RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRUB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039826

Ensembl transcript IDs: ENSMUST00000048044.12, ENSMUST00000113807.10, ENSMUST00000156846.8, ENSMUST00000176312.8, ENSMUST00000177133.8, ENSMUST00000177467.8

Found 256 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGGCATCATCCAGGCCGAAGAAGCCATCCCGAGTCCGCCGCACTTaGGTGCAGACAGCGCTGGTCTTCAGCTCCAGGCCGATTTCATGC +
Preference number: 1 (lower is better)
Translates to: RASSRPKKPSRVRRT*VQTALVFSSRPISC
Trigger: GCATGAAATCGGCCTGGAGCTGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCGGCCTGGATGATGCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
3UTR GCA 90 bp CATCATCCAGGCCGAAGAAGCCATCCCGAGTCCGCCGCACTTGCGTaGAGACAGCGCTGGTCTTCAGCTCCAGGCCGATTTCATGCACCA +
Preference number: 1 (lower is better)
Translates to: HHPGRRSHPESAALA*RQRWSSAPGRFHAP
Trigger: TGGTGCATGAAATCGGCCTGGAGCTGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCGGCCTGGATGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
3UTR CCA 90 bp CGAAGAAGCCATCCCGAGTCCGCCGCACTTGCGTGCAGACAGCGCTaGTCTTCAGCTCCAGGCCGATTTCATGCACCAGCTTCCTCAGCT +
Preference number: 1 (lower is better)
Translates to: RRSHPESAALACRQR*SSAPGRFHAPASSA
Trigger: AGCTGAGGAAGCTGGTGCATGAAATCGGCCTGGAGCTGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
3UTR CCA 90 bp GGAGCTGCCGCCTGGATAGCATCCTGGATGTTGTGTAGGTCCCACTaGGTTCTCAGGAGGGCATCATCCAGGCCGAAGAAGCCATCCCGA +
Preference number: 1 (lower is better)
Translates to: GAAAWIASWMLCRSH*VLRRASSRPKKPSR
Trigger: TCGGGATGGCTTCTTCGGCCTGGATGATGCCCTCCTGAGAACCCAGTGGGACCTACACAACATCCAGGATGCTATCCAGGCGGCAGCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
3UTR TCA 90 bp ACTGCCCTGAACAGCTTTCCAACTCCAAAGTGGAGCTTGGGTCCTTaGGACCCCAAGGTTGCCCAGTGCTGGGGAGCTGATGGTGGCCCA +
Preference number: 1 (lower is better)
Translates to: TALNSFPTPKWSLGP*DPKVAQCWGADGGP
Trigger: TGGGCCACCATCAGCTCCCCAGCACTGGGCAACCTTGGGGTCTCAAGGACCCAAGCTCCACTTTGGAGTTGGAAAGCTGTTCAGGGCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR GCA 90 bp ACTTGCGTGCAGACAGCGCTGGTCTTCAGCTCCAGGCCGATTTCATaGACCAGCTTCCTCAGCTGCTGCTGCGTCTCGTGCATACACTGC +
Preference number: 1 (lower is better)
Translates to: TCVQTALVFSSRPIS*TSFLSCCCVSCIHC
Trigger: GCAGTGTATGCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGAAATCGGCCTGGAGCTGAAGACCAGCGCTGTCTGCACGCAAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
3UTR CCA 90 bp AGGTCCAGGTTGGAGTACATCACCAGAGCTTTTTGGTGGGAGCCTTaGATCACAGCCAGGATCCGGTCCAGCCGCTCTCTGGTCACGTGG +
Preference number: 1 (lower is better)
Translates to: RSRLEYITRAFWWEP*ITARIRSSRSLVTW
Trigger: CCACGTGACCAGAGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATGTACTCCAACCTGGACCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
3UTR CCA 90 bp CGTGCATACACTGCACCTATCACCAGAGCTTTTTGGTGGGAGCCTTaGATCACAGCCAGGATCCGGTCCAGCCGCTCTCTGGTCACGTGG +
Preference number: 1 (lower is better)
Translates to: RAYTAPITRAFWWEP*ITARIRSSRSLVTW
Trigger: CCACGTGACCAGAGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATAGGTGCAGTGTATGCACG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176312.8
3UTR CCA 90 bp GCTGCGTCTCGTGCATACACTGCACCTATCACCAGAGCTTTTTGGTaGGAGCCTTGGATCACAGCCAGGATCCGGTCCAGCCGCTCTCTG +
Preference number: 1 (lower is better)
Translates to: AASRAYTAPITRAFW*EPWITARIRSSRSL
Trigger: CAGAGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATAGGTGCAGTGTATGCACGAGACGCAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176312.8
3UTR CCA 90 bp GCTGCTGCGTCTCGTGCATACACTGCACCTATCACCAGAGCTTTTTaGTGGGAGCCTTGGATCACAGCCAGGATCCGGTCCAGCCGCTCT +
Preference number: 1 (lower is better)
Translates to: AAASRAYTAPITRAF*WEPWITARIRSSRS
Trigger: AGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATAGGTGCAGTGTATGCACGAGACGCAGCAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176312.8
3UTR GCA 90 bp TCATGCACCAGCTTCCTCAGCTGCTGCTGCGTCTCGTGCATACACTaGACCTCCAAAAGAAACTCGGGAGGTGCAAAGTGCAGGCAGCGG +
Preference number: 1 (lower is better)
Translates to: SCTSFLSCCCVSCIH*TSKRNSGGAKCRQR
Trigger: CCGCTGCCTGCACTTTGCACCTCCCGAGTTTCTTTTGGAGGTGCAGTGTATGCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR GCA 90 bp CTGCGTCTCGTGCATACACTGCACCTCCAAAAGAAACTCGGGAGGTaGAAAGTGCAGGCAGCGGATGCCAGAGATGAGCATGGGGGACTT +
Preference number: 1 (lower is better)
Translates to: LRLVHTLHLQKKLGR*KVQAADARDEHGGL
Trigger: AAGTCCCCCATGCTCATCTCTGGCATCCGCTGCCTGCACTTTGCACCTCCCGAGTTTCTTTTGGAGGTGCAGTGTATGCACGAGACGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR CCA 90 bp TGGGATTTCAGGTCCAGGTTGGAGTACATCACCAGAGCTTTTTGGTaGGAGCCTTGGATCACAGCCAGGATCCGGTCCAGCCGCTCTCTG +
Preference number: 1 (lower is better)
Translates to: WDFRSRLEYITRAFW*EPWITARIRSSRSL
Trigger: CAGAGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATGTACTCCAACCTGGACCTGAAATCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
3UTR TCA 90 bp ACCCGATGTCTTCTCTGCACCACGCCTTCCACCGGCACCACTGAGTaGACACCATCCCTTGCTGTCCTGTTAGTGTTCACACTGCAGACA +
Preference number: 1 (lower is better)
Translates to: TRCLLCTTPSTGTTE*TPSLAVLLVFTLQT
Trigger: TGTCTGCAGTGTGAACACTAACAGGACAGCAAGGGATGGTGTTCACTCAGTGGTGCCGGTGGAAGGCGTGGTGCAGAGAAGACATCGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR GCA 90 bp AGGCCGATTTCATGCACCAGCTTCCTCAGCTGCTGCTGCGTCTCGTaGATACACTGCACCTCCAAAAGAAACTCGGGAGGTGCAAAGTGC +
Preference number: 1 (lower is better)
Translates to: RPISCTSFLSCCCVS*IHCTSKRNSGGAKC
Trigger: GCACTTTGCACCTCCCGAGTTTCTTTTGGAGGTGCAGTGTATGCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGAAATCGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR GCA 90 bp TTCAGCTCCAGGCCGATTTCATGCACCAGCTTCCTCAGCTGCTGCTaGGTCTCGTGCATACACTGCACCTCCAAAAGAAACTCGGGAGGT +
Preference number: 1 (lower is better)
Translates to: FSSRPISCTSFLSCC*VSCIHCTSKRNSGG
Trigger: ACCTCCCGAGTTTCTTTTGGAGGTGCAGTGTATGCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGAAATCGGCCTGGAGCTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR GCA 90 bp CTGGTCTTCAGCTCCAGGCCGATTTCATGCACCAGCTTCCTCAGCTaGTGCTGCGTCTCGTGCATACACTGCACCTCCAAAAGAAACTCG +
Preference number: 1 (lower is better)
Translates to: LVFSSRPISCTSFLS*CCVSCIHCTSKRNS
Trigger: CGAGTTTCTTTTGGAGGTGCAGTGTATGCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGAAATCGGCCTGGAGCTGAAGACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR GCA 90 bp AGGCCGATTTCATGCACCAGCTTCCTCAGCTGCTGCTGCGTCTCGTaGATACACTGCACCTATCACCAGAGCTTTTTGGTGGGAGCCTTG +
Preference number: 1 (lower is better)
Translates to: RPISCTSFLSCCCVS*IHCTYHQSFLVGAL
Trigger: CAAGGCTCCCACCAAAAAGCTCTGGTGATAGGTGCAGTGTATGCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGAAATCGGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176312.8
3UTR GCA 90 bp CTGGTCTTCAGCTCCAGGCCGATTTCATGCACCAGCTTCCTCAGCTaGTGCTGCGTCTCGTGCATACACTGCACCTATCACCAGAGCTTT +
Preference number: 1 (lower is better)
Translates to: LVFSSRPISCTSFLS*CCVSCIHCTYHQSF
Trigger: AAAGCTCTGGTGATAGGTGCAGTGTATGCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGAAATCGGCCTGGAGCTGAAGACCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176312.8
3UTR TCA 90 bp CGGCAGCATTGTGAGCTCACGACTGAGCTCACAGACTTCAGACAGTaGCTCCCGCTAGGACAGAGATGGCTTCCTCTGGCCATGATGTTA +
Preference number: 1 (lower is better)
Translates to: RQHCELTTELTDFRQ*LPLGQRWLPLAMML
Trigger: TAACATCATGGCCAGAGGAAGCCATCTCTGTCCTAGCGGGAGTCACTGTCTGAAGTCTGTGAGCTCAGTCGTGAGCTCACAATGCTGCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
3UTR GCA 90 bp TCGTGCATACACTGCACCTCCAAAAGAAACTCGGGAGGTGCAAAGTaGAGGCAGCGGATGCCAGAGATGAGCATGGGGGACTTGTTCATG +
Preference number: 1 (lower is better)
Translates to: SCIHCTSKRNSGGAK*RQRMPEMSMGDLFM
Trigger: CATGAACAAGTCCCCCATGCTCATCTCTGGCATCCGCTGCCTGCACTTTGCACCTCCCGAGTTTCTTTTGGAGGTGCAGTGTATGCACGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR GCA 90 bp AGCTTCCTGGGTGACTTACCCAAAAGAAACTCGGGAGGTGCAAAGTaGAGGCAGCGGATGCCAGAGATGAGCATGGGGGACTTGTTCATG +
Preference number: 1 (lower is better)
Translates to: SFLGDLPKRNSGGAK*RQRMPEMSMGDLFM
Trigger: CATGAACAAGTCCCCCATGCTCATCTCTGGCATCCGCTGCCTGCACTTTGCACCTCCCGAGTTTCTTTTGGGTAAGTCACCCAGGAAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177133.8
3UTR GCA 90 bp TTCAGCTCCAGGCCGATTTCATGCACCAGCTTCCTCAGCTGCTGCTaGGTCTCGTGCATACACTGCACCTATCACCAGAGCTTTTTGGTG +
Preference number: 1 (lower is better)
Translates to: FSSRPISCTSFLSCC*VSCIHCTYHQSFLV
Trigger: CACCAAAAAGCTCTGGTGATAGGTGCAGTGTATGCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGAAATCGGCCTGGAGCTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176312.8
3UTR TCA 90 bp ATAAACCCGATGTCTTCTCTGCACCACGCCTTCCACCGGCACCACTaGGTGAACACCATCCCTTGCTGTCCTGTTAGTGTTCACACTGCA +
Preference number: 1 (lower is better)
Translates to: INPMSSLHHAFHRHH*VNTIPCCPVSVHTA
Trigger: TGCAGTGTGAACACTAACAGGACAGCAAGGGATGGTGTTCACTCAGTGGTGCCGGTGGAAGGCGTGGTGCAGAGAAGACATCGGGTTTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR CCA 90 bp AGGTTGCCTAATGTGGCGGCATCCCACATGCTGCAGTGGGTAAGTTaGTTTCCAGTGGACTTGAAGATGCCAGAATGGGTGTTTGTGGCT +
Preference number: 1 (lower is better)
Translates to: RLPNVAASHMLQWVS*FPVDLKMPEWVFVA
Trigger: AGCCACAAACACCCATTCTGGCATCTTCAAGTCCACTGGAAACCAACTTACCCACTGCAGCATGTGGGATGCCGCCACATTAGGCAACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
3UTR CCA 90 bp CTGCTGAGGACACCACACTTGGTGACAGCATATGAAGAACAGACCTaGAAACCTCTCCTAACACTGGAAGGTGCTGCGCAGGTTACACAG +
Preference number: 1 (lower is better)
Translates to: LLRTPHLVTAYEEQT*KPLLTLEGAAQVTQ
Trigger: CTGTGTAACCTGCGCAGCACCTTCCAGTGTTAGGAGAGGTTTCCAGGTCTGTTCTTCATATGCTGTCACCAAGTGTGGTGTCCTCAGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR TCA 90 bp ATGACAGACCATGCTGCTGAGGACACCACACTTGGTGACAGCATATaGAGAACAGACCTGGAAACCTCTCCTAACACTGGAAGGTGCTGC +
Preference number: 1 (lower is better)
Translates to: MTDHAAEDTTLGDSI*RTDLETSPNTGRCC
Trigger: GCAGCACCTTCCAGTGTTAGGAGAGGTTTCCAGGTCTGTTCTTCATATGCTGTCACCAAGTGTGGTGTCCTCAGCAGCATGGTCTGTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR GCA 90 bp TCACACTGCAGACACCAACAATCATCAGCCTGTAAGTGTTCACACTaGAGACACCAACAATCATCAGCCTGTAAGTGTTCACACTGCAGA +
Preference number: 1 (lower is better)
Translates to: SHCRHQQSSACKCSH*RHQQSSACKCSHCR
Trigger: TCTGCAGTGTGAACACTTACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTTACAGGCTGATGATTGTTGGTGTCTGCAGTGTGA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR GCA 90 bp TCTGTTATGTGTCGTAATGCTAAATACTGGCCCCCAAGGTCTGGTTaGCTCAGGAAGAGAAGATCTTCAATGTGCACCAAGTCTATGGAA +
Preference number: 1 (lower is better)
Translates to: SVMCRNAKYWPPRSG*LRKRRSSMCTKSME
Trigger: TTCCATAGACTTGGTGCACATTGAAGATCTTCTCTTCCTGAGGCAACCAGACCTTGGGGGCCAGTATTTAGCATTACGACACATAACAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR GCA 90 bp GATATAGTGGCACACACTTTAATCCTAACACTCAGGAGGCAAAGGTaGTCAGAGCTCAAGGTCAGCATAATCTACAAAGTGAGTTCCAAG +
Preference number: 1 (lower is better)
Translates to: DIVAHTLILTLRRQR*SELKVSIIYKVSSK
Trigger: CTTGGAACTCACTTTGTAGATTATGCTGACCTTGAGCTCTGAGCACCTTTGCCTCCTGAGTGTTAGGATTAAAGTGTGTGCCACTATATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR CAA 90 bp TCCGCTGCCACCCGGGGAGCTGCCGCCTGGATAGCATCCTGGATGTaGTGTAGGTCCCACTGGGTTCTCAGGAGGGCATCATCCAGGCCG +
Preference number: 2 (lower is better)
Translates to: SAATRGAAAWIASWM*CRSHWVLRRASSRP
Trigger: CGGCCTGGATGATGCCCTCCTGAGAACCCAGTGGGACCTACACAACATCCAGGATGCTATCCAGGCGGCAGCTCCCCGGGTGGCAGCGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
