Pregenerated sensors for TRPD52L3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024815Ensembl transcript IDs: ENSMUST00000025727.6
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCTGCGATGACTGGGATGAAGCTCAGGGGACTTTACAGAATATGTaGGTCACTGGGTTGCATCGCCAACACTGCAATAAAGTACAGGTT | + |
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Preference number: 1 (lower is better) Translates to: SCDDWDEAQGTLQNM*VTGLHRQHCNKVQV Trigger: AACCTGTACTTTATTGCAGTGTTGGCGATGCAACCCAGTGACTCACATATTCTGTAAAGTCCCCTGAGCTTCATCCCAGTCATCGCAGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR CCA 90 bp | ATACATTCTTTTAATCCAAGCAAAAACGTGGCCTTTGGGACTCAGTaGAGGGCTGGGATTTATCAATGGCTTCACAGCTTATCAAGAGCT | + |
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Preference number: 1 (lower is better) Translates to: IHSFNPSKNVAFGTQ*RAGIYQWLHSLSRA Trigger: AGCTCTTGATAAGCTGTGAAGCCATTGATAAATCCCAGCCCTCCACTGAGTCCCAAAGGCCACGTTTTTGCTTGGATTAAAAGAATGTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR-3UTR TCA 90 bp | TGGACTGCTGGGCTTCAAGGTTACAGCAGCTCCTACTCCAGACAGTGTGGGAGAAGTCAACCAGAAGAGTaGTGTATATTTAGTAAGGCC | + |
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Preference number: 2 (lower is better) Translates to: WTAGLQGYSSSYSRQCGRSQPEE*CIFSKA Trigger: GGCCTTACTAAATATACATCACTCTTCTGGTTGACT...TCTCCCACACTGTCTGGAGTAGGAGCTGCTGTAACCTTGAAGCCCAGCAGTCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR CAA 90 bp | TCCTACAGGTCCCTATTGATCTTGGGAGTCCTTCTTCCTTCCGGGTaGAAGTTAAAAACGGGCAGGTTTAGAGTCAACCAGAAGAGTGAT | + |
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Preference number: 2 (lower is better) Translates to: SYRSLLILGVLLPSG*KLKTGRFRVNQKSD Trigger: ATCACTCTTCTGGTTGACTCTAAACCTGCCCGTTTTTAACTTCAACCCGGAAGGAAGAAGGACTCCCAAGATCAATAGGGACCTGTAGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR CAA 90 bp | AGCTTGAACAAACTCAAACCAAGTTCCTACAGGTCCCTATTGATCTaGGGAGTCCTTCTTCCTTCCGGGTTGAAGTTAAAAACGGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: SLNKLKPSSYRSLLI*GVLLPSGLKLKTGR Trigger: CCTGCCCGTTTTTAACTTCAACCCGGAAGGAAGAAGGACTCCCAAGATCAATAGGGACCTGTAGGAACTTGGTTTGAGTTTGTTCAAGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR-3UTR CCA 90 bp | TTTAATCCAAGCAAAAACGTGGCCTTTGGGACTCAGTGGAGGGCTGGGATTTATCCTCGTTATCACAACTaGTCCATATCTATGTTCAGA | + |
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Preference number: 2 (lower is better) Translates to: FNPSKNVAFGTQWRAGIYPRYHN*SISMFR Trigger: TCTGAACATAGATATGGACCAGTTGTGATAACGAGG...ATAAATCCCAGCCCTCCACTGAGTCCCAAAGGCCACGTTTTTGCTTGGATTAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR-3UTR CCA 90 bp | CAAACTCAAACCAAGTTCCTACAGGTCCCTATTGATCTTGGGAGTCCTTCTTCCTGTTTAAGATGGAGGTaGGAGGAGGCTTATATTTCT | + |
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Preference number: 2 (lower is better) Translates to: QTQTKFLQVPIDLGSPSSCLRWR*EEAYIS Trigger: AGAAATATAAGCCTCCTCCCACCTCCATCTTAAACA...GGAAGAAGGACTCCCAAGATCAATAGGGACCTGTAGGAACTTGGTTTGAGTTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR CAA 90 bp | TTAGAAAGCTTGAACAAACTCAAACCAAGTTCCTACAGGTCCCTATaGATCTTGGGAGTCCTTCTTCCTTCCGGGTTGAAGTTAAAAACG | + |
