Pregenerated sensors for TSACC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000010538

Ensembl transcript IDs: ENSMUST00000010682.4, ENSMUST00000107556.10

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TCTGTCGTTGAGCAAGCTGGGTCTGGAGCTGGAGGTTGGCATACATaGACTCGAGGACTCCGAGGCATCCCTTGGGCTTCTGACCAGCTC	+
Preference number: 5 (lower is better) Translates to: SVVEQAGSGAGGWHT*TRGLRGIPWASDQL Trigger: GAGCTGGTCAGAAGCCCAAGGGATGCCTCGGAGTCCTCGAGTGCATGTATGCCAACCTCCAGCTCCAGACCCAGCTTGCTCAACGACAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010682.4 ENSMUST00000107556.10
CDS TCA 90 bp	GCACTCGAGGACTCCGAGGCATCCCTTGGGCTTCTGACCAGCTCCTaGAGACAGCTTTGTCTGGATGGTCAAGAAATTAGCTGGCGTGAA	+
Preference number: 5 (lower is better) Translates to: ALEDSEASLGLLTSS*RQLCLDGQEISWRE Trigger: TTCACGCCAGCTAATTTCTTGACCATCCAGACAAAGCTGTCTTCAGGAGCTGGTCAGAAGCCCAAGGGATGCCTCGGAGTCCTCGAGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010682.4 ENSMUST00000107556.10
CDS TCA 90 bp	GCCAGGGAGAGAACAGTTCTTGCTCTCCCTCCCAGAACCCGGCTGTaGGAGGGATGCCTGCAAGTTTTCCAAAATAGCTATCTGTCGTTG	+
Preference number: 5 (lower is better) Translates to: ARERTVLALPPRTRL*EGCLQVFQNSYLSL Trigger: CAACGACAGATAGCTATTTTGGAAAACTTGCAGGCATCCCTCTCACAGCCGGGTTCTGGGAGGGAGAGCAAGAACTGTTCTCTCCCTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010682.4 ENSMUST00000107556.10
CDS TCA 90 bp	TTGGCATACATGCACTCGAGGACTCCGAGGCATCCCTTGGGCTTCTaGCCAGCTCCTGAAGACAGCTTTGTCTGGATGGTCAAGAAATTA	+
Preference number: 5 (lower is better) Translates to: LAYMHSRTPRHPLGF*PAPEDSFVWMVKKL Trigger: TAATTTCTTGACCATCCAGACAAAGCTGTCTTCAGGAGCTGGTCAGAAGCCCAAGGGATGCCTCGGAGTCCTCGAGTGCATGTATGCCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010682.4 ENSMUST00000107556.10
CDS TCA 90 bp	TGTGAGAGGGATGCCTGCAAGTTTTCCAAAATAGCTATCTGTCGTTaGGCAAGCTGGGTCTGGAGCTGGAGGTTGGCATACATGCACTCG	+
Preference number: 5 (lower is better) Translates to: CERDACKFSKIAICR*ASWVWSWRLAYMHS Trigger: CGAGTGCATGTATGCCAACCTCCAGCTCCAGACCCAGCTTGCTCAACGACAGATAGCTATTTTGGAAAACTTGCAGGCATCCCTCTCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010682.4 ENSMUST00000107556.10
CDS GCA 90 bp	AGACAGCTTTGTCTGGATGGTCAAGAAATTAGCTGGCGTGAAATTTaGTGGAAGATCAATGTAACTGGGGGAGGATTTTGCTGGACAAAA	+
Preference number: 5 (lower is better) Translates to: RQLCLDGQEISWREI*WKINVTGGGFCWTK Trigger: TTTTGTCCAGCAAAATCCTCCCCCAGTTACATTGATCTTCCAGCAAATTTCACGCCAGCTAATTTCTTGACCATCCAGACAAAGCTGTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000010682.4 ENSMUST00000107556.10
CDS GCA 72 bp	GAGCAAGCTGGGTCTGGAGCTGGAGGTTGGCATACATaGACTCGAGGACTCCGAGGCATCCCTTGGGCTTCT	+
Preference number: 6 (lower is better) Translates to: EQAGSGAGGWHT*TRGLRGIPWAS Trigger: AGAAGCCCAAGGGATGCCTCGGAGTCCTCGAGTGCATGTATGCCAACCTCCAGCTCCAGACCCAGCTTGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010682.4 ENSMUST00000107556.10
