Pregenerated sensors for TSEN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042389Ensembl transcript IDs: ENSMUST00000040234.9, ENSMUST00000130425.8
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGAATGCACCCGTCACTCAGTATTTCAAGGTTTCCAAACCGTCAATaGGTTTCCAGTCACGTGGGTAACTGGTTGAAGTCCTTGGGTAAG | + |
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Preference number: 1 (lower is better) Translates to: RMHPSLSISRFPNRQ*VSSHVGNWLKSLGK Trigger: CTTACCCAAGGACTTCAACCAGTTACCCACGTGACTGGAAACCCATTGACGGTTTGGAAACCTTGAAATACTGAGTGACGGGTGCATTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| 3UTR TCA 90 bp | TGTTTTGGGAGGGTGACTGAACAAGCAATGCATGCAGACGGGATTTaGGCCACATCAAGTCCAGTCTCAGTTTCCAAGCATTATCTACTC | + |
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Preference number: 1 (lower is better) Translates to: CFGRVTEQAMHADGI*ATSSPVSVSKHYLL Trigger: GAGTAGATAATGCTTGGAAACTGAGACTGGACTTGATGTGGCTCAAATCCCGTCTGCATGCATTGCTTGTTCAGTCACCCTCCCAAAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130425.8 |
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| 3UTR-3UTR CCA 90 bp | AGATGCATCTCTCACAGCCAGTACTACATAGTTTTGTGTTCAATGCACCAACCTTTCGGGGCAGGCCGATaGCACACAGTCAGAGCTGTT | + |
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Preference number: 2 (lower is better) Translates to: RCISHSQYYIVLCSMHQPFGAGR*HTVRAV Trigger: AACAGCTCTGACTGTGTGCCATCGGCCTGCCCCGAA...AGGTTGGTGCATTGAACACAAAACTATGTAGTACTGGCTGTGAGAGATGCATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| 3UTR CAA 90 bp | TTCCTCCGGCATATTATGATGCTGCCAAGATCCGTGCCATTCTGTTaGGACTTTCCAGCCATGAAAATCATGAACCAAATAAGCTCTTTT | + |
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Preference number: 2 (lower is better) Translates to: FLRHIMMLPRSVPFC*DFPAMKIMNQISSF Trigger: AAAAGAGCTTATTTGGTTCATGATTTTCATGGCTGGAAAGTCCAAACAGAATGGCACGGATCTTGGCAGCATCATAATATGCCGGAGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| 3UTR-3UTR TCA 90 bp | ACAAAAGAATTGACTAAGATGCCTAAATGCCCCTCAGGCAACATCTTCTCTGCTTGTGGGAGAGGGCAATaGTGTCATGTTTTGCTAAAT | + |
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Preference number: 2 (lower is better) Translates to: TKELTKMPKCPSGNIFSACGRGQ*CHVLLN Trigger: ATTTAGCAAAACATGACATCATTGCCCTCTCCCACA...AGCAGAGAAGATGTTGCCTGAGGGGCATTTAGGCATCTTAGTCAATTCTTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| 3UTR CCA 72 bp | GCCCCTCAGGCAACATCTTCTCTGCTCTCTAGCCTGTaGGAGAGGGCAATGATGTCATGTTTTGCTAAATGC | + |
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Preference number: 3 (lower is better) Translates to: APQATSSLLSSL*ERAMMSCFAKC Trigger: GCATTTAGCAAAACATGACATCATTGCCCTCTCCCACAGGCTAGAGAGCAGAGAAGATGTTGCCTGAGGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| 3UTR TCA 72 bp | AGGGTGACTGAACAAGCAATGCATGCAGACGGGATTTaGGCCACATCAAGTCCAGTCTCAGTTTCCAAGCAT | + |
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Preference number: 3 (lower is better) Translates to: RVTEQAMHADGI*ATSSPVSVSKH Trigger: ATGCTTGGAAACTGAGACTGGACTTGATGTGGCTCAAATCCCGTCTGCATGCATTGCTTGTTCAGTCACCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130425.8 |
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| 3UTR CCA 72 bp | CCGTCACTCAGTATTTCAAGGTTTCCAAACCGTCAATaGGTTTCCAGTCACGTGGGTAACTGGTTGAAGTCC | + |
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Preference number: 3 (lower is better) Translates to: PSLSISRFPNRQ*VSSHVGNWLKS Trigger: GGACTTCAACCAGTTACCCACGTGACTGGAAACCCATTGACGGTTTGGAAACCTTGAAATACTGAGTGACGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| 3UTR CCA 72 bp | CAGGACTTTATAACACATTCTAGATATGACAGCAGTTaGTGTTTTGGGAGGGTGACTGAACAAGCAATGCAT | + |
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Preference number: 3 (lower is better) Translates to: QDFITHSRYDSS*CFGRVTEQAMH Trigger: ATGCATTGCTTGTTCAGTCACCCTCCCAAAACACCAACTGCTGTCATATCTAGAATGTGTTATAAAGTCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130425.8 |
