RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRPV4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000014158

Ensembl transcript IDs: ENSMUST00000071968.9, ENSMUST00000112217.2, ENSMUST00000112219.8, ENSMUST00000112222.8, ENSMUST00000112225.8

Found 275 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATaGGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGC +
Preference number: 1 (lower is better)
Translates to: QQVRSVAGRSCSVPA*ASALARFQPRVDSC
Trigger: GCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR GCA 90 bp GCTGCAGCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTaGATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTC +
Preference number: 1 (lower is better)
Translates to: AAAGQICGRSELQRP*MSFSPGQVPAAGGL
Trigger: GAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGCTGCAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR CCA 90 bp CTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTaGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCC +
Preference number: 1 (lower is better)
Translates to: LWQVGAAASLHELQP*PGSSRGWTPATPFS
Trigger: GGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR CCA 90 bp GGAGTAGAGCTGAAGGCAAAAGTCTTGGCGGGGACCAGAGGGTCCTaGGGCCTCCACAGAGTCGCCACAGAGGCCCTCACCTCCAAGGTC +
Preference number: 1 (lower is better)
Translates to: GVELKAKVLAGTRGS*GLHRVATEALTSKV
Trigger: GACCTTGGAGGTGAGGGCCTCTGTGGCGACTCTGTGGAGGCCCCAGGACCCTCTGGTCCCCGCCAAGACTTTTGCCTTCAGCTCTACTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR-3UTR TCA 90 bp CCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAAGAGGGATGGGGCCTaGGCCTTTCGAGGAGAGGGG +
Preference number: 2 (lower is better)
Translates to: PGQVPAAGGLLPPHFPEEKRDGA*AFRGEG
Trigger: CCCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTT...CTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR-3UTR GCA 90 bp GGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCACCGCGGGTGGACTCCTaGCACCCCATTTTCCTGAGG +
Preference number: 2 (lower is better)
Translates to: GRSELQRPCMSFSPGQVPPRVDS*HPIFLR
Trigger: CCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGG...TGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR-3UTR TCA 90 bp GCAGCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAAGAGGGATGGGGCCTaGGCCTTTCGAGGAGAGGGG +
Preference number: 2 (lower is better)
Translates to: AAGQICGRSELQRPCMSFKRDGA*AFRGEG
Trigger: CCCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTT...GAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR-3UTR CCA 90 bp CTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAAGCGAAGGCCAAGCCTaGACTATCTGTGCGAGCTCT +
Preference number: 2 (lower is better)
Translates to: LARFQPRVDSCHPIFLRRSEGQA*TICASS
Trigger: AGAGCTCGCACAGATAGTCCAGGCTTGGCCTTCGCT...TCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR-3UTR TCA 90 bp TTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTACAGAAGACCCACACTAGCTGCAGCGTCCCTGCATaGGCTTCAGCCCTGGCCAGG +
Preference number: 2 (lower is better)
Translates to: LLSTSGPDLFKVQKTHTSCSVPA*ASALAR
Trigger: CCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCA...GCTAGTGTGGGTCTTCTGTACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR-3UTR CCA 90 bp TACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGAGAGGGGCCTTGTGCTGGCTATGCCTAAATGTAGGTaGGAGCGAAGGCCAAGCCTG +
Preference number: 2 (lower is better)
Translates to: YTRGMGPEPFEERGLVLAMPKCR*ERRPSL
Trigger: CAGGCTTGGCCTTCGCTCCCACCTACATTTAGGCAT...AGCCAGCACAAGGCCCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR-3UTR GCA 90 bp TCCACCGAGAATAAACATTTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTACCGCGGGTGGACTCCTaGCACCCCATTTTCCTGAGG +
Preference number: 2 (lower is better)
Translates to: STENKHLLSTSGPDLFKVPRVDS*HPIFLR
Trigger: CCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGG...TACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAAATGTTTATTCTCGGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR-3UTR CCA 90 bp TCCACCGAGAATAAACATTTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTAAGCGAAGGCCAAGCCTaGACTATCTGTGCGAGCTCT +
Preference number: 2 (lower is better)
Translates to: STENKHLLSTSGPDLFKVSEGQA*TICASS
Trigger: AGAGCTCGCACAGATAGTCCAGGCTTGGCCTTCGCT...TACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAAATGTTTATTCTCGGTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR CCA 72 bp GTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTaGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACC +
Preference number: 3 (lower is better)
Translates to: VGAAASLHELQP*PGSSRGWTPAT
Trigger: GGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGAC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR TCA 72 bp AGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATaGGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTG +
Preference number: 3 (lower is better)
Translates to: RSVAGRSCSVPA*ASALARFQPRV
Trigger: CACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR GCA 72 bp GGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTaGATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCG +
Preference number: 3 (lower is better)
Translates to: GQICGRSELQRP*MSFSPGQVPAA
Trigger: CGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR CCA 72 bp CTGAAGGCAAAAGTCTTGGCGGGGACCAGAGGGTCCTaGGGCCTCCACAGAGTCGCCACAGAGGCCCTCACC +
Preference number: 3 (lower is better)
Translates to: LKAKVLAGTRGS*GLHRVATEALT
Trigger: GGTGAGGGCCTCTGTGGCGACTCTGTGGAGGCCCCAGGACCCTCTGGTCCCCGCCAAGACTTTTGCCTTCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR GCA 72 bp AAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATaGCTAAATGTAGGTGGGAGCGAAGGCCAAGCCTGG +
Preference number: 3 (lower is better)
Translates to: KVPCGCGKTPDK*LNVGGSEGQAW
Trigger: CCAGGCTTGGCCTTCGCTCCCACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR GCA 72 bp AGAGTCGCCACAGAGGCCCTCACCTCCAAGGTCCCATaGGGGTGTGGGAAGACACCGGACAAATGCCTAAAT +
Preference number: 3 (lower is better)
Translates to: RVATEALTSKVP*GCGKTPDKCLN
Trigger: ATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGTGAGGGCCTCTGTGGCGACTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR GCA 72 bp TCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTaGCACCCCATTTTCCTGAGGAGAGCAATAAATAAT +
Preference number: 3 (lower is better)
Translates to: SALARFQPRVDS*HPIFLRRAINN
Trigger: ATTATTTATTGCTCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR GCA 72 bp CTCTTCAAAGTACAGAAGACCCACACTAGCCAGGGCTaGAGCAGGTCAGATCTGTGGCAGGTCGGAGCTGCA +
Preference number: 3 (lower is better)
Translates to: LFKVQKTHTSQG*SRSDLWQVGAA
Trigger: TGCAGCTCCGACCTGCCACAGATCTGACCTGCTGCAGCCCTGGCTAGTGTGGGTCTTCTGTACTTTGAAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR CCA 72 bp GTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTaGGAGCGAAGGCCAAGCCTGGACTATCTGTGCGAG +
Preference number: 3 (lower is better)
Translates to: VWEDTGQMPKCR*ERRPSLDYLCE
Trigger: CTCGCACAGATAGTCCAGGCTTGGCCTTCGCTCCCACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR-3UTR CAA 90 bp CTGAGGAGAGCAATAAATAATACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGCTGAAGGCAAAAGTCTaGGCGGGGACCAGAGGGTCC +
Preference number: 3 (lower is better)
Translates to: LRRAINNTQEGWGLSLSRLKAKV*AGTRGS
Trigger: GGACCCTCTGGTCCCCGCCAAGACTTTTGCCTTCAG...CCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTATTATTTATTGCTCTCCTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
3UTR CCA 72 bp TTCCTGAGGAGAGCAATAAATAATACACAAGAGGGATaGGGCCTGAGCCTTTCGAGGAGAGGGGCCTTGTGC +
Preference number: 3 (lower is better)
Translates to: FLRRAINNTQEG*GLSLSRRGALC
Trigger: GCACAAGGCCCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTATTATTTATTGCTCTCCTCAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCCCCTCATCCTTGGGCTaGAAGAAGCGGCCGCGGGCC +
Preference number: 4 (lower is better)
Translates to: VGAAASLHELQPWPGSSRPSSLG*KKRPRA
Trigger: GGCCCGCGGCCGCTTCTTCCAGCCCAAGGATGAGGG...GCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGCCCTCATCCTTGGGCTaGAAGAAGCGGCCGCGGGCC +
Preference number: 4 (lower is better)
Translates to: PGQVPAAGGLLPPHFPEEPSSLG*KKRPRA
Trigger: GGCCCGCGGCCGCTTCTTCCAGCCCAAGGATGAGGG...CTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCGGGTGTTGTCGGCGATaGCCACCAGCGCGTGCAGCA +
Preference number: 4 (lower is better)
Translates to: SLHELQPWPGSSRGWTPAGCCRR*PPARAA
Trigger: TGCTGCACGCGCTGGTGGCCATCGCCGACAACACCC...GGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTTGCACGTCGGCTCCCTaGGCCACCAGCAGCTCCACG +
Preference number: 4 (lower is better)
Translates to: FSPGQVPAAGGLLPPHFPCTSAP*ATSSST
Trigger: CGTGGAGCTGCTGGTGGCCCAGGGAGCCGACGTGCA...AGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTCGATGTGCGGCTGGTTaGTGCAGGCTGCCAGGGACA +
Preference number: 4 (lower is better)
Translates to: ELQRPCMSFSPGQVPAAGRCAAG*CRLPGT
Trigger: TGTCCCTGGCAGCCTGCACCAACCAGCCGCACATCG...ACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp TCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCCGGGGTACTTGGCGCTaGTCAGCATCTCCAGGTCTC +
Preference number: 4 (lower is better)
Translates to: SLHELQPWPGSSRGWTPARGTWR*SASPGL
Trigger: GAGACCTGGAGATGCTGAGCAGCGCCAAGTACCCCG...GGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAGGCAGGTCTTCCCCGTaGACGGCTCCCGGAACTCCT +
Preference number: 4 (lower is better)
Translates to: LARFQPRVDSCHPIFLRRGRSSP*TAPGTP
Trigger: AGGAGTTCCGGGAGCCGTCCACGGGGAAGACCTGCC...TCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp AGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCCCAGCAACACCGGGATaGTGTCGTTGCGCCCGTTGC +
Preference number: 4 (lower is better)
Translates to: RSELQRPCMSFSPGQVPAPATPG*CRCARC
Trigger: GCAACGGGCGCAACGACACCATCCCGGTGTTGCTGG...GGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGCGATGTGCGGCTGGTTaGTGCAGGCTGCCAGGGACA +
Preference number: 4 (lower is better)
Translates to: PGQVPAAGGLLPPHFPEERCAAG*CRLPGT
Trigger: TGTCCCTGGCAGCCTGCACCAACCAGCCGCACATCG...CTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp AGGGCTGCAGCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGGGGTGTTGTCGGCGATaGCCACCAGCGCGTGCAGCA +
Preference number: 4 (lower is better)
Translates to: RAAAGQICGRSELQRPCMGCCRR*PPARAA
Trigger: TGCTGCACGCGCTGGTGGCCATCGCCGACAACACCC...CATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGCTGCAGCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp GAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGTCGGGGAAGAGGCGTaGACACTTGAGAAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: ELQRPCMSFSPGQVPAAGVGEEA*TLEKQQ