3UTR CAA 90 bp GAGGGCATCATCCAGGCCGAAGAAGCCATCCCGAGTCCGCCGCACTaGCGTGCAGACAGCGCTGGTCTTCAGCTCCAGGCCGATTTCATG +
Preference number: 2 (lower is better)
Translates to: EGIIQAEEAIPSPPH*RADSAGLQLQADFM
Trigger: CATGAAATCGGCCTGGAGCTGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCGGCCTGGATGATGCCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
3UTR-3UTR CCA 90 bp TCCCACTGGGTTCTCAGGAGGGCATCATCCAGGCCGAAGAAGCCATCCCGAGTCGACGATAGGCCCCCATaGCCACACCTGCTTGCCTCT +
Preference number: 2 (lower is better)
Translates to: SHWVLRRASSRPKKPSRVDDRPP*PHLLAS
Trigger: AGAGGCAAGCAGGTGTGGCCATGGGGGCCTATCGTC...GACTCGGGATGGCTTCTTCGGCCTGGATGATGCCCTCCTGAGAACCCAGTGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR-3UTR CCA 90 bp CCGCACTTGCGTGCAGACAGCGCTGGTCTTCAGCTCCAGGCCGATTTCATGCACGGTCCAGCCGCTCTCTaGTCACGTGGTCATACGTTG +
Preference number: 2 (lower is better)
Translates to: PHLRADSAGLQLQADFMHGPAAL*SRGHTL
Trigger: CAACGTATGACCACGTGACCAGAGAGCGGCTGGACC...GTGCATGAAATCGGCCTGGAGCTGAAGACCAGCGCTGTCTGCACGCAAGTGCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
3UTR CAA 90 bp CAGGTCCAGGTTGGAGTACATCACCAGAGCTTTTTGGTGGGAGCCTaGGATCACAGCCAGGATCCGGTCCAGCCGCTCTCTGGTCACGTG +
Preference number: 2 (lower is better)
Translates to: QVQVGVHHQSFLVGA*DHSQDPVQPLSGHV
Trigger: CACGTGACCAGAGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATGTACTCCAACCTGGACCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
3UTR CAA 90 bp TGCTGCTGCGTCTCGTGCATACACTGCACCTATCACCAGAGCTTTTaGGTGGGAGCCTTGGATCACAGCCAGGATCCGGTCCAGCCGCTC +
Preference number: 2 (lower is better)
Translates to: CCCVSCIHCTYHQSF*VGALDHSQDPVQPL
Trigger: GAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATAGGTGCAGTGTATGCACGAGACGCAGCAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176312.8
3UTR-3UTR CCA 90 bp ACAGAGGAAGGCCGTGCTCCCTCCAGGTTGCCTAATGTGGCGGCATCCCACATGCCGCTAGGACAGAGATaGCTTCCTCTGGCCATGATG +
Preference number: 2 (lower is better)
Translates to: TEEGRAPSRLPNVAASHMPLGQR*LPLAMM
Trigger: CATCATGGCCAGAGGAAGCCATCTCTGTCCTAGCGG...CATGTGGGATGCCGCCACATTAGGCAACCTGGAGGGAGCACGGCCTTCCTCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
3UTR CAA 90 bp GCCTCCCAATTAGCTGGGACGATAGGCCCCCATGGCCACACCTGCTaGCCTCTGCAGTTAGTCTGTGTCTCAAGGATAATGGCTCAGGGG +
Preference number: 2 (lower is better)
Translates to: ASQLAGTIGPHGHTC*PLQLVCVSRIMAQG
Trigger: CCCCTGAGCCATTATCCTTGAGACACAGACTAACTGCAGAGGCAAGCAGGTGTGGCCATGGGGGCCTATCGTCCCAGCTAATTGGGAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR CAA 90 bp TCGTGCATACACTGCACCTATCACCAGAGCTTTTTGGTGGGAGCCTaGGATCACAGCCAGGATCCGGTCCAGCCGCTCTCTGGTCACGTG +
Preference number: 2 (lower is better)
Translates to: SCIHCTYHQSFLVGA*DHSQDPVQPLSGHV
Trigger: CACGTGACCAGAGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATAGGTGCAGTGTATGCACGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176312.8
3UTR-3UTR CCA 90 bp CTCCTGGTGGAAAGAAGCCACTCGGGGCTGGGCATGCCGCACATGACTCCATCAACCAGAGCTTTTTGGTaGGAGCCTTGGATCACAGCC +
Preference number: 2 (lower is better)
Translates to: LLVERSHSGLGMPHMTPSTRAFW*EPWITA
Trigger: GGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGT...TGATGGAGTCATGTGCGGCATGCCCAGCCCCGAGTGGCTTCTTTCCACCAGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177133.8
3UTR-3UTR TCA 90 bp GCATCTTCTTGGTGGCTCACAACTGCCTTTAAGCCCAGCCACAGGGCTCTTACAACGGCCAAGGAGTGCTaGGGCAGCGGCATTTCCCAT +
Preference number: 2 (lower is better)
Translates to: ASSWWLTTAFKPSHRALTTAKEC*GSGISH
Trigger: ATGGGAAATGCCGCTGCCTCAGCACTCCTTGGCCGT...TGTAAGAGCCCTGTGGCTGGGCTTAAAGGCAGTTGTGAGCCACCAAGAAGATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR CCA 90 bp TGCAAAGTGCAGGCAGCGGATGCCAGAGATGAGCATGGGGGACTTGTTCATGGGTTTTGGTGGGAGCCTTaGATCACAGCCAGGATCCGG +
Preference number: 2 (lower is better)
Translates to: CKVQAADARDEHGGLVHGFWWEP*ITARIR
Trigger: CCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAA...CCCATGAACAAGTCCCCCATGCTCATCTCTGGCATCCGCTGCCTGCACTTTGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
3UTR-3UTR CCA 90 bp GCTGCCGCCTGGATAGCATCCTGGATGTTGTGTAGGTCCCACTGGGTTCTCAGGACCAGAGCTTTTTGGTaGGAGCCTTGGATCACAGCC +
Preference number: 2 (lower is better)
Translates to: AAAWIASWMLCRSHWVLRTRAFW*EPWITA
Trigger: GGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGT...CCTGAGAACCCAGTGGGACCTACACAACATCCAGGATGCTATCCAGGCGGCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
3UTR CAA 90 bp GCCAGAGATGAGCATGGGGGACTTGTTCATGGGCCTGATCACACCTaGCACAGCCATCTCATAGGCCTCCTGGGATTTCAGGTCCAGGTT +
Preference number: 2 (lower is better)
Translates to: ARDEHGGLVHGPDHT*HSHLIGLLGFQVQV
Trigger: AACCTGGACCTGAAATCCCAGGAGGCCTATGAGATGGCTGTGCAAGGTGTGATCAGGCCCATGAACAAGTCCCCCATGCTCATCTCTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
3UTR-3UTR GCA 90 bp CCCGATGTCTTCTCTGCACCACGCCTTCCACCGGCACCACTGAGTGAACACCATAGGCCTGAGACATCATaGCTGACTCTGAGTCAAGGT +
Preference number: 2 (lower is better)
Translates to: PDVFSAPRLPPAPLSEHHRPETS*LTLSQG
Trigger: ACCTTGACTCAGAGTCAGGCATGATGTCTCAGGCCT...ATGGTGTTCACTCAGTGGTGCCGGTGGAAGGCGTGGTGCAGAGAAGACATCGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR CCA 90 bp TCAGGTCCAGGTTGGAGTACATCACCAGAGCTTTTTGGTGGGAGCCTTGGATCAGGTCCAGCCGCTCTCTaGTCACGTGGTCATACGTTG +
Preference number: 2 (lower is better)
Translates to: SGPGWSTSPELFGGSLGSGPAAL*SRGHTL
Trigger: CAACGTATGACCACGTGACCAGAGAGCGGCTGGACC...TGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATGTACTCCAACCTGGACCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
3UTR-3UTR CCA 90 bp GACAGCGCTGGTCTTCAGCTCCAGGCCGATTTCATGCACCAGCTTCCTCAGCTGATCACCAGAGCTTTTTaGTGGGAGCCTTGGATCACA +
Preference number: 2 (lower is better)
Translates to: DSAGLQLQADFMHQLPQLITRAF*WEPWIT
Trigger: TGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGAT...CAGCTGAGGAAGCTGGTGCATGAAATCGGCCTGGAGCTGAAGACCAGCGCTGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
3UTR-3UTR TCA 90 bp ATAGCATCCTGGATGTTGTGTAGGTCCCACTGGGTTCTCAGGAGGGCATCATCCACCAGTTCTGACCTGTaGAGAGCCTGTTTGCTCTCC +
Preference number: 2 (lower is better)
Translates to: IASWMLCRSHWVLRRASSTSSDL*RACLLS
Trigger: GGAGAGCAAACAGGCTCTTCACAGGTCAGAACTGGT...GGATGATGCCCTCCTGAGAACCCAGTGGGACCTACACAACATCCAGGATGCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR-3UTR CCA 90 bp CTCTTACATCCTTTCCTAGCCTCCATGATGCACCAGGTGTGGACATACATGCATGACGATAGGCCCCCATaGCCACACCTGCTTGCCTCT +
Preference number: 2 (lower is better)
Translates to: LLHPFLASMMHQVWTYMHDDRPP*PHLLAS
Trigger: AGAGGCAAGCAGGTGTGGCCATGGGGGCCTATCGTC...ATGCATGTATGTCCACACCTGGTGCATCATGGAGGCTAGGAAAGGATGTAAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR TCA 90 bp TGCTGGGGAGCTGATGGTGGCCCAGCTTTAGGCTCAAGTTCTTTTGCAGTTCCGCTAAGATTACAGGCCTaGGACATCATGCCTGACTCT +
Preference number: 2 (lower is better)
Translates to: CWGADGGPALGSSSFAVPLRLQA*DIMPDS
Trigger: AGAGTCAGGCATGATGTCTCAGGCCTGTAATCTTAG...CGGAACTGCAAAAGAACTTGAGCCTAAAGCTGGGCCACCATCAGCTCCCCAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR-3UTR TCA 90 bp CTGTATTTTATAAACCCGATGTCTTCTCTGCACCACGCCTTCCACCGGCACCACAGCCCAGGCTGGCCTTaGACTCACGATTTTCCTTTC +
Preference number: 2 (lower is better)
Translates to: LYFINPMSSLHHAFHRHHSPGWP*THDFPF
Trigger: GAAAGGAAAATCGTGAGTTCAAGGCCAGCCTGGGCT...GTGGTGCCGGTGGAAGGCGTGGTGCAGAGAAGACATCGGGTTTATAAAATACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR TCA 90 bp TTACATCCTTTCCTAGCCTCCATGATGCACCAGGTGTGGACATACATGCATGTAACGGCCAAGGAGTGCTaGGGCAGCGGCATTTCCCAT +
Preference number: 2 (lower is better)
Translates to: LHPFLASMMHQVWTYMHVTAKEC*GSGISH
Trigger: ATGGGAAATGCCGCTGCCTCAGCACTCCTTGGCCGT...TACATGCATGTATGTCCACACCTGGTGCATCATGGAGGCTAGGAAAGGATGTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR GCA 90 bp ACACCATCCCTTGCTGTCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCCCCCATGGCCACACCTaGTTGCCTCTGCAGTTAGTC +
Preference number: 2 (lower is better)
Translates to: TPSLAVLLVFTLQTPTIIPHGHT*LPLQLV
Trigger: GACTAACTGCAGAGGCAAGCAGGTGTGGCCATGGGG...GATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGACAGCAAGGGATGGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR GCA 90 bp GAAAGTGAAAAGGTATCTATCTACACATGGGGGCAAAGTACCTACTACAGAGAGCGAGTCCGCCGCACTTaGGTGCAGACAGCGCTGGTC +
Preference number: 2 (lower is better)
Translates to: ESEKVSIYTWGQSTYYRERVRRT*VQTALV
Trigger: GACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCG...CTCTCTGTAGTAGGTACTTTGCCCCCATGTGTAGATAGATACCTTTTCACTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR-3UTR TCA 90 bp ACACCAACAATCATCAGCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCTGGCTCAGGGGCCCCTaGTCTCATTACTCCTGCGGA +
Preference number: 2 (lower is better)
Translates to: TPTIISLLVFTLQTPTIIWLRGP*SHYSCG
Trigger: TCCGCAGGAGTAATGAGATCAGGGGCCCCTGAGCCA...GATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGCTGATGATTGTTGGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR CCA 90 bp AGCTTCCTGGGTGACTTACCCAAAAGAAACTCGGGAGGTGCAAAGTGCAGGCAGATCACCAGAGCTTTTTaGTGGGAGCCTTGGATCACA +
Preference number: 2 (lower is better)
Translates to: SFLGDLPKRNSGGAKCRQITRAF*WEPWIT
Trigger: TGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGAT...CTGCCTGCACTTTGCACCTCCCGAGTTTCTTTTGGGTAAGTCACCCAGGAAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177133.8
3UTR CAA 90 bp GCGGCATCCCACATGCTGCAGTGGGTAAGTTGGTTTCCAGTGGACTaGAAGATGCCAGAATGGGTGTTTGTGGCTTCCTTTAACGTGATA +
Preference number: 2 (lower is better)
Translates to: AASHMLQWVSWFPVD*KMPEWVFVASFNVI
Trigger: TATCACGTTAAAGGAAGCCACAAACACCCATTCTGGCATCTTCAAGTCCACTGGAAACCAACTTACCCACTGCAGCATGTGGGATGCCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
3UTR-3UTR TCA 90 bp ACACCATCCCTTGCTGTCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCACCAGTTCTGACCTGTaGAGAGCCTGTTTGCTCTCC +
Preference number: 2 (lower is better)
Translates to: TPSLAVLLVFTLQTPTIITSSDL*RACLLS
Trigger: GGAGAGCAAACAGGCTCTTCACAGGTCAGAACTGGT...GATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGACAGCAAGGGATGGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR TCA 90 bp CTTGTTCAGACTGGCCTTAAACTCAGAGCCATCCTCCTGGCTCAGCTGAGTAGTACCCTAGGCTGGCCTTaGACTGTTAAGATTCTAACC +
Preference number: 2 (lower is better)
Translates to: LVQTGLKLRAILLAQLSSTLGWP*TVKILT
Trigger: GGTTAGAATCTTAACAGTTCAAGGCCAGCCTAGGGT...ACTACTCAGCTGAGCCAGGAGGATGGCTCTGAGTTTAAGGCCAGTCTGAACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR TCA 90 bp CTTGTTCAGACTGGCCTTAAACTCAGAGCCATCCTCCTGGCTCAGCTGAGTAGTAAGACTTTCCCTCTGTaGAAAGATCATCGCTCACGG +
Preference number: 2 (lower is better)
Translates to: LVQTGLKLRAILLAQLSSKTFPL*KDHRSR
Trigger: CCGTGAGCGATGATCTTTTCACAGAGGGAAAGTCTT...ACTACTCAGCTGAGCCAGGAGGATGGCTCTGAGTTTAAGGCCAGTCTGAACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR GCA 90 bp ACACCATCCCTTGCTGTCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCAAGAAACTCGGGAGGTaGAAAGTGCAGGCAGCGGAT +
Preference number: 2 (lower is better)
Translates to: TPSLAVLLVFTLQTPTIIKKLGR*KVQAAD
Trigger: ATCCGCTGCCTGCACTTTGCACCTCCCGAGTTTCTT...GATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGACAGCAAGGGATGGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR-3UTR CCA 90 bp CCTAATGTGGCGGCATCCCACATGCTGCAGTGGGTAAGTTGGTTTCCAGTGGACTTGAAGATGCCAGAATaGGTGTTTGTGGCTTCCTTT +
Preference number: 2 (lower is better)
Translates to: PNVAASHMLQWVSWFPVDLKMPE*VFVASF
