RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRPC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032839

Ensembl transcript IDs: ENSMUST00000053785.10, ENSMUST00000189137.7, ENSMUST00000190497.2, ENSMUST00000190604.7

Found 210 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTCAGCTGCCCCAGGGTAGGTGGTGCTCACAGACCAGGGCTGTCTaGACTCTGGCCTCAATGCCGGCTCACATTCACCAAGCGCTCTTC +
Preference number: 1 (lower is better)
Translates to: PQLPQGRWCSQTRAV*TLASMPAHIHQALF
Trigger: GAAGAGCGCTTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGAGCACCACCTACCCTGGGGCAGCTGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR CCA 90 bp GGTTCTCCACGGTGGCCTGGTCTGTGCTCTGCATCTTCTGTCGCATaGACGTCAGGTAGCGGTGCACCAGGCAGCACATCACCTTCTGGT +
Preference number: 1 (lower is better)
Translates to: GSPRWPGLCSASSVA*TSGSGAPGSTSPSG
Trigger: ACCAGAAGGTGATGTGCTGCCTGGTGCACCGCTACCTGACGTCCATGCGACAGAAGATGCAGAGCACAGACCAGGCCACCGTGGAGAACC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR TCA 90 bp GCTCTGAGGAAAACACTTTGCAAGAGTTGCTCAAGAGCCTTCAGCTaGAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCA +
Preference number: 1 (lower is better)
Translates to: ALRKTLCKSCSRAFS*KESSFPQGSRPLQP
Trigger: TGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGCTGAAGGCTCTTGAGCAACTCTTGCAAAGTGTTTTCCTCAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR TCA 90 bp CCAGGCCTCTCCAGCCAAGCCCACTGTGACCAGCATGTGACCACATaGATGGTGACAAGCAGCTTCAACTTTGTAATGGTGAGTTTTACT +
Preference number: 1 (lower is better)
Translates to: PGLSSQAHCDQHVTT*MVTSSFNFVMVSFT
Trigger: AGTAAAACTCACCATTACAAAGTTGAAGCTGCTTGTCACCATTCATGTGGTCACATGCTGGTCACAGTGGGCTTGGCTGGAGAGGCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR GCA 90 bp AGAGCAAAGCAGGTGCCAATGAACGAGTGGAAGGTGTCATTGCTTTaGTGTTCGCAGAAGATGCCCACACAGTCCTTCTGCTCTTTGGAA +
Preference number: 1 (lower is better)
Translates to: RAKQVPMNEWKVSLL*CSQKMPTQSFCSLE
Trigger: TTCCAAAGAGCAGAAGGACTGTGTGGGCATCTTCTGCGAACAGCAAAGCAATGACACCTTCCACTCGTTCATTGGCACCTGCTTTGCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR GCA 90 bp ACAAATGTAAAAAGCAAGATGAAAGCTAACACTAGAATCCTCAGCTaGCCCAGGGTAGGTGGTGCTCACAGACCAGGGCTGTCTGCACTC +
Preference number: 1 (lower is better)
Translates to: TNVKSKMKANTRILS*PRVGGAHRPGLSAL
Trigger: GAGTGCAGACAGCCCTGGTCTGTGAGCACCACCTACCCTGGGGCAGCTGAGGATTCTAGTGTTAGCTTTCATCTTGCTTTTTACATTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR TCA 90 bp CCCTTATTTCATTTCGGAATTTTGACAGATCTTGGCGCAGTTCATTaGGGTTCTCCACGGTGGCCTGGTCTGTGCTCTGCATCTTCTGTC +
Preference number: 1 (lower is better)
Translates to: PLFHFGILTDLGAVH*GSPRWPGLCSASSV
Trigger: GACAGAAGATGCAGAGCACAGACCAGGCCACCGTGGAGAACCTCAATGAACTGCGCCAAGATCTGTCAAAATTCCGAAATGAAATAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR CCA 90 bp TCTTCTAGTAGTCCTCGTTTGTCAAGAGGCTCATCGCTAGATGTATaGTTCAGGATAACTTCCAGTTCACGAGAATTCCGGGCTTGTGCG +
Preference number: 1 (lower is better)
Translates to: SSSSPRLSRGSSLDV*FRITSSSREFRACA
Trigger: CGCACAAGCCCGGAATTCTCGTGAACTGGAAGTTATCCTGAACCATACATCTAGCGATGAGCCTCTTGACAAACGAGGACTACTAGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR CCA 90 bp GCCAGAAGATGCCAACTGTCAAAACAGTCATTATCTTCTTACAGGTaGGCTTACGGCGGTAACCTGACATCTGTCCAAACCAAACCGTGT +
Preference number: 1 (lower is better)
Translates to: ARRCQLSKQSLSSYR*AYGGNLTSVQTKPC
Trigger: ACACGGTTTGGTTTGGACAGATGTCAGGTTACCGCCGTAAGCCCACCTGTAAGAAGATAATGACTGTTTTGACAGTTGGCATCTTCTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR TCA 90 bp CAAAACAGTCATTATCTTCTTACAGGTGGGCTTACGGCGGTAACCTaGCATCTGTCCAAACCAAACCGTGTTCAGGAACTGCTGGCAATT +
Preference number: 1 (lower is better)
Translates to: QNSHYLLTGGLTAVT*HLSKPNRVQELLAI
Trigger: AATTGCCAGCAGTTCCTGAACACGGTTTGGTTTGGACAGATGTCAGGTTACCGCCGTAAGCCCACCTGTAAGAAGATAATGACTGTTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR GCA 90 bp AAAGTCATGAAACTTGTTGTGAGCCACCACTTTGAGGGCAAAGGTTaGCAAGTAAAGGGAATTCATAACAAAGCTGAGCTGGTTACGCGA +
Preference number: 1 (lower is better)
Translates to: KVMKLVVSHHFEGKG*QVKGIHNKAELVTR
Trigger: TCGCGTAACCAGCTCAGCTTTGTTATGAATTCCCTTTACTTGGCAACCTTTGCCCTCAAAGTGGTGGCTCACAACAAGTTTCATGACTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR TCA 90 bp CATGCGACAGCTGGGAAACCTTCAGTCACACCCTCACATGAACACTaGAAGGCAGTCAGATTCTCTTTCTATTTCAAATGGAATAAACAG +
Preference number: 1 (lower is better)
Translates to: HATAGKPSVTPSHEH*KAVRFSFYFKWNKQ
Trigger: CTGTTTATTCCATTTGAAATAGAAAGAGAATCTGACTGCCTTTCAGTGTTCATGTGAGGGTGTGACTGAAGGTTTCCCAGCTGTCGCATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR CCA 90 bp GCAAATCCATTTACTGAGGCTACTGATCATATAGCAGATCGTCTTTaGAGAAGGAATAATGTTGAAAGGTGGGGGCAGTGTACATTTGTC +
Preference number: 1 (lower is better)
Translates to: ANPFTEATDHIADRL*RRNNVERWGQCTFV
Trigger: GACAAATGTACACTGCCCCCACCTTTCAACATTATTCCTTCTCCAAAGACGATCTGCTATATGATCAGTAGCCTCAGTAAATGGATTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR GCA 90 bp ATTTGGGAGCTATCAAATAGCATAGTGACAAAACTGGCCAGAAGATaGCAACTGTCAAAACAGTCATTATCTTCTTACAGGTGGGCTTAC +
Preference number: 1 (lower is better)
Translates to: IWELSNSIVTKLARR*QLSKQSLSSYRWAY
Trigger: GTAAGCCCACCTGTAAGAAGATAATGACTGTTTTGACAGTTGGCATCTTCTGGCCAGTTTTGTCACTATGCTATTTGATAGCTCCCAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR TCA 90 bp AAAATAACAGGTGCGACATCCATCGTTGTTGAATATTCTGGATTCTaGATTCGTTCCATAAGTTTTACAATGGTTGGTCTTGATGATCGT +
Preference number: 1 (lower is better)