Trigger: CTGCTGCTTCTCAAGTGTTCACGCCTCTTCCCCGAC...ACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp GGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAGCGTCCGGAGTGCCATCTaGGCTCTTGCCCACAGTCAC +
Preference number: 4 (lower is better)
Translates to: GQVPAAGGLLPPHFPEESVRSAI*ALAHSH
Trigger: GTGACTGTGGGCAAGAGCTCAGATGGCACTCCGGAC...GCTCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp GGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGGTTGGGAACCCCCTTaGGGAAAGCGCCCTGGAACT +
Preference number: 4 (lower is better)
Translates to: GRSELQRPCMSFSPGQVPGWEPP*GKRPGT
Trigger: AGTTCCAGGGCGCTTTCCGCAAGGGGGTTCCCAACC...TGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp CGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCGGGATGGTGTCGTTaGGCCCGTTGCTTAGGTTCA +
Preference number: 4 (lower is better)
Translates to: RPCMSFSPGQVPAAGGLLPGWCR*ARCLGS
Trigger: TGAACCTAAGCAACGGGCGCAACGACACCATCCCGG...CAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp TCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCAAGGGTAGGGTGGCGTaGCCTCCAGTGGCTGATAGT +
Preference number: 4 (lower is better)
Translates to: SLHELQPWPGSSRGWTPAKGRVA*PPVADS
Trigger: ACTATCAGCCACTGGAGGGCACGCCACCCTACCCTT...GGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp AGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCACCTGCGGTCCGGAGTaGCATCTGAGCTCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: RSELQRPCMSFSPGQVPATCGPE*HLSSCP
Trigger: TGGGCAAGAGCTCAGATGGCACTCCGGACCGCAGGT...GGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGGGGGTGCAGGAGCTTTaGGGCTCTGTGGCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: PGQVPAAGGLLPPHFPEEGVQEL*GSVAAS
Trigger: AGAAGCAGCCACAGAGCCCCAAAGCTCCTGCACCCC...CTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTAGCCTCCCTCATCCTTaGGCTGGAAGAAGCGGCCGC +
Preference number: 4 (lower is better)
Translates to: FSPGQVPAAGGLLPPHFPSLPHP*AGRSGR
Trigger: GCGGCCGCTTCTTCCAGCCCAAGGATGAGGGAGGCT...AGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp AGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCTTGACGATGTGCGGCTaGTTGGTGCAGGCTGCCAGG +
Preference number: 4 (lower is better)
Translates to: RSELQRPCMSFSPGQVPALTMCG*LVQAAR
Trigger: CCTGGCAGCCTGCACCAACCAGCCGCACATCGTCAA...GGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTGGCGTGCCCTCCAGTaGCTGATAGTAGGCGGTGAG +
Preference number: 4 (lower is better)
Translates to: ELQPWPGSSRGWTPATPFWRALQ*LIVGGE
Trigger: CTCACCGCCTACTATCAGCCACTGGAGGGCACGCCA...AAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGTGGCGTGCCCTCCAGTaGCTGATAGTAGGCGGTGAG +
Preference number: 4 (lower is better)
Translates to: PGQVPAAGGLLPPHFPEEWRALQ*LIVGGE
Trigger: CTCACCGCCTACTATCAGCCACTGGAGGGCACGCCA...CTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GCAGCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCCCGGTAAGGGTAGGGTaGCGTGCCCTCCAGTGGCTG +
Preference number: 4 (lower is better)
Translates to: AAGQICGRSELQRPCMSFPVRVG*RALQWL
Trigger: CAGCCACTGGAGGGCACGCCACCCTACCCTTACCGG...GAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp GGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCACCGGGATGGTGTCGTTaGGCCCGTTGCTTAGGTTCA +
Preference number: 4 (lower is better)
Translates to: GRSELQRPCMSFSPGQVPPGWCR*ARCLGS
Trigger: TGAACCTAAGCAACGGGCGCAACGACACCATCCCGG...TGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp GGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAGCTGGGCACCGTGCAGTTaGTCTGGTCCTCGTCACAGA +
Preference number: 4 (lower is better)
Translates to: GQVPAAGGLLPPHFPEESWAPCS*SGPRHR
Trigger: TCTGTGACGAGGACCAGAGCAACTGCACGGTGCCCA...GCTCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGACCATGGGCGCTTTCTTaGGCCCAGGCACTACTGAGG +
Preference number: 4 (lower is better)
Translates to: LARFQPRVDSCHPIFLRRPWALS*AQALLR
Trigger: CCTCAGTAGTGCCTGGGCCCAAGAAAGCGCCCATGG...TCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCCGAACAAGGAATCCATaGGCGCTTTCTTGGGCCCAG +
Preference number: 4 (lower is better)
Translates to: VGAAASLHELQPWPGSSRRTRNP*ALSWAQ
Trigger: CTGGGCCCAAGAAAGCGCCCATGGATTCCTTGTTCG...GCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCAGCTTTGGGGCTCTGTaGCTGCTTCTCCACGACCTT +
Preference number: 4 (lower is better)
Translates to: VGAAASLHELQPWPGSSRSFGAL*LLLHDL
Trigger: AAGGTCGTGGAGAAGCAGCCACAGAGCCCCAAAGCT...GCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGGGGTGCAGGAGCTTTaGGGCTCTGTGGCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: FSPGQVPAAGGLLPPHFPGVQEL*GSVAAS
Trigger: AGAAGCAGCCACAGAGCCCCAAAGCTCCTGCACCCC...AGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CGAGGAGAGGGGCCTTGTGCTGGCTTAGGTGACTCCATGGGAGCGAGCGAGACAAGCCTCCCTCATCCTTaGGCTGGAAGAAGCGGCCGC +
Preference number: 4 (lower is better)
Translates to: RGEGPCAGLGDSMGASETSLPHP*AGRSGR
Trigger: GCGGCCGCTTCTTCCAGCCCAAGGATGAGGGAGGCT...TGTCTCGCTCGCTCCCATGGAGTCACCTAAGCCAGCACAAGGCCCCTCTCCTCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAGCCGATGTCCAGGATGGTaGTGGCCCACTGCAACTTCC +
Preference number: 4 (lower is better)
Translates to: GQVPAAGGLLPPHFPEESRCPGW*WPTATS
Trigger: GGAAGTTGCAGTGGGCCACCACCATCCTGGACATCG...GCTCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTGCTCGATGTCCAGGATaGTGGTGGCCCACTGCAACT +
Preference number: 4 (lower is better)
Translates to: ELQPWPGSSRGWTPATPFARCPG*WWPTAT
Trigger: AGTTGCAGTGGGCCACCACCATCCTGGACATCGAGC...AAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp AGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCTCTCTGTCAGGTAGTTaGCGATGTGCGGCTGGTTGG +
Preference number: 4 (lower is better)
Translates to: RSELQRPCMSFSPGQVPASLSGS*RCAAGW
Trigger: CCAACCAGCCGCACATCGTCAACTACCTGACAGAGA...GGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp TCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCGATAGGAGACCACGTTaGTGTAGAAGGACACAGCCC +
Preference number: 4 (lower is better)
Translates to: SLHELQPWPGSSRGWTPADRRPR*CRRTQP
Trigger: GGGCTGTGTCCTTCTACATCAACGTGGTCTCCTATC...GGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp GCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCACGCATGTTGCCGGTaGGCTCCGCAATGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: AGQICGRSELQRPCMSFSHACCR*APQCPA
Trigger: TGCTGGACATTGCGGAGCGCACCGGCAACATGCGTG...GCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp TACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGAGAGGGGCCTTGTGCTGGCTTGTGCGGCTGGTTGGTaGAGGCTGCCAGGGACAAGG +
Preference number: 4 (lower is better)
Translates to: YTRGMGPEPFEERGLVLACAAGW*RLPGTR
Trigger: CCTTGTCCCTGGCAGCCTGCACCAACCAGCCGCACA...AGCCAGCACAAGGCCCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp CTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAAAGGGTAGGGTGGCGTaGCCTCCAGTGGCTGATAGT +
Preference number: 4 (lower is better)
Translates to: LARFQPRVDSCHPIFLRRKGRVA*PPVADS
Trigger: ACTATCAGCCACTGGAGGGCACGCCACCCTACCCTT...TCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp CGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGTGCCATCTGAGCTCTTaGCCACAGTCACCATCTCTC +
Preference number: 4 (lower is better)
Translates to: RPCMSFSPGQVPAAGGLLCHLSS*PQSPSL
Trigger: GAGAGATGGTGACTGTGGGCAAGAGCTCAGATGGCA...CAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGACTTCATACGCAGGTTTaGACGTCCATCGCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: LARFQPRVDSCHPIFLRRLHTQV*TSIARA
Trigger: GGCCCTGGCGATGGACGTCCAAACCTGCGTATGAAG...TCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GCAGCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCTTGACGATGTGCGGCTaGTTGGTGCAGGCTGCCAGG +
Preference number: 4 (lower is better)
Translates to: AAGQICGRSELQRPCMSFLTMCG*LVQAAR
Trigger: CCTGGCAGCCTGCACCAACCAGCCGCACATCGTCAA...GAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp AGGGCTGCAGCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGTGTGCTTGCTCTCCTTaGACACCTGGCCCACGGTCT +
Preference number: 4 (lower is better)
Translates to: RAAAGQICGRSELQRPCMCACSP*TPGPRS
Trigger: AGACCGTGGGCCAGGTGTCCAAGGAGAGCAAGCACA...CATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGCTGCAGCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGTGTCCAGGATGGTGGTaGCCCACTGCAACTTCCAGA +
Preference number: 4 (lower is better)
Translates to: PGQVPAAGGLLPPHFPEECPGWW*PTATSR
Trigger: TCTGGAAGTTGCAGTGGGCCACCACCATCCTGGACA...CTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp TTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTCATAGGCCCAGTCCTTaGACTTGCGAGACAGATGCC +
Preference number: 4 (lower is better)
Translates to: FSPGQVPAAGGLLPPHFPHRPSP*TCETDA
Trigger: GGCATCTGTCTCGCAAGTTCAAGGACTGGGCCTATG...AGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp GTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCAGGCATAGCCGATCATaGAGAGCAGGTACACAAGCA +
Preference number: 4 (lower is better)
Translates to: VGAAASLHELQPWPGSSRRHSRS*RAGTQA
Trigger: TGCTTGTGTACCTGCTCTTCATGATCGGCTATGCCT...GCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp GCCCTCACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAGTCCGGAGTGCCATCTaGGCTCTTGCCCACAGTCAC +
Preference number: 4 (lower is better)
Translates to: ALTSKVPCGCGKTPDKCLVRSAI*ALAHSH
Trigger: GTGACTGTGGGCAAGAGCTCAGATGGCACTCCGGAC...TAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGTGAGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp GCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCGAACTGTCTCCAGGTTaGTGTCGGGGAAGAGGCGTG +
Preference number: 4 (lower is better)
Translates to: AGQICGRSELQRPCMSFSELSPG*CRGRGV
Trigger: CACGCCTCTTCCCCGACAGCAACCTGGAGACAGTTC...GCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp GGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAGCGAAAGACCCCGATCTTaGCTGTCTTGGCAGCCATCA +
Preference number: 4 (lower is better)
Translates to: GQVPAAGGLLPPHFPEESERPRS*LSWQPS
Trigger: TGATGGCTGCCAAGACAGGCAAGATCGGGGTCTTTC...GCTCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp AGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGAAAGACCCCGATCTTaGCTGTCTTGGCAGCCATCA +
Preference number: 4 (lower is better)
Translates to: RSELQRPCMSFSPGQVPAERPRS*LSWQPS
Trigger: TGATGGCTGCCAAGACAGGCAAGATCGGGGTCTTTC...GGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp GAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGCGGTTCTCGATCTTaGTGTTGTACACCAGGATCT +
Preference number: 4 (lower is better)
Translates to: ELQRPCMSFSPGQVPAAGGGSRS*CCTPGS
Trigger: AGATCCTGGTGTACAACAGCAAGATCGAGAACCGCC...ACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp GCAGCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCTGGGCACCGTGCAGTTaGTCTGGTCCTCGTCACAGA +
Preference number: 4 (lower is better)
Translates to: AAGQICGRSELQRPCMSFWAPCS*SGPRHR