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Preference number: 2 (lower is better) Translates to: LESLNKLKPSSYRSL*ILGVLLPSGLKLKT Trigger: CGTTTTTAACTTCAACCCGGAAGGAAGAAGGACTCCCAAGATCAATAGGGACCTGTAGGAACTTGGTTTGAGTTTGTTCAAGCTTTCTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR-3UTR GCA 90 bp | TTAAAGACTTTAGGATCTGGTCTAAGACCCCTTGGAGCCATTACTGAGTCCATTAACAGCAAATATCTATaGAGAAATGGGTGTCCTCGT | + |
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Preference number: 2 (lower is better) Translates to: LKTLGSGLRPLGAITESINSKYL*RNGCPR Trigger: ACGAGGACACCCATTTCTGCATAGATATTTGCTGTT...AATGGACTCAGTAATGGCTCCAAGGGGTCTTAGACCAGATCCTAAAGTCTTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR-3UTR GCA 90 bp | CATTACAGGGGACTAAAATGTTTAAGATGGAGGTGGGAGGAGGCTTATATTTCTCTAATTGACAACTGCTaGAGAATAAGATGCAACCGG | + |
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Preference number: 2 (lower is better) Translates to: HYRGLKCLRWRWEEAYISLIDNC*RIRCNR Trigger: CCGGTTGCATCTTATTCTGCAGCAGTTGTCAATTAG...AGAAATATAAGCCTCCTCCCACCTCCATCTTAAACATTTTAGTCCCCTGTAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR CAA 90 bp | AACTGGTCCATATCTATGTTCAGAATTAGAGTGGTTTTACCATTGTaGGTTGGTTGCTTGTTTTTGTTTGACAACTGCGATGACGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: NWSISMFRIRVVLPL*VGCLFLFDNCDDGR Trigger: TCTTCCGTCATCGCAGTTGTCAAACAAAAACAAGCAACCAACCAACAATGGTAAAACCACTCTAATTCTGAACATAGATATGGACCAGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR CAA 90 bp | CATAACACAAACCACAGTGCCTGTGAAAATGAGATATTAGAAAGCTaGAACAAACTCAAACCAAGTTCCTACAGGTCCCTATTGATCTTG | + |
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Preference number: 2 (lower is better) Translates to: HNTNHSACENEILES*NKLKPSSYRSLLIL Trigger: CAAGATCAATAGGGACCTGTAGGAACTTGGTTTGAGTTTGTTCAAGCTTTCTAATATCTCATTTTCACAGGCACTGTGGTTTGTGTTATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR-3UTR CCA 90 bp | AAGAACAGCAAATATCTATGCAGAAATGGGTGTCCTCGTTATCACAACTGGTCCTGTTCAGAATTAGAGTaGTTTTACCATTGTTGGTTG | + |
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Preference number: 2 (lower is better) Translates to: KNSKYLCRNGCPRYHNWSCSELE*FYHCWL Trigger: CAACCAACAATGGTAAAACCACTCTAATTCTGAACA...GGACCAGTTGTGATAACGAGGACACCCATTTCTGCATAGATATTTGCTGTTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR-3UTR CCA 90 bp | TCTACACTGACAGCAGTATTTAGTTTCACTGTAGAGAACAAAAGGGGGTGTAAGTGGTTTTACCATTGTTaGTTGGTTGCTTGTTTTTGT | + |
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Preference number: 2 (lower is better) Translates to: STLTAVFSFTVENKRGCKWFYHC*LVACFC Trigger: ACAAAAACAAGCAACCAACCAACAATGGTAAAACCA...CTTACACCCCCTTTTGTTCTCTACAGTGAAACTAAATACTGCTGTCAGTGTAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR-3UTR CAA 90 bp | ACAGTGGACTGCTGGGCTTCAAGGTTACAGCAGCTCCTACTCCAGACAGTGTGGGTTGCTTGTTTTTGTTaGACAACTGCGATGACGGAA | + |
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Preference number: 3 (lower is better) Translates to: TVDCWASRLQQLLLQTVWVACFC*TTAMTE Trigger: TTCCGTCATCGCAGTTGTCAAACAAAAACAAGCAAC...CCACACTGTCTGGAGTAGGAGCTGCTGTAACCTTGAAGCCCAGCAGTCCACTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR CCA 72 bp | GCCTTTGGGACTCAGTGGAGGGCTGGGATTTATCAATaGCTTCACAGCTTATCAAGAGCTTCTACACTGACA | + |
