Pregenerated sensors for TSEN15 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000014980Ensembl transcript IDs: ENSMUST00000015124.15
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCGTTTTCTCCGTACCACTCACTGATACCTGTCTATCGACTACGTaGGATGGCAGAGGCACTGCCAGGCTCCACAACTCTGCACGTATC | + |
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Preference number: 1 (lower is better) Translates to: SVFSVPLTDTCLSTT*DGRGTARLHNSARI Trigger: GATACGTGCAGAGTTGTGGAGCCTGGCAGTGCCTCTGCCATCCCACGTAGTCGATAGACAGGTATCAGTGAGTGGTACGGAGAAAACGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015124.15 |
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| 3UTR CCA 90 bp | GGATGGCAGAGGCACTGCCAGGCTCCACAACTCTGCACGTATCCTTaGTGTAAACCCGCATGCAACTGTACTGTCTCTGATAAGAAAGTT | + |
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Preference number: 1 (lower is better) Translates to: GWQRHCQAPQLCTYP*CKPACNCTVSDKKV Trigger: AACTTTCTTATCAGAGACAGTACAGTTGCATGCGGGTTTACACCAAGGATACGTGCAGAGTTGTGGAGCCTGGCAGTGCCTCTGCCATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015124.15 |
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| 3UTR-3UTR TCA 90 bp | CTGTCTATCGACTACGTGGGATGGCAGAGGCACTGCCAGGCTCCACAACTCTGCCCAATCTTTCAGAACTaGAGTCAGCACCAAGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: LSIDYVGWQRHCQAPQLCPIFQN*SQHQEG Trigger: CCCTTCTTGGTGCTGACTTCAGTTCTGAAAGATTGG...GCAGAGTTGTGGAGCCTGGCAGTGCCTCTGCCATCCCACGTAGTCGATAGACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015124.15 |
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| 3UTR GCA 72 bp | TACCTGTCTATCGACTACGTGGGATGGCAGAGGCACTaGCAGGCTCCACAACTCTGCACGTATCCTTGGTGT | + |
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Preference number: 3 (lower is better) Translates to: YLSIDYVGWQRH*QAPQLCTYPWC Trigger: ACACCAAGGATACGTGCAGAGTTGTGGAGCCTGGCAGTGCCTCTGCCATCCCACGTAGTCGATAGACAGGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015124.15 |
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| 3UTR GCA 72 bp | CCACAACTCTGCACGTATCCTTGGTGTAAACCCGCATaGAACTGTACTGTCTCTGATAAGAAAGTTCTAGGC | + |
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Preference number: 3 (lower is better) Translates to: PQLCTYPWCKPA*NCTVSDKKVLG Trigger: GCCTAGAACTTTCTTATCAGAGACAGTACAGTTGCATGCGGGTTTACACCAAGGATACGTGCAGAGTTGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015124.15 |
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| CDS-3UTR TCA 90 bp | AGAGGCACTGCCAGGCTCCACAACTCTGCACGTATCCTTGGTGTAAACCCGCATTTATCCTATTATGGCTaGGGGAAGCAGAAATGGGTG | + |
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Preference number: 4 (lower is better) Translates to: RGTARLHNSARILGVNPHLSYYG*GKQKWV Trigger: CACCCATTTCTGCTTCCCTCAGCCATAATAGGATAA...ATGCGGGTTTACACCAAGGATACGTGCAGAGTTGTGGAGCCTGGCAGTGCCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015124.15 |
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| CDS-3UTR GCA 90 bp | TGCCATCCTACTGAGACCACTATCAGTAATCTGATTGTCACTTTCATAGCCTGGGTAGGCACCACCGTCTaGAGCCCTTCCCCTTCGATC | + |
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Preference number: 4 (lower is better) Translates to: CHPTETTISNLIVTFIAWVGTTV*SPSPSI Trigger: GATCGAAGGGGAAGGGCTGCAGACGGTGGTGCCTAC...CCAGGCTATGAAAGTGACAATCAGATTACTGATAGTGGTCTCAGTAGGATGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015124.15 |
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| CDS-3UTR CCA 90 bp | AGTGCTTCCATCGGAGAAGGCTTTATTCTGAAAGGAAGTTTATGGGTTGGGACTAGACATCGGCAGTTCTaGATCGCCTTGCAACTTTCT | + |
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Preference number: 4 (lower is better) Translates to: SASIGEGFILKGSLWVGTRHRQF*IALQLS Trigger: AGAAAGTTGCAAGGCGATCCAGAACTGCCGATGTCT...AGTCCCAACCCATAAACTTCCTTTCAGAATAAAGCCTTCTCCGATGGAAGCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015124.15 |
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| CDS-3UTR TCA 90 bp | TCTAGGCTAACTATATTTGCAAGCAATATAGTGCTTCCATCGGAGAAGGCTTTAGACTATTGTGGAATCTaGCTCCACTATGGCCAAAGT | + |
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Preference number: 4 (lower is better) Translates to: SRLTIFASNIVLPSEKALDYCGI*LHYGQS Trigger: ACTTTGGCCATAGTGGAGTCAGATTCCACAATAGTC...TAAAGCCTTCTCCGATGGAAGCACTATATTGCTTGCAAATATAGTTAGCCTAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015124.15 |
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| CDS-3UTR CAA 90 bp | GAGCAGCTCGCTGAGGAGCCTCACATCCAATCTTTCAGAACTGAAGTCAGCACCCAGTTCTGGATCGCCTaGCAACTTTCTAGACGCCTT | + |
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Preference number: 5 (lower is better) Translates to: EQLAEEPHIQSFRTEVSTQFWIA*QLSRRL Trigger: AAGGCGTCTAGAAAGTTGCAAGGCGATCCAGAACTG...GGTGCTGACTTCAGTTCTGAAAGATTGGATGTGAGGCTCCTCAGCGAGCTGCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015124.15 |
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