Trigger: TCTGTGACGAGGACCAGAGCAACTGCACGGTGCCCA...GAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CGAGGAGAGGGGCCTTGTGCTGGCTTAGGTGACTCCATGGGAGCGAGCGAGACACCCCCTCAAACAGATTaGCCAGGGAAGAGAGGGGGA +
Preference number: 4 (lower is better)
Translates to: RGEGPCAGLGDSMGASETPPQTD*PGKRGG
Trigger: TCCCCCTCTCTTCCCTGGCCAATCTGTTTGAGGGGG...TGTCTCGCTCGCTCCCATGGAGTCACCTAAGCCAGCACAAGGCCCCTCTCCTCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAACAGGTCAATGGGGTTaGGAACCCCCTTGCGGAAAG +
Preference number: 4 (lower is better)
Translates to: LARFQPRVDSCHPIFLRRTGQWG*EPPCGK
Trigger: CTTTCCGCAAGGGGGTTCCCAACCCCATTGACCTGT...TCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GCCCTCACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTACCATGGGCGCTTTCTTaGGCCCAGGCACTACTGAGG +
Preference number: 4 (lower is better)
Translates to: ALTSKVPCGCGKTPDKCLPWALS*AQALLR
Trigger: CCTCAGTAGTGCCTGGGCCCAAGAAAGCGCCCATGG...TAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGTGAGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGATCTCTTGTTGTCACTaGGGTGGTGACGGTAAGTGC +
Preference number: 4 (lower is better)
Translates to: RPCMSFSPGQVPAAGGLLISCCH*GGDGKC
Trigger: GCACTTACCGTCACCACCCCAGTGACAACAAGAGAT...CAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CGAGGAGAGGGGCCTTGTGCTGGCTTAGGTGACTCCATGGGAGCGAGCGAGACACATCTAGGTCCGCAGTaGAGCCCCGGGACACAATGT +
Preference number: 4 (lower is better)
Translates to: RGEGPCAGLGDSMGASETHLGPQ*SPGTQC
Trigger: ACATTGTGTCCCGGGGCTCCACTGCGGACCTAGATG...TGTCTCGCTCGCTCCCATGGAGTCACCTAAGCCAGCACAAGGCCCCTCTCCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTGTCAGGCGCTTCTTGTaGGTCAACAAGAAGGAGAGC +
Preference number: 4 (lower is better)
Translates to: ELQPWPGSSRGWTPATPFVRRFL*VNKKES
Trigger: GCTCTCCTTCTTGTTGACCCACAAGAAGCGCCTGAC...AAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTGGGAGCGAAGGCCAATGCACGTCGGCTCCCTaGGCCACCAGCAGCTCCACG +
Preference number: 4 (lower is better)
Translates to: GCGKTPDKCLNVGGSEGQCTSAP*ATSSST
Trigger: CGTGGAGCTGCTGGTGGCCCAGGGAGCCGACGTGCA...TTGGCCTTCGCTCCCACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTGGGAGCCCGGTAAGGGTAGGGTaGCGTGCCCTCCAGTGGCTG +
Preference number: 4 (lower is better)
Translates to: VPCGCGKTPDKCLNVGGSPVRVG*RALQWL
Trigger: CAGCCACTGGAGGGCACGCCACCCTACCCTTACCGG...GCTCCCACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAGCCACAGACCTTCATGTTaGTGCACGGATTCAGGAGGG +
Preference number: 4 (lower is better)
Translates to: GQVPAAGGLLPPHFPEESHRPSC*CTDSGG
Trigger: CCCTCCTGAATCCGTGCACCAACATGAAGGTCTGTG...GCTCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CGAGGAGAGGGGCCTTGTGCTGGCTTAGGTGACTCCATGGGAGCGAGCGAGACACGATGTCCAGGATGGTaGTGGCCCACTGCAACTTCC +
Preference number: 4 (lower is better)
Translates to: RGEGPCAGLGDSMGASETRCPGW*WPTATS
Trigger: GGAAGTTGCAGTGGGCCACCACCATCCTGGACATCG...TGTCTCGCTCGCTCCCATGGAGTCACCTAAGCCAGCACAAGGCCCCTCTCCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp CGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGGGTCGTACATCTTGGTaGCAAACTTGGTGTTCTCTC +
Preference number: 4 (lower is better)
Translates to: RPCMSFSPGQVPAAGGLLGRTSW*QTWCSL
Trigger: GAGAGAACACCAAGTTTGTCACCAAGATGTACGACC...CAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp CGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCAGCACAGAGTAGATaGAGTAGAGTAACTGGAAGG +
Preference number: 4 (lower is better)
Translates to: RPCMSFSPGQVPAAGGLLPAQSR*SRVTGR
Trigger: CCTTCCAGTTACTCTACTTCATCTACTCTGTGCTGG...CAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp GAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTGGATCTTCTGAATCATaGTGCTGTAGGTCCCCGTCA +
Preference number: 4 (lower is better)
Translates to: ELQPWPGSSRGWTPATPFGSSES*CCRSPS
Trigger: TGACGGGGACCTACAGCATCATGATTCAGAAGATCC...AAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp GGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGGATCTTCTGAATCATaGTGCTGTAGGTCCCCGTCA +
Preference number: 4 (lower is better)
Translates to: GRSELQRPCMSFSPGQVPGSSES*CCRSPS
Trigger: TGACGGGGACCTACAGCATCATGATTCAGAAGATCC...TGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp TTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTATGGTGGTGGCCCACTaGAACTTCCAGATGTGCTTG +
Preference number: 4 (lower is better)
Translates to: FSPGQVPAAGGLLPPHFPMVVAH*NFQMCL
Trigger: CAAGCACATCTGGAAGTTGCAGTGGGCCACCACCAT...AGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TTTCGAGGAGAGGGGCCTTGTGCTGGCTTAGGTGACTCCATGGGAGCGAGCGAGCTTCATACGCAGGTTTaGACGTCCATCGCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: FRGEGPCAGLGDSMGASELHTQV*TSIARA
Trigger: GGCCCTGGCGATGGACGTCCAAACCTGCGTATGAAG...CTCGCTCGCTCCCATGGAGTCACCTAAGCCAGCACAAGGCCCCTCTCCTCGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GCAGCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCACAGGTCAATGGGGTTaGGAACCCCCTTGCGGAAAG +
Preference number: 4 (lower is better)
Translates to: AAGQICGRSELQRPCMSFTGQWG*EPPCGK
Trigger: CTTTCCGCAAGGGGGTTCCCAACCCCATTGACCTGT...GAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTGGGAGCGAAGGCCAAGGCAGGTCTTCCCCGTaGACGGCTCCCGGAACTCCT +
Preference number: 4 (lower is better)
Translates to: GCGKTPDKCLNVGGSEGQGRSSP*TAPGTP
Trigger: AGGAGTTCCGGGAGCCGTCCACGGGGAAGACCTGCC...TTGGCCTTCGCTCCCACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCTGCAGCGCCGTTCGATaGCAATGTGCAGGGATGTCT +
Preference number: 4 (lower is better)
Translates to: AGQICGRSELQRPCMSFSCSAVR*QCAGMS
Trigger: AGACATCCCTGCACATTGCCATCGAACGGCGCTGCA...GCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TTTCGAGGAGAGGGGCCTTGTGCTGGCTTAGGTGACTCCATGGGAGCGAGCGAGAGACCACGGGGTACTTaGCGCTGCTCAGCATCTCCA +
Preference number: 4 (lower is better)
Translates to: FRGEGPCAGLGDSMGASERPRGT*RCSASP
Trigger: TGGAGATGCTGAGCAGCGCCAAGTACCCCGTGGTCT...CTCGCTCGCTCCCATGGAGTCACCTAAGCCAGCACAAGGCCCCTCTCCTCGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp GCAGCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGAGGCGTGAACACTTaGGAAGCAGCAGGTCGTACA +
Preference number: 4 (lower is better)
Translates to: AAGQICGRSELQRPCMSFRGVNT*EAAGRT
Trigger: TGTACGACCTGCTGCTTCTCAAGTGTTCACGCCTCT...GAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp AGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCAAAGGCCATCATTGTTaGGAACTGTCTCCAGGTTGC +
Preference number: 4 (lower is better)
Translates to: RSELQRPCMSFSPGQVPAKGHHC*ELSPGC
Trigger: GCAACCTGGAGACAGTTCTCAACAATGATGGCCTTT...GGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp GGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAAAAGGCCATCATTGTTaGGAACTGTCTCCAGGTTGC +
Preference number: 4 (lower is better)
Translates to: GRSELQRPCMSFSPGQVPKGHHC*ELSPGC
Trigger: GCAACCTGGAGACAGTTCTCAACAATGATGGCCTTT...TGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp GCCCTCACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTACATAGGCCCAGTCCTTaGACTTGCGAGACAGATGCC +
Preference number: 4 (lower is better)
Translates to: ALTSKVPCGCGKTPDKCLHRPSP*TCETDA
Trigger: GGCATCTGTCTCGCAAGTTCAAGGACTGGGCCTATG...TAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGTGAGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp AGGGCTGCAGCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGGCATAGCCGATCATaGAGAGCAGGTACACAAGCA +
Preference number: 4 (lower is better)
Translates to: RAAAGQICGRSELQRPCMRHSRS*RAGTQA
Trigger: TGCTTGTGTACCTGCTCTTCATGATCGGCTATGCCT...CATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGCTGCAGCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp TTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTACAGAAGACCCACACTAGCCCAGGAGGAAGGCGCTaGAGGTCTCGCTGTCGCGGC +
Preference number: 4 (lower is better)
Translates to: LLSTSGPDLFKVQKTHTSPGGRR*RSRCRG
Trigger: GCCGCGACAGCGAGACCTTCAGCGCCTTCCTCCTGG...GCTAGTGTGGGTCTTCTGTACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp CTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTGTGCGGCTGGTTGGTaGAGGCTGCCAGGGACAAGG +
Preference number: 4 (lower is better)
Translates to: LQGPMRVWEDTGQMPKCRCAAGW*RLPGTR
Trigger: CCTTGTCCCTGGCAGCCTGCACCAACCAGCCGCACA...CCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TTTCGAGGAGAGGGGCCTTGTGCTGGCTTAGGTGACTCCATGGGAGCGAGCGAGCGAACAAGGAATCCATaGGCGCTTTCTTGGGCCCAG +
Preference number: 4 (lower is better)
Translates to: FRGEGPCAGLGDSMGASERTRNP*ALSWAQ
Trigger: CTGGGCCCAAGAAAGCGCCCATGGATTCCTTGTTCG...CTCGCTCGCTCCCATGGAGTCACCTAAGCCAGCACAAGGCCCCTCTCCTCGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTGGTTCAGCAGCGCCTTaGGCAGGCAGGTCTTCCCCG +
Preference number: 4 (lower is better)
Translates to: SKVPCGCGKTPDKCLNVGGSAAP*AGRSSP
Trigger: CGGGGAAGACCTGCCTGCCCAAGGCGCTGCTGAACC...ACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGCCAGCAACACCGGGATaGTGTCGTTGCGCCCGTTGC +
Preference number: 4 (lower is better)
Translates to: LQGPMRVWEDTGQMPKCRPATPG*CRCARC
Trigger: GCAACGGGCGCAACGACACCATCCCGGTGTTGCTGG...CCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GCCCTCACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTATGTCCAGGATGGTGGTaGCCCACTGCAACTTCCAGA +
Preference number: 4 (lower is better)
Translates to: ALTSKVPCGCGKTPDKCLCPGWW*PTATSR
Trigger: TCTGGAAGTTGCAGTGGGCCACCACCATCCTGGACA...TAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGTGAGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp TACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGAGAGGGGCCTTGTGCTGGCTGATAGGAGACCACGTTaGTGTAGAAGGACACAGCCC +
Preference number: 4 (lower is better)
Translates to: YTRGMGPEPFEERGLVLADRRPR*CRRTQP
Trigger: GGGCTGTGTCCTTCTACATCAACGTGGTCTCCTATC...AGCCAGCACAAGGCCCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp CCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAGCGGAAGAGGTCTTTaGAGAGGATCTTCTGAATCA +
Preference number: 4 (lower is better)
Translates to: PGQVPAAGGLLPPHFPEESGRGL*RGSSES
Trigger: TGATTCAGAAGATCCTCTTCAAAGACCTCTTCCGCT...CTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp AGAGCAATAAATAATACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGAGAGGGCCAGGAGGAAGGCGCTaGAGGTCTCGCTGTCGCGGC +
Preference number: 4 (lower is better)
Translates to: RAINNTQEGWGLSLSRRGPGGRR*RSRCRG
Trigger: GCCGCGACAGCGAGACCTTCAGCGCCTTCCTCCTGG...CCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTATTATTTATTGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp CTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGACCTGCGGTCCGGAGTaGCATCTGAGCTCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: LQGPMRVWEDTGQMPKCRTCGPE*HLSSCP
Trigger: TGGGCAAGAGCTCAGATGGCACTCCGGACCGCAGGT...CCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp GTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTGGGAGCCATCTAGGTCCGCAGTaGAGCCCCGGGACACAATGT +