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| CDS-3UTR GCA 90 bp | GTTTCCAGTCACGTGGGTAACTGGTTGAAGTCCTTGGGTAAGCTGAGCTACAGACGTTCCCCGAGACTCTaGTCAGGGCGGCCAGCGACT | + |
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Preference number: 4 (lower is better) Translates to: VSSHVGNWLKSLGKLSYRRSPRL*SGRPAT Trigger: AGTCGCTGGCCGCCCTGAGCAGAGTCTCGGGGAACG...TCTGTAGCTCAGCTTACCCAAGGACTTCAACCAGTTACCCACGTGACTGGAAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR TCA 90 bp | CCTCAGGCAACATCTTCTCTGCTCTCTAGCCTGTGGGAGAGGGCAATGATGTCACCATGTAGGTTGTCCTaGAGGTGGGCTGGACTGCAG | + |
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Preference number: 4 (lower is better) Translates to: PQATSSLLSSLWERAMMSPCRLS*RWAGLQ Trigger: CTGCAGTCCAGCCCACCTTCAGGACAACCTACATGG...TGACATCATTGCCCTCTCCCACAGGCTAGAGAGCAGAGAAGATGTTGCCTGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR TCA 90 bp | GTTTCCAGTCACGTGGGTAACTGGTTGAAGTCCTTGGGTAAGCTGAGCTACAGACTGGGACCTTGGTCCTaGCCAAAGGGGATGGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: VSSHVGNWLKSLGKLSYRLGPWS*PKGMGS Trigger: ACTGCCCATCCCCTTTGGTCAGGACCAAGGTCCCAG...TCTGTAGCTCAGCTTACCCAAGGACTTCAACCAGTTACCCACGTGACTGGAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR TCA 90 bp | CCAGTCTCAGTTTCCAAGCATTATCTACTCCCAGGAGAAAACAAAGGCACAGGGCTGGGACCTTGGTCCTaGCCAAAGGGGATGGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: PVSVSKHYLLPGENKGTGLGPWS*PKGMGS Trigger: ACTGCCCATCCCCTTTGGTCAGGACCAAGGTCCCAG...CCCTGTGCCTTTGTTTTCTCCTGGGAGTAGATAATGCTTGGAAACTGAGACTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130425.8 |
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| CDS-3UTR CCA 90 bp | AGTATTTCAAGGTTTCCAAACCGTCAATGGGTTTCCAGTCACGTGGGTAACTGGGGCCTTGGAGCTCAGTaGCTCGTGCTGTGGGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: SISRFPNRQWVSSHVGNWGLGAQ*LVLWGL Trigger: GAGACCCCACAGCACGAGCCACTGAGCTCCAAGGCC...CCAGTTACCCACGTGACTGGAAACCCATTGACGGTTTGGAAACCTTGAAATACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR GCA 90 bp | GCATGCAGACGGGATTTGAGCCACATCAAGTCCAGTCTCAGTTTCCAAGCATTACCCTTCCCATACAGCTaGTCCATGTCCTCTGTGCCC | + |
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Preference number: 4 (lower is better) Translates to: ACRRDLSHIKSSLSFQALPFPYS*SMSSVP Trigger: GGGCACAGAGGACATGGAGCAGCTGTATGGGAAGGG...TAATGCTTGGAAACTGAGACTGGACTTGATGTGGCTCAAATCCCGTCTGCATGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130425.8 |
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| CDS-3UTR CCA 90 bp | GCCATCGCAGACCACCTAACACCAGATTCAAGAAGACGCAGCCACACCGAAGCCGGCGATTGTGAAGTTTaGACGGCTTCTGGAAAGAAT | + |
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Preference number: 4 (lower is better) Translates to: AIADHLTPDSRRRSHTEAGDCEV*TASGKN Trigger: ATTCTTTCCAGAAGCCGTCCAAACTTCACAATCGCC...GGCTTCGGTGTGGCTGCGTCTTCTTGAATCTGGTGTTAGGTGGTCTGCGATGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130425.8 |
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| CDS-3UTR GCA 90 bp | CTACTCCCAGGAGAAAACAAAGGCACAGGGTGTTGCCATCGCAGACCACCTAACATAGGCATGTCTGTCTaGACACCTTTCCATCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: LLPGENKGTGCCHRRPPNIGMSV*TPFHLA Trigger: TGCCAGATGGAAAGGTGTGCAGACAGACATGCCTAT...GTTAGGTGGTCTGCGATGGCAACACCCTGTGCCTTTGTTTTCTCCTGGGAGTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130425.8 |
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| CDS-3UTR GCA 90 bp | TCACTCAGTATTTCAAGGTTTCCAAACCGTCAATGGGTTTCCAGTCACGTGGGTGGATCTTCTGCACAGTaGTCTCATCGTGGCCCTGCC | + |