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Preference number: 3 (lower is better) Translates to: AFGTQWRAGIYQ*LHSLSRASTLT Trigger: TGTCAGTGTAGAAGCTCTTGATAAGCTGTGAAGCCATTGATAAATCCCAGCCCTCCACTGAGTCCCAAAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR CCA 72 bp | AAGCAAAAACGTGGCCTTTGGGACTCAGTGGAGGGCTaGGATTTATCAATGGCTTCACAGCTTATCAAGAGC | + |
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Preference number: 3 (lower is better) Translates to: KQKRGLWDSVEG*DLSMASQLIKS Trigger: GCTCTTGATAAGCTGTGAAGCCATTGATAAATCCCAGCCCTCCACTGAGTCCCAAAGGCCACGTTTTTGCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR-3UTR CAA 90 bp | AACGACAGGTTATTGAAATATACTCCAGCAGACAGTGGACTGCTGGGCTTCAAGGAATATCTAGCCAGGTaGCTTCATCCCCTTTCCCAA | + |
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Preference number: 3 (lower is better) Translates to: NDRLLKYTPADSGLLGFKEYLAR*LHPLSQ Trigger: TTGGGAAAGGGGATGAAGCAACCTGGCTAGATATTC...CTTGAAGCCCAGCAGTCCACTGTCTGCTGGAGTATATTTCAATAACCTGTCGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR TCA 72 bp | GACTGGGATGAAGCTCAGGGGACTTTACAGAATATGTaGGTCACTGGGTTGCATCGCCAACACTGCAATAAA | + |
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Preference number: 3 (lower is better) Translates to: DWDEAQGTLQNM*VTGLHRQHCNK Trigger: TTTATTGCAGTGTTGGCGATGCAACCCAGTGACTCACATATTCTGTAAAGTCCCCTGAGCTTCATCCCAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR CCA 72 bp | TTTAATCCAAGCAAAAACGTGGCCTTTGGGACTCAGTaGAGGGCTGGGATTTATCAATGGCTTCACAGCTTA | + |
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Preference number: 3 (lower is better) Translates to: FNPSKNVAFGTQ*RAGIYQWLHSL Trigger: TAAGCTGTGAAGCCATTGATAAATCCCAGCCCTCCACTGAGTCCCAAAGGCCACGTTTTTGCTTGGATTAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR-3UTR CAA 90 bp | GGTGGGAGGAGGCTTATATTTCTTAATCTGGATACACTGTGCCCCTTAGCTGAAGTTGGTTGCTTGTTTTaGTTTGACAACTGCGATGAC | + |
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Preference number: 3 (lower is better) Translates to: GGRRLIFLNLDTLCPLAEVGCLF*FDNCDD Trigger: GTCATCGCAGTTGTCAAACAAAAACAAGCAACCAAC...TTCAGCTAAGGGGCACAGTGTATCCAGATTAAGAAATATAAGCCTCCTCCCACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR-3UTR CAA 90 bp | TCTACACTGACAGCAGTATTTAGTTTCACTGTAGAGAACAAAAGGGGGTGTAAGCTTCTTCCTTCCGGGTaGAAGTTAAAAACGGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: STLTAVFSFTVENKRGCKLLPSG*KLKTGR Trigger: CCTGCCCGTTTTTAACTTCAACCCGGAAGGAAGAAG...CTTACACCCCCTTTTGTTCTCTACAGTGAAACTAAATACTGCTGTCAGTGTAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR-3UTR CAA 90 bp | CAGGTCCCTATTGATCTTGGGAGTCCTTCTTCCTTCCGGGTTGAAGTTAAAAACTTGTTGGTTGGTTGCTaGTTTTTGTTTGACAACTGC | + |
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Preference number: 3 (lower is better) Translates to: QVPIDLGSPSSFRVEVKNLLVGC*FLFDNC Trigger: GCAGTTGTCAAACAAAAACAAGCAACCAACCAACAA...GTTTTTAACTTCAACCCGGAAGGAAGAAGGACTCCCAAGATCAATAGGGACCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR-3UTR CAA 90 bp | TGGGATTTATCAATGGCTTCACAGCTTATCAAGAGCTTCTACACTGACAGCAGTAGAGTGGTTTTACCATaGTTGGTTGGTTGCTTGTTT | + |