Preference number: 4 (lower is better)
Translates to: VPCGCGKTPDKCLNVGGSHLGPQ*SPGTQC
Trigger: ACATTGTGTCCCGGGGCTCCACTGCGGACCTAGATG...GCTCCCACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGAGAGGGGCCTTGTGCTGGCTGTCAGGCGCTTCTTGTaGGTCAACAAGAAGGAGAGC +
Preference number: 4 (lower is better)
Translates to: YTRGMGPEPFEERGLVLAVRRFL*VNKKES
Trigger: GCTCTCCTTCTTGTTGACCCACAAGAAGCGCCTGAC...AGCCAGCACAAGGCCCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTACAGAAGACCCACACTAGCGGTTCAGCAGCGCCTTaGGCAGGCAGGTCTTCCCCG +
Preference number: 4 (lower is better)
Translates to: LLSTSGPDLFKVQKTHTSGSAAP*AGRSSP
Trigger: CGGGGAAGACCTGCCTGCCCAAGGCGCTGCTGAACC...GCTAGTGTGGGTCTTCTGTACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTCGTCCGTCCTCCACTTaGGAGCGTAGCCCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: SKVPCGCGKTPDKCLNVGRPSST*ERSPAG
Trigger: ACCAGCAGGGCTACGCTCCCAAGTGGAGGACGGACG...ACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp GCCCTCACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTACACTTCATCTGCGCTTaGGTTCTTGTTCAGCTCCAC +
Preference number: 4 (lower is better)
Translates to: ALTSKVPCGCGKTPDKCLHFICA*VLVQLH
Trigger: GTGGAGCTGAACAAGAACTCAAGCGCAGATGAAGTG...TAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGTGAGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp ACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTTGGGAACCCCCTTaGGGAAAGCGCCCTGGAACT +
Preference number: 4 (lower is better)
Translates to: TSKVPCGCGKTPDKCLNVGWEPP*GKRPGT
Trigger: AGTTCCAGGGCGCTTTCCGCAAGGGGGTTCCCAACC...TACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp TACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGAGAGGGGCCTTGTGCTGGCTGGCGGTTCTCGATCTTaGTGTTGTACACCAGGATCT +
Preference number: 4 (lower is better)
Translates to: YTRGMGPEPFEERGLVLAGGSRS*CCTPGS
Trigger: AGATCCTGGTGTACAACAGCAAGATCGAGAACCGCC...AGCCAGCACAAGGCCCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp ACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTACGGGGTACTTGGCGCTaGTCAGCATCTCCAGGTCTC +
Preference number: 4 (lower is better)
Translates to: TSKVPCGCGKTPDKCLNVRGTWR*SASPGL
Trigger: GAGACCTGGAGATGCTGAGCAGCGCCAAGTACCCCG...TACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGGCTCGATGTCCAGGATaGTGGTGGCCCACTGCAACT +
Preference number: 4 (lower is better)
Translates to: LQGPMRVWEDTGQMPKCRARCPG*WWPTAT
Trigger: AGTTGCAGTGGGCCACCACCATCCTGGACATCGAGC...CCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTACAGAAGACCCACACTAGCCGTCCGTCCTCCACTTaGGAGCGTAGCCCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: LLSTSGPDLFKVQKTHTSRPSST*ERSPAG
Trigger: ACCAGCAGGGCTACGCTCCCAAGTGGAGGACGGACG...GCTAGTGTGGGTCTTCTGTACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp AGAGCAATAAATAATACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGAGAGGGGGGCCCAGGCACTACTaGGGACTCGTACAGGGTGGA +
Preference number: 4 (lower is better)
Translates to: RAINNTQEGWGLSLSRRGGPRHY*GLVQGG
Trigger: TCCACCCTGTACGAGTCCTCAGTAGTGCCTGGGCCC...CCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTATTATTTATTGCTCT
56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp GTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTGGGAGCATGGTGGTGGCCCACTaGAACTTCCAGATGTGCTTG +
Preference number: 4 (lower is better)
Translates to: VPCGCGKTPDKCLNVGGSMVVAH*NFQMCL
Trigger: CAAGCACATCTGGAAGTTGCAGTGGGCCACCACCAT...GCTCCCACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTCCCCCTCAAACAGATTaGCCAGGGAAGAGAGGGGGA +
Preference number: 4 (lower is better)
Translates to: SKVPCGCGKTPDKCLNVGPPQTD*PGKRGG
Trigger: TCCCCCTCTCTTCCCTGGCCAATCTGTTTGAGGGGG...ACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp TCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTTCTCTGTCAGGTAGTTaGCGATGTGCGGCTGGTTGG +
Preference number: 4 (lower is better)
Translates to: SKVPCGCGKTPDKCLNVGSLSGS*RCAAGW
Trigger: CCAACCAGCCGCACATCGTCAACTACCTGACAGAGA...ACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp TTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTACAGAAGACCCACACTAGCGTCGGGGAAGAGGCGTaGACACTTGAGAAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: LLSTSGPDLFKVQKTHTSVGEEA*TLEKQQ
Trigger: CTGCTGCTTCTCAAGTGTTCACGCCTCTTCCCCGAC...GCTAGTGTGGGTCTTCTGTACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp TCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTTCACCTCACGTCGGATaGTGTGCTGAAAGACCCCGA +
Preference number: 4 (lower is better)
Translates to: SKVPCGCGKTPDKCLNVGSPHVG*CAERPR
Trigger: TCGGGGTCTTTCAGCACATCATCCGACGTGAGGTGA...ACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp TTTCGAGGAGAGGGGCCTTGTGCTGGCTTAGGTGACTCCATGGGAGCGAGCGAGAGCGGAAGAGGTCTTTaGAGAGGATCTTCTGAATCA +
Preference number: 4 (lower is better)
Translates to: FRGEGPCAGLGDSMGASESGRGL*RGSSES
Trigger: TGATTCAGAAGATCCTCTTCAAAGACCTCTTCCGCT...CTCGCTCGCTCCCATGGAGTCACCTAAGCCAGCACAAGGCCCCTCTCCTCGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp TTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTACAGAAGACCCACACTAGCGAACTGTCTCCAGGTTaGTGTCGGGGAAGAGGCGTG +
Preference number: 4 (lower is better)
Translates to: LLSTSGPDLFKVQKTHTSELSPG*CRGRGV
Trigger: CACGCCTCTTCCCCGACAGCAACCTGGAGACAGTTC...GCTAGTGTGGGTCTTCTGTACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp GGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTGGGAGCGAAGGCCAAAACTTGCGAGACAGATaGCGGGTGTCCTCATCTGTC +
Preference number: 4 (lower is better)
Translates to: GCGKTPDKCLNVGGSEGQNLRDR*RVSSSV
Trigger: GACAGATGAGGACACCCGGCATCTGTCTCGCAAGTT...TTGGCCTTCGCTCCCACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp CTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGACTTCCAGATGTGCTTaGTCTCCTTGGACACCTGGC +
Preference number: 4 (lower is better)
Translates to: LQGPMRVWEDTGQMPKCRTSRCA*SPWTPG
Trigger: GCCAGGTGTCCAAGGAGAGCAAGCACATCTGGAAGT...CCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp GGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTGGGAGCGAAGGCCAAACTTCCAGATGTGCTTaGTCTCCTTGGACACCTGGC +
Preference number: 4 (lower is better)
Translates to: GCGKTPDKCLNVGGSEGQTSRCA*SPWTPG
Trigger: GCCAGGTGTCCAAGGAGAGCAAGCACATCTGGAAGT...TTGGCCTTCGCTCCCACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGACTCGTACAGGGTaGACTCCAACAGGTCAATGG +
Preference number: 4 (lower is better)
Translates to: HLQGPMRVWEDTGQMPKCRTRTG*TPTGQW
Trigger: CCATTGACCTGTTGGAGTCCACCCTGTACGAGTCCT...ACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTACAGCCAGCATCTCATaGCGGTTCTCGATCTTGCTG +
Preference number: 4 (lower is better)
Translates to: HLQGPMRVWEDTGQMPKCTASIS*RFSILL
Trigger: CAGCAAGATCGAGAACCGCCATGAGATGCTGGCTGT...ACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTTCAGGTAGTCCACTGTaGTCCGGTAAGGGTAGGGTG +
Preference number: 4 (lower is better)
Translates to: SKVPCGCGKTPDKCLNVGSGSPL*SGKGRV
Trigger: CACCCTACCCTTACCGGACCACAGTGGACTACCTGA...ACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp AGAGCAATAAATAATACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGAGAGGGCTCTCCTTGGACACCTaGCCCACGGTCTCACCCATG +
Preference number: 4 (lower is better)
Translates to: RAINNTQEGWGLSLSRRGLSLDT*PTVSPM
Trigger: CATGGGTGAGACCGTGGGCCAGGTGTCCAAGGAGAG...CCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTATTATTTATTGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CTGAGGAGAGCAATAAATAATACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGCTCTCCTTGGACACCTaGCCCACGGTCTCACCCATG +
Preference number: 4 (lower is better)
Translates to: LRRAINNTQEGWGLSLSRLSLDT*PTVSPM
Trigger: CATGGGTGAGACCGTGGGCCAGGTGTCCAAGGAGAG...CCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTATTATTTATTGCTCTCCTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTACAGAAGACCCACACTAGCTGTGCTTGCTCTCCTTaGACACCTGGCCCACGGTCT +
Preference number: 4 (lower is better)
Translates to: LLSTSGPDLFKVQKTHTSCACSP*TPGPRS
Trigger: AGACCGTGGGCCAGGTGTCCAAGGAGAGCAAGCACA...GCTAGTGTGGGTCTTCTGTACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp TCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTAACTTGCGAGACAGATaGCGGGTGTCCTCATCTGTC +
Preference number: 4 (lower is better)
Translates to: SKVPCGCGKTPDKCLNVGNLRDR*RVSSSV
Trigger: GACAGATGAGGACACCCGGCATCTGTCTCGCAAGTT...ACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR GCA 90 bp TCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTTGCCATCTGAGCTCTTaGCCACAGTCACCATCTCTC +
Preference number: 4 (lower is better)
Translates to: SKVPCGCGKTPDKCLNVGCHLSS*PQSPSL
Trigger: GAGAGATGGTGACTGTGGGCAAGAGCTCAGATGGCA...ACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTATCTCTTGTTGTCACTaGGGTGGTGACGGTAAGTGC +
Preference number: 4 (lower is better)
Translates to: HLQGPMRVWEDTGQMPKCISCCH*GGDGKC
Trigger: GCACTTACCGTCACCACCCCAGTGACAACAAGAGAT...ACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CTGAGGAGAGCAATAAATAATACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGAGACCACGGGGTACTTaGCGCTGCTCAGCATCTCCA +
Preference number: 4 (lower is better)
Translates to: LRRAINNTQEGWGLSLSRRPRGT*RCSASP
Trigger: TGGAGATGCTGAGCAGCGCCAAGTACCCCGTGGTCT...CCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTATTATTTATTGCTCTCCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp CTGAGGAGAGCAATAAATAATACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGTCACCTCACGTCGGATaGTGTGCTGAAAGACCCCGA +
Preference number: 4 (lower is better)
Translates to: LRRAINNTQEGWGLSLSRSPHVG*CAERPR
Trigger: TCGGGGTCTTTCAGCACATCATCCGACGTGAGGTGA...CCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTATTATTTATTGCTCTCCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp ACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTACACTTCATCTGCGCTTaGGTTCTTGTTCAGCTCCAC +
Preference number: 4 (lower is better)
Translates to: TSKVPCGCGKTPDKCLNVHFICA*VLVQLH
Trigger: GTGGAGCTGAACAAGAACTCAAGCGCAGATGAAGTG...TACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CATTTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTACAGAAGACCCACACTTGCAGCGCCGTTCGATaGCAATGTGCAGGGATGTCT +
Preference number: 4 (lower is better)
Translates to: HLLSTSGPDLFKVQKTHTCSAVR*QCAGMS
Trigger: AGACATCCCTGCACATTGCCATCGAACGGCGCTGCA...AGTGTGGGTCTTCTGTACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTACAGAAGACCCACACTAGCACAGCCAGCATCTCATaGCGGTTCTCGATCTTGCTG +
Preference number: 4 (lower is better)
Translates to: LLSTSGPDLFKVQKTHTSTASIS*RFSILL
Trigger: CAGCAAGATCGAGAACCGCCATGAGATGCTGGCTGT...GCTAGTGTGGGTCTTCTGTACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CTGAGGAGAGCAATAAATAATACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGTCAGGTAGTCCACTGTaGTCCGGTAAGGGTAGGGTG +
Preference number: 4 (lower is better)