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Preference number: 4 (lower is better) Translates to: SLSISRFPNRQWVSSHVGGSSAQ*SHRGPA Trigger: GGCAGGGCCACGATGAGAGCACTGTGCAGAAGATCC...ACCCACGTGACTGGAAACCCATTGACGGTTTGGAAACCTTGAAATACTGAGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR GCA 90 bp | ACATCTTCTCTGCTCTCTAGCCTGTGGGAGAGGGCAATGATGTCATGTTTTGCTCATCCTTTTCCACTCTaGCTTCCAGGGAGGAGTCGG | + |
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Preference number: 4 (lower is better) Translates to: TSSLLSSLWERAMMSCFAHPFPL*LPGRSR Trigger: CCGACTCCTCCCTGGAAGGCAGAGTGGAAAAGGATG...AGCAAAACATGACATCATTGCCCTCTCCCACAGGCTAGAGAGCAGAGAAGATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR CCA 90 bp | AGTGAGTTCACTGAGAATGCACCCGTCACTCAGTATTTCAAGGTTTCCAAACCGACAGTGCTCTCATCGTaGCCCTGCCTACGCAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: SEFTENAPVTQYFKVSKPTVLSS*PCLRRK Trigger: CTTCCTGCGTAGGCAGGGCCACGATGAGAGCACTGT...CGGTTTGGAAACCTTGAAATACTGAGTGACGGGTGCATTCTCAGTGAACTCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR CCA 90 bp | ACATCTTCTCTGCTCTCTAGCCTGTGGGAGAGGGCAATGATGTCATGTTTTGCTACAGCATCAGCTCCTTaGAGACGTTCCCCGAGACTC | + |
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Preference number: 4 (lower is better) Translates to: TSSLLSSLWERAMMSCFATASAP*RRSPRL Trigger: GAGTCTCGGGGAACGTCTCCAAGGAGCTGATGCTGT...AGCAAAACATGACATCATTGCCCTCTCCCACAGGCTAGAGAGCAGAGAAGATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR GCA 90 bp | AGTTCACTGAGAATGCACCCGTCACTCAGTATTTCAAGGTTTCCAAACCGTCAACCCTTCCCATACAGCTaGTCCATGTCCTCTGTGCCC | + |
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Preference number: 4 (lower is better) Translates to: SSLRMHPSLSISRFPNRQPFPYS*SMSSVP Trigger: GGGCACAGAGGACATGGAGCAGCTGTATGGGAAGGG...TTGACGGTTTGGAAACCTTGAAATACTGAGTGACGGGTGCATTCTCAGTGAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR CCA 90 bp | AGTATTTCAAGGTTTCCAAACCGTCAATGGGTTTCCAGTCACGTGGGTAACTGGCAGTGGCTCGTGCTGTaGGGTCTCTTCTTTCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: SISRFPNRQWVSSHVGNWQWLVL*GLFFLL Trigger: GAGGAGAAAGAAGAGACCCCACAGCACGAGCCACTG...CCAGTTACCCACGTGACTGGAAACCCATTGACGGTTTGGAAACCTTGAAATACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR GCA 90 bp | ACATCTTCTCTGCTCTCTAGCCTGTGGGAGAGGGCAATGATGTCATGTTTTGCTATAGGCATGTCTGTCTaGACACCTTTCCATCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: TSSLLSSLWERAMMSCFAIGMSV*TPFHLA Trigger: TGCCAGATGGAAAGGTGTGCAGACAGACATGCCTAT...AGCAAAACATGACATCATTGCCCTCTCCCACAGGCTAGAGAGCAGAGAAGATGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR GCA 90 bp | TCTCTGCTCTCTAGCCTGTGGGAGAGGGCAATGATGTCATGTTTTGCTAAATGCTCTGTAAGGATCTTCTaGACAGTGCTCTCATCGTGG | + |
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Preference number: 4 (lower is better) Translates to: SLLSSLWERAMMSCFAKCSVRIF*TVLSSW Trigger: CCACGATGAGAGCACTGTGCAGAAGATCCTTACAGA...GCATTTAGCAAAACATGACATCATTGCCCTCTCCCACAGGCTAGAGAGCAGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR CCA 90 bp | CTGTTTGGACTTTCCAGCCATGAAAATCATGAACCAAATAAGCTCTTTTTCTTTCTGCGGCCTGGCTGCTaGCTTCAGGCCAAAGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: LFGLSSHENHEPNKLFFFLRPGC*LQAKGH Trigger: GTGGCCTTTGGCCTGAAGCCAGCAGCCAGGCCGCAG...AAAGAAAAAGAGCTTATTTGGTTCATGATTTTCATGGCTGGAAAGTCCAAACAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR GCA 90 bp | TTGAAGTCCTTGGGTAAGCTGAGCTACAGAGTAGATTTTTCCATTACAGCAACAAACCTCGGGGTCCTCTaGCACATGCCCATTATGGCT | + |
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Preference number: 4 (lower is better) Translates to: LKSLGKLSYRVDFSITATNLGVL*HMPIMA Trigger: AGCCATAATGGGCATGTGGCAGAGGACCCCGAGGTT...TGTTGCTGTAATGGAAAAATCTACTCTGTAGCTCAGCTTACCCAAGGACTTCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR CCA 90 bp | CCTCAGGCAACATCTTCTCTGCTCTCTAGCCTGTGGGAGAGGGCAATGATGTCACTAATCATTTCAGCCTaGAATATTCGGAATTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: PQATSSLLSSLWERAMMSLIISA*NIRNSF Trigger: GAAGGAATTCCGAATATTCCAGGCTGAAATGATTAG...TGACATCATTGCCCTCTCCCACAGGCTAGAGAGCAGAGAAGATGTTGCCTGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR GCA 90 bp | AGTGAGTTCACTGAGAATGCACCCGTCACTCAGTATTTCAAGGTTTCCAAACCGCTTGAATCCTCTTCATaGATTCTGGGGTCTCCATGT | + |