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Preference number: 3 (lower is better) Translates to: WDLSMASQLIKSFYTDSSRVVLP*LVGCLF Trigger: AAACAAGCAACCAACCAACAATGGTAAAACCACTCT...ACTGCTGTCAGTGTAGAAGCTCTTGATAAGCTGTGAAGCCATTGATAAATCCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR CCA 72 bp | TATCTATGCAGAAATGGGTGTCCTCGTTATCACAACTaGTCCATATCTATGTTCAGAATTAGAGTGGTTTTA | + |
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Preference number: 3 (lower is better) Translates to: YLCRNGCPRYHN*SISMFRIRVVL Trigger: TAAAACCACTCTAATTCTGAACATAGATATGGACCAGTTGTGATAACGAGGACACCCATTTCTGCATAGATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR TCA 90 bp | ACAGTGGACTGCTGGGCTTCAAGGTTACAGCAGCTCCTACTCCAGACAGTGTGGCGAGGCCAGGGCAGTTaGCGTCTTCTGCTTCATGTA | + |
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Preference number: 4 (lower is better) Translates to: TVDCWASRLQQLLLQTVWRGQGS*RLLLHV Trigger: TACATGAAGCAGAAGACGTCAACTGCCCTGGCCTCG...CCACACTGTCTGGAGTAGGAGCTGCTGTAACCTTGAAGCCCAGCAGTCCACTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR CCA 90 bp | TGCAGAATAAGATGCAACCGGTGGCGGAGACATGCTGCCTCAAGGGTTAAACTTCAAGCTTCCTGCAGATaGCAGAACCCACCGAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: CRIRCNRWRRHAASRVKLQASCR*QNPPRP Trigger: TGGCCTCGGTGGGTTCTGCCATCTGCAGGAAGCTTG...AAGTTTAACCCTTGAGGCAGCATGTCTCCGCCACCGGTTGCATCTTATTCTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR CCA 90 bp | TGGACTGCTGGGCTTCAAGGTTACAGCAGCTCCTACTCCAGACAGTGTGGGAGAACGGAGTCCAATCCTTaGTTTGAGGAGAAACAGTTG | + |
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Preference number: 4 (lower is better) Translates to: WTAGLQGYSSSYSRQCGRTESNP*FEEKQL Trigger: CAACTGTTTCTCCTCAAACCAAGGATTGGACTCCGT...TCTCCCACACTGTCTGGAGTAGGAGCTGCTGTAACCTTGAAGCCCAGCAGTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR CCA 90 bp | CTTTGGGACTCAGTGGAGGGCTGGGATTTATCAATGGCTTCACAGCTTATCAAGGGCGGGATTCATTTGTaGACGCAGAGGTCTCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: LWDSVEGWDLSMASQLIKGGIHL*TQRSLS Trigger: TGACAGAGACCTCTGCGTCCACAAATGAATCCCGCC...CTTGATAAGCTGTGAAGCCATTGATAAATCCCAGCCCTCCACTGAGTCCCAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR TCA 90 bp | CAGGTCCCTATTGATCTTGGGAGTCCTTCTTCCTTCCGGGTTGAAGTTAAAAACAGCCTAACTTCCTCTTaGGTTCGCCACACCGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: QVPIDLGSPSSFRVEVKNSLTSS*VRHTAS Trigger: AGAAGCGGTGTGGCGAACTCAAGAGGAAGTTAGGCT...GTTTTTAACTTCAACCCGGAAGGAAGAAGGACTCCCAAGATCAATAGGGACCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR GCA 90 bp | TGTTTGACAACTGCGATGACGGAAGAAGGAATACATAGATACAGGTTTGGCAGCCACTGCCGAGCTCTCTaGCACCTGCAACTCTTGACT | + |
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Preference number: 4 (lower is better) Translates to: CLTTAMTEEGIHRYRFGSHCRAL*HLQLLT Trigger: AGTCAAGAGTTGCAGGTGGCAGAGAGCTCGGCAGTG...GCTGCCAAACCTGTATCTATGTATTCCTTCTTCCGTCATCGCAGTTGTCAAACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR CAA 72 bp | GAACTCAAGGGCCAAATTGTAGGCAACGACAGGTTATaGAAATATACTCCAGCAGACAGTGGACTGCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: ELKGQIVGNDRL*KYTPADSGLLG Trigger: GCCCAGCAGTCCACTGTCTGCTGGAGTATATTTCAATAACCTGTCGTTGCCTACAATTTGGCCCTTGAGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR GCA 90 bp | AAGAACAGCAAATATCTATGCAGAAATGGGTGTCCTCGTTATCACAACTGGTCCCATCTCCAAGCTTCCTaGAGATGGCAGAACCCACCG | + |