Translates to: LRRAINNTQEGWGLSLSRSGSPL*SGKGRV
Trigger: CACCCTACCCTTACCGGACCACAGTGGACTACCTGA...CCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTATTATTTATTGCTCTCCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp TCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTGGTCGTACATCTTGGTaGCAAACTTGGTGTTCTCTC +
Preference number: 4 (lower is better)
Translates to: SKVPCGCGKTPDKCLNVGGRTSW*QTWCSL
Trigger: GAGAGAACACCAAGTTTGTCACCAAGATGTACGACC...ACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp AGAGCAATAAATAATACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGAGAGGGAGAGGCGTGAACACTTaGGAAGCAGCAGGTCGTACA +
Preference number: 4 (lower is better)
Translates to: RAINNTQEGWGLSLSRRGRGVNT*EAAGRT
Trigger: TGTACGACCTGCTGCTTCTCAAGTGTTCACGCCTCT...CCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTATTATTTATTGCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR TCA 90 bp TCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTCCAGCACAGAGTAGATaGAGTAGAGTAACTGGAAGG +
Preference number: 4 (lower is better)
Translates to: SKVPCGCGKTPDKCLNVGPAQSR*SRVTGR
Trigger: CCTTCCAGTTACTCTACTTCATCTACTCTGTGCTGG...ACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp CATTTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTACAGAAGACCCACACTCACAGACCTTCATGTTaGTGCACGGATTCAGGAGGG +
Preference number: 4 (lower is better)
Translates to: HLLSTSGPDLFKVQKTHTHRPSC*CTDSGG
Trigger: CCCTCCTGAATCCGTGCACCAACATGAAGGTCTGTG...AGTGTGGGTCTTCTGTACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TCCACCGAGAATAAACATTTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTAAGGACTCGTACAGGGTaGACTCCAACAGGTCAATGG +
Preference number: 4 (lower is better)
Translates to: STENKHLLSTSGPDLFKVRTRTG*TPTGQW
Trigger: CCATTGACCTGTTGGAGTCCACCCTGTACGAGTCCT...TACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAAATGTTTATTCTCGGTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CCA 90 bp TCCACCGAGAATAAACATTTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTATTGCGGAAAGCGCCCTaGAACTTCATACGCAGGTTT +
Preference number: 4 (lower is better)
Translates to: STENKHLLSTSGPDLFKVLRKAP*NFIRRF
Trigger: AAACCTGCGTATGAAGTTCCAGGGCGCTTTCCGCAA...TACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAAATGTTTATTCTCGGTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAGCGGGTTGGGAACCCCCTaGCGGAAAGCGCCCTGGAAC +
Preference number: 5 (lower is better)
Translates to: GQVPAAGGLLPPHFPEESGLGTP*RKAPWN
Trigger: GTTCCAGGGCGCTTTCCGCAAGGGGGTTCCCAACCC...GCTCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCTGGGGTGCAGGAGCTTaGGGGCTCTGTGGCTGCTTC +
Preference number: 5 (lower is better)
Translates to: VGAAASLHELQPWPGSSRWGAGA*GLCGCF
Trigger: GAAGCAGCCACAGAGCCCCAAAGCTCCTGCACCCCA...GCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTAGGTTCAGCAGCGCCTaGGGCAGGCAGGTCTTCCCC +
Preference number: 5 (lower is better)
Translates to: ELQPWPGSSRGWTPATPFRFSSA*GRQVFP
Trigger: GGGGAAGACCTGCCTGCCCAAGGCGCTGCTGAACCT...AAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAACGATGTGCGGCTGGTaGGTGCAGGCTGCCAGGGAC +
Preference number: 5 (lower is better)
Translates to: GRSELQRPCMSFSPGQVPTMCGW*VQAARD
Trigger: GTCCCTGGCAGCCTGCACCAACCAGCCGCACATCGT...TGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS CCA 90 bp GGGAACCCCCTTGCGGAAAGCGCCCTGGAACTTCATACGCAGGTTTaGACGTCCATCGCCAGGGCCAGCAGGGCGGCTAGCATCCACCGG +
Preference number: 5 (lower is better)
Translates to: GNPLAESALELHTQV*TSIARASRAASIHR
Trigger: CCGGTGGATGCTAGCCGCCCTGCTGGCCCTGGCGATGGACGTCCAAACCTGCGTATGAAGTTCCAGGGCGCTTTCCGCAAGGGGGTTCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp TCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCATGTGCTTGCTCTCCTaGGACACCTGGCCCACGGTC +
Preference number: 5 (lower is better)
Translates to: SLHELQPWPGSSRGWTPAMCLLS*DTWPTV
Trigger: GACCGTGGGCCAGGTGTCCAAGGAGAGCAAGCACAT...GGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS GCA 90 bp TGCCGGTGCGCTCCGCAATGTCCAGCAACACCGGGATGGTGTCGTTaGGCCCGTTGCTTAGGTTCAGCAGCGCCTTGGGCAGGCAGGTCT +
Preference number: 5 (lower is better)
Translates to: CRCAPQCPATPGWCR*ARCLGSAAPWAGRS
Trigger: AGACCTGCCTGCCCAAGGCGCTGCTGAACCTAAGCAACGGGCGCAACGACACCATCCCGGTGTTGCTGGACATTGCGGAGCGCACCGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAGCACCGGGATGGTGTCGTaGCGCCCGTTGCTTAGGTTC +
Preference number: 5 (lower is better)
Translates to: GQVPAAGGLLPPHFPEESTGMVS*RPLLRF
Trigger: GAACCTAAGCAACGGGCGCAACGACACCATCCCGGT...GCTCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTCCGATCTTGCCTGTCTaGGCAGCCATCATGAGAGGC +
Preference number: 5 (lower is better)
Translates to: ELQRPCMSFSPGQVPAAGPILPV*AAIMRG
Trigger: GCCTCTCATGATGGCTGCCAAGACAGGCAAGATCGG...ACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAGCAAGACCACGGGGTACTaGGCGCTGCTCAGCATCTCC +
Preference number: 5 (lower is better)
Translates to: GQVPAAGGLLPPHFPEESKTTGY*ALLSIS
Trigger: GGAGATGCTGAGCAGCGCCAAGTACCCCGTGGTCTT...GCTCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS TCA 90 bp CACCTCGTCCACCCTGAAGCACCACCTGCGGTCCGGAGTGCCATCTaGGCTCTTGCCCACAGTCACCATCTCTCCGGAGCGGAAGGCCTT +
Preference number: 5 (lower is better)
Translates to: HLVHPEAPPAVRSAI*ALAHSHHLSGAEGL
Trigger: AAGGCCTTCCGCTCCGGAGAGATGGTGACTGTGGGCAAGAGCTCAGATGGCACTCCGGACCGCAGGTGGTGCTTCAGGGTGGACGAGGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 90 bp CACGCATGTTGCCGGTGCGCTCCGCAATGTCCAGCAACACCGGGATaGTGTCGTTGCGCCCGTTGCTTAGGTTCAGCAGCGCCTTGGGCA +
Preference number: 5 (lower is better)
Translates to: HACCRCAPQCPATPG*CRCARCLGSAAPWA
Trigger: TGCCCAAGGCGCTGCTGAACCTAAGCAACGGGCGCAACGACACCATCCCGGTGTTGCTGGACATTGCGGAGCGCACCGGCAACATGCGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp TACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGAGAGGGGCCTTGTGCTGGCTGGGTTGGGAACCCCCTaGCGGAAAGCGCCCTGGAAC +
Preference number: 5 (lower is better)
Translates to: YTRGMGPEPFEERGLVLAGLGTP*RKAPWN
Trigger: GTTCCAGGGCGCTTTCCGCAAGGGGGTTCCCAACCC...AGCCAGCACAAGGCCCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp TTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTACCGGGATGGTGTCGTaGCGCCCGTTGCTTAGGTTC +
Preference number: 5 (lower is better)
Translates to: FSPGQVPAAGGLLPPHFPTGMVS*RPLLRF
Trigger: GAACCTAAGCAACGGGCGCAACGACACCATCCCGGT...AGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp CGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGATGAATTCACGCATGTaGCCGGTGCGCTCCGCAATG +
Preference number: 5 (lower is better)
Translates to: RPCMSFSPGQVPAAGGLLMNSRM*PVRSAM
Trigger: CATTGCGGAGCGCACCGGCAACATGCGTGAATTCAT...CAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCGTGTTCTCTCGGGTGTaGTCGGCGATGGCCACCAGC +
Preference number: 5 (lower is better)
Translates to: AGQICGRSELQRPCMSFSVFSRV*SAMATS
Trigger: GCTGGTGGCCATCGCCGACAACACCCGAGAGAACAC...GCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp CTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAGCCCAGTCCTTGAACTaGCGAGACAGATGCCGGGTG +
Preference number: 5 (lower is better)
Translates to: LARFQPRVDSCHPIFLRRAQSLN*RDRCRV
Trigger: CACCCGGCATCTGTCTCGCAAGTTCAAGGACTGGGC...TCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS CCA 90 bp CCGTCCTCCACTTGGGAGCGTAGCCCTGCTGGTGGCCGTCACAGTTaGGGTTCCCTAGGTTATCCAGGGGTACCACCACTTCATCTGCGC +
Preference number: 5 (lower is better)
Translates to: PSSTWERSPAGGRHS*GSLGYPGVPPLHLR
Trigger: GCGCAGATGAAGTGGTGGTACCCCTGGATAACCTAGGGAACCCCAACTGTGACGGCCACCAGCAGGGCTACGCTCCCAAGTGGAGGACGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GCCCTCACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTATGGGGTGCAGGAGCTTaGGGGCTCTGTGGCTGCTTC +
Preference number: 5 (lower is better)
Translates to: ALTSKVPCGCGKTPDKCLWGAGA*GLCGCF
Trigger: GAAGCAGCCACAGAGCCCCAAAGCTCCTGCACCCCA...TAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGTGAGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp TACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGAGAGGGGCCTTGTGCTGGCTGTGTCGTTGCGCCCGTaGCTTAGGTTCAGCAGCGCC +
Preference number: 5 (lower is better)
Translates to: YTRGMGPEPFEERGLVLAVSLRP*LRFSSA
Trigger: GGCGCTGCTGAACCTAAGCAACGGGCGCAACGACAC...AGCCAGCACAAGGCCCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp CGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGTGGCGGTTCTCGATCTaGCTGTTGTACACCAGGATC +
Preference number: 5 (lower is better)
Translates to: RPCMSFSPGQVPAAGGLLWRFSI*LLYTRI
Trigger: GATCCTGGTGTACAACAGCAAGATCGAGAACCGCCA...CAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS CCA 90 bp TCGCTGTCGCGGCACGCAGGATACGTGGGCACCGTGCAGTTGCTCTaGTCCTCGTCACAGACCTTCATGTTGGTGCACGGATTCAGGAGG +
Preference number: 5 (lower is better)
Translates to: SLSRHAGYVGTVQLL*SSSQTFMLVHGFRR
Trigger: CCTCCTGAATCCGTGCACCAACATGAAGGTCTGTGACGAGGACCAGAGCAACTGCACGGTGCCCACGTATCCTGCGTGCCGCGACAGCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp AGGGCTGCAGCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAACAGGTCAATGGGGTaGGGAACCCCCTTGCGGAAA +
Preference number: 5 (lower is better)
Translates to: RAAAGQICGRSELQRPCMNRSMG*GTPLRK
Trigger: TTTCCGCAAGGGGGTTCCCAACCCCATTGACCTGTT...CATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGCTGCAGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GCCCTCACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTATCCATGGGCGCTTTCTaGGGCCCAGGCACTACTGAG +
Preference number: 5 (lower is better)
Translates to: ALTSKVPCGCGKTPDKCLSMGAF*GPGTTE
Trigger: CTCAGTAGTGCCTGGGCCCAAGAAAGCGCCCATGGA...TAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGTGAGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCAGAACTGTCTCCAGGTaGCTGTCGGGGAAGAGGCGT +
Preference number: 5 (lower is better)
Translates to: AGQICGRSELQRPCMSFSRTVSR*LSGKRR
Trigger: ACGCCTCTTCCCCGACAGCAACCTGGAGACAGTTCT...GCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCTTCTCGATCTTGCTGTaGTACACCAGGATCTCCAGC +
Preference number: 5 (lower is better)
Translates to: VGAAASLHELQPWPGSSRFSILL*YTRISS
Trigger: GCTGGAGATCCTGGTGTACAACAGCAAGATCGAGAA...GCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp AGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCTGGCGGTTCTCGATCTaGCTGTTGTACACCAGGATC +
Preference number: 5 (lower is better)
Translates to: RSELQRPCMSFSPGQVPAWRFSI*LLYTRI
Trigger: GATCCTGGTGTACAACAGCAAGATCGAGAACCGCCA...GGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCTGGCCAGGTTCCAGCCGCGGGTCCACTTCATCTGCGCTaGAGTTCTTGTTCAGCTCCA +
Preference number: 5 (lower is better)
Translates to: ELQRPCMSFSPGQVPAAGPLHLR*SSCSAP
Trigger: TGGAGCTGAACAAGAACTCAAGCGCAGATGAAGTGG...ACCCGCGGCTGGAACCTGGCCAGGGCTGAAGCTCATGCAGGGACGCTGCAGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS GCA 90 bp AGGTCTCGCTGTCGCGGCACGCAGGATACGTGGGCACCGTGCAGTTaGTCTGGTCCTCGTCACAGACCTTCATGTTGGTGCACGGATTCA +