Trigger: AAAGGAAGCCACAAACACCCATTCTGGCATCTTCAA...GTCCACTGGAAACCAACTTACCCACTGCAGCATGTGGGATGCCGCCACATTAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
3UTR-3UTR TCA 90 bp CATCAGCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCAGCCTGTAAGTCGGAGTGACCAGTTCTaGCCTGTGAAGAGCCTGTTT +
Preference number: 2 (lower is better)
Translates to: HQPVSVHTADTNNHQPVSRSDQF*PVKSLF
Trigger: AAACAGGCTCTTCACAGGTCAGAACTGGTCACTCCG...ACTTACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGCTGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR CCA 90 bp GCAGACACCAACAATCATCAGCCTGTTAGTGTTCACACTGCAGACACCAACAATGCCTGGATAGCATCCTaGATGTTGTGTAGGTCCCAC +
Preference number: 2 (lower is better)
Translates to: ADTNNHQPVSVHTADTNNAWIAS*MLCRSH
Trigger: GTGGGACCTACACAACATCCAGGATGCTATCCAGGC...ATTGTTGGTGTCTGCAGTGTGAACACTAACAGGCTGATGATTGTTGGTGTCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR-3UTR GCA 90 bp TCAGCCTGTAAGTGTTCACACTGCAGACACCAACAATCATCAGCCTGTAAGTGTAGGCCTGAGACATCATaGCTGACTCTGAGTCAAGGT +
Preference number: 2 (lower is better)
Translates to: SACKCSHCRHQQSSACKCRPETS*LTLSQG
Trigger: ACCTTGACTCAGAGTCAGGCATGATGTCTCAGGCCT...ACACTTACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTTACAGGCTGA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR CCA 90 bp GCATCTTCTTGGTGGCTCACAACTGCCTTTAAGCCCAGCCACAGGGCTCTTACAATGATGCACCAGGTGTaGACATACATGCATGTAAAT +
Preference number: 2 (lower is better)
Translates to: ASSWWLTTAFKPSHRALTMMHQV*TYMHVN
Trigger: ATTTACATGCATGTATGTCCACACCTGGTGCATCAT...TGTAAGAGCCCTGTGGCTGGGCTTAAAGGCAGTTGTGAGCCACCAAGAAGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR CAA 90 bp TTTGTCAGGTCACCCAGATCCTTCAAACAATCCAAGCTAATGCTATaGCTCTTGGTTACCCAGCAGAACATGACAGACCATGCTGCTGAG +
Preference number: 2 (lower is better)
Translates to: FVRSPRSFKQSKLML*LLVTQQNMTDHAAE
Trigger: CTCAGCAGCATGGTCTGTCATGTTCTGCTGGGTAACCAAGAGCAATAGCATTAGCTTGGATTGTTTGAAGGATCTGGGTGACCTGACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR-3UTR TCA 90 bp AAGTGTTCACACTGCAGACACCAACAATCATCAGCCTGTAAGTGTTCACACTGCCTAAGATTACAGGCCTaGGACATCATGCCTGACTCT +
Preference number: 2 (lower is better)
Translates to: KCSHCRHQQSSACKCSHCLRLQA*DIMPDS
Trigger: AGAGTCAGGCATGATGTCTCAGGCCTGTAATCTTAG...GCAGTGTGAACACTTACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR TCA 90 bp CAGCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCAGCCTGTTAGTGTTCATCAGTTGAAAAGCTaGACACTGCAAGTAGCCCAG +
Preference number: 2 (lower is better)
Translates to: QPVSVHTADTNNHQPVSVHQLKS*TLQVAQ
Trigger: CTGGGCTACTTGCAGTGTTCAGCTTTTCAACTGATG...AACACTAACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR CCA 90 bp CAGACACCAACAATCATCAGCCTGTTAGTGTTCACACTGCAGACACCAACAATCGTTAAGATTCTAACCTaGGCCTCCCAATTAGCTGGG +
Preference number: 2 (lower is better)
Translates to: QTPTIISLLVFTLQTPTIVKILT*ASQLAG
Trigger: CCCAGCTAATTGGGAGGCCCAGGTTAGAATCTTAAC...GATTGTTGGTGTCTGCAGTGTGAACACTAACAGGCTGATGATTGTTGGTGTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR TCA 90 bp ATCACAGGGCAGGCAATTAAATTAAATTCTGAAGAAATGGACCAGTGGTTAAGCAGCGGATGCCAGAGATaGGCATGGGGGACTTGTTCA +
Preference number: 2 (lower is better)
Translates to: ITGQAIKLNSEEMDQWLSSGCQR*AWGTCS
Trigger: TGAACAAGTCCCCCATGCTCATCTCTGGCATCCGCT...GCTTAACCACTGGTCCATTTCTTCAGAATTTAATTTAATTGCCTGCCCTGTGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR-3UTR CCA 90 bp CATCAGCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCAGCCTGTAAGTTCAGCATCTTCTTGGTaGCTCACAACTGCCTTTAAG +
Preference number: 2 (lower is better)
Translates to: HQPVSVHTADTNNHQPVSSASSW*LTTAFK
Trigger: CTTAAAGGCAGTTGTGAGCCACCAAGAAGATGCTGA...ACTTACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGCTGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR CCA 90 bp TTGCCTCAGGAAGAGAAGATCTTCAATGTGCACCAAGTCTATGGAACCTTGTCCTTGTCAGCATCTTCTTaGTGGCTCACAACTGCCTTT +
Preference number: 2 (lower is better)
Translates to: LPQEEKIFNVHQVYGTLSLSASS*WLTTAF
Trigger: AAAGGCAGTTGTGAGCCACCAAGAAGATGCTGACAA...GGACAAGGTTCCATAGACTTGGTGCACATTGAAGATCTTCTCTTCCTGAGGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR-3UTR CCA 90 bp GAAGTATTTCCTGAGCACAGAGAAGCTCTCCAAGAAGGCATATGCCCATGTTTTCTGCAGTGGGTAAGTTaGTTTCCAGTGGACTTGAAG +
Preference number: 2 (lower is better)
Translates to: EVFPEHREALQEGICPCFLQWVS*FPVDLK
Trigger: CTTCAAGTCCACTGGAAACCAACTTACCCACTGCAG...AAAACATGGGCATATGCCTTCTTGGAGAGCTTCTCTGTGCTCAGGAAATACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
3UTR-3UTR GCA 90 bp ACACCATCCCTTGCTGTCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCTGTAAGTGTTCACACTaGAGACACCAACAATCATCA +
Preference number: 2 (lower is better)
Translates to: TPSLAVLLVFTLQTPTIICKCSH*RHQQSS
Trigger: TGATGATTGTTGGTGTCTGCAGTGTGAACACTTACA...GATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGACAGCAAGGGATGGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR CCA 90 bp ACCAACAATCATCAGCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCAGTTTCCTTTCTACCTCTaGAGGGCTAAGATTACAGGC +
Preference number: 2 (lower is better)
Translates to: TNNHQPVSVHTADTNNHQFPFYL*RAKITG
Trigger: GCCTGTAATCTTAGCCCTCCAGAGGTAGAAAGGAAA...CTGATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGCTGATGATTGTTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR TCA 90 bp ATCACAGGGCAGGCAATTAAATTAAATTCTGAAGAAATGGACCAGTGGTTAAGCCTGAGATCTCAGCTGTaGGACACCTTGAAACAGCAA +
Preference number: 2 (lower is better)
Translates to: ITGQAIKLNSEEMDQWLSLRSQL*DTLKQQ
Trigger: TTGCTGTTTCAAGGTGTCTCACAGCTGAGATCTCAG...GCTTAACCACTGGTCCATTTCTTCAGAATTTAATTTAATTGCCTGCCCTGTGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR TCA 90 bp ACCAACAATCATCAGCCTGTAAGTGTTCACACTGCAGACACCAACAATCATCAGGGCAGGATTAAATACTaGCACATACCACAAAGTACT +
Preference number: 2 (lower is better)
Translates to: TNNHQPVSVHTADTNNHQGRIKY*HIPQST
Trigger: AGTACTTTGTGGTATGTGTCAGTATTTAATCCTGCC...CTGATGATTGTTGGTGTCTGCAGTGTGAACACTTACAGGCTGATGATTGTTGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR CCA 90 bp ATCACAGGGCAGGCAATTAAATTAAATTCTGAAGAAATGGACCAGTGGTTAAGCACGTTTCATGTAGCCTaGAACTTATGTAGCCAAAGA +
Preference number: 2 (lower is better)
Translates to: ITGQAIKLNSEEMDQWLSTFHVA*NLCSQR
Trigger: TCTTTGGCTACATAAGTTCCAGGCTACATGAAACGT...GCTTAACCACTGGTCCATTTCTTCAGAATTTAATTTAATTGCCTGCCCTGTGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR GCA 72 bp GGCCGAAGAAGCCATCCCGAGTCCGCCGCACTTGCGTaGAGACAGCGCTGGTCTTCAGCTCCAGGCCGATTT +
Preference number: 3 (lower is better)
Translates to: GRRSHPESAALA*RQRWSSAPGRF
Trigger: AAATCGGCCTGGAGCTGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
3UTR CCA 72 bp GCTGCCACCCGGGGAGCTGCCGCCTGGATAGCATCCTaGATGTTGTGTAGGTCCCACTGGGTTCTCAGGAGG +
Preference number: 3 (lower is better)
Translates to: AATRGAAAWIAS*MLCRSHWVLRR
Trigger: CCTCCTGAGAACCCAGTGGGACCTACACAACATCCAGGATGCTATCCAGGCGGCAGCTCCCCGGGTGGCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
3UTR CCA 72 bp CATCCCGAGTCCGCCGCACTTGCGTGCAGACAGCGCTaGTCTTCAGCTCCAGGCCGATTTCATGCACCAGCT +
Preference number: 3 (lower is better)
Translates to: HPESAALACRQR*SSAPGRFHAPA
Trigger: AGCTGGTGCATGAAATCGGCCTGGAGCTGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
3UTR-3UTR CAA 90 bp AGGAGGGCATCATCCAGGCCGAAGAAGCCATCCCGAGTCCGCCGCACTTGCGTGCATGGCCACACCTGCTaGCCTCTGCAGTTAGTCTGT +
Preference number: 3 (lower is better)
Translates to: RRASSRPKKPSRVRRTCVHGHTC*PLQLVC
Trigger: ACAGACTAACTGCAGAGGCAAGCAGGTGTGGCCATG...CACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCGGCCTGGATGATGCCCTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR GCA 72 bp AAATGCCCACAGAGGAAGGCCGTGCTCCCTCCAGGTTaGCTAATGTGGCGGCATCCCACATGCTGCAGTGGG +
Preference number: 3 (lower is better)
Translates to: KCPQRKAVLPPG*LMWRHPTCCSG
Trigger: CCCACTGCAGCATGTGGGATGCCGCCACATTAGGCAACCTGGAGGGAGCACGGCCTTCCTCTGTGGGCATTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
3UTR GCA 72 bp CAGACAGCGCTGGTCTTCAGCTCCAGGCCGATTTCATaGACCAGCTTCCTCAGCTGCTGCTGCGTCTCGTGC +
Preference number: 3 (lower is better)
Translates to: QTALVFSSRPIS*TSFLSCCCVSC
Trigger: GCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGAAATCGGCCTGGAGCTGAAGACCAGCGCTGTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
3UTR CCA 72 bp CTGGGCCTCCCAATTAGCTGGGACGATAGGCCCCCATaGCCACACCTGCTTGCCTCTGCAGTTAGTCTGTGT +
Preference number: 3 (lower is better)
Translates to: LGLPISWDDRPP*PHLLASAVSLC
Trigger: ACACAGACTAACTGCAGAGGCAAGCAGGTGTGGCCATGGGGGCCTATCGTCCCAGCTAATTGGGAGGCCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR CCA 72 bp ACAGGAGACAGAGCAGAGCCTTTGTGCTACTCCTGGTaGAAAGAAGCCACTCGGGGCTGGGCATGCCGCACA +
Preference number: 3 (lower is better)
Translates to: TGDRAEPLCYSW*KEATRGWACRT
Trigger: TGTGCGGCATGCCCAGCCCCGAGTGGCTTCTTTCCACCAGGAGTAGCACAAAGGCTCTGCTCTGTCTCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177133.8
3UTR-3UTR CAA 90 bp GGTCCCACTGGGTTCTCAGGAGGGCATCATCCAGGCCGAAGAAGCCATCCCGAGCATCACCAGAGCTTTTaGGTGGGAGCCTTGGATCAC +
Preference number: 3 (lower is better)
Translates to: GPTGFSGGHHPGRRSHPEHHQSF*VGALDH
Trigger: GTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATG...CTCGGGATGGCTTCTTCGGCCTGGATGATGCCCTCCTGAGAACCCAGTGGGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR-3UTR CAA 90 bp TCCGCTGCCACCCGGGGAGCTGCCGCCTGGATAGCATCCTGGATGTTGTGTAGGTATCACCAGAGCTTTTaGGTGGGAGCCTTGGATCAC +
Preference number: 3 (lower is better)
Translates to: SAATRGAAAWIASWMLCRYHQSF*VGALDH
Trigger: GTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATA...CCTACACAACATCCAGGATGCTATCCAGGCGGCAGCTCCCCGGGTGGCAGCGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176312.8
3UTR TCA 72 bp TTGTTCAATCCTGGGAAGCTGGGGAGCACGGAGCTGTaGGCTCACGGCAGCATTGTGAGCTCACGACTGAGC +
Preference number: 3 (lower is better)
Translates to: LFNPGKLGSTEL*AHGSIVSSRLS
Trigger: GCTCAGTCGTGAGCTCACAATGCTGCCGTGAGCTCACAGCTCCGTGCTCCCCAGCTTCCCAGGATTGAACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
3UTR GCA 72 bp CACTGCACCTCCAAAAGAAACTCGGGAGGTGCAAAGTaGAGGCAGCGGATGCCAGAGATGAGCATGGGGGAC +
Preference number: 3 (lower is better)
Translates to: HCTSKRNSGGAK*RQRMPEMSMGD
Trigger: GTCCCCCATGCTCATCTCTGGCATCCGCTGCCTGCACTTTGCACCTCCCGAGTTTCTTTTGGAGGTGCAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR-3UTR CAA 90 bp GAGACAGAGCAGAGCCTTTGTGCTACTCCTGGTGGAAAGAAGCCACTCGGGGCTTTTTTGGTGGGAGCCTaGGATCACAGCCAGGATCCG +
Preference number: 3 (lower is better)
Translates to: ETEQSLCATPGGKKPLGAFLVGA*DHSQDP
Trigger: CGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAA...AGCCCCGAGTGGCTTCTTTCCACCAGGAGTAGCACAAAGGCTCTGCTCTGTCTC
57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000177133.8
3UTR TCA 72 bp TGTGAGCTCACGACTGAGCTCACAGACTTCAGACAGTaGCTCCCGCTAGGACAGAGATGGCTTCCTCTGGCC +
Preference number: 3 (lower is better)
Translates to: CELTTELTDFRQ*LPLGQRWLPLA
Trigger: GGCCAGAGGAAGCCATCTCTGTCCTAGCGGGAGTCACTGTCTGAAGTCTGTGAGCTCAGTCGTGAGCTCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
3UTR GCA 72 bp GGTGACTTACCCAAAAGAAACTCGGGAGGTGCAAAGTaGAGGCAGCGGATGCCAGAGATGAGCATGGGGGAC +
Preference number: 3 (lower is better)
Translates to: GDLPKRNSGGAK*RQRMPEMSMGD
Trigger: GTCCCCCATGCTCATCTCTGGCATCCGCTGCCTGCACTTTGCACCTCCCGAGTTTCTTTTGGGTAAGTCACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177133.8
3UTR GCA 72 bp AGGCCGATTTCATGCACCAGCTTCCTCAGCTGCTGCTaGGTCTCGTGCATACACTGCACCTATCACCAGAGC +
Preference number: 3 (lower is better)
Translates to: RPISCTSFLSCC*VSCIHCTYHQS