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Preference number: 4 (lower is better) Translates to: KNSKYLCRNGCPRYHNWSHLQAS*RWQNPP Trigger: CGGTGGGTTCTGCCATCTGCAGGAAGCTTGGAGATG...GGACCAGTTGTGATAACGAGGACACCCATTTCTGCATAGATATTTGCTGTTCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR TCA 90 bp | TGGGATTTATCAATGGCTTCACAGCTTATCAAGAGCTTCTACACTGACAGCAGTCTGCAACTCTTGACTTaGCTGTTCCCACCAGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: WDLSMASQLIKSFYTDSSLQLLT*LFPPAL Trigger: AAGGGCTGGTGGGAACAGTCAAGTCAAGAGTTGCAG...ACTGCTGTCAGTGTAGAAGCTCTTGATAAGCTGTGAAGCCATTGATAAATCCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR CAA 72 bp | GTAGGTCAAGTGGTGCTAGTAGAATATCTAGCCAGGTaGCTTCATCCCCTTTCCCAATCCCAGACAGAAATC | + |
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Preference number: 4 (lower is better) Translates to: VGQVVLVEYLAR*LHPLSQSQTEI Trigger: GATTTCTGTCTGGGATTGGGAAAGGGGATGAAGCAACCTGGCTAGATATTCTACTAGCACCACTTGACCTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR CAA 72 bp | TCCCTATTGATCTTGGGAGTCCTTCTTCCTTCCGGGTaGAAGTTAAAAACGGGCAGGTTTAGAGTCAACCAG | + |
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Preference number: 4 (lower is better) Translates to: SLLILGVLLPSG*KLKTGRFRVNQ Trigger: CTGGTTGACTCTAAACCTGCCCGTTTTTAACTTCAACCCGGAAGGAAGAAGGACTCCCAAGATCAATAGGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR TCA 90 bp | AAGAACAGCAAATATCTATGCAGAAATGGGTGTCCTCGTTATCACAACTGGTCCATCATGCCAGCTCTTTaGCAGATTCTGCCTCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: KNSKYLCRNGCPRYHNWSIMPAL*QILPQS Trigger: GGACTGAGGCAGAATCTGTCAAAGAGCTGGCATGAT...GGACCAGTTGTGATAACGAGGACACCCATTTCTGCATAGATATTTGCTGTTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR CAA 72 bp | TTGAACAAACTCAAACCAAGTTCCTACAGGTCCCTATaGATCTTGGGAGTCCTTCTTCCTTCCGGGTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: LNKLKPSSYRSL*ILGVLLPSGLK Trigger: CTTCAACCCGGAAGGAAGAAGGACTCCCAAGATCAATAGGGACCTGTAGGAACTTGGTTTGAGTTTGTTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR TCA 90 bp | AAATATCTATGCAGAAATGGGTGTCCTCGTTATCACAACTGGTCCATATCTATGGTCCAATCCTTGGTTTaGGGAGAAACAGTTGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: KYLCRNGCPRYHNWSISMVQSLV*GETVGA Trigger: AGCCCCAACTGTTTCTCCTCAAACCAAGGATTGGAC...CATAGATATGGACCAGTTGTGATAACGAGGACACCCATTTCTGCATAGATATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR CCA 90 bp | TGGGATTTATCAATGGCTTCACAGCTTATCAAGAGCTTCTACACTGACAGCAGTCTCTGTCATGGCATCTaGAACAGACAAGGAAAGATC | + |
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Preference number: 4 (lower is better) Translates to: WDLSMASQLIKSFYTDSSLCHGI*NRQGKI Trigger: GATCTTTCCTTGTCTGTTCCAGATGCCATGACAGAG...ACTGCTGTCAGTGTAGAAGCTCTTGATAAGCTGTGAAGCCATTGATAAATCCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR CCA 90 bp | AAATATCTATGCAGAAATGGGTGTCCTCGTTATCACAACTGGTCCATATCTATGGCTTCATGTAGGTGTTaGAGGCCTGAACATCATGCC | + |
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Preference number: 4 (lower is better) Translates to: KYLCRNGCPRYHNWSISMASCRC*RPEHHA Trigger: GGCATGATGTTCAGGCCTCCAACACCTACATGAAGC...CATAGATATGGACCAGTTGTGATAACGAGGACACCCATTTCTGCATAGATATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| 3UTR CAA 72 bp | AAACTCAAACCAAGTTCCTACAGGTCCCTATTGATCTaGGGAGTCCTTCTTCCTTCCGGGTTGAAGTTAAAA | + |