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Preference number: 4 (lower is better) Translates to: SEFTENAPVTQYFKVSKPLESSS*ILGSPC Trigger: ACATGGAGACCCCAGAATGCATGAAGAGGATTCAAG...CGGTTTGGAAACCTTGAAATACTGAGTGACGGGTGCATTCTCAGTGAACTCACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR CCA 90 bp | AGTGAGTTCACTGAGAATGCACCCGTCACTCAGTATTTCAAGGTTTCCAAACCGGGCGATTGTGAAGTTTaGACGGCTTCTGGAAAGAAT | + |
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Preference number: 4 (lower is better) Translates to: SEFTENAPVTQYFKVSKPGDCEV*TASGKN Trigger: ATTCTTTCCAGAAGCCGTCCAAACTTCACAATCGCC...CGGTTTGGAAACCTTGAAATACTGAGTGACGGGTGCATTCTCAGTGAACTCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR CCA 90 bp | CTGTTTGGACTTTCCAGCCATGAAAATCATGAACCAAATAAGCTCTTTTTCTTTGCACACCTTTCCATCTaGCAGCCAGCGTGGGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: LFGLSSHENHEPNKLFFFAHLSI*QPAWGW Trigger: CCAACCCCACGCTGGCTGCCAGATGGAAAGGTGTGC...AAAGAAAAAGAGCTTATTTGGTTCATGATTTTCATGGCTGGAAAGTCCAAACAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR CCA 90 bp | CTGTTTGGACTTTCCAGCCATGAAAATCATGAACCAAATAAGCTCTTTTTCTTTCCAAAGGCCACCCTGTaGAACGAGGGTTTCCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: LFGLSSHENHEPNKLFFFPKATL*NEGFLG Trigger: CCCCAGGAAACCCTCGTTCCACAGGGTGGCCTTTGG...AAAGAAAAAGAGCTTATTTGGTTCATGATTTTCATGGCTGGAAAGTCCAAACAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR TCA 90 bp | AGTATTTCAAGGTTTCCAAACCGTCAATGGGTTTCCAGTCACGTGGGTAACTGGATGCTGATACTTCTCTaGGGTGATTATAGGCATGTC | + |
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Preference number: 4 (lower is better) Translates to: SISRFPNRQWVSSHVGNWMLILL*GDYRHV Trigger: GACATGCCTATAATCACCTCAGAGAAGTATCAGCAT...CCAGTTACCCACGTGACTGGAAACCCATTGACGGTTTGGAAACCTTGAAATACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR GCA 90 bp | TTGAAGTCCTTGGGTAAGCTGAGCTACAGAGTAGATTTTTCCATTACAGCAACACTTCTTTCTCCTCTCTaGAAGGAAGCTCCAGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: LKSLGKLSYRVDFSITATLLSPL*KEAPVA Trigger: AGCCACTGGAGCTTCCTTGCAGAGAGGAGAAAGAAG...TGTTGCTGTAATGGAAAAATCTACTCTGTAGCTCAGCTTACCCAAGGACTTCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR GCA 90 bp | AGTTCACTGAGAATGCACCCGTCACTCAGTATTTCAAGGTTTCCAAACCGTCAAACTGCAGTGAAGGCTTaGCAGAGTTTCACTATTGTC | + |
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Preference number: 4 (lower is better) Translates to: SSLRMHPSLSISRFPNRQTAVKA*QSFTIV Trigger: GACAATAGTGAAACTCTGGCAAGCCTTCACTGCAGT...TTGACGGTTTGGAAACCTTGAAATACTGAGTGACGGGTGCATTCTCAGTGAACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR CCA 90 bp | TTGAAGTCCTTGGGTAAGCTGAGCTACAGAGTAGATTTTTCCATTACAGCAACAGCAAGGAAGCTCCAGTaGCTCTGTGTAGTCTGTAAG | + |
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Preference number: 4 (lower is better) Translates to: LKSLGKLSYRVDFSITATARKLQ*LCVVCK Trigger: CTTACAGACTACACAGAGCCACTGGAGCTTCCTTGC...TGTTGCTGTAATGGAAAAATCTACTCTGTAGCTCAGCTTACCCAAGGACTTCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR CCA 90 bp | GGATTTGAGCCACATCAAGTCCAGTCTCAGTTTCCAAGCATTATCTACTCCCAGCTAATCATTTCAGCCTaGAATATTCGGAATTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: GFEPHQVQSQFPSIIYSQLIISA*NIRNSF Trigger: GAAGGAATTCCGAATATTCCAGGCTGAAATGATTAG...CTGGGAGTAGATAATGCTTGGAAACTGAGACTGGACTTGATGTGGCTCAAATCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130425.8 |
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| 3UTR CAA 72 bp | CATATTATGATGCTGCCAAGATCCGTGCCATTCTGTTaGGACTTTCCAGCCATGAAAATCATGAACCAAATA | + |