CDS CCA 72 bp	TCTGTCGTTGAGCAAGCTGGGTCTGGAGCTGGAGGTTaGCATACATGCACTCGAGGACTCCGAGGCATCCCT	+
Preference number: 6 (lower is better) Translates to: SVVEQAGSGAGG*HTCTRGLRGIP Trigger: AGGGATGCCTCGGAGTCCTCGAGTGCATGTATGCCAACCTCCAGCTCCAGACCCAGCTTGCTCAACGACAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010682.4 ENSMUST00000107556.10
CDS CCA 72 bp	TGGCATACATGCACTCGAGGACTCCGAGGCATCCCTTaGGCTTCTGACCAGCTCCTGAAGACAGCTTTGTCT	+
Preference number: 6 (lower is better) Translates to: WHTCTRGLRGIP*ASDQLLKTALS Trigger: AGACAAAGCTGTCTTCAGGAGCTGGTCAGAAGCCCAAGGGATGCCTCGGAGTCCTCGAGTGCATGTATGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010682.4 ENSMUST00000107556.10
CDS GCA 72 bp	ACAGTTTGCAACATAAGCCAGGGAGAGAACAGTTCTTaGTCTCCCTCCCAGAACCCGGCTGTGAGAGGGATG	+
Preference number: 6 (lower is better) Translates to: TVCNISQGENSS*SPSQNPAVRGM Trigger: CATCCCTCTCACAGCCGGGTTCTGGGAGGGAGAGCAAGAACTGTTCTCTCCCTGGCTTATGTTGCAAACTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010682.4 ENSMUST00000107556.10
CDS TCA 72 bp	GACTCCGAGGCATCCCTTGGGCTTCTGACCAGCTCCTaGAGACAGCTTTGTCTGGATGGTCAAGAAATTAGC	+
Preference number: 6 (lower is better) Translates to: DSEASLGLLTSS*RQLCLDGQEIS Trigger: GCTAATTTCTTGACCATCCAGACAAAGCTGTCTTCAGGAGCTGGTCAGAAGCCCAAGGGATGCCTCGGAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010682.4 ENSMUST00000107556.10
CDS CAA 72 bp	AACAGTTTGCAACATAAGCCAGGGAGAGAACAGTTCTaGCTCTCCCTCCCAGAACCCGGCTGTGAGAGGGAT	+
Preference number: 6 (lower is better) Translates to: NSLQHKPGREQF*LSLPEPGCERD Trigger: ATCCCTCTCACAGCCGGGTTCTGGGAGGGAGAGCAAGAACTGTTCTCTCCCTGGCTTATGTTGCAAACTGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010682.4 ENSMUST00000107556.10
CDS TCA 72 bp	AGAACAGTTCTTGCTCTCCCTCCCAGAACCCGGCTGTaGGAGGGATGCCTGCAAGTTTTCCAAAATAGCTAT	+
Preference number: 6 (lower is better) Translates to: RTVLALPPRTRL*EGCLQVFQNSY Trigger: ATAGCTATTTTGGAAAACTTGCAGGCATCCCTCTCACAGCCGGGTTCTGGGAGGGAGAGCAAGAACTGTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010682.4 ENSMUST00000107556.10
CDS CAA 72 bp	GGATGCCTGCAAGTTTTCCAAAATAGCTATCTGTCGTaGAGCAAGCTGGGTCTGGAGCTGGAGGTTGGCATA	+
Preference number: 6 (lower is better) Translates to: GCLQVFQNSYLS*SKLGLELEVGI Trigger: TATGCCAACCTCCAGCTCCAGACCCAGCTTGCTCAACGACAGATAGCTATTTTGGAAAACTTGCAGGCATCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010682.4 ENSMUST00000107556.10
CDS GCA 72 bp	TGTCTGGATGGTCAAGAAATTAGCTGGCGTGAAATTTaGTGGAAGATCAATGTAACTGGGGGAGGATTTTGC	+
Preference number: 6 (lower is better) Translates to: CLDGQEISWREI*WKINVTGGGFC Trigger: GCAAAATCCTCCCCCAGTTACATTGATCTTCCAGCAAATTTCACGCCAGCTAATTTCTTGACCATCCAGACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000010682.4 ENSMUST00000107556.10

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