Translates to: KITGATSIVVEYSGF*IRSISFTMVGLDDR
Trigger: ACGATCATCAAGACCAACCATTGTAAAACTTATGGAACGAATTCAGAATCCAGAATATTCAACAACGATGGATGTCGCACCTGTTATTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190497.2
3UTR-3UTR TCA 90 bp GGCCTGGTCTGTGCTCTGCATCTTCTGTCGCATGGACGTCAGGTAGCGGTGCACCCACCTCCACAAGGCTaGGTTCCTTTAAGTCAGCAC +
Preference number: 2 (lower is better)
Translates to: GLVCALHLLSHGRQVAVHPPPQG*VPLSQH
Trigger: GTGCTGACTTAAAGGAACTCAGCCTTGTGGAGGTGG...GTGCACCGCTACCTGACGTCCATGCGACAGAAGATGCAGAGCACAGACCAGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp CAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAAGCGCTCTTACTCAGAGATCTGCCTaGCTCTGCCTCCTGTATGCT +
Preference number: 2 (lower is better)
Translates to: QGCLHSGLNAGSHSPSALTQRSA*LCLLYA
Trigger: AGCATACAGGAGGCAGAGGCAGGCAGATCTCTGAGT...AAGAGCGCTTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR-3UTR CCA 90 bp TGGCGCAGTTCATTGAGGTTCTCCACGGTGGCCTGGTCTGTGCTCTGCATCTTCTCACAGCCAACAGCATaGGGCTTGGGCAAAGACACA +
Preference number: 2 (lower is better)
Translates to: WRSSLRFSTVAWSVLCIFSQPTA*GLGKDT
Trigger: TGTGTCTTTGCCCAAGCCCCATGCTGTTGGCTGTGA...GAAGATGCAGAGCACAGACCAGGCCACCGTGGAGAACCTCAATGAACTGCGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp GGACTGCAGCTCTTCCCCATAGCTAAACCTGGTGACAAAGATGGCCACGTGCGCCCCACACAGTCCTTCTaGTCTTTGGAAGTGTACCCT +
Preference number: 2 (lower is better)
Translates to: GLQLFPIAKPGDKDGHVRPTQSF*SLEVYP
Trigger: AGGGTACACTTCCAAAGAGCAGAAGGACTGTGTGGG...GCGCACGTGGCCATCTTTGTCACCAGGTTTAGCTATGGGGAAGAGCTGCAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR TCA 90 bp TCTTCTGTCGCATGGACGTCAGGTAGCGGTGCACCAGGCAGCACATCACCTTCTGAACTGCTGGCAATTTaGCTGGGAGACAAACTCCTT +
Preference number: 2 (lower is better)
Translates to: SSVAWTSGSGAPGSTSPSELLAI*LGDKLL
Trigger: AAGGAGTTTGTCTCCCAGTCAAATTGCCAGCAGTTC...AGAAGGTGATGTGCTGCCTGGTGCACCGCTACCTGACGTCCATGCGACAGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR TCA 90 bp CGGAATTTTGACAGATCTTGGCGCAGTTCATTGAGGTTCTCCACGGTGGCCTGGTGTGAGCCACCACTTTaGGGGCAAAGGTTGCCAAGT +
Preference number: 2 (lower is better)
Translates to: RNFDRSWRSSLRFSTVAWCEPPL*GQRLPS
Trigger: ACTTGGCAACCTTTGCCCTCAAAGTGGTGGCTCACA...CCAGGCCACCGTGGAGAACCTCAATGAACTGCGCCAAGATCTGTCAAAATTCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp CAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAAGCGCTCTTCTGAGGAAAACACTTTaGAAGAGTTGCTCAAGAGCC +
Preference number: 2 (lower is better)
Translates to: QGCLHSGLNAGSHSPSALLRKTL*KSCSRA
Trigger: GGCTCTTGAGCAACTCTTGCAAAGTGTTTTCCTCAG...AAGAGCGCTTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR-3UTR TCA 90 bp GCTCTTGTGAAGCATCGCCACGAGCAGCTTCGTCAGCACAATCACAACCACAACCAAAGCAGGTGCCAATaGACGAGTGGAAGGTGTCAT +
Preference number: 2 (lower is better)
Translates to: ALVKHRHEQLRQHNHNHNQSRCQ*TSGRCH
Trigger: ATGACACCTTCCACTCGTTCATTGGCACCTGCTTTG...GTTGTGGTTGTGATTGTGCTGACGAAGCTGCTCGTGGCGATGCTTCACAAGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp TGGCGCAGTTCATTGAGGTTCTCCACGGTGGCCTGGTCTGTGCTCTGCATCTTCTTGCAGAACACAGTGTaGATTCACAGCCAACAGCAT +
Preference number: 2 (lower is better)
Translates to: WRSSLRFSTVAWSVLCIFLQNTV*IHSQQH
Trigger: ATGCTGTTGGCTGTGAATGCACACTGTGTTCTGCAA...GAAGATGCAGAGCACAGACCAGGCCACCGTGGAGAACCTCAATGAACTGCGCCA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp GCTCTTGTGAAGCATCGCCACGAGCAGCTTCGTCAGCACAATCACAACCACAACACCGTGTTCAGGAACTaGTGGCAATTTGACTGGGAG +
Preference number: 2 (lower is better)
Translates to: ALVKHRHEQLRQHNHNHNTVFRN*WQFDWE
Trigger: CTCCCAGTCAAATTGCCAGCAGTTCCTGAACACGGT...GTTGTGGTTGTGATTGTGCTGACGAAGCTGCTCGTGGCGATGCTTCACAAGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp CTTCAGCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGCTGGCATTAAAGGCGTaGATTACCATGACTGGCTTA +
Preference number: 2 (lower is better)
Translates to: LQLKGKQLSSGLQASPAKLALKA*ITMTGL
Trigger: TAAGCCAGTCATGGTAATGCACGCCTTTAATGCCAG...CTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGCTGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR-3UTR CCA 90 bp TTCTCCACGGTGGCCTGGTCTGTGCTCTGCATCTTCTGTCGCATGGACGTCAGGATAACAAAGCTGAGCTaGTTACGCGATTCTTCTAGG +
Preference number: 2 (lower is better)
Translates to: FSTVAWSVLCIFCRMDVRITKLS*LRDSSR
Trigger: CCTAGAAGAATCGCGTAACCAGCTCAGCTTTGTTAT...CCTGACGTCCATGCGACAGAAGATGCAGAGCACAGACCAGGCCACCGTGGAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR CAA 90 bp CAGAGCAAAGCAGGTGCCAATGAACGAGTGGAAGGTGTCATTGCTTaGCTGTTCGCAGAAGATGCCCACACAGTCCTTCTGCTCTTTGGA +
Preference number: 2 (lower is better)
Translates to: QSKAGANERVEGVIA*LFAEDAHTVLLLFG
Trigger: TCCAAAGAGCAGAAGGACTGTGTGGGCATCTTCTGCGAACAGCAAAGCAATGACACCTTCCACTCGTTCATTGGCACCTGCTTTGCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR TCA 90 bp GCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGCCCACATACTGAACTCTGTGTaGACTCCTAAAACAAGAGAT +
Preference number: 2 (lower is better)
Translates to: AERKAAFLRAPGLSSQAHILNSV*TPKTRD
Trigger: ATCTCTTGTTTTAGGAGTTCACACAGAGTTCAGTAT...GTGGGCTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR-3UTR CCA 90 bp AGCAAAGCAGGTGCCAATGAACGAGTGGAAGGTGTCATTGCTTTGCTGTTCGCATCACAGCCAACAGCATaGGGCTTGGGCAAAGACACA +
Preference number: 2 (lower is better)
Translates to: SKAGANERVEGVIALLFASQPTA*GLGKDT