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Preference number: 4 (lower is better) Translates to: HIMMLPRSVPFC*DFPAMKIMNQI Trigger: TATTTGGTTCATGATTTTCATGGCTGGAAAGTCCAAACAGAATGGCACGGATCTTGGCAGCATCATAATATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS GCA 90 bp | CGAGTGTGGCATGGCCAGGCCCCTCCTGCAGGCAGTCTGAGTGTGTaGCGAGACCGGGTAGGTCATCTGACTGTCCAGCACCTCCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: RVWHGQAPPAGSLSV*RDRVGHLTVQHLQG Trigger: CCCCTGGAGGTGCTGGACAGTCAGATGACCTACCCGGTCTCGGCACACACTCAGACTGCCTGCAGGAGGGGCCTGGCCATGCCACACTCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS TCA 90 bp | CCGCCGCCGCCTCCTCCTCCTGGGCACCACACAGCTCTTCCTCTATaGGCACATACTCGTGAGCAGCCCTTTTCTCTCCTGCGGCCTGGC | + |
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Preference number: 5 (lower is better) Translates to: PPPPPPPGHHTALPL*AHTREQPFSLLRPG Trigger: GCCAGGCCGCAGGAGAGAAAAGGGCTGCTCACGAGTATGTGCTCATAGAGGAAGAGCTGTGTGGTGCCCAGGAGGAGGAGGCGGCGGCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS GCA 90 bp | CTAGATGGACTAGCCGCAGCGAGTGTGGCATGGCCAGGCCCCTCCTaGAGGCAGTCTGAGTGTGTGCCGAGACCGGGTAGGTCATCTGAC | + |
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Preference number: 5 (lower is better) Translates to: LDGLAAASVAWPGPS*RQSECVPRPGRSSD Trigger: GTCAGATGACCTACCCGGTCTCGGCACACACTCAGACTGCCTGCAGGAGGGGCCTGGCCATGCCACACTCGCTGCGGCTAGTCCATCTAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS CCA 90 bp | GTTTCCTGGGGGAGAACCTCGGGGTCCTCTGCCACATGCCCATTATaGCTAGATGGACTAGCCGCAGCGAGTGTGGCATGGCCAGGCCCC | + |
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Preference number: 5 (lower is better) Translates to: VSWGRTSGSSATCPL*LDGLAAASVAWPGP Trigger: GGGGCCTGGCCATGCCACACTCGCTGCGGCTAGTCCATCTAGCCATAATGGGCATGTGGCAGAGGACCCCGAGGTTCTCCCCCAGGAAAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS CCA 90 bp | ACATGCCCATTATGGCTAGATGGACTAGCCGCAGCGAGTGTGGCATaGCCAGGCCCCTCCTGCAGGCAGTCTGAGTGTGTGCCGAGACCG | + |
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Preference number: 5 (lower is better) Translates to: TCPLWLDGLAAASVA*PGPSCRQSECVPRP Trigger: CGGTCTCGGCACACACTCAGACTGCCTGCAGGAGGGGCCTGGCCATGCCACACTCGCTGCGGCTAGTCCATCTAGCCATAATGGGCATGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS CCA 90 bp | GCACATACTCGTGAGCAGCCCTTTTCTCTCCTGCGGCCTGGCTGCTaGCTTCAGGCCAAAGGCCACCCTGTGGAACGAGGGTTTCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: AHTREQPFSLLRPGC*LQAKGHPVERGFPG Trigger: CCCAGGAAACCCTCGTTCCACAGGGTGGCCTTTGGCCTGAAGCCAGCAGCCAGGCCGCAGGAGAGAAAAGGGCTGCTCACGAGTATGTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS CCA 90 bp | GCCTTCCAGGGAGGAGTCGGCCTTGGAGCTCAGTGGCTCGTGCTGTaGGGTCTCTTCTTTCTCCTCTCTGCAAGGAAGCTCCAGTGGCTC | + |
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Preference number: 5 (lower is better) Translates to: AFQGGVGLGAQWLVL*GLFFLLSARKLQWL Trigger: GAGCCACTGGAGCTTCCTTGCAGAGAGGAGAAAGAAGAGACCCCACAGCACGAGCCACTGAGCTCCAAGGCCGACTCCTCCCTGGAAGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS CCA 90 bp | CTGCTGGCTTCAGGCCAAAGGCCACCCTGTGGAACGAGGGTTTCCTaGGGGAGAACCTCGGGGTCCTCTGCCACATGCCCATTATGGCTA | + |
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Preference number: 5 (lower is better) Translates to: LLASGQRPPCGTRVS*GRTSGSSATCPLWL Trigger: TAGCCATAATGGGCATGTGGCAGAGGACCCCGAGGTTCTCCCCCAGGAAACCCTCGTTCCACAGGGTGGCCTTTGGCCTGAAGCCAGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS GCA 90 bp | ACTCTGCCTTCCAGGGAGGAGTCGGCCTTGGAGCTCAGTGGCTCGTaGTGTGGGGTCTCTTCTTTCTCCTCTCTGCAAGGAAGCTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: TLPSREESALELSGS*CGVSSFSSLQGSSS Trigger: ACTGGAGCTTCCTTGCAGAGAGGAGAAAGAAGAGACCCCACAGCACGAGCCACTGAGCTCCAAGGCCGACTCCTCCCTGGAAGGCAGAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS GCA 90 bp | CTCTTCCTCTATGAGCACATACTCGTGAGCAGCCCTTTTCTCTCCTaGGGCCTGGCTGCTGGCTTCAGGCCAAAGGCCACCCTGTGGAAC | + |