Trigger: GCTCTGGTGATAGGTGCAGTGTATGCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGAAATCGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176312.8
3UTR CCA 72 bp ACAGCCAGGATCCGGTCCAGCCGCTCTCTGGTCACGTaGTCATACGTTGTCTTCTCTATCAGCCGTCCATCT +
Preference number: 3 (lower is better)
Translates to: TARIRSSRSLVT*SYVVFSISRPS
Trigger: AGATGGACGGCTGATAGAGAAGACAACGTATGACCACGTGACCAGAGAGCGGCTGGACCGGATCCTGGCTGT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177133.8
3UTR CCA 72 bp CTTGGATCACAGCCAGGATCCGGTCCAGCCGCTCTCTaGTCACGTGGTCATACGTTGTCTTCTCTATCAGCC +
Preference number: 3 (lower is better)
Translates to: LGSQPGSGPAAL*SRGHTLSSLSA
Trigger: GGCTGATAGAGAAGACAACGTATGACCACGTGACCAGAGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177133.8
3UTR CCA 72 bp AGGTCCAGGTTGGAGTACATCACCAGAGCTTTTTGGTaGGAGCCTTGGATCACAGCCAGGATCCGGTCCAGC +
Preference number: 3 (lower is better)
Translates to: RSRLEYITRAFW*EPWITARIRSS
Trigger: GCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATGTACTCCAACCTGGACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
3UTR CCA 72 bp GCCTGGATAGCATCCTGGATGTTGTGTAGGTCCCACTaGGTTCTCAGGAGGGCATCATCCAGGCCGAAGAAG +
Preference number: 3 (lower is better)
Translates to: AWIASWMLCRSH*VLRRASSRPKK
Trigger: CTTCTTCGGCCTGGATGATGCCCTCCTGAGAACCCAGTGGGACCTACACAACATCCAGGATGCTATCCAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
3UTR CCA 72 bp CGTGCATACACTGCACCTATCACCAGAGCTTTTTGGTaGGAGCCTTGGATCACAGCCAGGATCCGGTCCAGC +
Preference number: 3 (lower is better)
Translates to: RAYTAPITRAFW*EPWITARIRSS
Trigger: GCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATAGGTGCAGTGTATGCACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176312.8
3UTR TCA 72 bp CTTCTCTGCACCACGCCTTCCACCGGCACCACTGAGTaGACACCATCCCTTGCTGTCCTGTTAGTGTTCACA +
Preference number: 3 (lower is better)
Translates to: LLCTTPSTGTTE*TPSLAVLLVFT
Trigger: TGTGAACACTAACAGGACAGCAAGGGATGGTGTTCACTCAGTGGTGCCGGTGGAAGGCGTGGTGCAGAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR TCA 72 bp AACAGCTTTCCAACTCCAAAGTGGAGCTTGGGTCCTTaGGACCCCAAGGTTGCCCAGTGCTGGGGAGCTGAT +
Preference number: 3 (lower is better)
Translates to: NSFPTPKWSLGP*DPKVAQCWGAD
Trigger: ATCAGCTCCCCAGCACTGGGCAACCTTGGGGTCTCAAGGACCCAAGCTCCACTTTGGAGTTGGAAAGCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR GCA 72 bp TCATGCACCAGCTTCCTCAGCTGCTGCTGCGTCTCGTaGATACACTGCACCTCCAAAAGAAACTCGGGAGGT +
Preference number: 3 (lower is better)
Translates to: SCTSFLSCCCVS*IHCTSKRNSGG
Trigger: ACCTCCCGAGTTTCTTTTGGAGGTGCAGTGTATGCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR CCA 72 bp TTCAGGTCCAGGTTGGAGTACATCACCAGAGCTTTTTaGTGGGAGCCTTGGATCACAGCCAGGATCCGGTCC +
Preference number: 3 (lower is better)
Translates to: FRSRLEYITRAF*WEPWITARIRS
Trigger: GGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATGTACTCCAACCTGGACCTGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
3UTR CCA 72 bp TCTCGTGCATACACTGCACCTATCACCAGAGCTTTTTaGTGGGAGCCTTGGATCACAGCCAGGATCCGGTCC +
Preference number: 3 (lower is better)
Translates to: SRAYTAPITRAF*WEPWITARIRS
Trigger: GGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATAGGTGCAGTGTATGCACGAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176312.8
3UTR-3UTR CAA 90 bp TTAAGCCCAGCCACAGGGCTCTTACATCCTTTCCTAGCCTCCATGATGCACCAGTTTTTGGTGGGAGCCTaGGATCACAGCCAGGATCCG +
Preference number: 3 (lower is better)
Translates to: LSPATGLLHPFLASMMHQFLVGA*DHSQDP
Trigger: CGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAA...CTGGTGCATCATGGAGGCTAGGAAAGGATGTAAGAGCCCTGTGGCTGGGCTTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR TCA 72 bp ATGTCTTCTCTGCACCACGCCTTCCACCGGCACCACTaGGTGAACACCATCCCTTGCTGTCCTGTTAGTGTT +
Preference number: 3 (lower is better)
Translates to: MSSLHHAFHRHH*VNTIPCCPVSV
Trigger: AACACTAACAGGACAGCAAGGGATGGTGTTCACTCAGTGGTGCCGGTGGAAGGCGTGGTGCAGAGAAGACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR TCA 72 bp CTCTCCATCTGGTTGCTACCTGGCCCTTTACTGCCCTaGACAGCTTTCCAACTCCAAAGTGGAGCTTGGGTC +
Preference number: 3 (lower is better)
Translates to: LSIWLLPGPLLP*TAFQLQSGAWV
Trigger: GACCCAAGCTCCACTTTGGAGTTGGAAAGCTGTTCAGGGCAGTAAAGGGCCAGGTAGCAACCAGATGGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR GCA 72 bp AGGCCGATTTCATGCACCAGCTTCCTCAGCTGCTGCTaGGTCTCGTGCATACACTGCACCTCCAAAAGAAAC +
Preference number: 3 (lower is better)
Translates to: RPISCTSFLSCC*VSCIHCTSKRN
Trigger: GTTTCTTTTGGAGGTGCAGTGTATGCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGAAATCGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR GCA 72 bp TCATGCACCAGCTTCCTCAGCTGCTGCTGCGTCTCGTaGATACACTGCACCTATCACCAGAGCTTTTTGGTG +
Preference number: 3 (lower is better)
Translates to: SCTSFLSCCCVS*IHCTYHQSFLV
Trigger: CACCAAAAAGCTCTGGTGATAGGTGCAGTGTATGCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176312.8
3UTR CCA 72 bp TGGCTGGCCCAGGCAGAACATGGCAGGTGGCGTCTCTaGGTTCTTGGCAAGGAAGTAGATGAAATAAACCCA +
Preference number: 3 (lower is better)
Translates to: WLAQAEHGRWRL*VLGKEVDEINP
Trigger: TGGGTTTATTTCATCTACTTCCTTGCCAAGAACCCAGAGACGCCACCTGCCATGTTCTGCCTGGGCCAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR CCA 72 bp AATGTGGCGGCATCCCACATGCTGCAGTGGGTAAGTTaGTTTCCAGTGGACTTGAAGATGCCAGAATGGGTG +
Preference number: 3 (lower is better)
Translates to: NVAASHMLQWVS*FPVDLKMPEWV
Trigger: CACCCATTCTGGCATCTTCAAGTCCACTGGAAACCAACTTACCCACTGCAGCATGTGGGATGCCGCCACATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
3UTR CCA 72 bp GTGAAGAGCCTGTTTGCTCTCCATCTGGTTGCTACCTaGCCCTTTACTGCCCTGAACAGCTTTCCAACTCCA +
Preference number: 3 (lower is better)
Translates to: VKSLFALHLVAT*PFTALNSFPTP
Trigger: TGGAGTTGGAAAGCTGTTCAGGGCAGTAAAGGGCCAGGTAGCAACCAGATGGAGAGCAAACAGGCTCTTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR CCA 72 bp CAACCTCCCGGCAGGGATGGAAGGGGTGTTGAGGTTTaGTCTGTTATGTGTCGTAATGCTAAATACTGGCCC +
Preference number: 3 (lower is better)
Translates to: QPPGRDGRGVEV*SVMCRNAKYWP
Trigger: GGGCCAGTATTTAGCATTACGACACATAACAGACCAAACCTCAACACCCCTTCCATCCCTGCCGGGAGGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR-3UTR CAA 90 bp TTAAGCCCAGCCACAGGGCTCTTACATCCTTTCCTAGCCTCCATGATGCACCAGATAGCATCCTGGATGTaGTGTAGGTCCCACTGGGTT +
Preference number: 3 (lower is better)
Translates to: LSPATGLLHPFLASMMHQIASWM*CRSHWV
Trigger: AACCCAGTGGGACCTACACAACATCCAGGATGCTAT...CTGGTGCATCATGGAGGCTAGGAAAGGATGTAAGAGCCCTGTGGCTGGGCTTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR-3UTR CAA 90 bp CTGTATTTTATAAACCCGATGTCTTCTCTGCACCACGCCTTCCACCGGCACCACAGGACTAGTGGTCCATaGTCAGCATCTTCTTGGTGG +
Preference number: 3 (lower is better)
Translates to: LYFINPMSSLHHAFHRHHRTSGP*SASSWW
Trigger: CCACCAAGAAGATGCTGACAATGGACCACTAGTCCT...GTGGTGCCGGTGGAAGGCGTGGTGCAGAGAAGACATCGGGTTTATAAAATACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR TCA 72 bp TCTCATTACTCCTGCGGAGTGACCAGTTCTGACCTGTaGAGAGCCTGTTTGCTCTCCATCTGGTTGCTACCT +
Preference number: 3 (lower is better)
Translates to: SHYSCGVTSSDL*RACLLSIWLLP
Trigger: AGGTAGCAACCAGATGGAGAGCAAACAGGCTCTTCACAGGTCAGAACTGGTCACTCCGCAGGAGTAATGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR TCA 72 bp GAAAAGCTGAACACTGCAAGTAGCCCAGGCTGGCCTTaGACTCACGATTTTCCTTTCTACCTCTGGAGGGCT +
Preference number: 3 (lower is better)
Translates to: EKLNTASSPGWP*THDFPFYLWRA
Trigger: AGCCCTCCAGAGGTAGAAAGGAAAATCGTGAGTTCAAGGCCAGCCTGGGCTACTTGCAGTGTTCAGCTTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR CCA 72 bp AATGGCCCCATACCCATGCACTTGCCCTACACTAACTaGTCTCAGGGACTTACAAAGATAGCGGACTTGAGG +
Preference number: 3 (lower is better)
Translates to: NGPIPMHLPYTN*SQGLTKIADLR
Trigger: CCTCAAGTCCGCTATCTTTGTAAGTCCCTGAGACCAGTTAGTGTAGGGCAAGTGCATGGGTATGGGGCCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR CCA 72 bp ACACCACACTTGGTGACAGCATATGAAGAACAGACCTaGAAACCTCTCCTAACACTGGAAGGTGCTGCGCAG +
Preference number: 3 (lower is better)
Translates to: TPHLVTAYEEQT*KPLLTLEGAAQ
Trigger: CTGCGCAGCACCTTCCAGTGTTAGGAGAGGTTTCCAGGTCTGTTCTTCATATGCTGTCACCAAGTGTGGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR-3UTR CAA 90 bp AAGTGTTCACACTGCAGACACCAACAATCATCAGCCTGTAAGTGTTCACACTGCCATGGCCACACCTGCTaGCCTCTGCAGTTAGTCTGT +
Preference number: 3 (lower is better)
Translates to: KCSHCRHQQSSACKCSHCHGHTC*PLQLVC
Trigger: ACAGACTAACTGCAGAGGCAAGCAGGTGTGGCCATG...GCAGTGTGAACACTTACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR CAA 90 bp CTTGTTCAGACTGGCCTTAAACTCAGAGCCATCCTCCTGGCTCAGCTGAGTAGTATTGTCAGCATCTTCTaGGTGGCTCACAACTGCCTT +
Preference number: 3 (lower is better)
Translates to: LVQTGLKLRAILLAQLSSIVSIF*VAHNCL
Trigger: AAGGCAGTTGTGAGCCACCAAGAAGATGCTGACAAT...ACTACTCAGCTGAGCCAGGAGGATGGCTCTGAGTTTAAGGCCAGTCTGAACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR-3UTR CAA 90 bp TTCTGGGAAGTATTTCCTGAGCACAGAGAAGCTCTCCAAGAAGGCATATGCCCACGTGATAGGCAGGTCTaGTTCAATCCTGGGAAGCTG +
Preference number: 3 (lower is better)
Translates to: FWEVFPEHREALQEGICPRDRQV*FNPGKL
Trigger: CAGCTTCCCAGGATTGAACAAGACCTGCCTATCACG...TGGGCATATGCCTTCTTGGAGAGCTTCTCTGTGCTCAGGAAATACTTCCCAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
3UTR TCA 72 bp CATGCTGCTGAGGACACCACACTTGGTGACAGCATATaGAGAACAGACCTGGAAACCTCTCCTAACACTGGA +
Preference number: 3 (lower is better)
Translates to: HAAEDTTLGDSI*RTDLETSPNTG
Trigger: TCCAGTGTTAGGAGAGGTTTCCAGGTCTGTTCTTCATATGCTGTCACCAAGTGTGGTGTCCTCAGCAGCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR CCA 72 bp AGGCTTCTTGCATGTGCAAAGGCAGTGCCCTTTATCTaGGAACTAAGTAATCTAAGGCATGCTGGAAACCCC +
Preference number: 3 (lower is better)
Translates to: RLLACAKAVPFI*ELSNLRHAGNP
Trigger: GGGGTTTCCAGCATGCCTTAGATTACTTAGTTCCCAGATAAAGGGCACTGCCTTTGCACATGCAAGAAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR CCA 72 bp GAGGTTTGGTCTGTTATGTGTCGTAATGCTAAATACTaGCCCCCAAGGTCTGGTTGCCTCAGGAAGAGAAGA +
Preference number: 3 (lower is better)
Translates to: EVWSVMCRNAKY*PPRSGCLRKRR
Trigger: TCTTCTCTTCCTGAGGCAACCAGACCTTGGGGGCCAGTATTTAGCATTACGACACATAACAGACCAAACCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR GCA 72 bp GGCAAGGAAGTAGATGAAATAAACCCAGAGGCTTCTTaGATGTGCAAAGGCAGTGCCCTTTATCTGGGAACT +
Preference number: 3 (lower is better)
Translates to: GKEVDEINPEAS*MCKGSALYLGT
Trigger: AGTTCCCAGATAAAGGGCACTGCCTTTGCACATGCAAGAAGCCTCTGGGTTTATTTCATCTACTTCCTTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR GCA 72 bp AGGTCTGGTTGCCTCAGGAAGAGAAGATCTTCAATGTaGACCAAGTCTATGGAACCTTGTCCCCAAGTTATC +
Preference number: 3 (lower is better)
Translates to: RSGCLRKRRSSM*TKSMEPCPQVI
Trigger: GATAACTTGGGGACAAGGTTCCATAGACTTGGTGCACATTGAAGATCTTCTCTTCCTGAGGCAACCAGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR CCA 72 bp GTAAGTTGGTTTCCAGTGGACTTGAAGATGCCAGAATaGGTGTTTGTGGCTTCCTTTAACGTGATAGGCAGG +
Preference number: 3 (lower is better)
Translates to: VSWFPVDLKMPE*VFVASFNVIGR
Trigger: CCTGCCTATCACGTTAAAGGAAGCCACAAACACCCATTCTGGCATCTTCAAGTCCACTGGAAACCAACTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
3UTR GCA 72 bp GCACACACTTTAATCCTAACACTCAGGAGGCAAAGGTaGTCAGAGCTCAAGGTCAGCATAATCTACAAAGTG +
Preference number: 3 (lower is better)
Translates to: AHTLILTLRRQR*SELKVSIIYKV
Trigger: CACTTTGTAGATTATGCTGACCTTGAGCTCTGAGCACCTTTGCCTCCTGAGTGTTAGGATTAAAGTGTGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
3UTR TCA 72 bp TCCACCACCCAGGTGCTAATTACAGGTTTGCAGGATTaGCTGGCAGGATTAAATACTGACACATACCACAAA +
Preference number: 3 (lower is better)