Trigger: TGTGTCTTTGCCCAAGCCCCATGCTGTTGGCTGTGA...TGCGAACAGCAAAGCAATGACACCTTCCACTCGTTCATTGGCACCTGCTTTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp TTCTCCACGGTGGCCTGGTCTGTGCTCTGCATCTTCTGTCGCATGGACGTCAGGTTATCAGAGCTGGACTaGCCAGACATCTATAGATAT +
Preference number: 2 (lower is better)
Translates to: FSTVAWSVLCIFCRMDVRLSELD*PDIYRY
Trigger: ATATCTATAGATGTCTGGCCAGTCCAGCTCTGATAA...CCTGACGTCCATGCGACAGAAGATGCAGAGCACAGACCAGGCCACCGTGGAGAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp GCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGCCCACCTTTGTTTTATAAAATaGAGTGGGCCATGTGTACAC +
Preference number: 2 (lower is better)
Translates to: AERKAAFLRAPGLSSQAHLCFIK*SGPCVH
Trigger: GTGTACACATGGCCCACTCCATTTTATAAAACAAAG...GTGGGCTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR-3UTR TCA 90 bp GTGAAGCATCGCCACGAGCAGCTTCGTCAGCACAATCACAACCACAACATTGTACTTACGGCGGTAACCTaGCATCTGTCCAAACCAAAC +
Preference number: 2 (lower is better)
Translates to: VKHRHEQLRQHNHNHNIVLTAVT*HLSKPN
Trigger: GTTTGGTTTGGACAGATGTCAGGTTACCGCCGTAAG...TACAATGTTGTGGTTGTGATTGTGCTGACGAAGCTGCTCGTGGCGATGCTTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp TGGCGCAGTTCATTGAGGTTCTCCACGGTGGCCTGGTCTGTGCTCTGCATCTTCAATTTTGACAGATCTTaGCGCAGTTCATTGAGGTTC +
Preference number: 2 (lower is better)
Translates to: WRSSLRFSTVAWSVLCIFNFDRS*RSSLRF
Trigger: GAACCTCAATGAACTGCGCCAAGATCTGTCAAAATT...GAAGATGCAGAGCACAGACCAGGCCACCGTGGAGAACCTCAATGAACTGCGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR TCA 90 bp TCACAGACCAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAAGATGGAGTTAAGCACTaGCCAACTAAGAAAACAAAA +
Preference number: 2 (lower is better)
Translates to: SQTRAVCTLASMPAHIHQDGVKH*PTKKTK
Trigger: TTTTGTTTTCTTAGTTGGTCAGTGCTTAACTCCATC...TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR-3UTR GCA 90 bp GCTCTTGTGAAGCATCGCCACGAGCAGCTTCGTCAGCACAATCACAACCACAACAGAATTCCGGGCTTGTaGGAGCAAATCTTTAGCAAA +
Preference number: 2 (lower is better)
Translates to: ALVKHRHEQLRQHNHNHNRIPGL*EQIFSK
Trigger: TTTGCTAAAGATTTGCTCGCACAAGCCCGGAATTCT...GTTGTGGTTGTGATTGTGCTGACGAAGCTGCTCGTGGCGATGCTTCACAAGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp GTGAAGCATCGCCACGAGCAGCTTCGTCAGCACAATCACAACCACAACATTGTAACAAAGATGGCCACGTaGGCTAAGGAGAAGATGTAC +
Preference number: 2 (lower is better)
Translates to: VKHRHEQLRQHNHNHNIVTKMAT*AKEKMY
Trigger: GTACATCTTCTCCTTAGCGCACGTGGCCATCTTTGT...TACAATGTTGTGGTTGTGATTGTGCTGACGAAGCTGCTCGTGGCGATGCTTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp TCATCGCTAGATGTATGGTTCAGGATAACTTCCAGTTCACGAGAATTCCGGGCTCAACAGCATGGGGCTTaGGCAAAGACACATCCTGCT +
Preference number: 2 (lower is better)
Translates to: SSLDVWFRITSSSREFRAQQHGA*AKTHPA
Trigger: AGCAGGATGTGTCTTTGCCCAAGCCCCATGCTGTTG...AGCCCGGAATTCTCGTGAACTGGAAGTTATCCTGAACCATACATCTAGCGATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR CAA 90 bp TCCCTTATTTCATTTCGGAATTTTGACAGATCTTGGCGCAGTTCATaGAGGTTCTCCACGGTGGCCTGGTCTGTGCTCTGCATCTTCTGT +
Preference number: 2 (lower is better)
Translates to: SLISFRNFDRSWRSS*RFSTVAWSVLCIFC
Trigger: ACAGAAGATGCAGAGCACAGACCAGGCCACCGTGGAGAACCTCAATGAACTGCGCCAAGATCTGTCAAAATTCCGAAATGAAATAAGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR TCA 90 bp CTTGTTGTGAGCCACCACTTTGAGGGCAAAGGTTGCCAAGTAAAGGGAATTCATCTTACGGCGGTAACCTaGCATCTGTCCAAACCAAAC +
Preference number: 2 (lower is better)
Translates to: LVVSHHFEGKGCQVKGIHLTAVT*HLSKPN
Trigger: GTTTGGTTTGGACAGATGTCAGGTTACCGCCGTAAG...ATGAATTCCCTTTACTTGGCAACCTTTGCCCTCAAAGTGGTGGCTCACAACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR TCA 90 bp TCTTGTAACATCTGTCCCATTGAAATCTGCAGTGGGCCCAAAATAGAGCTGGTTTGTGAGCCACCACTTTaGGGGCAAAGGTTGCCAAGT +
Preference number: 2 (lower is better)
Translates to: SCNICPIEICSGPKIELVCEPPL*GQRLPS
Trigger: ACTTGGCAACCTTTGCCCTCAAAGTGGTGGCTCACA...AACCAGCTCTATTTTGGGCCCACTGCAGATTTCAATGGGACAGATGTTACAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR TCA 90 bp CGGAATTTTGACAGATCTTGGCGCAGTTCATTGAGGTTCTCCACGGTGGCCTGGTCCTTTAAACTGTTTTaGCGTTTGACCTTGCCTTTC +
Preference number: 2 (lower is better)
Translates to: RNFDRSWRSSLRFSTVAWSFKLF*RLTLPF
Trigger: GAAAGGCAAGGTCAAACGTCAAAACAGTTTAAAGGA...CCAGGCCACCGTGGAGAACCTCAATGAACTGCGCCAAGATCTGTCAAAATTCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR TCA 90 bp CAGCTGGAAGCTCTTGTGAAGCATCGCCACGAGCAGCTTCGTCAGCACAATCACGACATCCATCGTTGTTaGATATTCTGGATTCTGAAT +
Preference number: 2 (lower is better)
Translates to: QLEALVKHRHEQLRQHNHDIHRC*IFWILN
Trigger: ATTCAGAATCCAGAATATTCAACAACGATGGATGTC...GTGATTGTGCTGACGAAGCTGCTCGTGGCGATGCTTCACAAGAGCTTCCAGCTG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190497.2
3UTR-3UTR GCA 90 bp GCTCTTGTGAAGCATCGCCACGAGCAGCTTCGTCAGCACAATCACAACCACAACTTTGAGGGCAAAGGTTaGCAAGTAAAGGGAATTCAT +
Preference number: 2 (lower is better)
Translates to: ALVKHRHEQLRQHNHNHNFEGKG*QVKGIH
Trigger: ATGAATTCCCTTTACTTGGCAACCTTTGCCCTCAAA...GTTGTGGTTGTGATTGTGCTGACGAAGCTGCTCGTGGCGATGCTTCACAAGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp ACAGTCCTTCTGCTCTTTGGAAGTGTACCCTTTGTCATAGAGCTGAGTCAGTCCAAGGTGTCATTGCTTTaGTGTTCGCAGAAGATGCCC +
Preference number: 2 (lower is better)
Translates to: TVLLLFGSVPFVIELSQSKVSLL*CSQKMP
Trigger: GGGCATCTTCTGCGAACAGCAAAGCAATGACACCTT...GGACTGACTCAGCTCTATGACAAAGGGTACACTTCCAAAGAGCAGAAGGACTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp TCTTGTAACATCTGTCCCATTGAAATCTGCAGTGGGCCCAAAATAGAGCTGGTTCAACAGCATGGGGCTTaGGCAAAGACACATCCTGCT +
Preference number: 2 (lower is better)