Preference number: 5 (lower is better)
Translates to: RSRCRGTQDTWAPCS*SGPRHRPSCWCTDS
Trigger: TGAATCCGTGCACCAACATGAAGGTCTGTGACGAGGACCAGAGCAACTGCACGGTGCCCACGTATCCTGCGTGCCGCGACAGCGAGACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 90 bp TCCAACAGGTCAATGGGGTTGGGAACCCCCTTGCGGAAAGCGCCCTaGAACTTCATACGCAGGTTTGGACGTCCATCGCCAGGGCCAGCA +
Preference number: 5 (lower is better)
Translates to: SNRSMGLGTPLRKAP*NFIRRFGRPSPGPA
Trigger: TGCTGGCCCTGGCGATGGACGTCCAAACCTGCGTATGAAGTTCCAGGGCGCTTTCCGCAAGGGGGTTCCCAACCCCATTGACCTGTTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 90 bp TGGGCGCTTTCTTGGGCCCAGGCACTACTGAGGACTCGTACAGGGTaGACTCCAACAGGTCAATGGGGTTGGGAACCCCCTTGCGGAAAG +
Preference number: 5 (lower is better)
Translates to: WALSWAQALLRTRTG*TPTGQWGWEPPCGK
Trigger: CTTTCCGCAAGGGGGTTCCCAACCCCATTGACCTGTTGGAGTCCACCCTGTACGAGTCCTCAGTAGTGCCTGGGCCCAAGAAAGCGCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 90 bp CCCGTGGACGGCTCCCGGAACTCCTCATCAGTCAGGCGCTTCTTGTaGGTCAACAAGAAGGAGAGCAGTCCATCTAGGTCCGCAGTGGAG +
Preference number: 5 (lower is better)
Translates to: PVDGSRNSSSVRRFL*VNKKESSPSRSAVE
Trigger: CTCCACTGCGGACCTAGATGGACTGCTCTCCTTCTTGTTGACCCACAAGAAGCGCCTGACTGATGAGGAGTTCCGGGAGCCGTCCACGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTGGGAGCGAAGGCCAAAGGTTCAGCAGCGCCTaGGGCAGGCAGGTCTTCCCC +
Preference number: 5 (lower is better)
Translates to: GCGKTPDKCLNVGGSEGQRFSSA*GRQVFP
Trigger: GGGGAAGACCTGCCTGCCCAAGGCGCTGCTGAACCT...TTGGCCTTCGCTCCCACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp CGAGGAGAGGGGCCTTGTGCTGGCTTAGGTGACTCCATGGGAGCGAGCGAGACAATGAATTCACGCATGTaGCCGGTGCGCTCCGCAATG +
Preference number: 5 (lower is better)
Translates to: RGEGPCAGLGDSMGASETMNSRM*PVRSAM
Trigger: CATTGCGGAGCGCACCGGCAACATGCGTGAATTCAT...TGTCTCGCTCGCTCCCATGGAGTCACCTAAGCCAGCACAAGGCCCCTCTCCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp AGGGCTGCAGCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAAGAGGCGTGAACACTaGAGAAGCAGCAGGTCGTAC +
Preference number: 5 (lower is better)
Translates to: RAAAGQICGRSELQRPCMKRREH*RSSRSY
Trigger: GTACGACCTGCTGCTTCTCAAGTGTTCACGCCTCTT...CATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGCTGCAGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp AGGGCTGCAGCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGGGCGAAAGGCCATCATaGTTGAGAACTGTCTCCAGG +
Preference number: 5 (lower is better)
Translates to: RAAAGQICGRSELQRPCMGERPS*LRTVSR
Trigger: CCTGGAGACAGTTCTCAACAATGATGGCCTTTCGCC...CATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGCTGCAGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GCCCTCACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTACCGATCTTGCCTGTCTaGGCAGCCATCATGAGAGGC +
Preference number: 5 (lower is better)
Translates to: ALTSKVPCGCGKTPDKCLPILPV*AAIMRG
Trigger: GCCTCTCATGATGGCTGCCAAGACAGGCAAGATCGG...TAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGTGAGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS CCA 90 bp CACTGGGGTGGTGACGGTAAGTGCCGTAGTCGAACAAGGAATCCATaGGCGCTTTCTTGGGCCCAGGCACTACTGAGGACTCGTACAGGG +
Preference number: 5 (lower is better)
Translates to: HWGGDGKCRSRTRNP*ALSWAQALLRTRTG
Trigger: CCCTGTACGAGTCCTCAGTAGTGCCTGGGCCCAAGAAAGCGCCCATGGATTCCTTGTTCGACTACGGCACTTACCGTCACCACCCCAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp CACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTGTGTCGTTGCGCCCGTaGCTTAGGTTCAGCAGCGCC +
Preference number: 5 (lower is better)
Translates to: HLQGPMRVWEDTGQMPKCVSLRP*LRFSSA
Trigger: GGCGCTGCTGAACCTAAGCAACGGGCGCAACGACAC...ACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTGGGAGCGAAGGCCAAGTGTTCTCTCGGGTGTaGTCGGCGATGGCCACCAGC +
Preference number: 5 (lower is better)
Translates to: GCGKTPDKCLNVGGSEGQVFSRV*SAMATS
Trigger: GCTGGTGGCCATCGCCGACAACACCCGAGAGAACAC...TTGGCCTTCGCTCCCACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTGGGAGCATGTGCTTGCTCTCCTaGGACACCTGGCCCACGGTC +
Preference number: 5 (lower is better)
Translates to: VPCGCGKTPDKCLNVGGSMCLLS*DTWPTV
Trigger: GACCGTGGGCCAGGTGTCCAAGGAGAGCAAGCACAT...GCTCCCACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp TTTCGAGGAGAGGGGCCTTGTGCTGGCTTAGGTGACTCCATGGGAGCGAGCGAGGTGCCATCTGAGCTCTaGCCCACAGTCACCATCTCT +
Preference number: 5 (lower is better)
Translates to: FRGEGPCAGLGDSMGASEVPSEL*PTVTIS
Trigger: AGAGATGGTGACTGTGGGCAAGAGCTCAGATGGCAC...CTCGCTCGCTCCCATGGAGTCACCTAAGCCAGCACAAGGCCCCTCTCCTCGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS TCA 90 bp GTCGAACAAGGAATCCATGGGCGCTTTCTTGGGCCCAGGCACTACTaGGGACTCGTACAGGGTGGACTCCAACAGGTCAATGGGGTTGGG +
Preference number: 5 (lower is better)
Translates to: VEQGIHGRFLGPRHY*GLVQGGLQQVNGVG
Trigger: CCCAACCCCATTGACCTGTTGGAGTCCACCCTGTACGAGTCCTCAGTAGTGCCTGGGCCCAAGAAAGCGCCCATGGATTCCTTGTTCGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 90 bp CTACTGAGGACTCGTACAGGGTGGACTCCAACAGGTCAATGGGGTTaGGAACCCCCTTGCGGAAAGCGCCCTGGAACTTCATACGCAGGT +
Preference number: 5 (lower is better)
Translates to: LLRTRTGWTPTGQWG*EPPCGKRPGTSYAG
Trigger: ACCTGCGTATGAAGTTCCAGGGCGCTTTCCGCAAGGGGGTTCCCAACCCCATTGACCTGTTGGAGTCCACCCTGTACGAGTCCTCAGTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 90 bp CAGGCACTACTGAGGACTCGTACAGGGTGGACTCCAACAGGTCAATaGGGTTGGGAACCCCCTTGCGGAAAGCGCCCTGGAACTTCATAC +
Preference number: 5 (lower is better)
Translates to: QALLRTRTGWTPTGQ*GWEPPCGKRPGTSY
Trigger: GTATGAAGTTCCAGGGCGCTTTCCGCAAGGGGGTTCCCAACCCCATTGACCTGTTGGAGTCCACCCTGTACGAGTCCTCAGTAGTGCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp TTCAGCCCTGGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTAGCAGGTCGTACATCTaGGTGACAAACTTGGTGTTC +
Preference number: 5 (lower is better)
Translates to: FSPGQVPAAGGLLPPHFPSRSYI*VTNLVF
Trigger: GAACACCAAGTTTGTCACCAAGATGTACGACCTGCT...AGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCCAGGGCTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTGGGAGCGAAGGCCAAAAGACCACGGGGTACTaGGCGCTGCTCAGCATCTCC +
Preference number: 5 (lower is better)
Translates to: GCGKTPDKCLNVGGSEGQKTTGY*ALLSIS
Trigger: GGAGATGCTGAGCAGCGCCAAGTACCCCGTGGTCTT...TTGGCCTTCGCTCCCACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp TTTCGAGGAGAGGGGCCTTGTGCTGGCTTAGGTGACTCCATGGGAGCGAGCGAGAACTTCCAGATGTGCTaGCTCTCCTTGGACACCTGG +
Preference number: 5 (lower is better)
Translates to: FRGEGPCAGLGDSMGASENFQMC*LSLDTW
Trigger: CCAGGTGTCCAAGGAGAGCAAGCACATCTGGAAGTT...CTCGCTCGCTCCCATGGAGTCACCTAAGCCAGCACAAGGCCCCTCTCCTCGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GCAGGTCAGATCTGTGGCAGGTCGGAGCTGCAGCGTCCCTGCATGAGCTTCAGCCCACTTCATCTGCGCTaGAGTTCTTGTTCAGCTCCA +
Preference number: 5 (lower is better)
Translates to: AGQICGRSELQRPCMSFSPLHLR*SSCSAP
Trigger: TGGAGCTGAACAAGAACTCAAGCGCAGATGAAGTGG...GCTGAAGCTCATGCAGGGACGCTGCAGCTCCGACCTGCCACAGATCTGACCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS CCA 90 bp GACGGTAAGTGCCGTAGTCGAACAAGGAATCCATGGGCGCTTTCTTaGGCCCAGGCACTACTGAGGACTCGTACAGGGTGGACTCCAACA +
Preference number: 5 (lower is better)
Translates to: DGKCRSRTRNPWALS*AQALLRTRTGWTPT
Trigger: TGTTGGAGTCCACCCTGTACGAGTCCTCAGTAGTGCCTGGGCCCAAGAAAGCGCCCATGGATTCCTTGTTCGACTACGGCACTTACCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp CTGAGGAGAGCAATAAATAATACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGACGATGTGCGGCTGGTaGGTGCAGGCTGCCAGGGAC +
Preference number: 5 (lower is better)
Translates to: LRRAINNTQEGWGLSLSRTMCGW*VQAARD
Trigger: GTCCCTGGCAGCCTGCACCAACCAGCCGCACATCGT...CCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTATTATTTATTGCTCTCCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS GCA 90 bp CCTTTCTCCTCCATCTCTTGTTGTCACTGGGGTGGTGACGGTAAGTaGCGTAGTCGAACAAGGAATCCATGGGCGCTTTCTTGGGCCCAG +
Preference number: 5 (lower is better)
Translates to: PFSSISCCHWGGDGK*RSRTRNPWALSWAQ
Trigger: CTGGGCCCAAGAAAGCGCCCATGGATTCCTTGTTCGACTACGGCACTTACCGTCACCACCCCAGTGACAACAAGAGATGGAGGAGAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp TTTCGAGGAGAGGGGCCTTGTGCTGGCTTAGGTGACTCCATGGGAGCGAGCGAGTCTCTGAAGGGCGAGTaGATGAATTCACGCATGTTG +
Preference number: 5 (lower is better)
Translates to: FRGEGPCAGLGDSMGASESLKGE*MNSRML
Trigger: CAACATGCGTGAATTCATCAACTCGCCCTTCAGAGA...CTCGCTCGCTCCCATGGAGTCACCTAAGCCAGCACAAGGCCCCTCTCCTCGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS CCA 90 bp GTGGCTGCTTCTCCACGACCTTTCTCCTCCATCTCTTGTTGTCACTaGGGTGGTGACGGTAAGTGCCGTAGTCGAACAAGGAATCCATGG +
Preference number: 5 (lower is better)
Translates to: VAASPRPFSSISCCH*GGDGKCRSRTRNPW
Trigger: CCATGGATTCCTTGTTCGACTACGGCACTTACCGTCACCACCCCAGTGACAACAAGAGATGGAGGAGAAAGGTCGTGGAGAAGCAGCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp AGAGCAATAAATAATACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGAGAGGGTCCCCCTCAAACAGATaGGCCAGGGAAGAGAGGGGG +
Preference number: 5 (lower is better)
Translates to: RAINNTQEGWGLSLSRRGSPSNR*AREERG
Trigger: CCCCCTCTCTTCCCTGGCCAATCTGTTTGAGGGGGA...CCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTATTATTTATTGCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp CTGAGGAGAGCAATAAATAATACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGTCCCCCTCAAACAGATaGGCCAGGGAAGAGAGGGGG +
Preference number: 5 (lower is better)
Translates to: LRRAINNTQEGWGLSLSRSPSNR*AREERG
Trigger: CCCCCTCTCTTCCCTGGCCAATCTGTTTGAGGGGGA...CCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTATTATTTATTGCTCTCCTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp CACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAAGAGGCGTGAACACTaGAGAAGCAGCAGGTCGTAC +
Preference number: 5 (lower is better)
Translates to: HLQGPMRVWEDTGQMPKCKRREH*RSSRSY
Trigger: GTACGACCTGCTGCTTCTCAAGTGTTCACGCCTCTT...ACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp TTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTACAGAAGACCCACACTAGCAGAACTGTCTCCAGGTaGCTGTCGGGGAAGAGGCGT +
Preference number: 5 (lower is better)
Translates to: LLSTSGPDLFKVQKTHTSRTVSR*LSGKRR
Trigger: ACGCCTCTTCCCCGACAGCAACCTGGAGACAGTTCT...GCTAGTGTGGGTCTTCTGTACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp CATTTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTACAGAAGACCCACACTGCCCAGTCCTTGAACTaGCGAGACAGATGCCGGGTG +
Preference number: 5 (lower is better)
Translates to: HLLSTSGPDLFKVQKTHTAQSLN*RDRCRV
Trigger: CACCCGGCATCTGTCTCGCAAGTTCAAGGACTGGGC...AGTGTGGGTCTTCTGTACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp GGCCAGGTTCCAGCCGCGGGTGGACTCCTGCCACCCCATTTTCCTGAGGAGAGCTTCGTGAACAAGTCTTaGATACTGGTAAAGAAGAAC +
Preference number: 5 (lower is better)
Translates to: GQVPAAGGLLPPHFPEESFVNKS*ILVKKN