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Preference number: 5 (lower is better) Translates to: LFLYEHILVSSPFLS*GLAAGFRPKATLWN Trigger: GTTCCACAGGGTGGCCTTTGGCCTGAAGCCAGCAGCCAGGCCGCAGGAGAGAAAAGGGCTGCTCACGAGTATGTGCTCATAGAGGAAGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS TCA 90 bp | ACGCAGGAAGTCCCTGGCCCATTCCACCCGATGCTGATACTTCTCTaGGGTGATTATAGGCATGTCTGTCTGCACACCTTTCCATCTGGC | + |
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Preference number: 5 (lower is better) Translates to: TQEVPGPFHPMLILL*GDYRHVCLHTFPSG Trigger: GCCAGATGGAAAGGTGTGCAGACAGACATGCCTATAATCACCTCAGAGAAGTATCAGCATCGGGTGGAATGGGCCAGGGACTTCCTGCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS CCA 90 bp | ACCTTTCCATCTGGCAGCCAGCGTGGGGTTGGCGATTGTGAAGTTTaGACGGCTTCTGGAAAGAATCCCCTTTCCAAAGTAACCCTTCCC | + |
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Preference number: 5 (lower is better) Translates to: TFPSGSQRGVGDCEV*TASGKNPLSKVTLP Trigger: GGGAAGGGTTACTTTGGAAAGGGGATTCTTTCCAGAAGCCGTCCAAACTTCACAATCGCCAACCCCACGCTGGCTGCCAGATGGAAAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040234.9 ENSMUST00000130425.8 |
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| CDS-3UTR CAA 90 bp | CACGTGGGTAACTGGTTGAAGTCCTTGGGTAAGCTGAGCTACAGAGTAGATTTTCACAGCATCAGCTCCTaGGAGACGTTCCCCGAGACT | + |
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Preference number: 5 (lower is better) Translates to: HVGNWLKSLGKLSYRVDFHSISS*ETFPET Trigger: AGTCTCGGGGAACGTCTCCAAGGAGCTGATGCTGTG...AAAATCTACTCTGTAGCTCAGCTTACCCAAGGACTTCAACCAGTTACCCACGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR CAA 90 bp | GCATGCAGACGGGATTTGAGCCACATCAAGTCCAGTCTCAGTTTCCAAGCATTACCCCTCACCACCACATaGTTGCTAATCATTTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: ACRRDLSHIKSSLSFQALPLTTT*LLIISA Trigger: GGCTGAAATGATTAGCAACAATGTGGTGGTGAGGGG...TAATGCTTGGAAACTGAGACTGGACTTGATGTGGCTCAAATCCCGTCTGCATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130425.8 |
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| CDS-3UTR CAA 90 bp | AGATGCATCTCTCACAGCCAGTACTACATAGTTTTGTGTTCAATGCACCAACCTGCAGCCAGCGTGGGGTaGGCGATTGTGAAGTTTGGA | + |
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Preference number: 5 (lower is better) Translates to: RCISHSQYYIVLCSMHQPAASVG*AIVKFG Trigger: TCCAAACTTCACAATCGCCAACCCCACGCTGGCTGC...AGGTTGGTGCATTGAACACAAAACTATGTAGTACTGGCTGTGAGAGATGCATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR CAA 90 bp | AGTATTTCAAGGTTTCCAAACCGTCAATGGGTTTCCAGTCACGTGGGTAACTGGCCCCTCACCACCACATaGTTGCTAATCATTTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: SISRFPNRQWVSSHVGNWPLTTT*LLIISA Trigger: GGCTGAAATGATTAGCAACAATGTGGTGGTGAGGGG...CCAGTTACCCACGTGACTGGAAACCCATTGACGGTTTGGAAACCTTGAAATACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR CAA 90 bp | GTCCAGTCTCAGTTTCCAAGCATTATCTACTCCCAGGAGAAAACAAAGGCACAGCTCACCACCACATTGTaGCTAATCATTTCAGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: VQSQFPSIIYSQEKTKAQLTTTL*LIISAW Trigger: CCAGGCTGAAATGATTAGCAACAATGTGGTGGTGAG...CTGTGCCTTTGTTTTCTCCTGGGAGTAGATAATGCTTGGAAACTGAGACTGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130425.8 |
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| CDS-3UTR CAA 90 bp | TCACTCAGTATTTCAAGGTTTCCAAACCGTCAATGGGTTTCCAGTCACGTGGGTGCCAGAGTTTCACTATaGTCAGAGGCTCCTTCTCAT | + |
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Preference number: 5 (lower is better) Translates to: SLSISRFPNRQWVSSHVGARVSL*SEAPSH Trigger: ATGAGAAGGAGCCTCTGACAATAGTGAAACTCTGGC...ACCCACGTGACTGGAAACCCATTGACGGTTTGGAAACCTTGAAATACTGAGTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS-3UTR CAA 90 bp | ACCTTCACTTCTCACTTTTATTTTATAAGAAGTTCTCCAAGCAAGATGCATCTCCTCACCACCACATTGTaGCTAATCATTTCAGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: TFTSHFYFIRSSPSKMHLLTTTL*LIISAW Trigger: CCAGGCTGAAATGATTAGCAACAATGTGGTGGTGAG...GAGATGCATCTTGCTTGGAGAACTTCTTATAAAATAAAAGTGAGAAGTGAAGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS GCA 72 bp | CTAGCCGCAGCGAGTGTGGCATGGCCAGGCCCCTCCTaGAGGCAGTCTGAGTGTGTGCCGAGACCGGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: LAAASVAWPGPS*RQSECVPRPGR Trigger: CCTACCCGGTCTCGGCACACACTCAGACTGCCTGCAGGAGGGGCCTGGCCATGCCACACTCGCTGCGGCTAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS CCA 72 bp | GGCCTGGCTGCTGGCTTCAGGCCAAAGGCCACCCTGTaGAACGAGGGTTTCCTGGGGGAGAACCTCGGGGTC | + |