Translates to: SCNICPIEICSGPKIELVQQHGA*AKTHPA
Trigger: AGCAGGATGTGTCTTTGCCCAAGCCCCATGCTGTTG...AACCAGCTCTATTTTGGGCCCACTGCAGATTTCAATGGGACAGATGTTACAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp CGGAATTTTGACAGATCTTGGCGCAGTTCATTGAGGTTCTCCACGGTGGCCTGGTCATCGCTAGATGTATaGTTCAGGATAACTTCCAGT +
Preference number: 2 (lower is better)
Translates to: RNFDRSWRSSLRFSTVAWSSLDV*FRITSS
Trigger: ACTGGAAGTTATCCTGAACCATACATCTAGCGATGA...CCAGGCCACCGTGGAGAACCTCAATGAACTGCGCCAAGATCTGTCAAAATTCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp CAACATTGTAAGTTCCAACAATCACAGCTCCAACGAAGGACTGCAGCTCTTCCCTGCTGGCAATTTGACTaGGAGACAAACTCCTTCTGG +
Preference number: 2 (lower is better)
Translates to: QHCKFQQSQLQRRTAALPCWQFD*ETNSFW
Trigger: CCAGAAGGAGTTTGTCTCCCAGTCAAATTGCCAGCA...GGGAAGAGCTGCAGTCCTTCGTTGGAGCTGTGATTGTTGGAACTTACAATGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp CCACACAGTCCTTCTGCTCTTTGGAAGTGTACCCTTTGTCATAGAGCTGAGTCATTATCTTCTTACAGGTaGGCTTACGGCGGTAACCTG +
Preference number: 2 (lower is better)
Translates to: PHSPSALWKCTLCHRAESLSSYR*AYGGNL
Trigger: CAGGTTACCGCCGTAAGCCCACCTGTAAGAAGATAA...TGACTCAGCTCTATGACAAAGGGTACACTTCCAAAGAGCAGAAGGACTGTGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp GCTCTTGTGAAGCATCGCCACGAGCAGCTTCGTCAGCACAATCACAACCACAACTATTCTCTCCAGGGCTaGTCCCATTGTATTTTTCTT +
Preference number: 2 (lower is better)
Translates to: ALVKHRHEQLRQHNHNHNYSLQG*SHCIFL
Trigger: AAGAAAAATACAATGGGACCAGCCCTGGAGAGAATA...GTTGTGGTTGTGATTGTGCTGACGAAGCTGCTCGTGGCGATGCTTCACAAGAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp CTTCAGCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGTTTTATAAAATGGAGTaGGCCATGTGTACACTGATA +
Preference number: 2 (lower is better)
Translates to: LQLKGKQLSSGLQASPAKFYKME*AMCTLI
Trigger: TATCAGTGTACACATGGCCCACTCCATTTTATAAAA...CTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGCTGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR-3UTR TCA 90 bp CGGAATTTTGACAGATCTTGGCGCAGTTCATTGAGGTTCTCCACGGTGGCCTGGATGATTCTGCCAAATTaGGATTTGGGAGCTATCAAA +
Preference number: 2 (lower is better)
Translates to: RNFDRSWRSSLRFSTVAWMILPN*DLGAIK
Trigger: TTTGATAGCTCCCAAATCTCAATTTGGCAGAATCAT...CCAGGCCACCGTGGAGAACCTCAATGAACTGCGCCAAGATCTGTCAAAATTCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp AAAGCAAAAAGCCCTTCTGCTACAAGCGTGGGGTGGAATGCATCCCAGTCCTTCTTTGAGGGCAAAGGTTaGCAAGTAAAGGGAATTCAT +
Preference number: 2 (lower is better)
Translates to: KAKSPSATSVGWNASQSFFEGKG*QVKGIH
Trigger: ATGAATTCCCTTTACTTGGCAACCTTTGCCCTCAAA...GAAGGACTGGGATGCATTCCACCCCACGCTTGTAGCAGAAGGGCTTTTTGCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp TTTGTCATAGAGCTGAGTCAGTCCAATCGTGAAGGAAAACAGAACAAGGAGGAAGCTGTTCGCAGAAGATaGCCACACAGTCCTTCTGCT +
Preference number: 2 (lower is better)
Translates to: FVIELSQSNREGKQNKEEAVRRR*PHSPSA
Trigger: AGCAGAAGGACTGTGTGGGCATCTTCTGCGAACAGC...TTCCTCCTTGTTCTGTTTTCCTTCACGATTGGACTGACTCAGCTCTATGACAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp AAAGCAAAAAGCCCTTCTGCTACAAGCGTGGGGTGGAATGCATCCCAGTCCTTCTCATCGCTAGATGTATaGTTCAGGATAACTTCCAGT +
Preference number: 2 (lower is better)
Translates to: KAKSPSATSVGWNASQSFSSLDV*FRITSS
Trigger: ACTGGAAGTTATCCTGAACCATACATCTAGCGATGA...GAAGGACTGGGATGCATTCCACCCCACGCTTGTAGCAGAAGGGCTTTTTGCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp TCTTCTAGTAGTCCTCGTTTGTCAAGAGGCTCATCGCTAGATGTATGGTTCAGGGTGTTCAGGAACTGCTaGCAATTTGACTGGGAGACA +
Preference number: 2 (lower is better)
Translates to: SSSSPRLSRGSSLDVWFRVFRNC*QFDWET
Trigger: TGTCTCCCAGTCAAATTGCCAGCAGTTCCTGAACAC...CCTGAACCATACATCTAGCGATGAGCCTCTTGACAAACGAGGACTACTAGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp CTTCTGCTACAAGCGTGGGGTGGAATGCATCCCAGTCCTTCCGGTCAGCAAAGTTGCCAAATTGAGATTTaGGAGCTATCAAATAGCATA +
Preference number: 2 (lower is better)
Translates to: LLLQAWGGMHPSPSGQQSCQIEI*ELSNSI
Trigger: TATGCTATTTGATAGCTCCCAAATCTCAATTTGGCA...ACTTTGCTGACCGGAAGGACTGGGATGCATTCCACCCCACGCTTGTAGCAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp TTTGTCATAGAGCTGAGTCAGTCCAATCGTGAAGGAAAACAGAACAAGGAGGAACTTCTGCTACAAGCGTaGGGTGGAATGCATCCCAGT +
Preference number: 2 (lower is better)
Translates to: FVIELSQSNREGKQNKEELLLQA*GGMHPS
Trigger: ACTGGGATGCATTCCACCCCACGCTTGTAGCAGAAG...TTCCTCCTTGTTCTGTTTTCCTTCACGATTGGACTGACTCAGCTCTATGACAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR TCA 90 bp CAACCACAACATTGTAAGTTCCAACAATCACAGCTCCAACGAAGGACTGCAGCTGAGTCAGTCCAATCGTaGAGGAAAACAGAACAAGGA +
Preference number: 2 (lower is better)
Translates to: QPQHCKFQQSQLQRRTAAESVQS*RKTEQG
Trigger: TCCTTGTTCTGTTTTCCTTCACGATTGGACTGACTC...AGCTGCAGTCCTTCGTTGGAGCTGTGATTGTTGGAACTTACAATGTTGTGGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp GTCCTTCTGCTCTTTGGAAGTGTACCCTTTGTCATAGAGCTGAGTCAGTCCAATTTGCAGAACACAGTGTaGATTCACAGCCAACAGCAT +
Preference number: 2 (lower is better)
Translates to: VLLLFGSVPFVIELSQSNLQNTV*IHSQQH
Trigger: ATGCTGTTGGCTGTGAATGCACACTGTGTTCTGCAA...ATTGGACTGACTCAGCTCTATGACAAAGGGTACACTTCCAAAGAGCAGAAGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp CCACACAGTCCTTCTGCTCTTTGGAAGTGTACCCTTTGTCATAGAGCTGAGTCAAGAATTCCGGGCTTGTaGGAGCAAATCTTTAGCAAA +
Preference number: 2 (lower is better)
Translates to: PHSPSALWKCTLCHRAESRIPGL*EQIFSK