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Preference number: 4 (lower is better) Translates to: KLKPSSYRSLLI*GVLLPSGLKLK Trigger: TTTTAACTTCAACCCGGAAGGAAGAAGGACTCCCAAGATCAATAGGGACCTGTAGGAACTTGGTTTGAGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS GCA 90 bp | CTGCAACAGTTTCATATCCACTCCCCAGAGCCGAGTGTGGATCACTaGCACTCACTGGTGAAGGGAGAAGGCCACTGCCGAGCTCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: LQQFHIHSPEPSVDH*HSLVKGEGHCRALC Trigger: GCAGAGAGCTCGGCAGTGGCCTTCTCCCTTCACCAGTGAGTGGCAGTGATCCACACTCGGCTCTGGGGAGTGGATATGAAACTGTTGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS TCA 90 bp | GATTCTGCCTCAGTCCCACCAAGGGCACGCAGCCTAACTTCCTCTTaGGTTCGCCACACCGCTTCTCTTTGGCTGCAAGCAGGTCACGTA | + |
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Preference number: 5 (lower is better) Translates to: DSASVPPRARSLTSS*VRHTASLWLQAGHV Trigger: TACGTGACCTGCTTGCAGCCAAAGAGAAGCGGTGTGGCGAACTCAAGAGGAAGTTAGGCTGCGTGCCCTTGGTGGGACTGAGGCAGAATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR CAA 90 bp | CAGGTTGCTTCATCCCCTTTCCCAATCCCAGACAGAAATCTCATTGGCCTCCTAGTCCAGGTCCAGGTCTaGGTAGACGGAGTCCAATCC | + |
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Preference number: 5 (lower is better) Translates to: QVASSPFPIPDRNLIGLLVQVQV*VDGVQS Trigger: GGATTGGACTCCGTCTACCAAGACCTGGACCTGGAC...TAGGAGGCCAATGAGATTTCTGTCTGGGATTGGGAAAGGGGATGAAGCAACCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS CCA 90 bp | CTGAAGCTAGGCGGGATTCATTTGTGGACGCAGAGGTCTCTGTCATaGCATCTGGAACAGACAAGGAAAGATCTTCATTCAGGGAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: LKLGGIHLWTQRSLS*HLEQTRKDLHSGSP Trigger: TGGACTCCCTGAATGAAGATCTTTCCTTGTCTGTTCCAGATGCCATGACAGAGACCTCTGCGTCCACAAATGAATCCCGCCTAGCTTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR CAA 90 bp | TTTAATCCAAGCAAAAACGTGGCCTTTGGGACTCAGTGGAGGGCTGGGATTTATCCTGCAACTCTTGACTaGACTGTTCCCACCAGCCCT | + |
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Preference number: 5 (lower is better) Translates to: FNPSKNVAFGTQWRAGIYPATLD*TVPTSP Trigger: AGGGCTGGTGGGAACAGTCAAGTCAAGAGTTGCAGG...ATAAATCCCAGCCCTCCACTGAGTCCCAAAGGCCACGTTTTTGCTTGGATTAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR CAA 90 bp | CAGCCAGCATTACAGGGGACTAAAATGTTTAAGATGGAGGTGGGAGGAGGCTTAAGTCCAATCCTTGGTTaGAGGAGAAACAGTTGGGGC | + |
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Preference number: 5 (lower is better) Translates to: QPALQGTKMFKMEVGGGLSPILG*RRNSWG Trigger: GCCCCAACTGTTTCTCCTCAAACCAAGGATTGGACT...TAAGCCTCCTCCCACCTCCATCTTAAACATTTTAGTCCCCTGTAATGCTGGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR CAA 90 bp | CATTACAGGGGACTAAAATGTTTAAGATGGAGGTGGGAGGAGGCTTATATTTCTTTTGAGGAGAAACAGTaGGGGCTGGTGGAGCTGACG | + |
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Preference number: 5 (lower is better) Translates to: HYRGLKCLRWRWEEAYISFEEKQ*GLVELT Trigger: CGTCAGCTCCACCAGCCCCAACTGTTTCTCCTCAAA...AGAAATATAAGCCTCCTCCCACCTCCATCTTAAACATTTTAGTCCCCTGTAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR CAA 90 bp | AAGAACAGCAAATATCTATGCAGAAATGGGTGTCCTCGTTATCACAACTGGTCCAGATTTGAGTTCCAGTaGCTCAGCCTCCGTCAGATC | + |
