCAGAGGCCGAGACCTCCACTGCTTTGGTGTTGGATTTGTCGTTCCCGTGGATCTGGAAGAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152054.8 |
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| CDS TCA 90 bp | CTTCCCTGTCGGGCCCAGCTGCAAGTTCAGAAAGCTCAGAGGAGTTaGGAAAGCCCTTACTGTACGTGGAGAGCCGATCCGTCAGGTTCT | + |
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Preference number: 5 (lower is better) Translates to: LPCRAQLQVQKAQRS*ESPYCTWRADPSGS Trigger: AGAACCTGACGGATCGGCTCTCCACGTACAGTAAGGGCTTTCTCAACTCCTCTGAGCTTTCTGAACTTGCAGCTGGGCCCGACAGGGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 |
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| CDS TCA 90 bp | CATCTGACGTTCATAGCAGCCAGCTCACGCAGCACTCTGAAGGTCTaGACTCTGCTTTTCAGGGCGGGACTTCCAGGAAGGGAAACGAGG | + |
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Preference number: 5 (lower is better) Translates to: HLTFIAASSRSTLKV*TLLFRAGLPGRETR Trigger: CCTCGTTTCCCTTCCTGGAAGTCCCGCCCTGAAAAGCAGAGTTCAGACCTTCAGAGTGCTGCGTGAGCTGGCTGCTATGAACGTCAGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152054.8 |
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| CDS GCA 90 bp | AGGTCTCGGCCTCTGCTTCCTCGCTCAACTCCAACGACGTCTTTCTaGTGCGGACTCAGGCAGAGCACTACCTCTACTAAAACAGCTGTG | + |
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Preference number: 5 (lower is better) Translates to: RSRPLLPRSTPTTSF*CGLRQSTTSTKTAV Trigger: CACAGCTGTTTTAGTAGAGGTAGTGCTCTGCCTGAGTCCGCAGCAGAAAGACGTCGTTGGAGTTGAGCGAGGAAGCAGAGGCCGAGACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152054.8 |
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| CDS CCA 90 bp | CCCTCCTGCAGAAGTCCAATCAAGCCTTCTTTAGTCTTCCTCCCGTaGAGCTTGGCGGCTTTGCTCCATCCTTCCTTCTGGGCCTGTTTG | + |
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Preference number: 5 (lower is better) Translates to: PSCRSPIKPSLVFLP*SLAALLHPSFWACL Trigger: CAAACAGGCCCAGAAGGAAGGATGGAGCAAAGCCGCCAAGCTCCACGGGAGGAAGACTAAAGAAGGCTTGATTGGACTTCTGCAGGAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 ENSMUST00000152054.8 |
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| CDS TCA 90 bp | TTGAGAAAGCCCTTACTGTACGTGGAGAGCCGATCCGTCAGGTTCTaGCAGTGTGCCATGGTTCCCAGGGCTACTTGCTGGACCAACTGT | + |
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Preference number: 5 (lower is better) Translates to: LRKPLLYVESRSVRF*QCAMVPRATCWTNC Trigger: ACAGTTGGTCCAGCAAGTAGCCCTGGGAACCATGGCACACTGTCAGAACCTGACGGATCGGCTCTCCACGTACAGTAAGGGCTTTCTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 |
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| CDS TCA 90 bp | TCATGTTCTCTCCCAGTTTACCAATCGCTAGGGCCAACTGATCCTTaGGAGAGCCTTCCCTGTCGGGCCCAGCTGCAAGTTCAGAAAGCT | + |
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Preference number: 5 (lower is better) Translates to: SCSLPVYQSLGPTDP*ESLPCRAQLQVQKA Trigger: AGCTTTCTGAACTTGCAGCTGGGCCCGACAGGGAAGGCTCTCTCAAGGATCAGTTGGCCCTAGCGATTGGTAAACTGGGAGAGAACATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040560.11 |
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| CDS GCA 90 bp | GCCCTTACTGTACGTGGAGAGCCGATCCGTCAGGTTCTGACAGTGTaGCATGGTTCCCAGGGCTACTTGCTGGACCAACTGTTGAAATTT | + |
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Preference number: 5 (lower is better) Translates to: ALTVRGEPIRQVLTV*HGSQGYLLDQLLKF Trigger: AAATTTCAACAGTTGGTCCAGCAAGTAGCCCTGGGAACCATGGCACACTGTCAGAACCTGACGGATCGGCTCTCCACGTACAGTAAGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 |