Translates to: STTQVLITGLQD*LAGLNTDTYHK
Trigger: TTTGTGGTATGTGTCAGTATTTAATCCTGCCAGTCAATCCTGCAAACCTGTAATTAGCACCTGGGTGGTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR GCA 72 bp AGACACCAACAATCATCAGCCTGTAAGTGTTCACACTaGAGACACCAACAATCATCAGCCTGTAAGTGTTCA +
Preference number: 3 (lower is better)
Translates to: RHQQSSACKCSH*RHQQSSACKCS
Trigger: TGAACACTTACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTTACAGGCTGATGATTGTTGGTGTCT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR TCA 72 bp TACAGGTTTGCAGGATTGACTGGCAGGATTAAATACTaGCACATACCACAAAGTACTCCAGGAGACTTGTTC +
Preference number: 3 (lower is better)
Translates to: YRFAGLTGRIKY*HIPQSTPGDLF
Trigger: GAACAAGTCTCCTGGAGTACTTTGTGGTATGTGTCAGTATTTAATCCTGCCAGTCAATCCTGCAAACCTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
3UTR CAA 72 bp ATCCAGGCCGAAGAAGCCATCCCGAGTCCGCCGCACTaGCGTGCAGACAGCGCTGGTCTTCAGCTCCAGGCC +
Preference number: 4 (lower is better)
Translates to: IQAEEAIPSPPH*RADSAGLQLQA
Trigger: GGCCTGGAGCTGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCGGCCTGGAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR CCA 90 bp CCAGGCCGAAGAAGCCATCCCGAGTCCGCCGCACTTGCGTGCAGACAGCGCTGGGGTCCAGCCGCTCTCTaGTCACGTGGTCATACGTTG +
Preference number: 4 (lower is better)
Translates to: PGRRSHPESAALACRQRWGPAAL*SRGHTL
Trigger: CAACGTATGACCACGTGACCAGAGAGCGGCTGGACC...CCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCGGCCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177467.8
CDS-3UTR CCA 90 bp GGAGGGCATCATCCAGGCCGAAGAAGCCATCCCGAGTCCGCCGCACTTGCGTGCAGCACACCAGAAGCCTaGACATCCAAGCGATGTCCC +
Preference number: 4 (lower is better)
Translates to: GGHHPGRRSHPESAALACSTPEA*TSKRCP
Trigger: GGGACATCGCTTGGATGTCCAGGCTTCTGGTGTGCT...GCACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCGGCCTGGATGATGCCCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR TCA 90 bp CGAAGAAGCCATCCCGAGTCCGCCGCACTTGCGTGCAGACAGCGCTGGTCTTCAAAGAAGCGAACACGCTaGTCAGGAGCAGGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: RRSHPESAALACRQRWSSKKRTR*SGAGGC
Trigger: GCAGCCTCCTGCTCCTGATCAGCGTGTTCGCTTCTT...TGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR CCA 90 bp AGGAGGGCATCATCCAGGCCGAAGAAGCCATCCCGAGTCCGCCGCACTTGCGTGGGAGCAGGAGGCTGCTaGGCATTGAGACCTTTAAGC +
Preference number: 4 (lower is better)
Translates to: RRASSRPKKPSRVRRTCVGAGGC*ALRPLS
Trigger: GCTTAAAGGTCTCAATGCCCAGCAGCCTCCTGCTCC...CACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCGGCCTGGATGATGCCCTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR CCA 90 bp AAGCCATCCCGAGTCCGCCGCACTTGCGTGCAGACAGCGCTGGTCTTCAGCTCCGGAGCAGGAGGCTGCTaGGCATTGAGACCTTTAAGC +
Preference number: 4 (lower is better)
Translates to: KPSRVRRTCVQTALVFSSGAGGC*ALRPLS
Trigger: GCTTAAAGGTCTCAATGCCCAGCAGCCTCCTGCTCC...GGAGCTGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR CCA 90 bp GTGGGAGCCTTGGATCACAGCCAGGATCCGGTCCAGCCGCTCTCTGGTCACGTGCCACGTACAAGTCTGTaGGTGGTGAGGGAGGGTACA +
Preference number: 4 (lower is better)
Translates to: VGALDHSQDPVQPLSGHVPRTSL*VVREGT
Trigger: TGTACCCTCCCTCACCACCCACAGACTTGTACGTGG...CACGTGACCAGAGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177133.8
CDS-3UTR CCA 90 bp AGCCATCCCGAGTCCGCCGCACTTGCGTGCAGACAGCGCTGGTCTTCAGCTCCAAGCACACCAGAAGCCTaGACATCCAAGCGATGTCCC +
Preference number: 4 (lower is better)
Translates to: SHPESAALACRQRWSSAPSTPEA*TSKRCP
Trigger: GGGACATCGCTTGGATGTCCAGGCTTCTGGTGTGCT...TGGAGCTGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
3UTR CAA 72 bp ACCCGGGGAGCTGCCGCCTGGATAGCATCCTGGATGTaGTGTAGGTCCCACTGGGTTCTCAGGAGGGCATCA +
Preference number: 4 (lower is better)
Translates to: TRGAAAWIASWM*CRSHWVLRRAS
Trigger: TGATGCCCTCCTGAGAACCCAGTGGGACCTACACAACATCCAGGATGCTATCCAGGCGGCAGCTCCCCGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
3UTR CAA 72 bp CTCCAAAGTGGAGCTTGGGTCCTTGAGACCCCAAGGTaGCCCAGTGCTGGGGAGCTGATGGTGGCCCAGCTT +
Preference number: 4 (lower is better)
Translates to: LQSGAWVLETPR*PSAGELMVAQL
Trigger: AAGCTGGGCCACCATCAGCTCCCCAGCACTGGGCAACCTTGGGGTCTCAAGGACCCAAGCTCCACTTTGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
CDS-3UTR CCA 90 bp GTTCTCAGGAGGGCATCATCCAGGCCGAAGAAGCCATCCCGAGTCCGCCGCACTTTTTGGTGGGAGCCTTaGATCACAGCCAGGATCCGG +
Preference number: 4 (lower is better)
Translates to: VLRRASSRPKKPSRVRRTFWWEP*ITARIR
Trigger: CCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAA...AGTGCGGCGGACTCGGGATGGCTTCTTCGGCCTGGATGATGCCCTCCTGAGAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177467.8
3UTR CAA 72 bp AAAATGCCCACAGAGGAAGGCCGTGCTCCCTCCAGGTaGCCTAATGTGGCGGCATCCCACATGCTGCAGTGG +
Preference number: 4 (lower is better)
Translates to: KMPTEEGRAPSR*PNVAASHMLQW
Trigger: CCACTGCAGCATGTGGGATGCCGCCACATTAGGCAACCTGGAGGGAGCACGGCCTTCCTCTGTGGGCATTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR TCA 90 bp CCAGGCCGAAGAAGCCATCCCGAGTCCGCCGCACTTGCGTGCAGACAGCGCTGGGTACATTGGTGGCTCTaGGAGTCAACTTCTTCTCTT +
Preference number: 4 (lower is better)
Translates to: PGRRSHPESAALACRQRWVHWWL*ESTSSL
Trigger: AAGAGAAGAAGTTGACTCTCAGAGCCACCAATGTAC...CCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCGGCCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR GCA 90 bp GTTCTCAGGAGGGCATCATCCAGGCCGAAGAAGCCATCCCGAGTCCGCCGCACTTCAGGAGCAGGAGGCTaGTGGGCATTGAGACCTTTA +
Preference number: 4 (lower is better)
Translates to: VLRRASSRPKKPSRVRRTSGAGG*WALRPL
Trigger: TAAAGGTCTCAATGCCCAGCAGCCTCCTGCTCCTGA...AGTGCGGCGGACTCGGGATGGCTTCTTCGGCCTGGATGATGCCCTCCTGAGAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR CCA 90 bp GGCAGGTCTTGTTCAATCCTGGGAAGCTGGGGAGCACGGAGCTGTGAGCTCACGAGCACACCAGAAGCCTaGACATCCAAGCGATGTCCC +
Preference number: 4 (lower is better)
Translates to: GRSCSILGSWGARSCELTSTPEA*TSKRCP
Trigger: GGGACATCGCTTGGATGTCCAGGCTTCTGGTGTGCT...CGTGAGCTCACAGCTCCGTGCTCCCCAGCTTCCCAGGATTGAACAAGACCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR TCA 90 bp TGTTGTGTAGGTCCCACTGGGTTCTCAGGAGGGCATCATCCAGGCCGAAGAAGCAAGAAGCGAACACGCTaGTCAGGAGCAGGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: CCVGPTGFSGGHHPGRRSKKRTR*SGAGGC
Trigger: GCAGCCTCCTGCTCCTGATCAGCGTGTTCGCTTCTT...GCTTCTTCGGCCTGGATGATGCCCTCCTGAGAACCCAGTGGGACCTACACAACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR TCA 90 bp AAAGTGCAGGCAGCGGATGCCAGAGATGAGCATGGGGGACTTGTTCATGGGCCTAAGAAGCGAACACGCTaGTCAGGAGCAGGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: KVQAADARDEHGGLVHGPKKRTR*SGAGGC
Trigger: GCAGCCTCCTGCTCCTGATCAGCGTGTTCGCTTCTT...AGGCCCATGAACAAGTCCCCCATGCTCATCTCTGGCATCCGCTGCCTGCACTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
CDS-3UTR TCA 90 bp TTGTGTAGGTCCCACTGGGTTCTCAGGAGGGCATCATCCAGGCCGAAGAAGCCACAAGTCTGTGGGTGGTaGGGGAGGGTACATTGGTGG +
Preference number: 4 (lower is better)
Translates to: LCRSHWVLRRASSRPKKPQVCGW*GRVHWW
Trigger: CCACCAATGTACCCTCCCTCACCACCCACAGACTTG...TGGCTTCTTCGGCCTGGATGATGCCCTCCTGAGAACCCAGTGGGACCTACACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR CCA 90 bp AAATGCCCACAGAGGAAGGCCGTGCTCCCTCCAGGTTGCCTAATGTGGCGGCATGGAGCAGGAGGCTGCTaGGCATTGAGACCTTTAAGC +
Preference number: 4 (lower is better)
Translates to: KCPQRKAVLPPGCLMWRHGAGGC*ALRPLS
Trigger: GCTTAAAGGTCTCAATGCCCAGCAGCCTCCTGCTCC...ATGCCGCCACATTAGGCAACCTGGAGGGAGCACGGCCTTCCTCTGTGGGCATTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR CCA 90 bp CAGGCAGCGGATGCCAGAGATGAGCATGGGGGACTTGTTCATGGGCCTGATCACAGCACACCAGAAGCCTaGACATCCAAGCGATGTCCC +
Preference number: 4 (lower is better)
Translates to: QAADARDEHGGLVHGPDHSTPEA*TSKRCP
Trigger: GGGACATCGCTTGGATGTCCAGGCTTCTGGTGTGCT...GTGATCAGGCCCATGAACAAGTCCCCCATGCTCATCTCTGGCATCCGCTGCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
CDS-3UTR CCA 90 bp GGAGCTGCCGCCTGGATAGCATCCTGGATGTTGTGTAGGTCCCACTGGGTTCTCAGCACACCAGAAGCCTaGACATCCAAGCGATGTCCC +
Preference number: 4 (lower is better)
Translates to: GAAAWIASWMLCRSHWVLSTPEA*TSKRCP
Trigger: GGGACATCGCTTGGATGTCCAGGCTTCTGGTGTGCT...GAGAACCCAGTGGGACCTACACAACATCCAGGATGCTATCCAGGCGGCAGCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR CCA 90 bp GTAGGTCCCACTGGGTTCTCAGGAGGGCATCATCCAGGCCGAAGAAGCCATCCCACCAGAGCTTTTTGGTaGGAGCCTTGGATCACAGCC +
Preference number: 4 (lower is better)
Translates to: VGPTGFSGGHHPGRRSHPTRAFW*EPWITA
Trigger: GGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGT...GGGATGGCTTCTTCGGCCTGGATGATGCCCTCCTGAGAACCCAGTGGGACCTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177467.8
CDS-3UTR TCA 90 bp CCTAATGTGGCGGCATCCCACATGCTGCAGTGGGTAAGTTGGTTTCCAGTGGACCAAGTCTGTGGGTGGTaGGGGAGGGTACATTGGTGG +
Preference number: 4 (lower is better)
Translates to: PNVAASHMLQWVSWFPVDQVCGW*GRVHWW
Trigger: CCACCAATGTACCCTCCCTCACCACCCACAGACTTG...GTCCACTGGAAACCAACTTACCCACTGCAGCATGTGGGATGCCGCCACATTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR TCA 90 bp ATTTCATGCACCAGCTTCCTCAGCTGCTGCTGCGTCTCGTGCATACACTGCACCCAAGTCTGTGGGTGGTaGGGGAGGGTACATTGGTGG +
Preference number: 4 (lower is better)
Translates to: ISCTSFLSCCCVSCIHCTQVCGW*GRVHWW
Trigger: CCACCAATGTACCCTCCCTCACCACCCACAGACTTG...GGTGCAGTGTATGCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGAAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
CDS-3UTR TCA 90 bp CTGTATTTTATAAACCCGATGTCTTCTCTGCACCACGCCTTCCACCGGCACCACCCAGTGCTGGGGAGCTaGTGGTGGCCCAGCTTTAGG +
Preference number: 4 (lower is better)
Translates to: LYFINPMSSLHHAFHRHHPVLGS*WWPSFR
Trigger: CCTAAAGCTGGGCCACCATCAGCTCCCCAGCACTGG...GTGGTGCCGGTGGAAGGCGTGGTGCAGAGAAGACATCGGGTTTATAAAATACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR GCA 90 bp GACAGCGCTGGTCTTCAGCTCCAGGCCGATTTCATGCACCAGCTTCCTCAGCTGTCAGGAGCAGGAGGCTaGTGGGCATTGAGACCTTTA +
Preference number: 4 (lower is better)
Translates to: DSAGLQLQADFMHQLPQLSGAGG*WALRPL
Trigger: TAAAGGTCTCAATGCCCAGCAGCCTCCTGCTCCTGA...CAGCTGAGGAAGCTGGTGCATGAAATCGGCCTGGAGCTGAAGACCAGCGCTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
CDS-3UTR CCA 90 bp CTTGTTCAATCCTGGGAAGCTGGGGAGCACGGAGCTGTGAGCTCACGGCAGCATACCAGAGCTTTTTGGTaGGAGCCTTGGATCACAGCC +
Preference number: 4 (lower is better)
Translates to: LVQSWEAGEHGAVSSRQHTRAFW*EPWITA
Trigger: GGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGT...ATGCTGCCGTGAGCTCACAGCTCCGTGCTCCCCAGCTTCCCAGGATTGAACAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR TCA 90 bp GCATCTTCTTGGTGGCTCACAACTGCCTTTAAGCCCAGCCACAGGGCTCTTACAAAGAAGCGAACACGCTaGTCAGGAGCAGGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: ASSWWLTTAFKPSHRALTKKRTR*SGAGGC
Trigger: GCAGCCTCCTGCTCCTGATCAGCGTGTTCGCTTCTT...TGTAAGAGCCCTGTGGCTGGGCTTAAAGGCAGTTGTGAGCCACCAAGAAGATGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
CDS-3UTR TCA 90 bp AAGAAGCCATCCCGAGTCCGCCGCACTTGCGTGCAGACAGCGCTGGTCTTCAGCGTACATTGGTGGCTCTaGGAGTCAACTTCTTCTCTT +
Preference number: 4 (lower is better)
Translates to: KKPSRVRRTCVQTALVFSVHWWL*ESTSSL
Trigger: AAGAGAAGAAGTTGACTCTCAGAGCCACCAATGTAC...GCTGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCTTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR TCA 90 bp TTAAGCCCAGCCACAGGGCTCTTACATCCTTTCCTAGCCTCCATGATGCACCAGCAAGTCTGTGGGTGGTaGGGGAGGGTACATTGGTGG +
Preference number: 4 (lower is better)
Translates to: LSPATGLLHPFLASMMHQQVCGW*GRVHWW
Trigger: CCACCAATGTACCCTCCCTCACCACCCACAGACTTG...CTGGTGCATCATGGAGGCTAGGAAAGGATGTAAGAGCCCTGTGGCTGGGCTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