Trigger: TTTGCTAAAGATTTGCTCGCACAAGCCCGGAATTCT...TGACTCAGCTCTATGACAAAGGGTACACTTCCAAAGAGCAGAAGGACTGTGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp CCACACAGTCCTTCTGCTCTTTGGAAGTGTACCCTTTGTCATAGAGCTGAGTCAAAACTGGCCAGAAGATaGCAACTGTCAAAACAGTCA +
Preference number: 2 (lower is better)
Translates to: PHSPSALWKCTLCHRAESKLARR*QLSKQS
Trigger: TGACTGTTTTGACAGTTGGCATCTTCTGGCCAGTTT...TGACTCAGCTCTATGACAAAGGGTACACTTCCAAAGAGCAGAAGGACTGTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp CAGCACAATCACAACCACAACATTGTAAGTTCCAACAATCACAGCTCCAACGAACCCACACAGTCCTTCTaGTCTTTGGAAGTGTACCCT +
Preference number: 2 (lower is better)
Translates to: QHNHNHNIVSSNNHSSNEPTQSF*SLEVYP
Trigger: AGGGTACACTTCCAAAGAGCAGAAGGACTGTGTGGG...TTCGTTGGAGCTGTGATTGTTGGAACTTACAATGTTGTGGTTGTGATTGTGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp CACGAGCAGCTTCGTCAGCACAATCACAACCACAACATTGTAAGTTCCAACAATAAGGTGTCATTGCTTTaGTGTTCGCAGAAGATGCCC +
Preference number: 2 (lower is better)
Translates to: HEQLRQHNHNHNIVSSNNKVSLL*CSQKMP
Trigger: GGGCATCTTCTGCGAACAGCAAAGCAATGACACCTT...ATTGTTGGAACTTACAATGTTGTGGTTGTGATTGTGCTGACGAAGCTGCTCGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp CTTCAGTCACACCCTCACATGAACACTGAAAGGCAGTCAGATTCTCTTTCTATTTTGAACTCAGAGATCTaGCTGCCTCTGCCTCCTGTA +
Preference number: 2 (lower is better)
Translates to: LQSHPHMNTERQSDSLSILNSEI*LPLPPV
Trigger: TACAGGAGGCAGAGGCAGGCAGATCTCTGAGTTCAA...AATAGAAAGAGAATCTGACTGCCTTTCAGTGTTCATGTGAGGGTGTGACTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR-3UTR CCA 90 bp ACAGTCCTTCTGCTCTTTGGAAGTGTACCCTTTGTCATAGAGCTGAGTCAGTCCATAACAAAGCTGAGCTaGTTACGCGATTCTTCTAGG +
Preference number: 2 (lower is better)
Translates to: TVLLLFGSVPFVIELSQSITKLS*LRDSSR
Trigger: CCTAGAAGAATCGCGTAACCAGCTCAGCTTTGTTAT...GGACTGACTCAGCTCTATGACAAAGGGTACACTTCCAAAGAGCAGAAGGACTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR TCA 90 bp CTTCAGTCACACCCTCACATGAACACTGAAAGGCAGTCAGATTCTCTTTCTATTTCAAGAGCCTTCAGCTaGAAGGAAAGCAGCTTTCCT +
Preference number: 2 (lower is better)
Translates to: LQSHPHMNTERQSDSLSISRAFS*KESSFP
Trigger: AGGAAAGCTGCTTTCCTTTCAGCTGAAGGCTCTTGA...AATAGAAAGAGAATCTGACTGCCTTTCAGTGTTCATGTGAGGGTGTGACTGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR-3UTR GCA 90 bp CAGCACAATCACAACCACAACATTGTAAGTTCCAACAATCACAGCTCCAACGAAACAAAGATGGCCACGTaGGCTAAGGAGAAGATGTAC +
Preference number: 2 (lower is better)
Translates to: QHNHNHNIVSSNNHSSNETKMAT*AKEKMY
Trigger: GTACATCTTCTCCTTAGCGCACGTGGCCATCTTTGT...TTCGTTGGAGCTGTGATTGTTGGAACTTACAATGTTGTGGTTGTGATTGTGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp GTGAAGCATCGCCACGAGCAGCTTCGTCAGCACAATCACAACCACAACATTGTATTTATCCTCATGATTTaGTATCAGCTGGAAGCTCTT +
Preference number: 2 (lower is better)
Translates to: VKHRHEQLRQHNHNHNIVFILMI*YQLEAL
Trigger: AAGAGCTTCCAGCTGATAGCAAATCATGAGGATAAA...TACAATGTTGTGGTTGTGATTGTGCTGACGAAGCTGCTCGTGGCGATGCTTCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR GCA 90 bp CACGAGCAGCTTCGTCAGCACAATCACAACCACAACATTGTAAGTTCCAACAATAAACTGGCCAGAAGATaGCAACTGTCAAAACAGTCA +
Preference number: 2 (lower is better)
Translates to: HEQLRQHNHNHNIVSSNNKLARR*QLSKQS
Trigger: TGACTGTTTTGACAGTTGGCATCTTCTGGCCAGTTT...ATTGTTGGAACTTACAATGTTGTGGTTGTGATTGTGCTGACGAAGCTGCTCGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR TCA 90 bp AAACTTCCATTCTTTATCCTCATGATTTGCTATCAGCTGGAAGCTCTTGTGAAGGAACTGCTGGCAATTTaGCTGGGAGACAAACTCCTT +
Preference number: 2 (lower is better)
Translates to: KLPFFILMICYQLEALVKELLAI*LGDKLL
Trigger: AAGGAGTTTGTCTCCCAGTCAAATTGCCAGCAGTTC...CTTCACAAGAGCTTCCAGCTGATAGCAAATCATGAGGATAAAGAATGGAAGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR TCA 90 bp GTCCTTCTGCTCTTTGGAAGTGTACCCTTTGTCATAGAGCTGAGTCAGTCCAATCAGTCTCTTAATGTCTaGCCAAATCATCCCAATAAT +
Preference number: 2 (lower is better)
Translates to: VLLLFGSVPFVIELSQSNQSLNV*PNHPNN
Trigger: ATTATTGGGATGATTTGGTCAGACATTAAGAGACTG...ATTGGACTGACTCAGCTCTATGACAAAGGGTACACTTCCAAAGAGCAGAAGGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR TCA 90 bp CAACCACAACATTGTAAGTTCCAACAATCACAGCTCCAACGAAGGACTGCAGCTGATCGTTTTGGCCGATaGTTAAGTAGTATATCAACA +
Preference number: 2 (lower is better)
Translates to: QPQHCKFQQSQLQRRTAADRFGR*LSSIST
Trigger: TGTTGATATACTACTTAATCATCGGCCAAAACGATC...AGCTGCAGTCCTTCGTTGGAGCTGTGATTGTTGGAACTTACAATGTTGTGGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190497.2
3UTR-3UTR GCA 90 bp GCTACTGATCATATAGCAGATCGTCTTTGGAGAAGGAATAATGTTGAAAGGTGGTGTCCCATTGAAATCTaGAGTGGGCCCAAAATAGAG +
Preference number: 2 (lower is better)
Translates to: ATDHIADRLWRRNNVERWCPIEI*SGPKIE
Trigger: CTCTATTTTGGGCCCACTGCAGATTTCAATGGGACA...CCACCTTTCAACATTATTCCTTCTCCAAAGACGATCTGCTATATGATCAGTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp ACAGTCCTTCTGCTCTTTGGAAGTGTACCCTTTGTCATAGAGCTGAGTCAGTCCTGCCAAATTGAGATTTaGGAGCTATCAAATAGCATA +
Preference number: 2 (lower is better)
Translates to: TVLLLFGSVPFVIELSQSCQIEI*ELSNSI
Trigger: TATGCTATTTGATAGCTCCCAAATCTCAATTTGGCA...GGACTGACTCAGCTCTATGACAAAGGGTACACTTCCAAAGAGCAGAAGGACTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CCA 90 bp TTTGTCATAGAGCTGAGTCAGTCCAATCGTGAAGGAAAACAGAACAAGGAGGAAAGTCCTTCTGCTCTTTaGAAGTGTACCCTTTGTCAT +
Preference number: 2 (lower is better)
Translates to: FVIELSQSNREGKQNKEESPSAL*KCTLCH
Trigger: ATGACAAAGGGTACACTTCCAAAGAGCAGAAGGACT...TTCCTCCTTGTTCTGTTTTCCTTCACGATTGGACTGACTCAGCTCTATGACAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR CAA 90 bp AGTTTCAGACGACTTAAGTTCATTCTTTCTTCTAGTAGTCCTCGTTaGTCAAGAGGCTCATCGCTAGATGTATGGTTCAGGATAACTTCC +