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| CDS GCA 90 bp | TCTCGGCCTCTGCTTCCTCGCTCAACTCCAACGACGTCTTTCTGCTaGGGACTCAGGCAGAGCACTACCTCTACTAAAACAGCTGTGTTT | + |
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Preference number: 5 (lower is better) Translates to: SRPLLPRSTPTTSFC*GLRQSTTSTKTAVF Trigger: AAACACAGCTGTTTTAGTAGAGGTAGTGCTCTGCCTGAGTCCGCAGCAGAAAGACGTCGTTGGAGTTGAGCGAGGAAGCAGAGGCCGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152054.8 |
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| CDS-3UTR CAA 90 bp | ACTCTGGAGCTGACATCTCGGTTACTGAATGAGACGTGGAGGAATGCCAAAGATTCCTTCTGGGCCTGTTaGTGCAGCCAGTCCTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: TLELTSRLLNETWRNAKDSFWAC*CSQSSA Trigger: GGCAGAGGACTGGCTGCACAAACAGGCCCAGAAGGA...ATCTTTGGCATTCCTCCACGTCTCATTCAGTAACCGAGATGTCAGCTCCAGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS TCA 90 bp | TTAAGAATCATGTTCTCTCCCAGTTTACCAATCGCTAGGGCCAACTaGTCCTTGAGAGAGCCTTCCCTGTCGGGCCCAGCTGCAAGTTCA | + |
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Preference number: 5 (lower is better) Translates to: LRIMFSPSLPIARAN*SLREPSLSGPAASS Trigger: TGAACTTGCAGCTGGGCCCGACAGGGAAGGCTCTCTCAAGGATCAGTTGGCCCTAGCGATTGGTAAACTGGGAGAGAACATGATTCTTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040560.11 |
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| CDS-3UTR CAA 90 bp | AGCTGTCACCCAGCCCTTAAGTTTTCTTCTCCACCTTTAGTGAGATTTTCCCTACAGTCCTCTGCCTGCTaGAGGTCACCGCCACAAGTC | + |
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Preference number: 5 (lower is better) Translates to: SCHPALKFSSPPLVRFSLQSSAC*RSPPQV Trigger: GACTTGTGGCGGTGACCTCAAGCAGGCAGAGGACTG...TAGGGAAAATCTCACTAAAGGTGGAGAAGAAAACTTAAGGGCTGGGTGACAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR CAA 90 bp | AGCTGTCACCCAGCCCTTAAGTTTTCTTCTCCACCTTTAGTGAGATTTTCCCTATTCCTCCCGTGGAGCTaGGCGGCTTTGCTCCATCCT | + |
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Preference number: 5 (lower is better) Translates to: SCHPALKFSSPPLVRFSLFLPWS*AALLHP Trigger: AGGATGGAGCAAAGCCGCCAAGCTCCACGGGAGGAA...TAGGGAAAATCTCACTAAAGGTGGAGAAGAAAACTTAAGGGCTGGGTGACAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR CAA 90 bp | AACCACTGCCCTCTGGAAGAACAGCCAAGGCTCTTAAATGAGCTGTCACCCAGCGAAAGCTCAGAGGAGTaGAGAAAGCCCTTACTGTAC | + |
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Preference number: 5 (lower is better) Translates to: NHCPLEEQPRLLNELSPSESSEE*RKPLLY Trigger: GTACAGTAAGGGCTTTCTCAACTCCTCTGAGCTTTC...GCTGGGTGACAGCTCATTTAAGAGCCTTGGCTGTTCTTCCAGAGGGCAGTGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS CCA 90 bp | TACTGTACGTGGAGAGCCGATCCGTCAGGTTCTGACAGTGTGCCATaGTTCCCAGGGCTACTTGCTGGACCAACTGTTGAAATTTTAAAT | + |
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Preference number: 5 (lower is better) Translates to: YCTWRADPSGSDSVP*FPGLLAGPTVEILN Trigger: ATTTAAAATTTCAACAGTTGGTCCAGCAAGTAGCCCTGGGAACCATGGCACACTGTCAGAACCTGACGGATCGGCTCTCCACGTACAGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 |