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Preference number: 5 (lower is better) Translates to: KNSKYLCRNGCPRYHNWSRFEFQ*LSLRQI Trigger: GATCTGACGGAGGCTGAGCAACTGGAACTCAAATCT...GGACCAGTTGTGATAACGAGGACACCCATTTCTGCATAGATATTTGCTGTTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR CAA 90 bp | TTAAAGACTTTAGGATCTGGTCTAAGACCCCTTGGAGCCATTACTGAGTCCATTCAGGACAGAAAACAGTaGCTCATCAAGCCCTGCAAC | + |
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Preference number: 5 (lower is better) Translates to: LKTLGSGLRPLGAITESIQDRKQ*LIKPCN Trigger: GTTGCAGGGCTTGATGAGCAACTGTTTTCTGTCCTG...AATGGACTCAGTAATGGCTCCAAGGGGTCTTAGACCAGATCCTAAAGTCTTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS-3UTR CAA 90 bp | ACAACTGGTCCATATCTATGTTCAGAATTAGAGTGGTTTTACCATTGTTGGTTGCAGCCTAACTTCCTCTaGAGTTCGCCACACCGCTTC | + |
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Preference number: 5 (lower is better) Translates to: TTGPYLCSELEWFYHCWLQPNFL*SSPHRF Trigger: GAAGCGGTGTGGCGAACTCAAGAGGAAGTTAGGCTG...CAACCAACAATGGTAAAACCACTCTAATTCTGAACATAGATATGGACCAGTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS TCA 72 bp | CCCCAGAGCCGAGTGTGGATCACTGCCACTCACTGGTaGAGGGAGAAGGCCACTGCCGAGCTCTCTGCCACC | + |
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Preference number: 6 (lower is better) Translates to: PQSRVWITATHW*REKATAELSAT Trigger: GGTGGCAGAGAGCTCGGCAGTGGCCTTCTCCCTTCACCAGTGAGTGGCAGTGATCCACACTCGGCTCTGGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS TCA 72 bp | CCTGCAGATGGCAGAACCCACCGAGGCCAGGGCAGTTaGCGTCTTCTGCTTCATGTAGGTGTTGGAGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: PADGRTHRGQGS*RLLLHVGVGGL Trigger: CAGGCCTCCAACACCTACATGAAGCAGAAGACGTCAACTGCCCTGGCCTCGGTGGGTTCTGCCATCTGCAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS CAA 72 bp | CTCAGTCCCACCAAGGGCACGCAGCCTAACTTCCTCTaGAGTTCGCCACACCGCTTCTCTTTGGCTGCAAGC | + |
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Preference number: 6 (lower is better) Translates to: LSPTKGTQPNFL*SSPHRFSLAAS Trigger: GCTTGCAGCCAAAGAGAAGCGGTGTGGCGAACTCAAGAGGAAGTTAGGCTGCGTGCCCTTGGTGGGACTGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS CAA 72 bp | TCCTGCAGATGGCAGAACCCACCGAGGCCAGGGCAGTaGACGTCTTCTGCTTCATGTAGGTGTTGGAGGCCT | + |
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Preference number: 6 (lower is better) Translates to: SCRWQNPPRPGQ*TSSASCRCWRP Trigger: AGGCCTCCAACACCTACATGAAGCAGAAGACGTCAACTGCCCTGGCCTCGGTGGGTTCTGCCATCTGCAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS CAA 90 bp | AGATTCTGCCTCAGTCCCACCAAGGGCACGCAGCCTAACTTCCTCTaGAGTTCGCCACACCGCTTCTCTTTGGCTGCAAGCAGGTCACGT | + |
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Preference number: 6 (lower is better) Translates to: RFCLSPTKGTQPNFL*SSPHRFSLAASRSR Trigger: ACGTGACCTGCTTGCAGCCAAAGAGAAGCGGTGTGGCGAACTCAAGAGGAAGTTAGGCTGCGTGCCCTTGGTGGGACTGAGGCAGAATCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS TCA 72 bp | TCAGTCCCACCAAGGGCACGCAGCCTAACTTCCTCTTaGGTTCGCCACACCGCTTCTCTTTGGCTGCAAGCA | + |
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Preference number: 6 (lower is better) Translates to: SVPPRARSLTSS*VRHTASLWLQA Trigger: TGCTTGCAGCCAAAGAGAAGCGGTGTGGCGAACTCAAGAGGAAGTTAGGCTGCGTGCCCTTGGTGGGACTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS TCA 72 bp | AAGGCCACTGCCGAGCTCTCTGCCACCTGCAACTCTTaGCTTGACTGTTCCCACCAGCCCTTCAAGAGATCT | + |