Trigger: GTTCTTCTTTACCAGTATCAAAGACTTGTTCACGAA...GCTCTCCTCAGGAAAATGGGGTGGCAGGAGTCCACCCGCGGCTGGAACCTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp TCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTGGCGAAAGGCCATCATaGTTGAGAACTGTCTCCAGG +
Preference number: 5 (lower is better)
Translates to: SKVPCGCGKTPDKCLNVGGERPS*LRTVSR
Trigger: CCTGGAGACAGTTCTCAACAATGATGGCCTTTCGCC...ACCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp CTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAGGTTCTCGATCTTGCTGTaGTACACCAGGATCTCCAGC +
Preference number: 5 (lower is better)
Translates to: LQGPMRVWEDTGQMPKCRFSILL*YTRISS
Trigger: GCTGGAGATCCTGGTGTACAACAGCAAGATCGAGAA...CCTACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp AGAGCAATAAATAATACACAAGAGGGATGGGGCCTGAGCCTTTCGAGGAGAGGGTCTGCGCTTGAGTTCTaGTTCAGCTCCACTACGCGG +
Preference number: 5 (lower is better)
Translates to: RAINNTQEGWGLSLSRRGSALEF*FSSTTR
Trigger: CCGCGTAGTGGAGCTGAACAAGAACTCAAGCGCAGA...CCCTCTCCTCGAAAGGCTCAGGCCCCATCCCTCTTGTGTATTATTTATTGCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp ACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTAAGCAGGTCGTACATCTaGGTGACAAACTTGGTGTTC +
Preference number: 5 (lower is better)
Translates to: TSKVPCGCGKTPDKCLNVSRSYI*VTNLVF
Trigger: GAACACCAAGTTTGTCACCAAGATGTACGACCTGCT...TACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp TCCACCGAGAATAAACATTTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTATCTGCGCTTGAGTTCTaGTTCAGCTCCACTACGCGG +
Preference number: 5 (lower is better)
Translates to: STENKHLLSTSGPDLFKVSALEF*FSSTTR
Trigger: CCGCGTAGTGGAGCTGAACAAGAACTCAAGCGCAGA...TACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAAATGTTTATTCTCGGTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS TCA 90 bp ATCATTGTTGAGAACTGTCTCCAGGTTGCTGTCGGGGAAGAGGCGTaGACACTTGAGAAGCAGCAGGTCGTACATCTTGGTGACAAACTT +
Preference number: 5 (lower is better)
Translates to: IIVENCLQVAVGEEA*TLEKQQVVHLGDKL
Trigger: AAGTTTGTCACCAAGATGTACGACCTGCTGCTTCTCAAGTGTTCACGCCTCTTCCCCGACAGCAACCTGGAGACAGTTCTCAACAATGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp TCCACCGAGAATAAACATTTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTAAACTTCCAGATGTGCTaGCTCTCCTTGGACACCTGG +
Preference number: 5 (lower is better)
Translates to: STENKHLLSTSGPDLFKVNFQMC*LSLDTW
Trigger: CCAGGTGTCCAAGGAGAGCAAGCACATCTGGAAGTT...TACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAAATGTTTATTCTCGGTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp TCCACCGAGAATAAACATTTATTGAGCACCAGCGGCCCCGATCTCTTCAAAGTATCTCTGAAGGGCGAGTaGATGAATTCACGCATGTTG +
Preference number: 5 (lower is better)
Translates to: STENKHLLSTSGPDLFKVSLKGE*MNSRML
Trigger: CAACATGCGTGAATTCATCAACTCGCCCTTCAGAGA...TACTTTGAAGAGATCGGGGCCGCTGGTGCTCAATAAATGTTTATTCTCGGTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS-3UTR CAA 90 bp ACCTCCAAGGTCCCATGCGGGTGTGGGAAGACACCGGACAAATGCCTAAATGTATTCGTGAACAAGTCTTaGATACTGGTAAAGAAGAAC +
Preference number: 5 (lower is better)
Translates to: TSKVPCGCGKTPDKCLNVFVNKS*ILVKKN
Trigger: GTTCTTCTTTACCAGTATCAAAGACTTGTTCACGAA...TACATTTAGGCATTTGTCCGGTGTCTTCCCACACCCGCATGGGACCTTGGAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071968.9
ENSMUST00000112225.8
CDS CAA 72 bp GTGTCGTTGCGCCCGTTGCTTAGGTTCAGCAGCGCCTaGGGCAGGCAGGTCTTCCCCGTGGACGGCTCCCGG +
Preference number: 6 (lower is better)
Translates to: VSLRPLLRFSSA*GRQVFPVDGSR
Trigger: CCGGGAGCCGTCCACGGGGAAGACCTGCCTGCCCAAGGCGCTGCTGAACCTAAGCAACGGGCGCAACGACAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 72 bp GGTTCAGCAGCGCCTTGGGCAGGCAGGTCTTCCCCGTaGACGGCTCCCGGAACTCCTCATCAGTCAGGCGCT +
Preference number: 6 (lower is better)
Translates to: GSAAPWAGRSSP*TAPGTPHQSGA
Trigger: AGCGCCTGACTGATGAGGAGTTCCGGGAGCCGTCCACGGGGAAGACCTGCCTGCCCAAGGCGCTGCTGAACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 72 bp TGTCGTTGCGCCCGTTGCTTAGGTTCAGCAGCGCCTTaGGCAGGCAGGTCTTCCCCGTGGACGGCTCCCGGA +
Preference number: 6 (lower is better)
Translates to: CRCARCLGSAAP*AGRSSPWTAPG
Trigger: TCCGGGAGCCGTCCACGGGGAAGACCTGCCTGCCCAAGGCGCTGCTGAACCTAAGCAACGGGCGCAACGACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 90 bp ACCGGGATGGTGTCGTTGCGCCCGTTGCTTAGGTTCAGCAGCGCCTaGGGCAGGCAGGTCTTCCCCGTGGACGGCTCCCGGAACTCCTCA +
Preference number: 6 (lower is better)
Translates to: TGMVSLRPLLRFSSA*GRQVFPVDGSRNSS
Trigger: TGAGGAGTTCCGGGAGCCGTCCACGGGGAAGACCTGCCTGCCCAAGGCGCTGCTGAACCTAAGCAACGGGCGCAACGACACCATCCCGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 90 bp TTGCCGGTGCGCTCCGCAATGTCCAGCAACACCGGGATGGTGTCGTaGCGCCCGTTGCTTAGGTTCAGCAGCGCCTTGGGCAGGCAGGTC +
Preference number: 6 (lower is better)
Translates to: LPVRSAMSSNTGMVS*RPLLRFSSALGRQV
Trigger: GACCTGCCTGCCCAAGGCGCTGCTGAACCTAAGCAACGGGCGCAACGACACCATCCCGGTGTTGCTGGACATTGCGGAGCGCACCGGCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS TCA 72 bp CACCCTGAAGCACCACCTGCGGTCCGGAGTGCCATCTaGGCTCTTGCCCACAGTCACCATCTCTCCGGAGCG +
Preference number: 6 (lower is better)
Translates to: HPEAPPAVRSAI*ALAHSHHLSGA
Trigger: CGCTCCGGAGAGATGGTGACTGTGGGCAAGAGCTCAGATGGCACTCCGGACCGCAGGTGGTGCTTCAGGGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS GCA 72 bp CGGCTCCCTGGGCCACCAGCAGCTCCACGTAGTGCTTaGAGCGCCGTTCGATGGCAATGTGCAGGGATGTCT +
Preference number: 6 (lower is better)
Translates to: RLPGPPAAPRSA*SAVRWQCAGMS
Trigger: AGACATCCCTGCACATTGCCATCGAACGGCGCTGCAAGCACTACGTGGAGCTGCTGGTGGCCCAGGGAGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112225.8
CDS GCA 72 bp AGCACCACCTGCGGTCCGGAGTGCCATCTGAGCTCTTaGCCACAGTCACCATCTCTCCGGAGCGGAAGGCCT +
Preference number: 6 (lower is better)
Translates to: STTCGPECHLSS*PQSPSLRSGRP
Trigger: AGGCCTTCCGCTCCGGAGAGATGGTGACTGTGGGCAAGAGCTCAGATGGCACTCCGGACCGCAGGTGGTGCT
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 72 bp CTTGCGGAAAGCGCCCTGGAACTTCATACGCAGGTTTaGACGTCCATCGCCAGGGCCAGCAGGGCGGCTAGC +
Preference number: 6 (lower is better)
Translates to: LAESALELHTQV*TSIARASRAAS
Trigger: GCTAGCCGCCCTGCTGGCCCTGGCGATGGACGTCCAAACCTGCGTATGAAGTTCCAGGGCGCTTTCCGCAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 72 bp TGCCGGTGCGCTCCGCAATGTCCAGCAACACCGGGATaGTGTCGTTGCGCCCGTTGCTTAGGTTCAGCAGCG +
Preference number: 6 (lower is better)
Translates to: CRCAPQCPATPG*CRCARCLGSAA
Trigger: CGCTGCTGAACCTAAGCAACGGGCGCAACGACACCATCCCGGTGTTGCTGGACATTGCGGAGCGCACCGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp CGCTCCGCAATGTCCAGCAACACCGGGATGGTGTCGTaGCGCCCGTTGCTTAGGTTCAGCAGCGCCTTGGGC +
Preference number: 6 (lower is better)
Translates to: RSAMSSNTGMVS*RPLLRFSSALG
Trigger: GCCCAAGGCGCTGCTGAACCTAAGCAACGGGCGCAACGACACCATCCCGGTGTTGCTGGACATTGCGGAGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS GCA 72 bp TGTCCAGCAACACCGGGATGGTGTCGTTGCGCCCGTTaGTTAGGTTCAGCAGCGCCTTGGGCAGGCAGGTCT +
Preference number: 6 (lower is better)
Translates to: CPATPGWCRCAR*LGSAAPWAGRS
Trigger: AGACCTGCCTGCCCAAGGCGCTGCTGAACCTAAGCAACGGGCGCAACGACACCATCCCGGTGTTGCTGGACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS GCA 72 bp GCTCCGCAATGTCCAGCAACACCGGGATGGTGTCGTTaGGCCCGTTGCTTAGGTTCAGCAGCGCCTTGGGCA +
Preference number: 6 (lower is better)
Translates to: APQCPATPGWCR*ARCLGSAAPWA
Trigger: TGCCCAAGGCGCTGCTGAACCTAAGCAACGGGCGCAACGACACCATCCCGGTGTTGCTGGACATTGCGGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp ATGTCCAGCAACACCGGGATGGTGTCGTTGCGCCCGTaGCTTAGGTTCAGCAGCGCCTTGGGCAGGCAGGTC +
Preference number: 6 (lower is better)
Translates to: MSSNTGMVSLRP*LRFSSALGRQV
Trigger: GACCTGCCTGCCCAAGGCGCTGCTGAACCTAAGCAACGGGCGCAACGACACCATCCCGGTGTTGCTGGACAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS GCA 72 bp TGTCGCGGCACGCAGGATACGTGGGCACCGTGCAGTTaGTCTGGTCCTCGTCACAGACCTTCATGTTGGTGC +
Preference number: 6 (lower is better)
Translates to: CRGTQDTWAPCS*SGPRHRPSCWC
Trigger: GCACCAACATGAAGGTCTGTGACGAGGACCAGAGCAACTGCACGGTGCCCACGTATCCTGCGTGCCGCGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 72 bp CTGAGGACTCGTACAGGGTGGACTCCAACAGGTCAATaGGGTTGGGAACCCCCTTGCGGAAAGCGCCCTGGA +
Preference number: 6 (lower is better)
Translates to: LRTRTGWTPTGQ*GWEPPCGKRPG
Trigger: TCCAGGGCGCTTTCCGCAAGGGGGTTCCCAACCCCATTGACCTGTTGGAGTCCACCCTGTACGAGTCCTCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 72 bp CGGCACGCAGGATACGTGGGCACCGTGCAGTTGCTCTaGTCCTCGTCACAGACCTTCATGTTGGTGCACGGA +
Preference number: 6 (lower is better)
Translates to: RHAGYVGTVQLL*SSSQTFMLVHG
Trigger: TCCGTGCACCAACATGAAGGTCTGTGACGAGGACCAGAGCAACTGCACGGTGCCCACGTATCCTGCGTGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp CTGTCGCGGCACGCAGGATACGTGGGCACCGTGCAGTaGCTCTGGTCCTCGTCACAGACCTTCATGTTGGTG +
Preference number: 6 (lower is better)
Translates to: LSRHAGYVGTVQ*LWSSSQTFMLV
Trigger: CACCAACATGAAGGTCTGTGACGAGGACCAGAGCAACTGCACGGTGCCCACGTATCCTGCGTGCCGCGACAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 90 bp AAGGTCTCGCTGTCGCGGCACGCAGGATACGTGGGCACCGTGCAGTaGCTCTGGTCCTCGTCACAGACCTTCATGTTGGTGCACGGATTC +
Preference number: 6 (lower is better)
Translates to: KVSLSRHAGYVGTVQ*LWSSSQTFMLVHGF
Trigger: GAATCCGTGCACCAACATGAAGGTCTGTGACGAGGACCAGAGCAACTGCACGGTGCCCACGTATCCTGCGTGCCGCGACAGCGAGACCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 72 bp TCTTGGGCCCAGGCACTACTGAGGACTCGTACAGGGTaGACTCCAACAGGTCAATGGGGTTGGGAACCCCCT +
Preference number: 6 (lower is better)
Translates to: SWAQALLRTRTG*TPTGQWGWEPP
Trigger: AGGGGGTTCCCAACCCCATTGACCTGTTGGAGTCCACCCTGTACGAGTCCTCAGTAGTGCCTGGGCCCAAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 72 bp CCAGCAGCTCCACGTAGTGCTTGCAGCGCCGTTCGATaGCAATGTGCAGGGATGTCTGGCCTCGGTAGTAGA +
Preference number: 6 (lower is better)
Translates to: PAAPRSACSAVR*QCAGMSGLGSR
Trigger: TCTACTACCGAGGCCAGACATCCCTGCACATTGCCATCGAACGGCGCTGCAAGCACTACGTGGAGCTGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112225.8
CDS CCA 72 bp TGTGGTCCGGTAAGGGTAGGGTGGCGTGCCCTCCAGTaGCTGATAGTAGGCGGTGAGGGTGAAGATGACCAT +
Preference number: 6 (lower is better)
Translates to: CGPVRVGWRALQ*LIVGGEGEDDH
Trigger: ATGGTCATCTTCACCCTCACCGCCTACTATCAGCCACTGGAGGGCACGCCACCCTACCCTTACCGGACCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 72 bp ACTTGGGAGCGTAGCCCTGCTGGTGGCCGTCACAGTTaGGGTTCCCTAGGTTATCCAGGGGTACCACCACTT +
Preference number: 6 (lower is better)
Translates to: TWERSPAGGRHS*GSLGYPGVPPL
Trigger: AAGTGGTGGTACCCCTGGATAACCTAGGGAACCCCAACTGTGACGGCCACCAGCAGGGCTACGCTCCCAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp GACTCGTACAGGGTGGACTCCAACAGGTCAATGGGGTaGGGAACCCCCTTGCGGAAAGCGCCCTGGAACTTC +
Preference number: 6 (lower is better)
Translates to: DSYRVDSNRSMG*GTPLRKAPWNF
Trigger: GAAGTTCCAGGGCGCTTTCCGCAAGGGGGTTCCCAACCCCATTGACCTGTTGGAGTCCACCCTGTACGAGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp TCCAGGGGTACCACCACTTCATCTGCGCTTGAGTTCTaGTTCAGCTCCACTACGCGGGGCACCACCGAGGAC +