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| CDS-3UTR CAA 90 bp | CTAAATTCCTTTAAGGAATTCAGGATTCTGACTGTACCAGAACTCCAGTTCCCTTGGAGCTTGGCGGCTTaGCTCCATCCTTCCTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: LNSFKEFRILTVPELQFPWSLAA*LHPSFW Trigger: CCAGAAGGAAGGATGGAGCAAAGCCGCCAAGCTCCA...AGGGAACTGGAGTTCTGGTACAGTCAGAATCCTGAATTCCTTAAAGGAATTTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS-3UTR CAA 90 bp | TATCTAAATTCCTTTAAGGAATTCAGGATTCTGACTGTACCAGAACTCCAGTTCTTCATAAGGAGCTCCTaGCTGGAGGCAGCAGAGGAC | + |
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Preference number: 5 (lower is better) Translates to: YLNSFKEFRILTVPELQFFIRSS*LEAAED Trigger: GTCCTCTGCTGCCTCCAGCAAGGAGCTCCTTATGAA...GAACTGGAGTTCTGGTACAGTCAGAATCCTGAATTCCTTAAAGGAATTTAGATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS GCA 72 bp | ACGGCTGGAGCAGGACAGCCCTCGCCGAGCGGCCGGTaGACGCGACCGGGAAGAAGCGCAGCGACCGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: TAGAGQPSPSGR*TRPGRSAATAE Trigger: TTCTGCGGTCGCTGCGCTTCTTCCCGGTCGCGTGCACCGGCCGCTCGGCGAGGGCTGTCCTGCTCCAGCCGT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 ENSMUST00000152054.8 |
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| CDS GCA 72 bp | CCCAAGCGGCGGCCAACCTCCTCCAGGTTTGCGATCTaGTCGGGAGTCTCACAGATGACCAGGGCCCCGTAC | + |
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Preference number: 6 (lower is better) Translates to: PKRRPTSSRFAI*SGVSQMTRAPY Trigger: GTACGGGGCCCTGGTCATCTGTGAGACTCCCGAGCAGATCGCAAACCTGGAGGAGGTTGGCCGCCGCTTGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040560.11 |
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| CDS GCA 72 bp | GTGCTGCCCCAAGCGGCGGCCAACCTCCTCCAGGTTTaGGATCTGCTCGGGAGTCTCACAGATGACCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: VLPQAAANLLQV*DLLGSLTDDQG Trigger: GCCCTGGTCATCTGTGAGACTCCCGAGCAGATCGCAAACCTGGAGGAGGTTGGCCGCCGCTTGGGGCAGCAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040560.11 |
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| CDS CAA 90 bp | CCGTGGAGCTTGGCGGCTTTGCTCCATCCTTCCTTCTGGGCCTGTTaGTGCAGCCAGTCCTCTGCCTGCTTGAGGTCACCGCCACAAGTC | + |
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Preference number: 6 (lower is better) Translates to: PWSLAALLHPSFWAC*CSQSSACLRSPPQV Trigger: GACTTGTGGCGGTGACCTCAAGCAGGCAGAGGACTGGCTGCACAAACAGGCCCAGAAGGAAGGATGGAGCAAAGCCGCCAAGCTCCACGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 ENSMUST00000152054.8 |
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| CDS TCA 72 bp | TCTGGGCCTGTTTGTGCAGCCAGTCCTCTGCCTGCTTaGGGTCACCGCCACAAGTCTCCAGAGCCTTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: SGPVCAASPLPA*GHRHKSPEPSC Trigger: GCAAGAAGGCTCTGGAGACTTGTGGCGGTGACCTCAAGCAGGCAGAGGACTGGCTGCACAAACAGGCCCAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 ENSMUST00000152054.8 |
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| CDS TCA 72 bp | CCCTTACTGTACGTGGAGAGCCGATCCGTCAGGTTCTaGCAGTGTGCCATGGTTCCCAGGGCTACTTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: PLLYVESRSVRF*QCAMVPRATCW Trigger: CCAGCAAGTAGCCCTGGGAACCATGGCACACTGTCAGAACCTGACGGATCGGCTCTCCACGTACAGTAAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 |
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| CDS GCA 72 bp | GTACGTGGAGAGCCGATCCGTCAGGTTCTGACAGTGTaGCATGGTTCCCAGGGCTACTTGCTGGACCAACTG | + |
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Preference number: 6 (lower is better) Translates to: VRGEPIRQVLTV*HGSQGYLLDQL Trigger: CAGTTGGTCCAGCAAGTAGCCCTGGGAACCATGGCACACTGTCAGAACCTGACGGATCGGCTCTCCACGTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 |