CDS-3UTR TCA 90 bp CCTGGGATTTCAGGTCCAGGTTGGAGTACATCACCAGAGCTTTTTGGTGGGAGCCAAGTCTGTGGGTGGTaGGGGAGGGTACATTGGTGG +
Preference number: 4 (lower is better)
Translates to: PGISGPGWSTSPELFGGSQVCGW*GRVHWW
Trigger: CCACCAATGTACCCTCCCTCACCACCCACAGACTTG...GCTCCCACCAAAAAGCTCTGGTGATGTACTCCAACCTGGACCTGAAATCCCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
CDS-3UTR TCA 90 bp ATAGCATCCTGGATGTTGTGTAGGTCCCACTGGGTTCTCAGGAGGGCATCATCCCAAGTCTGTGGGTGGTaGGGGAGGGTACATTGGTGG +
Preference number: 4 (lower is better)
Translates to: IASWMLCRSHWVLRRASSQVCGW*GRVHWW
Trigger: CCACCAATGTACCCTCCCTCACCACCCACAGACTTG...GGATGATGCCCTCCTGAGAACCCAGTGGGACCTACACAACATCCAGGATGCTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR GCA 90 bp CAGCGGATGCCAGAGATGAGCATGGGGGACTTGTTCATGGGCCTGATCACACCTTCAGGAGCAGGAGGCTaGTGGGCATTGAGACCTTTA +
Preference number: 4 (lower is better)
Translates to: QRMPEMSMGDLFMGLITPSGAGG*WALRPL
Trigger: TAAAGGTCTCAATGCCCAGCAGCCTCCTGCTCCTGA...AGGTGTGATCAGGCCCATGAACAAGTCCCCCATGCTCATCTCTGGCATCCGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
CDS-3UTR GCA 90 bp TCTTGGTGGCTCACAACTGCCTTTAAGCCCAGCCACAGGGCTCTTACATCCTTTTCGGGAGGTGCAAAGTaGAGGCAGCGGATGCCAGAG +
Preference number: 4 (lower is better)
Translates to: SWWLTTAFKPSHRALTSFSGGAK*RQRMPE
Trigger: CTCTGGCATCCGCTGCCTGCACTTTGCACCTCCCGA...AAAGGATGTAAGAGCCCTGTGGCTGGGCTTAAAGGCAGTTGTGAGCCACCAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR GCA 90 bp CCATCCCTTGCTGTCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCAGCCCCAAGGTTGCCCAGTaGTGGGGAGCTGATGGTGGC +
Preference number: 4 (lower is better)
Translates to: PSLAVLLVFTLQTPTIISPKVAQ*WGADGG
Trigger: GCCACCATCAGCTCCCCAGCACTGGGCAACCTTGGG...GCTGATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGACAGCAAGGGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CCA 90 bp ACATCACCAGAGCTTTTTGGTGGGAGCCTTGGATCACAGCCAGGATCCGGTCCAGGAGCAGGAGGCTGCTaGGCATTGAGACCTTTAAGC +
Preference number: 4 (lower is better)
Translates to: TSPELFGGSLGSQPGSGPGAGGC*ALRPLS
Trigger: GCTTAAAGGTCTCAATGCCCAGCAGCCTCCTGCTCC...TGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
CDS-3UTR CCA 90 bp CTATCACCAGAGCTTTTTGGTGGGAGCCTTGGATCACAGCCAGGATCCGGTCCACCACGTACAAGTCTGTaGGTGGTGAGGGAGGGTACA +
Preference number: 4 (lower is better)
Translates to: LSPELFGGSLGSQPGSGPPRTSL*VVREGT
Trigger: TGTACCCTCCCTCACCACCCACAGACTTGTACGTGG...TGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176312.8
CDS-3UTR CCA 90 bp ATGTTGTGTAGGTCCCACTGGGTTCTCAGGAGGGCATCATCCAGGCCGAAGAAGCCACGTACAAGTCTGTaGGTGGTGAGGGAGGGTACA +
Preference number: 4 (lower is better)
Translates to: MLCRSHWVLRRASSRPKKPRTSL*VVREGT
Trigger: TGTACCCTCCCTCACCACCCACAGACTTGTACGTGG...CTTCTTCGGCCTGGATGATGCCCTCCTGAGAACCCAGTGGGACCTACACAACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR CCA 90 bp CCTAATGTGGCGGCATCCCACATGCTGCAGTGGGTAAGTTGGTTTCCAGTGGACTTTTGGTGGGAGCCTTaGATCACAGCCAGGATCCGG +
Preference number: 4 (lower is better)
Translates to: PNVAASHMLQWVSWFPVDFWWEP*ITARIR
Trigger: CCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAA...GTCCACTGGAAACCAACTTACCCACTGCAGCATGTGGGATGCCGCCACATTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR CCA 90 bp CTTGTTCAGACTGGCCTTAAACTCAGAGCCATCCTCCTGGCTCAGCTGAGTAGTCGGGGAGCTGCCGCCTaGATAGCATCCTGGATGTTG +
Preference number: 4 (lower is better)
Translates to: LVQTGLKLRAILLAQLSSRGAAA*IASWML
Trigger: CAACATCCAGGATGCTATCCAGGCGGCAGCTCCCCG...ACTACTCAGCTGAGCCAGGAGGATGGCTCTGAGTTTAAGGCCAGTCTGAACAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
3UTR CAA 72 bp GAGCATGGGGGACTTGTTCATGGGCCTGATCACACCTaGCACAGCCATCTCATAGGCCTCCTGGGATTTCAG +
Preference number: 4 (lower is better)
Translates to: EHGGLVHGPDHT*HSHLIGLLGFQ
Trigger: CTGAAATCCCAGGAGGCCTATGAGATGGCTGTGCAAGGTGTGATCAGGCCCATGAACAAGTCCCCCATGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
3UTR CAA 72 bp GTCTCGTGCATACACTGCACCTATCACCAGAGCTTTTaGGTGGGAGCCTTGGATCACAGCCAGGATCCGGTC +
Preference number: 4 (lower is better)
Translates to: VSCIHCTYHQSF*VGALDHSQDPV
Trigger: GACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATAGGTGCAGTGTATGCACGAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176312.8
CDS-3UTR GCA 90 bp TTACATCCTTTCCTAGCCTCCATGATGCACCAGGTGTGGACATACATGCATGTACGAGTCCGCCGCACTTaGGTGCAGACAGCGCTGGTC +
Preference number: 4 (lower is better)
Translates to: LHPFLASMMHQVWTYMHVRVRRT*VQTALV
Trigger: GACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCG...TACATGCATGTATGTCCACACCTGGTGCATCATGGAGGCTAGGAAAGGATGTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CCA 90 bp GCATCTTCTTGGTGGCTCACAACTGCCTTTAAGCCCAGCCACAGGGCTCTTACAGGAGCAGGAGGCTGCTaGGCATTGAGACCTTTAAGC +
Preference number: 4 (lower is better)
Translates to: ASSWWLTTAFKPSHRALTGAGGC*ALRPLS
Trigger: GCTTAAAGGTCTCAATGCCCAGCAGCCTCCTGCTCC...TGTAAGAGCCCTGTGGCTGGGCTTAAAGGCAGTTGTGAGCCACCAAGAAGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
CDS-3UTR CCA 90 bp CAGGTTGGAGTACATCACCAGAGCTTTTTGGTGGGAGCCTTGGATCACAGCCAGCCACGTACAAGTCTGTaGGTGGTGAGGGAGGGTACA +
Preference number: 4 (lower is better)
Translates to: QVGVHHQSFLVGALDHSQPRTSL*VVREGT
Trigger: TGTACCCTCCCTCACCACCCACAGACTTGTACGTGG...CTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATGTACTCCAACCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
3UTR CAA 72 bp TTTCAGGTCCAGGTTGGAGTACATCACCAGAGCTTTTaGGTGGGAGCCTTGGATCACAGCCAGGATCCGGTC +
Preference number: 4 (lower is better)
Translates to: FQVQVGVHHQSF*VGALDHSQDPV
Trigger: GACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATGTACTCCAACCTGGACCTGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
CDS-3UTR TCA 90 bp GCAGGTCTTGTTCAATCCTGGGAAGCTGGGGAGCACGGAGCTGTGAGCTCACGGCTGTGTAATCCTTGGTaGGATGAGCATCATACATGT +
Preference number: 4 (lower is better)
Translates to: AGLVQSWEAGEHGAVSSRLCNPW*DEHHTC
Trigger: ACATGTATGATGCTCATCTCACCAAGGATTACACAG...CCGTGAGCTCACAGCTCCGTGCTCCCCAGCTTCCCAGGATTGAACAAGACCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR TCA 90 bp CTTGTTCAGACTGGCCTTAAACTCAGAGCCATCCTCCTGGCTCAGCTGAGTAGTAGCGGATGCCAGAGATaGGCATGGGGGACTTGTTCA +
Preference number: 4 (lower is better)
Translates to: LVQTGLKLRAILLAQLSSSGCQR*AWGTCS
Trigger: TGAACAAGTCCCCCATGCTCATCTCTGGCATCCGCT...ACTACTCAGCTGAGCCAGGAGGATGGCTCTGAGTTTAAGGCCAGTCTGAACAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR TCA 90 bp TGGGAAGTATTTCCTGAGCACAGAGAAGCTCTCCAAGAAGGCATATGCCCATGTAGGAGGAGACCCGAGTaGGGGCCACATCATCACCAG +
Preference number: 4 (lower is better)
Translates to: WEVFPEHREALQEGICPCRRRPE*GPHHHQ
Trigger: CTGGTGATGATGTGGCCCTCACTCGGGTCTCCTCCT...ACATGGGCATATGCCTTCTTGGAGAGCTTCTCTGTGCTCAGGAAATACTTCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR CCA 90 bp GCATCTTCTTGGTGGCTCACAACTGCCTTTAAGCCCAGCCACAGGGCTCTTACAACCAGAGCTTTTTGGTaGGAGCCTTGGATCACAGCC +
Preference number: 4 (lower is better)
Translates to: ASSWWLTTAFKPSHRALTTRAFW*EPWITA
Trigger: GGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGT...TGTAAGAGCCCTGTGGCTGGGCTTAAAGGCAGTTGTGAGCCACCAAGAAGATGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CCA 90 bp CAGACACCAACAATCATCAGCCTGTTAGTGTTCACACTGCAGACACCAACAATCGCGTGCAGACAGCGCTaGTCTTCAGCTCCAGGCCGA +
Preference number: 4 (lower is better)
Translates to: QTPTIISLLVFTLQTPTIACRQR*SSAPGR
Trigger: TCGGCCTGGAGCTGAAGACCAGCGCTGTCTGCACGC...GATTGTTGGTGTCTGCAGTGTGAACACTAACAGGCTGATGATTGTTGGTGTCTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CCA 90 bp CTTGTTCAGACTGGCCTTAAACTCAGAGCCATCCTCCTGGCTCAGCTGAGTAGTCTCCAAAGTGGAGCTTaGGTCCTTGAGACCCCAAGG +
Preference number: 4 (lower is better)
Translates to: LVQTGLKLRAILLAQLSSLQSGA*VLETPR
Trigger: CCTTGGGGTCTCAAGGACCCAAGCTCCACTTTGGAG...ACTACTCAGCTGAGCCAGGAGGATGGCTCTGAGTTTAAGGCCAGTCTGAACAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR TCA 90 bp CCCGATGTCTTCTCTGCACCACGCCTTCCACCGGCACCACTGAGTGAACACCATCTGTGTAATCCTTGGTaGGATGAGCATCATACATGT +
Preference number: 4 (lower is better)
Translates to: PDVFSAPRLPPAPLSEHHLCNPW*DEHHTC
Trigger: ACATGTATGATGCTCATCTCACCAAGGATTACACAG...ATGGTGTTCACTCAGTGGTGCCGGTGGAAGGCGTGGTGCAGAGAAGACATCGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CCA 90 bp CTTGTTCAGACTGGCCTTAAACTCAGAGCCATCCTCCTGGCTCAGCTGAGTAGTGCCTGGATAGCATCCTaGATGTTGTGTAGGTCCCAC +
Preference number: 4 (lower is better)
Translates to: LVQTGLKLRAILLAQLSSAWIAS*MLCRSH
Trigger: GTGGGACCTACACAACATCCAGGATGCTATCCAGGC...ACTACTCAGCTGAGCCAGGAGGATGGCTCTGAGTTTAAGGCCAGTCTGAACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR TCA 90 bp CCTAATGTGGCGGCATCCCACATGCTGCAGTGGGTAAGTTGGTTTCCAGTGGACGTACATTGGTGGCTCTaGGAGTCAACTTCTTCTCTT +
Preference number: 4 (lower is better)
Translates to: PNVAASHMLQWVSWFPVDVHWWL*ESTSSL
Trigger: AAGAGAAGAAGTTGACTCTCAGAGCCACCAATGTAC...GTCCACTGGAAACCAACTTACCCACTGCAGCATGTGGGATGCCGCCACATTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR TCA 90 bp GTTGCCCAGTGCTGGGGAGCTGATGGTGGCCCAGCTTTAGGCTCAAGTTCTTTTGTACATTGGTGGCTCTaGGAGTCAACTTCTTCTCTT +
Preference number: 4 (lower is better)
Translates to: VAQCWGADGGPALGSSSFVHWWL*ESTSSL
Trigger: AAGAGAAGAAGTTGACTCTCAGAGCCACCAATGTAC...AAAAGAACTTGAGCCTAAAGCTGGGCCACCATCAGCTCCCCAGCACTGGGCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
CDS-3UTR TCA 90 bp TGTTGTGTAGGTCCCACTGGGTTCTCAGGAGGGCATCATCCAGGCCGAAGAAGCCTGTGTAATCCTTGGTaGGATGAGCATCATACATGT +
Preference number: 4 (lower is better)
Translates to: CCVGPTGFSGGHHPGRRSLCNPW*DEHHTC
Trigger: ACATGTATGATGCTCATCTCACCAAGGATTACACAG...GCTTCTTCGGCCTGGATGATGCCCTCCTGAGAACCCAGTGGGACCTACACAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177467.8
CDS-3UTR GCA 90 bp GCATCTTCTTGGTGGCTCACAACTGCCTTTAAGCCCAGCCACAGGGCTCTTACAGTCTCGTGCATACACTaGACCTCCAAAAGAAACTCG +
Preference number: 4 (lower is better)
Translates to: ASSWWLTTAFKPSHRALTVSCIH*TSKRNS
Trigger: CGAGTTTCTTTTGGAGGTGCAGTGTATGCACGAGAC...TGTAAGAGCCCTGTGGCTGGGCTTAAAGGCAGTTGTGAGCCACCAAGAAGATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR GCA 90 bp ACCAACAATCATCAGCCTGTAAGTGTTCACACTGCAGACACCAACAATCATCAGTCCGCCGCACTTGCGTaGAGACAGCGCTGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: TNNHQPVSVHTADTNNHQSAALA*RQRWSS
Trigger: TGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGA...CTGATGATTGTTGGTGTCTGCAGTGTGAACACTTACAGGCTGATGATTGTTGGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CCA 90 bp TTCTGGGAAGTATTTCCTGAGCACAGAGAAGCTCTCCAAGAAGGCATATGCCCACCACGTACAAGTCTGTaGGTGGTGAGGGAGGGTACA +
Preference number: 4 (lower is better)
Translates to: FWEVFPEHREALQEGICPPRTSL*VVREGT
Trigger: TGTACCCTCCCTCACCACCCACAGACTTGTACGTGG...TGGGCATATGCCTTCTTGGAGAGCTTCTCTGTGCTCAGGAAATACTTCCCAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR CCA 90 bp CAGCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCAGCCTGTTAGTGTTGGTCCAGCCGCTCTCTaGTCACGTGGTCATACGTTG +
Preference number: 4 (lower is better)
Translates to: QPVSVHTADTNNHQPVSVGPAAL*SRGHTL
Trigger: CAACGTATGACCACGTGACCAGAGAGCGGCTGGACC...AACACTAACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGCTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CCA 90 bp ATAGCATCCTGGATGTTGTGTAGGTCCCACTGGGTTCTCAGGAGGGCATCATCCATCACCAGAGCTTTTTaGTGGGAGCCTTGGATCACA +
Preference number: 4 (lower is better)
Translates to: IASWMLCRSHWVLRRASSITRAF*WEPWIT
Trigger: TGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGAT...GGATGATGCCCTCCTGAGAACCCAGTGGGACCTACACAACATCCAGGATGCTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177467.8
