RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRPT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047656

Ensembl transcript IDs: ENSMUST00000088223.7

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GTGGCCCTGATTGGCCCTGATGAGGAGCCCAGTGCTCGGCTCGCCTaGCTGCAGGGTAAACCGCTGCTTTTCGTTGGTATTGACCACGAG +
Preference number: 5 (lower is better)
Translates to: VALIGPDEEPSARLA*LQGKPLLFVGIDHE
Trigger: CTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS GCA 90 bp ATGAGGAGCCCAGTGCTCGGCTCGCCTGGCTGCAGGGTAAACCGCTaGTTTTCGTTGGTATTGACCACGAGCTGCACATCTTCAATGGAA +
Preference number: 5 (lower is better)
Translates to: MRSPVLGSPGCRVNR*FSLVLTTSCTSSME
Trigger: TTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CCA 90 bp GGGTCCCCAGGCAATCCTGAGGCCAAGTGGATGTGTGTCCTTCCTTaGCGTGACAAGCCCTTTAGTAGAATAGATGGCCAGTGCTTCCAG +
Preference number: 5 (lower is better)
Translates to: GSPGNPEAKWMCVLP*RDKPFSRIDGQCFQ
Trigger: CTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CCA 90 bp AAGCCCTTTAGTAGAATAGATGGCCAGTGCTTCCAGAATGTACCATaGACTAGTGTCAAGGGCAGGGCTTGTGGTGTCTCCAGGGGCGTC +
Preference number: 5 (lower is better)
Translates to: KPFSRIDGQCFQNVP*TSVKGRACGVSRGV
Trigger: GACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CCA 90 bp GGCCTCCTTGAAGTACTTGGGAAGCAGGAAGCCTTCAGCATTCCCTaGAGTCAGAATCACACCATTGGCGGAGCAGAAGAAAGGGATTCC +
Preference number: 5 (lower is better)
Translates to: GLLEVLGKQEAFSIP*SQNHTIGGAEERDS
Trigger: GGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS TCA 90 bp TGGATCTTTCTTCTTCCTCCTCTGGAACTGAGCTTGGGGCCACTCTaGGTCTCTGTCTCTTTATCACCAGCCAAGGAGAGAGGCTTTCGT +
Preference number: 5 (lower is better)
Translates to: WIFLLPPLELSLGPL*VSVSLSPAKERGFR
Trigger: ACGAAAGCCTCTCTCCTTGGCTGGTGATAAAGAGACAGAGACTCAGAGTGGCCCCAAGCTCAGTTCCAGAGGAGGAAGAAGAAAGATCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS GCA 90 bp GTCCTTCCTTGGCGTGACAAGCCCTTTAGTAGAATAGATGGCCAGTaGTTCCAGAATGTACCATGGACTAGTGTCAAGGGCAGGGCTTGT +
Preference number: 5 (lower is better)
Translates to: VLPWRDKPFSRIDGQ*FQNVPWTSVKGRAC
Trigger: ACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CCA 72 bp GGAGGGCTTGCAGGGGCACAAAGCCATCAGCTCGCATaGGAAGTCCCAGCTTCAAGGCCCCGTGGCGAAGGG +
Preference number: 6 (lower is better)
Translates to: GGLAGAQSHQLA*EVPASRPRGEG
Trigger: CCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTGATGGCTTTGTGCCCCTGCAAGCCCTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS TCA 72 bp GTCAGTTCCAACTCAGGGACTTGTAGGGAGTGGCCCTaGTTGGCCCTGATGAGGAGCCCAGTGCTCGGCTCG +
Preference number: 6 (lower is better)
Translates to: VSSNSGTCREWP*LALMRSPVLGS
Trigger: CGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAAGTCCCTGAGTTGGAACTGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS GCA 72 bp GCCCTGATGAGGAGCCCAGTGCTCGGCTCGCCTGGCTaGAGGGTAAACCGCTGCTTTTCGTTGGTATTGACC +
Preference number: 6 (lower is better)
Translates to: ALMRSPVLGSPG*RVNRCFSLVLT
Trigger: GGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS GCA 72 bp CCAGTGCTCGGCTCGCCTGGCTGCAGGGTAAACCGCTaGTTTTCGTTGGTATTGACCACGAGCTGCACATCT +
Preference number: 6 (lower is better)
Translates to: PVLGSPGCRVNR*FSLVLTTSCTS
Trigger: AGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CAA 90 bp GCCAAGGAGAGAGGCTTTCGTGTAGGTCGAAGCTGCAGGGCCTCCTaGAAGTACTTGGGAAGCAGGAAGCCTTCAGCATTCCCTGGAGTC +
Preference number: 6 (lower is better)
Translates to: AKERGFRVGRSCRAS*KYLGSRKPSAFPGV