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Preference number: 6 (lower is better) Translates to: GLAAGFRPKATL*NEGFLGENLGV Trigger: GACCCCGAGGTTCTCCCCCAGGAAACCCTCGTTCCACAGGGTGGCCTTTGGCCTGAAGCCAGCAGCCAGGCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS CCA 72 bp | CGTGAGCAGCCCTTTTCTCTCCTGCGGCCTGGCTGCTaGCTTCAGGCCAAAGGCCACCCTGTGGAACGAGGG | + |
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Preference number: 6 (lower is better) Translates to: REQPFSLLRPGC*LQAKGHPVERG Trigger: CCCTCGTTCCACAGGGTGGCCTTTGGCCTGAAGCCAGCAGCCAGGCCGCAGGAGAGAAAAGGGCTGCTCACG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS GCA 72 bp | CATGGCCAGGCCCCTCCTGCAGGCAGTCTGAGTGTGTaGCGAGACCGGGTAGGTCATCTGACTGTCCAGCAC | + |
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Preference number: 6 (lower is better) Translates to: HGQAPPAGSLSV*RDRVGHLTVQH Trigger: GTGCTGGACAGTCAGATGACCTACCCGGTCTCGGCACACACTCAGACTGCCTGCAGGAGGGGCCTGGCCATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS CCA 72 bp | CTCGGGGTCCTCTGCCACATGCCCATTATGGCTAGATaGACTAGCCGCAGCGAGTGTGGCATGGCCAGGCCC | + |
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Preference number: 6 (lower is better) Translates to: LGVLCHMPIMAR*TSRSECGMARP Trigger: GGGCCTGGCCATGCCACACTCGCTGCGGCTAGTCCATCTAGCCATAATGGGCATGTGGCAGAGGACCCCGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS CCA 72 bp | TCAGGCCAAAGGCCACCCTGTGGAACGAGGGTTTCCTaGGGGAGAACCTCGGGGTCCTCTGCCACATGCCCA | + |
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Preference number: 6 (lower is better) Translates to: SGQRPPCGTRVS*GRTSGSSATCP Trigger: TGGGCATGTGGCAGAGGACCCCGAGGTTCTCCCCCAGGAAACCCTCGTTCCACAGGGTGGCCTTTGGCCTGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS GCA 72 bp | ACTCGTGAGCAGCCCTTTTCTCTCCTGCGGCCTGGCTaGTGGCTTCAGGCCAAAGGCCACCCTGTGGAACGA | + |
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Preference number: 6 (lower is better) Translates to: TREQPFSLLRPG*WLQAKGHPVER Trigger: TCGTTCCACAGGGTGGCCTTTGGCCTGAAGCCAGCAGCCAGGCCGCAGGAGAGAAAAGGGCTGCTCACGAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS GCA 72 bp | TCCAGGGAGGAGTCGGCCTTGGAGCTCAGTGGCTCGTaGTGTGGGGTCTCTTCTTTCTCCTCTCTGCAAGGA | + |
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Preference number: 6 (lower is better) Translates to: SREESALELSGS*CGVSSFSSLQG Trigger: TCCTTGCAGAGAGGAGAAAGAAGAGACCCCACAGCACGAGCCACTGAGCTCCAAGGCCGACTCCTCCCTGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS GCA 72 bp | AACGAGGGTTTCCTGGGGGAGAACCTCGGGGTCCTCTaGCACATGCCCATTATGGCTAGATGGACTAGCCGC | + |
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Preference number: 6 (lower is better) Translates to: NEGFLGENLGVL*HMPIMARWTSR Trigger: GCGGCTAGTCCATCTAGCCATAATGGGCATGTGGCAGAGGACCCCGAGGTTCTCCCCCAGGAAACCCTCGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS CCA 72 bp | TGCTCTCATCGTGGCCCTGCCTACGCAGGAAGTCCCTaGCCCATTCCACCCGATGCTGATACTTCTCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: CSHRGPAYAGSP*PIPPDADTSLR Trigger: CCTCAGAGAAGTATCAGCATCGGGTGGAATGGGCCAGGGACTTCCTGCGTAGGCAGGGCCACGATGAGAGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS CCA 72 bp | GGAGGAGTCGGCCTTGGAGCTCAGTGGCTCGTGCTGTaGGGTCTCTTCTTTCTCCTCTCTGCAAGGAAGCTC | + |