3UTR CAA 72 bp CAGCCAGTCAACCTCCCGGCAGGGATGGAAGGGGTGTaGAGGTTTGGTCTGTTATGTGTCGTAATGCTAAAT +
Preference number: 4 (lower is better)
Translates to: QPVNLPAGMEGV*RFGLLCVVMLN
Trigger: ATTTAGCATTACGACACATAACAGACCAAACCTCAACACCCCTTCCATCCCTGCCGGGAGGTTGACTGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
CDS-3UTR TCA 90 bp GAAGTATTTCCTGAGCACAGAGAAGCTCTCCAAGAAGGCATATGCCCATGTTTTAAGAAGCGAACACGCTaGTCAGGAGCAGGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: EVFPEHREALQEGICPCFKKRTR*SGAGGC
Trigger: GCAGCCTCCTGCTCCTGATCAGCGTGTTCGCTTCTT...AAAACATGGGCATATGCCTTCTTGGAGAGCTTCTCTGTGCTCAGGAAATACTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR TCA 90 bp ACACCATCCCTTGCTGTCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCACTTGTTCATGGGCCTaGTCACACCTTGCACAGCCA +
Preference number: 4 (lower is better)
Translates to: TPSLAVLLVFTLQTPTIITCSWA*SHLAQP
Trigger: TGGCTGTGCAAGGTGTGATCAGGCCCATGAACAAGT...GATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGACAGCAAGGGATGGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR GCA 90 bp TGGGAAGTATTTCCTGAGCACAGAGAAGCTCTCCAAGAAGGCATATGCCCATGTTCAGGAGCAGGAGGCTaGTGGGCATTGAGACCTTTA +
Preference number: 4 (lower is better)
Translates to: WEVFPEHREALQEGICPCSGAGG*WALRPL
Trigger: TAAAGGTCTCAATGCCCAGCAGCCTCCTGCTCCTGA...ACATGGGCATATGCCTTCTTGGAGAGCTTCTCTGTGCTCAGGAAATACTTCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR GCA 90 bp CTCTTACATCCTTTCCTAGCCTCCATGATGCACCAGGTGTGGACATACATGCATAAGAAACTCGGGAGGTaGAAAGTGCAGGCAGCGGAT +
Preference number: 4 (lower is better)
Translates to: LLHPFLASMMHQVWTYMHKKLGR*KVQAAD
Trigger: ATCCGCTGCCTGCACTTTGCACCTCCCGAGTTTCTT...ATGCATGTATGTCCACACCTGGTGCATCATGGAGGCTAGGAAAGGATGTAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CCA 90 bp GAAGTATTTCCTGAGCACAGAGAAGCTCTCCAAGAAGGCATATGCCCATGTTTTGGTCCAGCCGCTCTCTaGTCACGTGGTCATACGTTG +
Preference number: 4 (lower is better)
Translates to: EVFPEHREALQEGICPCFGPAAL*SRGHTL
Trigger: CAACGTATGACCACGTGACCAGAGAGCGGCTGGACC...AAAACATGGGCATATGCCTTCTTGGAGAGCTTCTCTGTGCTCAGGAAATACTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR CCA 90 bp CAGCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCAGCCTGTTAGTGTTTTTTGGTGGGAGCCTTaGATCACAGCCAGGATCCGG +
Preference number: 4 (lower is better)
Translates to: QPVSVHTADTNNHQPVSVFWWEP*ITARIR
Trigger: CCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAA...AACACTAACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGCTG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR TCA 90 bp ACTCCAGCTTCCTGGGTGACTTACCCAAAAGAAACTCGGGAGGTGCAAAGTGCAGTACATTGGTGGCTCTaGGAGTCAACTTCTTCTCTT +
Preference number: 4 (lower is better)
Translates to: TPASWVTYPKETREVQSAVHWWL*ESTSSL
Trigger: AAGAGAAGAAGTTGACTCTCAGAGCCACCAATGTAC...TGCACTTTGCACCTCCCGAGTTTCTTTTGGGTAAGTCACCCAGGAAGCTGGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177133.8
CDS-3UTR GCA 90 bp TCAGCCTGTAAGTGTTCACACTGCAGACACCAACAATCATCAGCCTGTAAGTGTTCAGGAGCAGGAGGCTaGTGGGCATTGAGACCTTTA +
Preference number: 4 (lower is better)
Translates to: SACKCSHCRHQQSSACKCSGAGG*WALRPL
Trigger: TAAAGGTCTCAATGCCCAGCAGCCTCCTGCTCCTGA...ACACTTACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTTACAGGCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
CDS-3UTR GCA 90 bp ACCAACAATCATCAGCCTGTAAGTGTTCACACTGCAGACACCAACAATCATCAGTCCAGGCCGATTTCATaGACCAGCTTCCTCAGCTGC +
Preference number: 4 (lower is better)
Translates to: TNNHQPVSVHTADTNNHQSRPIS*TSFLSC
Trigger: GCAGCTGAGGAAGCTGGTGCATGAAATCGGCCTGGA...CTGATGATTGTTGGTGTCTGCAGTGTGAACACTTACAGGCTGATGATTGTTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CCA 90 bp AATCATCAGCCTGTAAGTGTTCACACTGCAGACACCAACAATCATCAGCCTGTTCCACGTACAAGTCTGTaGGTGGTGAGGGAGGGTACA +
Preference number: 4 (lower is better)
Translates to: NHQPVSVHTADTNNHQPVPRTSL*VVREGT
Trigger: TGTACCCTCCCTCACCACCCACAGACTTGTACGTGG...AACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTTACAGGCTGATGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
CDS-3UTR CCA 90 bp AATCATCAGCCTGTAAGTGTTCACACTGCAGACACCAACAATCATCAGCCTGTTAGCACACCAGAAGCCTaGACATCCAAGCGATGTCCC +
Preference number: 4 (lower is better)
Translates to: NHQPVSVHTADTNNHQPVSTPEA*TSKRCP
Trigger: GGGACATCGCTTGGATGTCCAGGCTTCTGGTGTGCT...AACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTTACAGGCTGATGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
CDS-3UTR CCA 90 bp ATCCCACATGCTGCAGTGGGTAAGTTGGTTTCCAGTGGACTTGAAGATGCCAGAATCACCAGAGCTTTTTaGTGGGAGCCTTGGATCACA +
Preference number: 4 (lower is better)
Translates to: IPHAAVGKLVSSGLEDARITRAF*WEPWIT
Trigger: TGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGAT...TCTGGCATCTTCAAGTCCACTGGAAACCAACTTACCCACTGCAGCATGTGGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR CCA 90 bp CATCAGCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCAGCCTGTAAGTTTGTGTAGGTCCCACTaGGTTCTCAGGAGGGCATCA +
Preference number: 4 (lower is better)
Translates to: HQPVSVHTADTNNHQPVSLCRSH*VLRRAS
Trigger: TGATGCCCTCCTGAGAACCCAGTGGGACCTACACAA...ACTTACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGCTGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
3UTR CAA 72 bp CACATGCTGCAGTGGGTAAGTTGGTTTCCAGTGGACTaGAAGATGCCAGAATGGGTGTTTGTGGCTTCCTTT +
Preference number: 4 (lower is better)
Translates to: HMLQWVSWFPVD*KMPEWVFVASF
Trigger: AAAGGAAGCCACAAACACCCATTCTGGCATCTTCAAGTCCACTGGAAACCAACTTACCCACTGCAGCATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR TCA 90 bp CCATCCCTTGCTGTCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCAGCGTACATTGGTGGCTCTaGGAGTCAACTTCTTCTCTT +
Preference number: 4 (lower is better)
Translates to: PSLAVLLVFTLQTPTIISVHWWL*ESTSSL
Trigger: AAGAGAAGAAGTTGACTCTCAGAGCCACCAATGTAC...GCTGATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGACAGCAAGGGATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
CDS-3UTR CCA 90 bp CATCAGCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCAGCCTGTAAGTATCACCAGAGCTTTTTaGTGGGAGCCTTGGATCACA +
Preference number: 4 (lower is better)
Translates to: HQPVSVHTADTNNHQPVSITRAF*WEPWIT
Trigger: TGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGAT...ACTTACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGCTGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CAA 90 bp CCAGGCCGAAGAAGCCATCCCGAGTCCGCCGCACTTGCGTGCAGACAGCGCTGGGTGAGGGAGGGTACATaGGTGGCTCTGAGAGTCAAC +
Preference number: 5 (lower is better)
Translates to: PGRRSHPESAALACRQRWVREGT*VALRVN
Trigger: GTTGACTCTCAGAGCCACCAATGTACCCTCCCTCAC...CCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCGGCCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR CAA 90 bp ATCCCGAGTCCGCCGCACTTGCGTGCAGACAGCGCTGGTCTTCAGCTCCAGGCCGGAGGCTGCTGGGCATaGAGACCTTTAAGCAGTTGC +
Preference number: 5 (lower is better)
Translates to: IPSPPHLRADSAGLQLQAGGCWA*RPLSSC
Trigger: GCAACTGCTTAAAGGTCTCAATGCCCAGCAGCCTCC...GGCCTGGAGCTGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS CCA 90 bp CCGAGTGAGGGCCACATCATCACCAGAGCTTTTTGGTGGGAGCCTTaGATCACAGCCAGGATCCGGTCCAGCCGCTCTCTGGTCACGTGG +
Preference number: 5 (lower is better)
Translates to: PSEGHIITRAFWWEP*ITARIRSSRSLVTW
Trigger: CCACGTGACCAGAGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATGATGTGGCCCTCACTCGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS CCA 90 bp GGAGGAGACCCGAGTGAGGGCCACATCATCACCAGAGCTTTTTGGTaGGAGCCTTGGATCACAGCCAGGATCCGGTCCAGCCGCTCTCTG +
Preference number: 5 (lower is better)
Translates to: GGDPSEGHIITRAFW*EPWITARIRSSRSL
Trigger: CAGAGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATGATGTGGCCCTCACTCGGGTCTCCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS CCA 90 bp GAAGGAGGAGACCCGAGTGAGGGCCACATCATCACCAGAGCTTTTTaGTGGGAGCCTTGGATCACAGCCAGGATCCGGTCCAGCCGCTCT +
Preference number: 5 (lower is better)
Translates to: EGGDPSEGHIITRAF*WEPWITARIRSSRS
Trigger: AGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATGATGTGGCCCTCACTCGGGTCTCCTCCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR CAA 90 bp GGTCCCACTGGGTTCTCAGGAGGGCATCATCCAGGCCGAAGAAGCCATCCCGAGGTGAGGGAGGGTACATaGGTGGCTCTGAGAGTCAAC +
Preference number: 5 (lower is better)
Translates to: GPTGFSGGHHPGRRSHPEVREGT*VALRVN
Trigger: GTTGACTCTCAGAGCCACCAATGTACCCTCCCTCAC...CTCGGGATGGCTTCTTCGGCCTGGATGATGCCCTCCTGAGAACCCAGTGGGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR CAA 90 bp GAAGAAGCCATCCCGAGTCCGCCGCACTTGCGTGCAGACAGCGCTGGTCTTCAGAAGTTGTCTGTAGCTTaGCCCAGGAGGCCACGCACT +
Preference number: 5 (lower is better)
Translates to: EEAIPSPPHLRADSAGLQKLSVA*PRRPRT
Trigger: AGTGCGTGGCCTCCTGGGCAAAGCTACAGACAACTT...CTGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCTTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR CAA 90 bp GCCATCCCGAGTCCGCCGCACTTGCGTGCAGACAGCGCTGGTCTTCAGCTCCAGCCATCTTCACAGAAGTaGTCTGTAGCTTTGCCCAGG +
Preference number: 5 (lower is better)
Translates to: AIPSPPHLRADSAGLQLQPSSQK*SVALPR
Trigger: CCTGGGCAAAGCTACAGACAACTTCTGTGAAGATGG...CTGGAGCTGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177467.8
CDS-3UTR CAA 90 bp ACAGAGGAAGGCCGTGCTCCCTCCAGGTTGCCTAATGTGGCGGCATCCCACATGGGAGGCTGCTGGGCATaGAGACCTTTAAGCAGTTGC +
Preference number: 5 (lower is better)
Translates to: TEEGRAPSRLPNVAASHMGGCWA*RPLSSC
Trigger: GCAACTGCTTAAAGGTCTCAATGCCCAGCAGCCTCC...CATGTGGGATGCCGCCACATTAGGCAACCTGGAGGGAGCACGGCCTTCCTCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR CAA 90 bp GGTCTTGTTCAATCCTGGGAAGCTGGGGAGCACGGAGCTGTGAGCTCACGGCAGGTGAGGGAGGGTACATaGGTGGCTCTGAGAGTCAAC +
Preference number: 5 (lower is better)
Translates to: GLVQSWEAGEHGAVSSRQVREGT*VALRVN
Trigger: GTTGACTCTCAGAGCCACCAATGTACCCTCCCTCAC...CTGCCGTGAGCTCACAGCTCCGTGCTCCCCAGCTTCCCAGGATTGAACAAGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR CAA 90 bp GTGCTACTCCTGGTGGAAAGAAGCCACTCGGGGCTGGGCATGCCGCACATGACTGTGAGGGAGGGTACATaGGTGGCTCTGAGAGTCAAC +
Preference number: 5 (lower is better)
Translates to: VLLLVERSHSGLGMPHMTVREGT*VALRVN
Trigger: GTTGACTCTCAGAGCCACCAATGTACCCTCCCTCAC...AGTCATGTGCGGCATGCCCAGCCCCGAGTGGCTTCTTTCCACCAGGAGTAGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177133.8
CDS-3UTR CAA 90 bp TCCCACTGGGTTCTCAGGAGGGCATCATCCAGGCCGAAGAAGCCATCCCGAGTCAAGTTGTCTGTAGCTTaGCCCAGGAGGCCACGCACT +
Preference number: 5 (lower is better)
Translates to: SHWVLRRASSRPKKPSRVKLSVA*PRRPRT
Trigger: AGTGCGTGGCCTCCTGGGCAAAGCTACAGACAACTT...GACTCGGGATGGCTTCTTCGGCCTGGATGATGCCCTCCTGAGAACCCAGTGGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR CAA 90 bp GAGGGCATCATCCAGGCCGAAGAAGCCATCCCGAGTCCGCCGCACTTGCGTGCATATCACCAGAGCTTTTaGGTGGGAGCCTTGGATCAC +
Preference number: 5 (lower is better)
Translates to: EGIIQAEEAIPSPPHLRAYHQSF*VGALDH
Trigger: GTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATA...TGCACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCGGCCTGGATGATGCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177467.8
CDS CCA 90 bp GGTGGGAGCCTTGGATCACAGCCAGGATCCGGTCCAGCCGCTCTCTaGTCACGTGGTCATACGTTGTCTTCTCTATCAGCCGTCCATCTT +
Preference number: 5 (lower is better)
Translates to: GGSLGSQPGSGPAAL*SRGHTLSSLSAVHL
Trigger: AAGATGGACGGCTGATAGAGAAGACAACGTATGACCACGTGACCAGAGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048044.12
ENSMUST00000113807.10
ENSMUST00000177467.8
CDS-3UTR CAA 90 bp GCTGCCGCCTGGATAGCATCCTGGATGTTGTGTAGGTCCCACTGGGTTCTCAGGGGAGGCTGCTGGGCATaGAGACCTTTAAGCAGTTGC +