Preference number: 2 (lower is better)
Translates to: SFRRLKFILSSSSPR*SRGSSLDVWFRITS
Trigger: GGAAGTTATCCTGAACCATACATCTAGCGATGAGCCTCTTGACAAACGAGGACTACTAGAAGAAAGAATGAACTTAAGTCGTCTGAAACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR TCA 90 bp AAACTTCCATTCTTTATCCTCATGATTTGCTATCAGCTGGAAGCTCTTGTGAAGCAGTCTCTTAATGTCTaGCCAAATCATCCCAATAAT +
Preference number: 2 (lower is better)
Translates to: KLPFFILMICYQLEALVKQSLNV*PNHPNN
Trigger: ATTATTGGGATGATTTGGTCAGACATTAAGAGACTG...CTTCACAAGAGCTTCCAGCTGATAGCAAATCATGAGGATAAAGAATGGAAGTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR GCA 72 bp CCCCAGGGTAGGTGGTGCTCACAGACCAGGGCTGTCTaGACTCTGGCCTCAATGCCGGCTCACATTCACCAA +
Preference number: 3 (lower is better)
Translates to: PQGRWCSQTRAV*TLASMPAHIHQ
Trigger: TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGAGCACCACCTACCCTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR CCA 72 bp CGGTGGCCTGGTCTGTGCTCTGCATCTTCTGTCGCATaGACGTCAGGTAGCGGTGCACCAGGCAGCACATCA +
Preference number: 3 (lower is better)
Translates to: RWPGLCSASSVA*TSGSGAPGSTS
Trigger: TGATGTGCTGCCTGGTGCACCGCTACCTGACGTCCATGCGACAGAAGATGCAGAGCACAGACCAGGCCACCG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR CCA 72 bp TCTTGGCGCAGTTCATTGAGGTTCTCCACGGTGGCCTaGTCTGTGCTCTGCATCTTCTGTCGCATGGACGTC +
Preference number: 3 (lower is better)
Translates to: SWRSSLRFSTVA*SVLCIFCRMDV
Trigger: GACGTCCATGCGACAGAAGATGCAGAGCACAGACCAGGCCACCGTGGAGAACCTCAATGAACTGCGCCAAGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp GGCCTGGTCTGTGCTCTGCATCTTCTGTCGCATGGACGTCAGGTAGCGGTGCACTCTAGTAGTCCTCGTTaGTCAAGAGGCTCATCGCTA +
Preference number: 3 (lower is better)
Translates to: GLVCALHLLSHGRQVAVHSSSPR*SRGSSL
Trigger: TAGCGATGAGCCTCTTGACAAACGAGGACTACTAGA...GTGCACCGCTACCTGACGTCCATGCGACAGAAGATGCAGAGCACAGACCAGGCC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp TTCTCCACGGTGGCCTGGTCTGTGCTCTGCATCTTCTGTCGCATGGACGTCAGGGGAACTGCTGGCAATTaGACTGGGAGACAAACTCCT +
Preference number: 3 (lower is better)
Translates to: FSTVAWSVLCIFCRMDVRGTAGN*TGRQTP
Trigger: AGGAGTTTGTCTCCCAGTCAAATTGCCAGCAGTTCC...CCTGACGTCCATGCGACAGAAGATGCAGAGCACAGACCAGGCCACCGTGGAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp TTCTCCACGGTGGCCTGGTCTGTGCTCTGCATCTTCTGTCGCATGGACGTCAGGGTAACATCTGTCCCATaGAAATCTGCAGTGGGCCCA +
Preference number: 3 (lower is better)
Translates to: FSTVAWSVLCIFCRMDVRVTSVP*KSAVGP
Trigger: TGGGCCCACTGCAGATTTCAATGGGACAGATGTTAC...CCTGACGTCCATGCGACAGAAGATGCAGAGCACAGACCAGGCCACCGTGGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp CATCTTCTGTCGCATGGACGTCAGGTAGCGGTGCACCAGGCAGCACATCACCTTGAGTGGAAGGTGTCATaGCTTTGCTGTTCGCAGAAG +
Preference number: 3 (lower is better)
Translates to: HLLSHGRQVAVHQAAHHLEWKVS*LCCSQK
Trigger: CTTCTGCGAACAGCAAAGCAATGACACCTTCCACTC...AAGGTGATGTGCTGCCTGGTGCACCGCTACCTGACGTCCATGCGACAGAAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp CAGCTGGAAGCTCTTGTGAAGCATCGCCACGAGCAGCTTCGTCAGCACAATCACGGAACTGCTGGCAATTaGACTGGGAGACAAACTCCT +
Preference number: 3 (lower is better)
Translates to: QLEALVKHRHEQLRQHNHGTAGN*TGRQTP
Trigger: AGGAGTTTGTCTCCCAGTCAAATTGCCAGCAGTTCC...GTGATTGTGCTGACGAAGCTGCTCGTGGCGATGCTTCACAAGAGCTTCCAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp CAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAAGCGCTCTTTCTGAGGAAAACACTTaGCAAGAGTTGCTCAAGAGC +
Preference number: 3 (lower is better)
Translates to: QGCLHSGLNAGSHSPSALSEENT*QELLKS
Trigger: GCTCTTGAGCAACTCTTGCAAAGTGTTTTCCTCAGA...AAGAGCGCTTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR GCA 72 bp CAGGTGCCAATGAACGAGTGGAAGGTGTCATTGCTTTaGTGTTCGCAGAAGATGCCCACACAGTCCTTCTGC +
Preference number: 3 (lower is better)
Translates to: QVPMNEWKVSLL*CSQKMPTQSFC
Trigger: GCAGAAGGACTGTGTGGGCATCTTCTGCGAACAGCAAAGCAATGACACCTTCCACTCGTTCATTGGCACCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR CCA 72 bp CGTTTGCAAAAGCAAAAAGCCCTTCTGCTACAAGCGTaGGGTGGAATGCATCCCAGTCCTTCCGGTCAGCAA +
Preference number: 3 (lower is better)
Translates to: RLQKQKALLLQA*GGMHPSPSGQQ
Trigger: TTGCTGACCGGAAGGACTGGGATGCATTCCACCCCACGCTTGTAGCAGAAGGGCTTTTTGCTTTTGCAAACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp CCCTTTGTCATAGAGCTGAGTCAGTCCAATCGTGAAGGAAAACAGAACAAGGAGCCAACAGCATGGGGCTaGGGCAAAGACACATCCTGC +
Preference number: 3 (lower is better)
Translates to: PFVIELSQSNREGKQNKEPTAWG*GKDTSC
Trigger: GCAGGATGTGTCTTTGCCCAAGCCCCATGCTGTTGG...CTCCTTGTTCTGTTTTCCTTCACGATTGGACTGACTCAGCTCTATGACAAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR TCA 72 bp CATTTCGGAATTTTGACAGATCTTGGCGCAGTTCATTaGGGTTCTCCACGGTGGCCTGGTCTGTGCTCTGCA +
Preference number: 3 (lower is better)
Translates to: HFGILTDLGAVH*GSPRWPGLCSA
Trigger: TGCAGAGCACAGACCAGGCCACCGTGGAGAACCTCAATGAACTGCGCCAAGATCTGTCAAAATTCCGAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR GCA 72 bp AGCAAAAAGCCCTTCTGCTACAAGCGTGGGGTGGAATaGATCCCAGTCCTTCCGGTCAGCAAAGTCATGAAA +
Preference number: 3 (lower is better)
Translates to: SKKPFCYKRGVE*IPVLPVSKVMK
Trigger: TTTCATGACTTTGCTGACCGGAAGGACTGGGATGCATTCCACCCCACGCTTGTAGCAGAAGGGCTTTTTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR GCA 72 bp GGCTCACATTCACCAAGCGCTCTTCAAGAATGTTCATaGGACAGCTGGGAAACCTTCAGTCACACCCTCACA +
Preference number: 3 (lower is better)
Translates to: GSHSPSALQECS*DSWETFSHTLT