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| CDS CAA 90 bp | CCTTCCCTGTCGGGCCCAGCTGCAAGTTCAGAAAGCTCAGAGGAGTaGAGAAAGCCCTTACTGTACGTGGAGAGCCGATCCGTCAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: PSLSGPAASSESSEE*RKPLLYVESRSVRF Trigger: GAACCTGACGGATCGGCTCTCCACGTACAGTAAGGGCTTTCTCAACTCCTCTGAGCTTTCTGAACTTGCAGCTGGGCCCGACAGGGAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 |
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| CDS TCA 72 bp | CGGGCCCAGCTGCAAGTTCAGAAAGCTCAGAGGAGTTaGGAAAGCCCTTACTGTACGTGGAGAGCCGATCCG | + |
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Preference number: 6 (lower is better) Translates to: RAQLQVQKAQRS*ESPYCTWRADP Trigger: CGGATCGGCTCTCCACGTACAGTAAGGGCTTTCTCAACTCCTCTGAGCTTTCTGAACTTGCAGCTGGGCCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 |
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| CDS TCA 72 bp | CTCCCAGTTTACCAATCGCTAGGGCCAACTGATCCTTaGGAGAGCCTTCCCTGTCGGGCCCAGCTGCAAGTT | + |
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Preference number: 6 (lower is better) Translates to: LPVYQSLGPTDP*ESLPCRAQLQV Trigger: AACTTGCAGCTGGGCCCGACAGGGAAGGCTCTCTCAAGGATCAGTTGGCCCTAGCGATTGGTAAACTGGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040560.11 |
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| CDS TCA 72 bp | GGTCACCGCCACAAGTCTCCAGAGCCTTCTTGCAGTTaGCAAAGGAGTAGCCGGTTTTCCGCCGCAGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: GHRHKSPEPSCS*QRSSRFSAAVS Trigger: TGAAACTGCGGCGGAAAACCGGCTACTCCTTTGTCAACTGCAAGAAGGCTCTGGAGACTTGTGGCGGTGACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 ENSMUST00000152054.8 |
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| CDS TCA 72 bp | ATGTTCTCTCCCAGTTTACCAATCGCTAGGGCCAACTaGTCCTTGAGAGAGCCTTCCCTGTCGGGCCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: MFSPSLPIARAN*SLREPSLSGPA Trigger: AGCTGGGCCCGACAGGGAAGGCTCTCTCAAGGATCAGTTGGCCCTAGCGATTGGTAAACTGGGAGAGAACAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040560.11 |
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| CDS TCA 72 bp | ACAGATACTCACCAATCGCTAGGGCCAACTGATCCTTaGGAGAGCCTTCCCTGTCGGGCCCAGCTGCAAGTT | + |
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Preference number: 6 (lower is better) Translates to: TDTHQSLGPTDP*ESLPCRAQLQV Trigger: AACTTGCAGCTGGGCCCGACAGGGAAGGCTCTCTCAAGGATCAGTTGGCCCTAGCGATTGGTGAGTATCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120547.2 |
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| CDS TCA 72 bp | TTCATAGCAGCCAGCTCACGCAGCACTCTGAAGGTCTaGACTCTGCTTTTCAGGGCGGGACTTCCAGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: FIAASSRSTLKV*TLLFRAGLPGR Trigger: CCTTCCTGGAAGTCCCGCCCTGAAAAGCAGAGTTCAGACCTTCAGAGTGCTGCGTGAGCTGGCTGCTATGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152054.8 |
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| CDS GCA 72 bp | CTGATCCTTGAGAGAGCCTTCCCTGTCGGGCCCAGCTaGAAGTTCAGAAAGCTCAGAGGAGTTGAGAAAGCC | + |
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Preference number: 6 (lower is better) Translates to: LILERAFPVGPS*KFRKLRGVEKA Trigger: GGCTTTCTCAACTCCTCTGAGCTTTCTGAACTTGCAGCTGGGCCCGACAGGGAAGGCTCTCTCAAGGATCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 |