Preference number: 5 (lower is better)
Translates to: AAAWIASWMLCRSHWVLRGGCWA*RPLSSC
Trigger: GCAACTGCTTAAAGGTCTCAATGCCCAGCAGCCTCC...CCTGAGAACCCAGTGGGACCTACACAACATCCAGGATGCTATCCAGGCGGCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR CAA 90 bp GCTGCCGCCTGGATAGCATCCTGGATGTTGTGTAGGTCCCACTGGGTTCTCAGGGTGAGGGAGGGTACATaGGTGGCTCTGAGAGTCAAC +
Preference number: 5 (lower is better)
Translates to: AAAWIASWMLCRSHWVLRVREGT*VALRVN
Trigger: GTTGACTCTCAGAGCCACCAATGTACCCTCCCTCAC...CCTGAGAACCCAGTGGGACCTACACAACATCCAGGATGCTATCCAGGCGGCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177467.8
CDS-3UTR CAA 90 bp CTTGTTCAATCCTGGGAAGCTGGGGAGCACGGAGCTGTGAGCTCACGGCAGCATAAGTTGTCTGTAGCTTaGCCCAGGAGGCCACGCACT +
Preference number: 5 (lower is better)
Translates to: LVQSWEAGEHGAVSSRQHKLSVA*PRRPRT
Trigger: AGTGCGTGGCCTCCTGGGCAAAGCTACAGACAACTT...ATGCTGCCGTGAGCTCACAGCTCCGTGCTCCCCAGCTTCCCAGGATTGAACAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR CAA 90 bp CAGGCAGCGGATGCCAGAGATGAGCATGGGGGACTTGTTCATGGGCCTGATCACAAGTTGTCTGTAGCTTaGCCCAGGAGGCCACGCACT +
Preference number: 5 (lower is better)
Translates to: QAADARDEHGGLVHGPDHKLSVA*PRRPRT
Trigger: AGTGCGTGGCCTCCTGGGCAAAGCTACAGACAACTT...GTGATCAGGCCCATGAACAAGTCCCCCATGCTCATCTCTGGCATCCGCTGCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
CDS-3UTR CAA 90 bp TGTAGGTCCCACTGGGTTCTCAGGAGGGCATCATCCAGGCCGAAGAAGCCATCCTTTTTGGTGGGAGCCTaGGATCACAGCCAGGATCCG +
Preference number: 5 (lower is better)
Translates to: CRSHWVLRRASSRPKKPSFLVGA*DHSQDP
Trigger: CGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAA...GGATGGCTTCTTCGGCCTGGATGATGCCCTCCTGAGAACCCAGTGGGACCTACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177467.8
CDS-3UTR CAA 90 bp CCATCCCTTGCTGTCCTGTTAGTGTTCACACTGCAGACACCAACAATCATCAGCCCGAGTCCGCCGCACTaGCGTGCAGACAGCGCTGGT +
Preference number: 5 (lower is better)
Translates to: PSLAVLLVFTLQTPTIISPSPPH*RADSAG
Trigger: ACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGG...GCTGATGATTGTTGGTGTCTGCAGTGTGAACACTAACAGGACAGCAAGGGATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CAA 90 bp TGCAAAGTGCAGGCAGCGGATGCCAGAGATGAGCATGGGGGACTTGTTCATGGGGGAGGCTGCTGGGCATaGAGACCTTTAAGCAGTTGC +
Preference number: 5 (lower is better)
Translates to: CKVQAADARDEHGGLVHGGGCWA*RPLSSC
Trigger: GCAACTGCTTAAAGGTCTCAATGCCCAGCAGCCTCC...CCCATGAACAAGTCCCCCATGCTCATCTCTGGCATCCGCTGCCTGCACTTTGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000156846.8
ENSMUST00000177133.8
CDS-3UTR CAA 90 bp CCCGATGTCTTCTCTGCACCACGCCTTCCACCGGCACCACTGAGTGAACACCATCATCACCAGAGCTTTTaGGTGGGAGCCTTGGATCAC +
Preference number: 5 (lower is better)
Translates to: PDVFSAPRLPPAPLSEHHHHQSF*VGALDH
Trigger: GTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATG...ATGGTGTTCACTCAGTGGTGCCGGTGGAAGGCGTGGTGCAGAGAAGACATCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CAA 90 bp CTGTATTTTATAAACCCGATGTCTTCTCTGCACCACGCCTTCCACCGGCACCACCTTGAGACCCCAAGGTaGCCCAGTGCTGGGGAGCTG +
Preference number: 5 (lower is better)
Translates to: LYFINPMSSLHHAFHRHHLETPR*PSAGEL
Trigger: CAGCTCCCCAGCACTGGGCAACCTTGGGGTCTCAAG...GTGGTGCCGGTGGAAGGCGTGGTGCAGAGAAGACATCGGGTTTATAAAATACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CAA 90 bp ACCCAGCAGAACATGACAGACCATGCTGCTGAGGACACCACACTTGGTGACAGCAAGTTGTCTGTAGCTTaGCCCAGGAGGCCACGCACT +
Preference number: 5 (lower is better)
Translates to: TQQNMTDHAAEDTTLGDSKLSVA*PRRPRT
Trigger: AGTGCGTGGCCTCCTGGGCAAAGCTACAGACAACTT...GCTGTCACCAAGTGTGGTGTCCTCAGCAGCATGGTCTGTCATGTTCTGCTGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156846.8
CDS GCA 90 bp CTGGACATCCAAGCGATGTCCCACACCGATCTTCAGGTTTGTGAATaGTGGACCACGTACAAGTCTGTGGGTGGTGAGGGAGGGTACATT +
Preference number: 5 (lower is better)
Translates to: LDIQAMSHTDLQVCE*WTTYKSVGGEGGYI
Trigger: AATGTACCCTCCCTCACCACCCACAGACTTGTACGTGGTCCAGCATTCACAAACCTGAAGATCGGTGTGGGACATCGCTTGGATGTCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000048044.12
ENSMUST00000113807.10
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177133.8
ENSMUST00000177467.8
CDS CCA 90 bp GACATCCAAGCGATGTCCCACACCGATCTTCAGGTTTGTGAATGCTaGACCACGTACAAGTCTGTGGGTGGTGAGGGAGGGTACATTGGT +
Preference number: 5 (lower is better)
Translates to: DIQAMSHTDLQVCEC*TTYKSVGGEGGYIG
Trigger: ACCAATGTACCCTCCCTCACCACCCACAGACTTGTACGTGGTCCAGCATTCACAAACCTGAAGATCGGTGTGGGACATCGCTTGGATGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000048044.12
ENSMUST00000113807.10
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177133.8
ENSMUST00000177467.8
CDS-3UTR CAA 90 bp CTTGTTCAGACTGGCCTTAAACTCAGAGCCATCCTCCTGGCTCAGCTGAGTAGTGGAGGCTGCTGGGCATaGAGACCTTTAAGCAGTTGC +
Preference number: 5 (lower is better)
Translates to: LVQTGLKLRAILLAQLSSGGCWA*RPLSSC
Trigger: GCAACTGCTTAAAGGTCTCAATGCCCAGCAGCCTCC...ACTACTCAGCTGAGCCAGGAGGATGGCTCTGAGTTTAAGGCCAGTCTGAACAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
CDS-3UTR CAA 90 bp TCTTGGTGGCTCACAACTGCCTTTAAGCCCAGCCACAGGGCTCTTACATCCTTTAAGTTGTCTGTAGCTTaGCCCAGGAGGCCACGCACT +
Preference number: 5 (lower is better)
Translates to: SWWLTTAFKPSHRALTSFKLSVA*PRRPRT
Trigger: AGTGCGTGGCCTCCTGGGCAAAGCTACAGACAACTT...AAAGGATGTAAGAGCCCTGTGGCTGGGCTTAAAGGCAGTTGTGAGCCACCAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
CDS CCA 90 bp ACACCGATCTTCAGGTTTGTGAATGCTGGACCACGTACAAGTCTGTaGGTGGTGAGGGAGGGTACATTGGTGGCTCTGAGAGTCAACTTC +
Preference number: 5 (lower is better)
Translates to: TPIFRFVNAGPRTSL*VVREGTLVALRVNF
Trigger: GAAGTTGACTCTCAGAGCCACCAATGTACCCTCCCTCACCACCCACAGACTTGTACGTGGTCCAGCATTCACAAACCTGAAGATCGGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000048044.12
ENSMUST00000113807.10
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177133.8
ENSMUST00000177467.8
CDS-3UTR CAA 90 bp GCATCTTCTTGGTGGCTCACAACTGCCTTTAAGCCCAGCCACAGGGCTCTTACACCATCTTCACAGAAGTaGTCTGTAGCTTTGCCCAGG +
Preference number: 5 (lower is better)
Translates to: ASSWWLTTAFKPSHRALTPSSQK*SVALPR
Trigger: CCTGGGCAAAGCTACAGACAACTTCTGTGAAGATGG...TGTAAGAGCCCTGTGGCTGGGCTTAAAGGCAGTTGTGAGCCACCAAGAAGATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CAA 90 bp ATCCCACATGCTGCAGTGGGTAAGTTGGTTTCCAGTGGACTTGAAGATGCCAGATTTTTGGTGGGAGCCTaGGATCACAGCCAGGATCCG +
Preference number: 5 (lower is better)
Translates to: IPHAAVGKLVSSGLEDARFLVGA*DHSQDP
Trigger: CGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAA...TCTGGCATCTTCAAGTCCACTGGAAACCAACTTACCCACTGCAGCATGTGGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR CAA 90 bp CTCTTACATCCTTTCCTAGCCTCCATGATGCACCAGGTGTGGACATACATGCATTTTTTGGTGGGAGCCTaGGATCACAGCCAGGATCCG +
Preference number: 5 (lower is better)
Translates to: LLHPFLASMMHQVWTYMHFLVGA*DHSQDP
Trigger: CGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAA...ATGCATGTATGTCCACACCTGGTGCATCATGGAGGCTAGGAAAGGATGTAAGAG
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CAA 90 bp AAGTGTTCACACTGCAGACACCAACAATCATCAGCCTGTAAGTGTTCACACTGCGTGAGGGAGGGTACATaGGTGGCTCTGAGAGTCAAC +
Preference number: 5 (lower is better)
Translates to: KCSHCRHQQSSACKCSHCVREGT*VALRVN
Trigger: GTTGACTCTCAGAGCCACCAATGTACCCTCCCTCAC...GCAGTGTGAACACTTACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048044.12
ENSMUST00000156846.8
CDS-3UTR CAA 90 bp TTCTGGGAAGTATTTCCTGAGCACAGAGAAGCTCTCCAAGAAGGCATATGCCCACATCACCAGAGCTTTTaGGTGGGAGCCTTGGATCAC +
Preference number: 5 (lower is better)
Translates to: FWEVFPEHREALQEGICPHHQSF*VGALDH
Trigger: GTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATG...TGGGCATATGCCTTCTTGGAGAGCTTCTCTGTGCTCAGGAAATACTTCCCAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS-3UTR CAA 90 bp ACCAACAATCATCAGCCTGTAAGTGTTCACACTGCAGACACCAACAATCATCAGGGGCCTGATCACACCTaGCACAGCCATCTCATAGGC +
Preference number: 5 (lower is better)
Translates to: TNNHQPVSVHTADTNNHQGPDHT*HSHLIG
Trigger: GCCTATGAGATGGCTGTGCAAGGTGTGATCAGGCCC...CTGATGATTGTTGGTGTCTGCAGTGTGAACACTTACAGGCTGATGATTGTTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CAA 90 bp GCAGACACCAACAATCATCAGCCTGTTAGTGTTCACACTGCAGACACCAACAATATAGCATCCTGGATGTaGTGTAGGTCCCACTGGGTT +
Preference number: 5 (lower is better)
Translates to: ADTNNHQPVSVHTADTNNIASWM*CRSHWV
Trigger: AACCCAGTGGGACCTACACAACATCCAGGATGCTAT...ATTGTTGGTGTCTGCAGTGTGAACACTAACAGGCTGATGATTGTTGGTGTCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048044.12
CDS-3UTR CAA 90 bp GAAGTATTTCCTGAGCACAGAGAAGCTCTCCAAGAAGGCATATGCCCATGTTTTCCATCTTCACAGAAGTaGTCTGTAGCTTTGCCCAGG +
Preference number: 5 (lower is better)
Translates to: EVFPEHREALQEGICPCFPSSQK*SVALPR
Trigger: CCTGGGCAAAGCTACAGACAACTTCTGTGAAGATGG...AAAACATGGGCATATGCCTTCTTGGAGAGCTTCTCTGTGCTCAGGAAATACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS CCA 72 bp CCATGTCCCACGGCGAGCACAAGCACACCAGAAGCCTaGACATCCAAGCGATGTCCCACACCGATCTTCAGG +
Preference number: 6 (lower is better)
Translates to: PCPTASTSTPEA*TSKRCPTPIFR
Trigger: CCTGAAGATCGGTGTGGGACATCGCTTGGATGTCCAGGCTTCTGGTGTGCTTGTGCTCGCCGTGGGACATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048044.12
ENSMUST00000113807.10
ENSMUST00000177467.8
CDS CCA 72 bp CCGAGTGAGGGCCACATCATCACCAGAGCTTTTTGGTaGGAGCCTTGGATCACAGCCAGGATCCGGTCCAGC +
Preference number: 6 (lower is better)
Translates to: PSEGHIITRAFW*EPWITARIRSS
Trigger: GCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATGATGTGGCCCTCACTCGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS CCA 72 bp GACCCGAGTGAGGGCCACATCATCACCAGAGCTTTTTaGTGGGAGCCTTGGATCACAGCCAGGATCCGGTCC +
Preference number: 6 (lower is better)
Translates to: DPSEGHIITRAF*WEPWITARIRS
Trigger: GGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGATGATGTGGCCCTCACTCGGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113807.10
CDS CAA 72 bp TCCGGTCCAGCCGCTCTCTGGTCACGTGGTCATACGTaGTCTTCTCTATCAGCCGTCCATCTTCACAGAAGT +
Preference number: 6 (lower is better)
Translates to: SGPAALWSRGHT*SSLSAVHLHRS
Trigger: ACTTCTGTGAAGATGGACGGCTGATAGAGAAGACAACGTATGACCACGTGACCAGAGAGCGGCTGGACCGGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000048044.12
ENSMUST00000113807.10
ENSMUST00000177467.8
CDS CCA 72 bp TTCAGGTTTGTGAATGCTGGACCACGTACAAGTCTGTaGGTGGTGAGGGAGGGTACATTGGTGGCTCTGAGA +
Preference number: 6 (lower is better)
Translates to: FRFVNAGPRTSL*VVREGTLVALR
Trigger: TCTCAGAGCCACCAATGTACCCTCCCTCACCACCCACAGACTTGTACGTGGTCCAGCATTCACAAACCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000048044.12
ENSMUST00000113807.10
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177133.8
ENSMUST00000177467.8
CDS CAA 72 bp CCACGTACAAGTCTGTGGGTGGTGAGGGAGGGTACATaGGTGGCTCTGAGAGTCAACTTCTTCTCTTCACTG +
Preference number: 6 (lower is better)
Translates to: PRTSLWVVREGT*VALRVNFFSSL
Trigger: CAGTGAAGAGAAGAAGTTGACTCTCAGAGCCACCAATGTACCCTCCCTCACCACCCACAGACTTGTACGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000048044.12
ENSMUST00000113807.10
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177133.8
ENSMUST00000177467.8
CDS CAA 90 bp AATGCTGGACCACGTACAAGTCTGTGGGTGGTGAGGGAGGGTACATaGGTGGCTCTGAGAGTCAACTTCTTCTCTTCACTGCCTTCCACA +
Preference number: 6 (lower is better)
Translates to: NAGPRTSLWVVREGT*VALRVNFFSSLPST
Trigger: TGTGGAAGGCAGTGAAGAGAAGAAGTTGACTCTCAGAGCCACCAATGTACCCTCCCTCACCACCCACAGACTTGTACGTGGTCCAGCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000048044.12
ENSMUST00000113807.10
ENSMUST00000156846.8
ENSMUST00000176312.8
ENSMUST00000177133.8
ENSMUST00000177467.8