Trigger: TGTGAGGGTGTGACTGAAGGTTTCCCAGCTGTCGCATGAACATTCTTGAAGAGCGCTTGGTGAATGTGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR-3UTR CAA 90 bp TGTCATTGCTTTGCTGTTCGCAGAAGATGCCCACACAGTCCTTCTGCTCTTTGGGTAACATCTGTCCCATaGAAATCTGCAGTGGGCCCA +
Preference number: 3 (lower is better)
Translates to: CHCFAVRRRCPHSPSALWVTSVP*KSAVGP
Trigger: TGGGCCCACTGCAGATTTCAATGGGACAGATGTTAC...CCAAAGAGCAGAAGGACTGTGTGGGCATCTTCTGCGAACAGCAAAGCAATGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR GCA 72 bp CCTGACATCTGTCCAAACCAAACCGTGTTCAGGAACTaGTGGCAATTTGACTGGGAGACAAACTCCTTCTGG +
Preference number: 3 (lower is better)
Translates to: PDICPNQTVFRN*WQFDWETNSFW
Trigger: CCAGAAGGAGTTTGTCTCCCAGTCAAATTGCCAGCAGTTCCTGAACACGGTTTGGTTTGGACAGATGTCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR GCA 72 bp AGTGGAAGGTGTCATTGCTTTGCTGTTCGCAGAAGATaGCCACACAGTCCTTCTGCTCTTTGGAAGTGTACC +
Preference number: 3 (lower is better)
Translates to: SGRCHCFAVRRR*PHSPSALWKCT
Trigger: GGTACACTTCCAAAGAGCAGAAGGACTGTGTGGGCATCTTCTGCGAACAGCAAAGCAATGACACCTTCCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp ATCTGTCCAAACCAAACCGTGTTCAGGAACTGCTGGCAATTTGACTGGGAGACAACGAGAATTCCGGGCTaGTGCGAGCAAATCTTTAGC +
Preference number: 3 (lower is better)
Translates to: ICPNQTVFRNCWQFDWETTRIPG*CEQIFS
Trigger: GCTAAAGATTTGCTCGCACAAGCCCGGAATTCTCGT...TGTCTCCCAGTCAAATTGCCAGCAGTTCCTGAACACGGTTTGGTTTGGACAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp TGTCATTGCTTTGCTGTTCGCAGAAGATGCCCACACAGTCCTTCTGCTCTTTGGTCTAGTAGTCCTCGTTaGTCAAGAGGCTCATCGCTA +
Preference number: 3 (lower is better)
Translates to: CHCFAVRRRCPHSPSALWSSSPR*SRGSSL
Trigger: TAGCGATGAGCCTCTTGACAAACGAGGACTACTAGA...CCAAAGAGCAGAAGGACTGTGTGGGCATCTTCTGCGAACAGCAAAGCAATGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp AGCAAAGCAGGTGCCAATGAACGAGTGGAAGGTGTCATTGCTTTGCTGTTCGCACAGTCCTTCTGCTCTTaGGAAGTGTACCCTTTGTCA +
Preference number: 3 (lower is better)
Translates to: SKAGANERVEGVIALLFAQSFCS*EVYPLS
Trigger: TGACAAAGGGTACACTTCCAAAGAGCAGAAGGACTG...TGCGAACAGCAAAGCAATGACACCTTCCACTCGTTCATTGGCACCTGCTTTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR TCA 72 bp CATTATCTTCTTACAGGTGGGCTTACGGCGGTAACCTaGCATCTGTCCAAACCAAACCGTGTTCAGGAACTG +
Preference number: 3 (lower is better)
Translates to: HYLLTGGLTAVT*HLSKPNRVQEL
Trigger: CAGTTCCTGAACACGGTTTGGTTTGGACAGATGTCAGGTTACCGCCGTAAGCCCACCTGTAAGAAGATAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp CGGAATTTTGACAGATCTTGGCGCAGTTCATTGAGGTTCTCCACGGTGGCCTGGTTTCATTTCGGAATTTaGACAGATCTTGGCGCAGTT +
Preference number: 3 (lower is better)
Translates to: RNFDRSWRSSLRFSTVAWFHFGI*TDLGAV
Trigger: AACTGCGCCAAGATCTGTCAAAATTCCGAAATGAAA...CCAGGCCACCGTGGAGAACCTCAATGAACTGCGCCAAGATCTGTCAAAATTCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp TCTATAGATATCAAGACGAAACCTGGAATGTCTGAGGCTGTCCTTCTTGTTTTTCCAACAGCATGGGGCTaGGGCAAAGACACATCCTGC +
Preference number: 3 (lower is better)
Translates to: SIDIKTKPGMSEAVLLVFPTAWG*GKDTSC
Trigger: GCAGGATGTGTCTTTGCCCAAGCCCCATGCTGTTGG...AAAAACAAGAAGGACAGCCTCAGACATTCCAGGTTTCGTCTTGATATCTATAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp CATCGCCACGAGCAGCTTCGTCAGCACAATCACAACCACAACATTGTAAGTTCCCAAACGCTCTCAGAATaGGATCTTCCTCTGTTAACA +
Preference number: 3 (lower is better)
Translates to: HRHEQLRQHNHNHNIVSSQTLSE*DLPLLT
Trigger: TGTTAACAGAGGAAGATCCAATTCTGAGAGCGTTTG...GGAACTTACAATGTTGTGGTTGTGATTGTGCTGACGAAGCTGCTCGTGGCGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp GCTCTTGTGAAGCATCGCCACGAGCAGCTTCGTCAGCACAATCACAACCACAACTCCTTCTGGTTATATTaGATAGCAAGTTTCAGACGA +
Preference number: 3 (lower is better)
Translates to: ALVKHRHEQLRQHNHNHNSFWLY*IASFRR
Trigger: TCGTCTGAAACTTGCTATCAAATATAACCAGAAGGA...GTTGTGGTTGTGATTGTGCTGACGAAGCTGCTCGTGGCGATGCTTCACAAGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR CCA 72 bp AGTCCTCGTTTGTCAAGAGGCTCATCGCTAGATGTATaGTTCAGGATAACTTCCAGTTCACGAGAATTCCGG +
Preference number: 3 (lower is better)
Translates to: SPRLSRGSSLDV*FRITSSSREFR
Trigger: CCGGAATTCTCGTGAACTGGAAGTTATCCTGAACCATACATCTAGCGATGAGCCTCTTGACAAACGAGGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR CCA 72 bp GACATCTGTCCAAACCAAACCGTGTTCAGGAACTGCTaGCAATTTGACTGGGAGACAAACTCCTTCTGGTTA +
Preference number: 3 (lower is better)
Translates to: DICPNQTVFRNC*QFDWETNSFWL
Trigger: TAACCAGAAGGAGTTTGTCTCCCAGTCAAATTGCCAGCAGTTCCTGAACACGGTTTGGTTTGGACAGATGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR CCA 72 bp TGCCAACTGTCAAAACAGTCATTATCTTCTTACAGGTaGGCTTACGGCGGTAACCTGACATCTGTCCAAACC +
Preference number: 3 (lower is better)
Translates to: CQLSKQSLSSYR*AYGGNLTSVQT
Trigger: GGTTTGGACAGATGTCAGGTTACCGCCGTAAGCCCACCTGTAAGAAGATAATGACTGTTTTGACAGTTGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp ACTGTTTTGACGTTTGACCTTGCCTTTCGAGGTATGCGAGCAAATCCATTTACTGAAGGTGTCATTGCTTaGCTGTTCGCAGAAGATGCC +
Preference number: 3 (lower is better)
Translates to: TVLTFDLAFRGMRANPFTEGVIA*LFAEDA
Trigger: GGCATCTTCTGCGAACAGCAAAGCAATGACACCTTC...AGTAAATGGATTTGCTCGCATACCTCGAAAGGCAAGGTCAAACGTCAAAACAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR TCA 72 bp TGCGACAGCTGGGAAACCTTCAGTCACACCCTCACATaGACACTGAAAGGCAGTCAGATTCTCTTTCTATTT +
Preference number: 3 (lower is better)
Translates to: CDSWETFSHTLT*TLKGSQILFLF
Trigger: AAATAGAAAGAGAATCTGACTGCCTTTCAGTGTTCATGTGAGGGTGTGACTGAAGGTTTCCCAGCTGTCGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR GCA 72 bp CAGGATAACTTCCAGTTCACGAGAATTCCGGGCTTGTaGGAGCAAATCTTTAGCAAACATTTTGCACTGACG +