Trigger: GACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACACGAAAGCCTCTCTCCTTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS GCA 72 bp CCAGCCAAGGAGAGAGGCTTTCGTGTAGGTCGAAGCTaGAGGGCCTCCTTGAAGTACTTGGGAAGCAGGAAG +
Preference number: 6 (lower is better)
Translates to: PAKERGFRVGRS*RASLKYLGSRK
Trigger: CTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACACGAAAGCCTCTCTCCTTGGCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CAA 72 bp CGTGTAGGTCGAAGCTGCAGGGCCTCCTTGAAGTACTaGGGAAGCAGGAAGCCTTCAGCATTCCCTGGAGTC +
Preference number: 6 (lower is better)
Translates to: RVGRSCRASLKY*GSRKPSAFPGV
Trigger: GACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CAA 90 bp CCAGTGCTCGGCTCGCCTGGCTGCAGGGTAAACCGCTGCTTTTCGTaGGTATTGACCACGAGCTGCACATCTTCAATGGAAAAGCTGTGG +
Preference number: 6 (lower is better)
Translates to: PVLGSPGCRVNRCFS*VLTTSCTSSMEKLW
Trigger: CCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CAA 90 bp CTCGGCTCGCCTGGCTGCAGGGTAAACCGCTGCTTTTCGTTGGTATaGACCACGAGCTGCACATCTTCAATGGAAAAGCTGTGGAACTGG +
Preference number: 6 (lower is better)
Translates to: LGSPGCRVNRCFSLV*TTSCTSSMEKLWNW
Trigger: CCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CAA 90 bp GGAAGCAGGAAGCCTTCAGCATTCCCTGGAGTCAGAATCACACCATaGGCGGAGCAGAAGAAAGGGATTCCATCTGTGAGGGCTAGGGGT +
Preference number: 6 (lower is better)
Translates to: GSRKPSAFPGVRITP*AEQKKGIPSVRARG
Trigger: ACCCCTAGCCCTCACAGATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CAA 72 bp GGCTCGCCTGGCTGCAGGGTAAACCGCTGCTTTTCGTaGGTATTGACCACGAGCTGCACATCTTCAATGGAA +
Preference number: 6 (lower is better)
Translates to: GSPGCRVNRCFS*VLTTSCTSSME
Trigger: TTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CAA 72 bp AGAGGCTTTCGTGTAGGTCGAAGCTGCAGGGCCTCCTaGAAGTACTTGGGAAGCAGGAAGCCTTCAGCATTC +
Preference number: 6 (lower is better)
Translates to: RGFRVGRSCRAS*KYLGSRKPSAF
Trigger: GAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACACGAAAGCCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CAA 90 bp AGAGGCTTTCGTGTAGGTCGAAGCTGCAGGGCCTCCTTGAAGTACTaGGGAAGCAGGAAGCCTTCAGCATTCCCTGGAGTCAGAATCACA +
Preference number: 6 (lower is better)
Translates to: RGFRVGRSCRASLKY*GSRKPSAFPGVRIT
Trigger: TGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACACGAAAGCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS TCA 72 bp CTTCTTCCTCCTCTGGAACTGAGCTTGGGGCCACTCTaGGTCTCTGTCTCTTTATCACCAGCCAAGGAGAGA +
Preference number: 6 (lower is better)
Translates to: LLPPLELSLGPL*VSVSLSPAKER
Trigger: TCTCTCCTTGGCTGGTGATAAAGAGACAGAGACTCAGAGTGGCCCCAAGCTCAGTTCCAGAGGAGGAAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CCA 72 bp GGCAATCCTGAGGCCAAGTGGATGTGTGTCCTTCCTTaGCGTGACAAGCCCTTTAGTAGAATAGATGGCCAG +
Preference number: 6 (lower is better)
Translates to: GNPEAKWMCVLP*RDKPFSRIDGQ
Trigger: CTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CCA 72 bp GAAGTACTTGGGAAGCAGGAAGCCTTCAGCATTCCCTaGAGTCAGAATCACACCATTGGCGGAGCAGAAGAA +
Preference number: 6 (lower is better)
Translates to: EVLGKQEAFSIP*SQNHTIGGAEE
Trigger: TTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CAA 72 bp CCTGGCTGCAGGGTAAACCGCTGCTTTTCGTTGGTATaGACCACGAGCTGCACATCTTCAATGGAAAAGCTG +
Preference number: 6 (lower is better)
Translates to: PGCRVNRCFSLV*TTSCTSSMEKL
Trigger: CAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7
CDS CAA 72 bp AAGCCTTCAGCATTCCCTGGAGTCAGAATCACACCATaGGCGGAGCAGAAGAAAGGGATTCCATCTGTGAGG +
Preference number: 6 (lower is better)
Translates to: KPSAFPGVRITP*AEQKKGIPSVR
Trigger: CCTCACAGATGGAATCCCTTTCTTCTGCTCCGCCAATGGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088223.7