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Preference number: 6 (lower is better) Translates to: GGVGLGAQWLVL*GLFFLLSARKL Trigger: GAGCTTCCTTGCAGAGAGGAGAAAGAAGAGACCCCACAGCACGAGCCACTGAGCTCCAAGGCCGACTCCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS TCA 72 bp | GCACCACACAGCTCTTCCTCTATGAGCACATACTCGTaGGCAGCCCTTTTCTCTCCTGCGGCCTGGCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: APHSSSSMSTYS*AALFSPAAWLL Trigger: CAGCAGCCAGGCCGCAGGAGAGAAAAGGGCTGCTCACGAGTATGTGCTCATAGAGGAAGAGCTGTGTGGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS TCA 72 bp | CTTTCCATCTGGCAGCCAGCGTGGGGTTGGCGATTGTaGAGTTTGGACGGCTTCTGGAAAGAATCCCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: LSIWQPAWGWRL*SLDGFWKESPF Trigger: GAAAGGGGATTCTTTCCAGAAGCCGTCCAAACTTCACAATCGCCAACCCCACGCTGGCTGCCAGATGGAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040234.9 ENSMUST00000130425.8 |
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| CDS CAA 72 bp | GGTTGTCCTGAAGGTGGGCTGGACTGCAGTGAAGGCTaGCCAGAGTTTCACTATTGTCAGAGGCTCCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: GCPEGGLDCSEG*PEFHYCQRLLL Trigger: GAGAAGGAGCCTCTGACAATAGTGAAACTCTGGCAAGCCTTCACTGCAGTCCAGCCCACCTTCAGGACAACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS CCA 72 bp | TCTGGCAGCCAGCGTGGGGTTGGCGATTGTGAAGTTTaGACGGCTTCTGGAAAGAATCCCCTTTCCAAAGTA | + |
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Preference number: 6 (lower is better) Translates to: SGSQRGVGDCEV*TASGKNPLSKV Trigger: TACTTTGGAAAGGGGATTCTTTCCAGAAGCCGTCCAAACTTCACAATCGCCAACCCCACGCTGGCTGCCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040234.9 ENSMUST00000130425.8 |
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| CDS TCA 72 bp | GTCCCTGGCCCATTCCACCCGATGCTGATACTTCTCTaGGGTGATTATAGGCATGTCTGTCTGCACACCTTT | + |
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Preference number: 6 (lower is better) Translates to: VPGPFHPMLILL*GDYRHVCLHTF Trigger: AAAGGTGTGCAGACAGACATGCCTATAATCACCTCAGAGAAGTATCAGCATCGGGTGGAATGGGCCAGGGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040234.9 |
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| CDS CAA 90 bp | CCATACAGCTGCTCCATGTCCTCTGTGCCCCTCACCACCACATTGTaGCTAATCATTTCAGCCTGGAATATTCGGAATTCCTTCCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: PYSCSMSSVPLTTTL*LIISAWNIRNSFLG Trigger: TCCCAGGAAGGAATTCCGAATATTCCAGGCTGAAATGATTAGCAACAATGTGGTGGTGAGGGGCACAGAGGACATGGAGCAGCTGTATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040234.9 ENSMUST00000130425.8 |
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| CDS CCA 72 bp | CCCCTCACCACCACATTGTTGCTAATCATTTCAGCCTaGAATATTCGGAATTCCTTCCTGGGACCTTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: PLTTTLLLIISA*NIRNSFLGPWS Trigger: GGACCAAGGTCCCAGGAAGGAATTCCGAATATTCCAGGCTGAAATGATTAGCAACAATGTGGTGGTGAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040234.9 ENSMUST00000130425.8 |
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| CDS CAA 90 bp | TTCCCATACAGCTGCTCCATGTCCTCTGTGCCCCTCACCACCACATaGTTGCTAATCATTTCAGCCTGGAATATTCGGAATTCCTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: FPYSCSMSSVPLTTT*LLIISAWNIRNSFL Trigger: CAGGAAGGAATTCCGAATATTCCAGGCTGAAATGATTAGCAACAATGTGGTGGTGAGGGGCACAGAGGACATGGAGCAGCTGTATGGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040234.9 ENSMUST00000130425.8 |
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| CDS CAA 72 bp | TGCTCCATGTCCTCTGTGCCCCTCACCACCACATTGTaGCTAATCATTTCAGCCTGGAATATTCGGAATTCC | + |
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Preference number: 6 (lower is better) Translates to: CSMSSVPLTTTL*LIISAWNIRNS Trigger: GGAATTCCGAATATTCCAGGCTGAAATGATTAGCAACAATGTGGTGGTGAGGGGCACAGAGGACATGGAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040234.9 ENSMUST00000130425.8 |
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