Preference number: 6 (lower is better)
Translates to: SRGTTTSSALEF*FSSTTRGTTED
Trigger: GTCCTCGGTGGTGCCCCGCGTAGTGGAGCTGAACAAGAACTCAAGCGCAGATGAAGTGGTGGTACCCCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 90 bp TTCCCCGTGGACGGCTCCCGGAACTCCTCATCAGTCAGGCGCTTCTaGTGGGTCAACAAGAAGGAGAGCAGTCCATCTAGGTCCGCAGTG +
Preference number: 6 (lower is better)
Translates to: FPVDGSRNSSSVRRF*WVNKKESSPSRSAV
Trigger: CACTGCGGACCTAGATGGACTGCTCTCCTTCTTGTTGACCCACAAGAAGCGCCTGACTGATGAGGAGTTCCGGGAGCCGTCCACGGGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 90 bp TCGTACAGGGTGGACTCCAACAGGTCAATGGGGTTGGGAACCCCCTaGCGGAAAGCGCCCTGGAACTTCATACGCAGGTTTGGACGTCCA +
Preference number: 6 (lower is better)
Translates to: SYRVDSNRSMGLGTP*RKAPWNFIRRFGRP
Trigger: TGGACGTCCAAACCTGCGTATGAAGTTCCAGGGCGCTTTCCGCAAGGGGGTTCCCAACCCCATTGACCTGTTGGAGTCCACCCTGTACGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 90 bp ACTACTGAGGACTCGTACAGGGTGGACTCCAACAGGTCAATGGGGTaGGGAACCCCCTTGCGGAAAGCGCCCTGGAACTTCATACGCAGG +
Preference number: 6 (lower is better)
Translates to: TTEDSYRVDSNRSMG*GTPLRKAPWNFIRR
Trigger: CCTGCGTATGAAGTTCCAGGGCGCTTTCCGCAAGGGGGTTCCCAACCCCATTGACCTGTTGGAGTCCACCCTGTACGAGTCCTCAGTAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 90 bp CCTAGGTTATCCAGGGGTACCACCACTTCATCTGCGCTTGAGTTCTaGTTCAGCTCCACTACGCGGGGCACCACCGAGGACCAACGATCC +
Preference number: 6 (lower is better)
Translates to: PRLSRGTTTSSALEF*FSSTTRGTTEDQRS
Trigger: GGATCGTTGGTCCTCGGTGGTGCCCCGCGTAGTGGAGCTGAACAAGAACTCAAGCGCAGATGAAGTGGTGGTACCCCTGGATAACCTAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 72 bp TCAATGGGGTTGGGAACCCCCTTGCGGAAAGCGCCCTaGAACTTCATACGCAGGTTTGGACGTCCATCGCCA +
Preference number: 6 (lower is better)
Translates to: SMGLGTPLRKAP*NFIRRFGRPSP
Trigger: TGGCGATGGACGTCCAAACCTGCGTATGAAGTTCCAGGGCGCTTTCCGCAAGGGGGTTCCCAACCCCATTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 72 bp ACTCGTACAGGGTGGACTCCAACAGGTCAATGGGGTTaGGAACCCCCTTGCGGAAAGCGCCCTGGAACTTCA +
Preference number: 6 (lower is better)
Translates to: TRTGWTPTGQWG*EPPCGKRPGTS
Trigger: TGAAGTTCCAGGGCGCTTTCCGCAAGGGGGTTCCCAACCCCATTGACCTGTTGGAGTCCACCCTGTACGAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 72 bp TGCCGTAGTCGAACAAGGAATCCATGGGCGCTTTCTTaGGCCCAGGCACTACTGAGGACTCGTACAGGGTGG +
Preference number: 6 (lower is better)
Translates to: CRSRTRNPWALS*AQALLRTRTGW
Trigger: CCACCCTGTACGAGTCCTCAGTAGTGCCTGGGCCCAAGAAAGCGCCCATGGATTCCTTGTTCGACTACGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp TACATCTTGGTGACAAACTTGGTGTTCTCTCGGGTGTaGTCGGCGATGGCCACCAGCGCGTGCAGCACCGTG +
Preference number: 6 (lower is better)
Translates to: YILVTNLVFSRV*SAMATSACSTV
Trigger: CACGGTGCTGCACGCGCTGGTGGCCATCGCCGACAACACCCGAGAGAACACCAAGTTTGTCACCAAGATGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp GTGCAGTTGCTCTGGTCCTCGTCACAGACCTTCATGTaGGTGCACGGATTCAGGAGGGTGACCAGGGCTGAG +
Preference number: 6 (lower is better)
Translates to: VQLLWSSSQTFM*VHGFRRVTRAE
Trigger: CTCAGCCCTGGTCACCCTCCTGAATCCGTGCACCAACATGAAGGTCTGTGACGAGGACCAGAGCAACTGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 90 bp CGTGAACACTTGAGAAGCAGCAGGTCGTACATCTTGGTGACAAACTaGGTGTTCTCTCGGGTGTTGTCGGCGATGGCCACCAGCGCGTGC +
Preference number: 6 (lower is better)
Translates to: REHLRSSRSYILVTN*VFSRVLSAMATSAC
Trigger: GCACGCGCTGGTGGCCATCGCCGACAACACCCGAGAGAACACCAAGTTTGTCACCAAGATGTACGACCTGCTGCTTCTCAAGTGTTCACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS TCA 72 bp GGAATCCATGGGCGCTTTCTTGGGCCCAGGCACTACTaGGGACTCGTACAGGGTGGACTCCAACAGGTCAAT +
Preference number: 6 (lower is better)
Translates to: GIHGRFLGPRHY*GLVQGGLQQVN
Trigger: ATTGACCTGTTGGAGTCCACCCTGTACGAGTCCTCAGTAGTGCCTGGGCCCAAGAAAGCGCCCATGGATTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS TCA 72 bp GATGCCGGGTGTCCTCATCTGTCACCTCACGTCGGATaGTGTGCTGAAAGACCCCGATCTTGCCTGTCTTGG +
Preference number: 6 (lower is better)
Translates to: DAGCPHLSPHVG*CAERPRSCLSW
Trigger: CCAAGACAGGCAAGATCGGGGTCTTTCAGCACATCATCCGACGTGAGGTGACAGATGAGGACACCCGGCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071968.9
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 72 bp GGTGACGGTAAGTGCCGTAGTCGAACAAGGAATCCATaGGCGCTTTCTTGGGCCCAGGCACTACTGAGGACT +
Preference number: 6 (lower is better)
Translates to: GDGKCRSRTRNP*ALSWAQALLRT
Trigger: AGTCCTCAGTAGTGCCTGGGCCCAAGAAAGCGCCCATGGATTCCTTGTTCGACTACGGCACTTACCGTCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 72 bp GGCTCCCGGAACTCCTCATCAGTCAGGCGCTTCTTGTaGGTCAACAAGAAGGAGAGCAGTCCATCTAGGTCC +
Preference number: 6 (lower is better)
Translates to: GSRNSSSVRRFL*VNKKESSPSRS
Trigger: GGACCTAGATGGACTGCTCTCCTTCTTGTTGACCCACAAGAAGCGCCTGACTGATGAGGAGTTCCGGGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CCA 72 bp TCAGGAACACAGGGAAGGAACGCTCGATGTCCAGGATaGTGGTGGCCCACTGCAACTTCCAGATGTGCTTGC +
Preference number: 6 (lower is better)
Translates to: SGTQGRNARCPG*WWPTATSRCAC
Trigger: GCAAGCACATCTGGAAGTTGCAGTGGGCCACCACCATCCTGGACATCGAGCGTTCCTTCCCTGTGTTCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp GTGGACTCCAACAGGTCAATGGGGTTGGGAACCCCCTaGCGGAAAGCGCCCTGGAACTTCATACGCAGGTTT +
Preference number: 6 (lower is better)
Translates to: VDSNRSMGLGTP*RKAPWNFIRRF
Trigger: AAACCTGCGTATGAAGTTCCAGGGCGCTTTCCGCAAGGGGGTTCCCAACCCCATTGACCTGTTGGAGTCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp GACGGCTCCCGGAACTCCTCATCAGTCAGGCGCTTCTaGTGGGTCAACAAGAAGGAGAGCAGTCCATCTAGG +
Preference number: 6 (lower is better)
Translates to: DGSRNSSSVRRF*WVNKKESSPSR
Trigger: CCTAGATGGACTGCTCTCCTTCTTGTTGACCCACAAGAAGCGCCTGACTGATGAGGAGTTCCGGGAGCCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp ATGTCTCTGAAGGGCGAGTTGATGAATTCACGCATGTaGCCGGTGCGCTCCGCAATGTCCAGCAACACCGGG +
Preference number: 6 (lower is better)
Translates to: MSLKGELMNSRM*PVRSAMSSNTG
Trigger: CCCGGTGTTGCTGGACATTGCGGAGCGCACCGGCAACATGCGTGAATTCATCAACTCGCCCTTCAGAGACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp ACAGCCAGCATCTCATGGCGGTTCTCGATCTTGCTGTaGTACACCAGGATCTCCAGCACGGACACCTCCTCC +
Preference number: 6 (lower is better)
Translates to: TASISWRFSILL*YTRISSTDTSS
Trigger: GGAGGAGGTGTCCGTGCTGGAGATCCTGGTGTACAACAGCAAGATCGAGAACCGCCATGAGATGCTGGCTGT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071968.9
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 90 bp TCGGGGAAGAGGCGTGAACACTTGAGAAGCAGCAGGTCGTACATCTaGGTGACAAACTTGGTGTTCTCTCGGGTGTTGTCGGCGATGGCC +
Preference number: 6 (lower is better)
Translates to: SGKRREHLRSSRSYI*VTNLVFSRVLSAMA
Trigger: GGCCATCGCCGACAACACCCGAGAGAACACCAAGTTTGTCACCAAGATGTACGACCTGCTGCTTCTCAAGTGTTCACGCCTCTTCCCCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS TCA 72 bp CATGTTGGTGCACGGATTCAGGAGGGTGACCAGGGCTaGGGCATAGCCGATCATGAAGAGCAGGTACACAAG +
Preference number: 6 (lower is better)
Translates to: HVGARIQEGDQG*GIADHEEQVHK
Trigger: CTTGTGTACCTGCTCTTCATGATCGGCTATGCCTCAGCCCTGGTCACCCTCCTGAATCCGTGCACCAACATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 90 bp TTGCCTGTCTTGGCAGCCATCATGAGAGGCGAAAGGCCATCATTGTaGAGAACTGTCTCCAGGTTGCTGTCGGGGAAGAGGCGTGAACAC +
Preference number: 6 (lower is better)
Translates to: LPVLAAIMRGERPSL*RTVSRLLSGKRREH
Trigger: GTGTTCACGCCTCTTCCCCGACAGCAACCTGGAGACAGTTCTCAACAATGATGGCCTTTCGCCTCTCATGATGGCTGCCAAGACAGGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS TCA 72 bp GAGAACTGTCTCCAGGTTGCTGTCGGGGAAGAGGCGTaGACACTTGAGAAGCAGCAGGTCGTACATCTTGGT +
Preference number: 6 (lower is better)
Translates to: ENCLQVAVGEEA*TLEKQQVVHLG
Trigger: ACCAAGATGTACGACCTGCTGCTTCTCAAGTGTTCACGCCTCTTCCCCGACAGCAACCTGGAGACAGTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS TCA 72 bp AGAGAGAAGAATACACAGGCCCATAGGCCCAGTCCTTaGACTTGCGAGACAGATGCCGGGTGTCCTCATCTG +
Preference number: 6 (lower is better)
Translates to: REKNTQAHRPSP*TCETDAGCPHL
Trigger: CAGATGAGGACACCCGGCATCTGTCTCGCAAGTTCAAGGACTGGGCCTATGGGCCTGTGTATTCTTCTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071968.9
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp TTGAGAAGCAGCAGGTCGTACATCTTGGTGACAAACTaGGTGTTCTCTCGGGTGTTGTCGGCGATGGCCACC +
Preference number: 6 (lower is better)
Translates to: LRSSRSYILVTN*VFSRVLSAMAT
Trigger: GGTGGCCATCGCCGACAACACCCGAGAGAACACCAAGTTTGTCACCAAGATGTACGACCTGCTGCTTCTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp GTCTCCAGGTTGCTGTCGGGGAAGAGGCGTGAACACTaGAGAAGCAGCAGGTCGTACATCTTGGTGACAAAC +
Preference number: 6 (lower is better)
Translates to: VSRLLSGKRREH*RSSRSYILVTN
Trigger: GTTTGTCACCAAGATGTACGACCTGCTGCTTCTCAAGTGTTCACGCCTCTTCCCCGACAGCAACCTGGAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp GGCGAAAGGCCATCATTGTTGAGAACTGTCTCCAGGTaGCTGTCGGGGAAGAGGCGTGAACACTTGAGAAGC +
Preference number: 6 (lower is better)
Translates to: GERPSLLRTVSR*LSGKRREHLRS
Trigger: GCTTCTCAAGTGTTCACGCCTCTTCCCCGACAGCAACCTGGAGACAGTTCTCAACAATGATGGCCTTTCGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp TTGGCAGCCATCATGAGAGGCGAAAGGCCATCATTGTaGAGAACTGTCTCCAGGTTGCTGTCGGGGAAGAGG +
Preference number: 6 (lower is better)
Translates to: LAAIMRGERPSL*RTVSRLLSGKR
Trigger: CCTCTTCCCCGACAGCAACCTGGAGACAGTTCTCAACAATGATGGCCTTTCGCCTCTCATGATGGCTGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 90 bp ATCATGAGAGGCGAAAGGCCATCATTGTTGAGAACTGTCTCCAGGTaGCTGTCGGGGAAGAGGCGTGAACACTTGAGAAGCAGCAGGTCG +
Preference number: 6 (lower is better)
Translates to: IMRGERPSLLRTVSR*LSGKRREHLRSSRS
Trigger: CGACCTGCTGCTTCTCAAGTGTTCACGCCTCTTCCCCGACAGCAACCTGGAGACAGTTCTCAACAATGATGGCCTTTCGCCTCTCATGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS GCA 72 bp TCCATCTCTTGTTGTCACTGGGGTGGTGACGGTAAGTaGCGTAGTCGAACAAGGAATCCATGGGCGCTTTCT +
Preference number: 6 (lower is better)
Translates to: SISCCHWGGDGK*RSRTRNPWALS
Trigger: AGAAAGCGCCCATGGATTCCTTGTTCGACTACGGCACTTACCGTCACCACCCCAGTGACAACAAGAGATGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 90 bp TTGAGAACTGTCTCCAGGTTGCTGTCGGGGAAGAGGCGTGAACACTaGAGAAGCAGCAGGTCGTACATCTTGGTGACAAACTTGGTGTTC +
Preference number: 6 (lower is better)
Translates to: LRTVSRLLSGKRREH*RSSRSYILVTNLVF
Trigger: GAACACCAAGTTTGTCACCAAGATGTACGACCTGCTGCTTCTCAAGTGTTCACGCCTCTTCCCCGACAGCAACCTGGAGACAGTTCTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8
CDS CAA 72 bp AGGCGTGAACACTTGAGAAGCAGCAGGTCGTACATCTaGGTGACAAACTTGGTGTTCTCTCGGGTGTTGTCG +
Preference number: 6 (lower is better)
Translates to: RREHLRSSRSYI*VTNLVFSRVLS
Trigger: CGACAACACCCGAGAGAACACCAAGTTTGTCACCAAGATGTACGACCTGCTGCTTCTCAAGTGTTCACGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071968.9
ENSMUST00000112217.2
ENSMUST00000112219.8
ENSMUST00000112222.8
ENSMUST00000112225.8