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| CDS CCA 72 bp | TGGAGAGCCGATCCGTCAGGTTCTGACAGTGTGCCATaGTTCCCAGGGCTACTTGCTGGACCAACTGTTGAA | + |
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Preference number: 6 (lower is better) Translates to: WRADPSGSDSVP*FPGLLAGPTVE Trigger: TTCAACAGTTGGTCCAGCAAGTAGCCCTGGGAACCATGGCACACTGTCAGAACCTGACGGATCGGCTCTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 |
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| CDS CAA 72 bp | CCAATCAAGCCTTCTTTAGTCTTCCTCCCGTGGAGCTaGGCGGCTTTGCTCCATCCTTCCTTCTGGGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: PIKPSLVFLPWS*AALLHPSFWAC Trigger: ACAGGCCCAGAAGGAAGGATGGAGCAAAGCCGCCAAGCTCCACGGGAGGAAGACTAAAGAAGGCTTGATTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 ENSMUST00000152054.8 |
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| CDS CAA 72 bp | TCGGGCCCAGCTGCAAGTTCAGAAAGCTCAGAGGAGTaGAGAAAGCCCTTACTGTACGTGGAGAGCCGATCC | + |
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Preference number: 6 (lower is better) Translates to: SGPAASSESSEE*RKPLLYVESRS Trigger: GGATCGGCTCTCCACGTACAGTAAGGGCTTTCTCAACTCCTCTGAGCTTTCTGAACTTGCAGCTGGGCCCGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 |
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| CDS CAA 90 bp | TGCAGAAGTCCAATCAAGCCTTCTTTAGTCTTCCTCCCGTGGAGCTaGGCGGCTTTGCTCCATCCTTCCTTCTGGGCCTGTTTGTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: CRSPIKPSLVFLPWS*AALLHPSFWACLCS Trigger: GCTGCACAAACAGGCCCAGAAGGAAGGATGGAGCAAAGCCGCCAAGCTCCACGGGAGGAAGACTAAAGAAGGCTTGATTGGACTTCTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 ENSMUST00000152054.8 |
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| CDS GCA 72 bp | CCTCTGCTTCCTCGCTCAACTCCAACGACGTCTTTCTaGTGCGGACTCAGGCAGAGCACTACCTCTACTAAA | + |
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Preference number: 6 (lower is better) Translates to: PLLPRSTPTTSF*CGLRQSTTSTK Trigger: TTTAGTAGAGGTAGTGCTCTGCCTGAGTCCGCAGCAGAAAGACGTCGTTGGAGTTGAGCGAGGAAGCAGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152054.8 |
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| CDS GCA 72 bp | CAAATCCAACACCAAAGCAGTGGAGGTCTCGGCCTCTaGTTCCTCGCTCAACTCCAACGACGTCTTTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: QIQHQSSGGLGL*FLAQLQRRLSA Trigger: AGCAGAAAGACGTCGTTGGAGTTGAGCGAGGAAGCAGAGGCCGAGACCTCCACTGCTTTGGTGTTGGATTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152054.8 |
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| CDS GCA 72 bp | CTGCTTCCTCGCTCAACTCCAACGACGTCTTTCTGCTaGGGACTCAGGCAGAGCACTACCTCTACTAAAACA | + |
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Preference number: 6 (lower is better) Translates to: LLPRSTPTTSFC*GLRQSTTSTKT Trigger: TGTTTTAGTAGAGGTAGTGCTCTGCCTGAGTCCGCAGCAGAAAGACGTCGTTGGAGTTGAGCGAGGAAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152054.8 |
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| CDS CCA 72 bp | AGAAGTCCAATCAAGCCTTCTTTAGTCTTCCTCCCGTaGAGCTTGGCGGCTTTGCTCCATCCTTCCTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: RSPIKPSLVFLP*SLAALLHPSFW Trigger: CCAGAAGGAAGGATGGAGCAAAGCCGCCAAGCTCCACGGGAGGAAGACTAAAGAAGGCTTGATTGGACTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040560.11 ENSMUST00000120547.2 ENSMUST00000152054.8 |
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