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Preference number: 6 (lower is better) Translates to: KATAELSATCNS*LDCSHQPFKRS Trigger: AGATCTCTTGAAGGGCTGGTGGGAACAGTCAAGTCAAGAGTTGCAGGTGGCAGAGAGCTCGGCAGTGGCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS CAA 72 bp | CCACTGCCGAGCTCTCTGCCACCTGCAACTCTTGACTaGACTGTTCCCACCAGCCCTTCAAGAGATCTGAAC | + |
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Preference number: 6 (lower is better) Translates to: PLPSSLPPATLD*TVPTSPSRDLN Trigger: GTTCAGATCTCTTGAAGGGCTGGTGGGAACAGTCAAGTCAAGAGTTGCAGGTGGCAGAGAGCTCGGCAGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS CAA 90 bp | GGCACGCAGCCTAACTTCCTCTTGAGTTCGCCACACCGCTTCTCTTaGGCTGCAAGCAGGTCACGTAAGTTTAAGATCTCTTCCTCCAGT | + |
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Preference number: 6 (lower is better) Translates to: GTQPNFLLSSPHRFS*AASRSRKFKISSSS Trigger: ACTGGAGGAAGAGATCTTAAACTTACGTGACCTGCTTGCAGCCAAAGAGAAGCGGTGTGGCGAACTCAAGAGGAAGTTAGGCTGCGTGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS GCA 72 bp | TGGCTTCAGGACAGAAAACAGTTGCTCATCAAGCCCTaGAACAGTTTCATATCCACTCCCCAGAGCCGAGTG | + |
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Preference number: 6 (lower is better) Translates to: WLQDRKQLLIKP*NSFISTPQSRV Trigger: CACTCGGCTCTGGGGAGTGGATATGAAACTGTTGCAGGGCTTGATGAGCAACTGTTTTCTGTCCTGAAGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS GCA 72 bp | TCCTCCAGTTTAGTGAGCTCAGATTTGAGTTCCAGTTaGTCAGCCTCCGTCAGATCTGGTTCTGAAGCTAGG | + |
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Preference number: 6 (lower is better) Translates to: SSSLVSSDLSSS*SASVRSGSEAR Trigger: CCTAGCTTCAGAACCAGATCTGACGGAGGCTGAGCAACTGGAACTCAAATCTGAGCTCACTAAACTGGAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS CAA 72 bp | CCTAACTTCCTCTTGAGTTCGCCACACCGCTTCTCTTaGGCTGCAAGCAGGTCACGTAAGTTTAAGATCTCT | + |
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Preference number: 6 (lower is better) Translates to: PNFLLSSPHRFS*AASRSRKFKIS Trigger: AGAGATCTTAAACTTACGTGACCTGCTTGCAGCCAAAGAGAAGCGGTGTGGCGAACTCAAGAGGAAGTTAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS CAA 90 bp | TCACGTAAGTTTAAGATCTCTTCCTCCAGTTTAGTGAGCTCAGATTaGAGTTCCAGTTGCTCAGCCTCCGTCAGATCTGGTTCTGAAGCT | + |
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Preference number: 6 (lower is better) Translates to: SRKFKISSSSLVSSD*SSSCSASVRSGSEA Trigger: AGCTTCAGAACCAGATCTGACGGAGGCTGAGCAACTGGAACTCAAATCTGAGCTCACTAAACTGGAGGAAGAGATCTTAAACTTACGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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| CDS CAA 72 bp | TTTAAGATCTCTTCCTCCAGTTTAGTGAGCTCAGATTaGAGTTCCAGTTGCTCAGCCTCCGTCAGATCTGGT | + |
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Preference number: 6 (lower is better) Translates to: FKISSSSLVSSD*SSSCSASVRSG Trigger: ACCAGATCTGACGGAGGCTGAGCAACTGGAACTCAAATCTGAGCTCACTAAACTGGAGGAAGAGATCTTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025727.6 |
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