Preference number: 3 (lower is better)
Translates to: QDNFQFTRIPGL*EQIFSKHFALT
Trigger: CGTCAGTGCAAAATGTTTGCTAAAGATTTGCTCGCACAAGCCCGGAATTCTCGTGAACTGGAAGTTATCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR GCA 72 bp TGCTCGAGCAAACTTCCATTCTTTATCCTCATGATTTaGTATCAGCTGGAAGCTCTTGTGAAGCATCGCCAC +
Preference number: 3 (lower is better)
Translates to: CSSKLPFFILMI*YQLEALVKHRH
Trigger: GTGGCGATGCTTCACAAGAGCTTCCAGCTGATAGCAAATCATGAGGATAAAGAATGGAAGTTTGCTCGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR TCA 72 bp TGTACCCTTTGTCATAGAGCTGAGTCAGTCCAATCGTaGAGGAAAACAGAACAAGGAGGAACATTCCCAGAA +
Preference number: 3 (lower is better)
Translates to: CTLCHRAESVQS*RKTEQGGTFPE
Trigger: TTCTGGGAATGTTCCTCCTTGTTCTGTTTTCCTTCACGATTGGACTGACTCAGCTCTATGACAAAGGGTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR TCA 72 bp GCTGGGAAACCTTCAGTCACACCCTCACATGAACACTaGAAGGCAGTCAGATTCTCTTTCTATTTCAAATGG +
Preference number: 3 (lower is better)
Translates to: AGKPSVTPSHEH*KAVRFSFYFKW
Trigger: CCATTTGAAATAGAAAGAGAATCTGACTGCCTTTCAGTGTTCATGTGAGGGTGTGACTGAAGGTTTCCCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR GCA 72 bp AAACTTGTTGTGAGCCACCACTTTGAGGGCAAAGGTTaGCAAGTAAAGGGAATTCATAACAAAGCTGAGCTG +
Preference number: 3 (lower is better)
Translates to: KLVVSHHFEGKG*QVKGIHNKAEL
Trigger: CAGCTCAGCTTTGTTATGAATTCCCTTTACTTGGCAACCTTTGCCCTCAAAGTGGTGGCTCACAACAAGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR GCA 72 bp CCTGCCTCTGCCTCCTGTATGCTGGCATTAAAGGCGTaGATTACCATGACTGGCTTAAATTCAAATATTTAC +
Preference number: 3 (lower is better)
Translates to: PASASCMLALKA*ITMTGLNSNIY
Trigger: GTAAATATTTGAATTTAAGCCAGTCATGGTAATGCACGCCTTTAATGCCAGCATACAGGAGGCAGAGGCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR-3UTR CAA 90 bp CCACACAGTCCTTCTGCTCTTTGGAAGTGTACCCTTTGTCATAGAGCTGAGTCATCCTTCTGGTTATATTaGATAGCAAGTTTCAGACGA +
Preference number: 3 (lower is better)
Translates to: PHSPSALWKCTLCHRAESSFWLY*IASFRR
Trigger: TCGTCTGAAACTTGCTATCAAATATAACCAGAAGGA...TGACTCAGCTCTATGACAAAGGGTACACTTCCAAAGAGCAGAAGGACTGTGTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp GTCCTTCTGCTCTTTGGAAGTGTACCCTTTGTCATAGAGCTGAGTCAGTCCAATCGACATCCATCGTTGTaGAATATTCTGGATTCTGAA +
Preference number: 3 (lower is better)
Translates to: VLLLFGSVPFVIELSQSNRHPSL*NILDSE
Trigger: TTCAGAATCCAGAATATTCAACAACGATGGATGTCG...ATTGGACTGACTCAGCTCTATGACAAAGGGTACACTTCCAAAGAGCAGAAGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190497.2
3UTR TCA 72 bp TCCAAACCAAACCGTGTTCAGGAACTGCTGGCAATTTaGCTGGGAGACAAACTCCTTCTGGTTATATTTGAT +
Preference number: 3 (lower is better)
Translates to: SKPNRVQELLAI*LGDKLLLVIFD
Trigger: ATCAAATATAACCAGAAGGAGTTTGTCTCCCAGTCAAATTGCCAGCAGTTCCTGAACACGGTTTGGTTTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR CCA 72 bp AACCAAACCGTGTTCAGGAACTGCTGGCAATTTGACTaGGAGACAAACTCCTTCTGGTTATATTTGATAGCA +
Preference number: 3 (lower is better)
Translates to: NQTVFRNCWQFD*ETNSFWLYLIA
Trigger: TGCTATCAAATATAACCAGAAGGAGTTTGTCTCCCAGTCAAATTGCCAGCAGTTCCTGAACACGGTTTGGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp TGCTCGAGCAAACTTCCATTCTTTATCCTCATGATTTGCTATCAGCTGGAAGCTCAAACGCTCTCAGAATaGGATCTTCCTCTGTTAACA +
Preference number: 3 (lower is better)
Translates to: CSSKLPFFILMICYQLEAQTLSE*DLPLLT
Trigger: TGTTAACAGAGGAAGATCCAATTCTGAGAGCGTTTG...AGCTTCCAGCTGATAGCAAATCATGAGGATAAAGAATGGAAGTTTGCTCGAGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp GTCCTTCTGCTCTTTGGAAGTGTACCCTTTGTCATAGAGCTGAGTCAGTCCAATAATGATTCTGCCAAATaGAGATTTGGGAGCTATCAA +
Preference number: 3 (lower is better)
Translates to: VLLLFGSVPFVIELSQSNNDSAK*RFGSYQ
Trigger: TTGATAGCTCCCAAATCTCAATTTGGCAGAATCATT...ATTGGACTGACTCAGCTCTATGACAAAGGGTACACTTCCAAAGAGCAGAAGGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp TGCTCGAGCAAACTTCCATTCTTTATCCTCATGATTTGCTATCAGCTGGAAGCTTTACAATGGTTGGTCTaGATGATCGTTTTGGCCGAT +
Preference number: 3 (lower is better)
Translates to: CSSKLPFFILMICYQLEALQWLV*MIVLAD
Trigger: ATCGGCCAAAACGATCATCAAGACCAACCATTGTAA...AGCTTCCAGCTGATAGCAAATCATGAGGATAAAGAATGGAAGTTTGCTCGAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190497.2
3UTR TCA 72 bp AAAGCCAAGCAAATCCCTTATTTCATTTCGGAATTTTaGCAGATCTTGGCGCAGTTCATTGAGGTTCTCCAC +
Preference number: 3 (lower is better)
Translates to: KAKQIPYFISEF*QILAQFIEVLH
Trigger: GTGGAGAACCTCAATGAACTGCGCCAAGATCTGTCAAAATTCCGAAATGAAATAAGGGATTTGCTTGGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR-3UTR CAA 90 bp TCTTGTAACATCTGTCCCATTGAAATCTGCAGTGGGCCCAAAATAGAGCTGGTTAATGATTCTGCCAAATaGAGATTTGGGAGCTATCAA +
Preference number: 3 (lower is better)
Translates to: SCNICPIEICSGPKIELVNDSAK*RFGSYQ
Trigger: TTGATAGCTCCCAAATCTCAATTTGGCAGAATCATT...AACCAGCTCTATTTTGGGCCCACTGCAGATTTCAATGGGACAGATGTTACAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR TCA 72 bp GAAACTATACTCCTAAGCAATATACTGAACTCTGTGTaGACTCCTAAAACAAGAGATTTAAACACCATGAGC +
Preference number: 3 (lower is better)
Translates to: ETILLSNILNSV*TPKTRDLNTMS
Trigger: GCTCATGGTGTTTAAATCTCTTGTTTTAGGAGTTCACACAGAGTTCAGTATATTGCTTAGGAGTATAGTTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR CCA 72 bp CTGTATGCTGGCATTAAAGGCGTGCATTACCATGACTaGCTTAAATTCAAATATTTACTAGAACTTTTCTCT +
Preference number: 3 (lower is better)
Translates to: LYAGIKGVHYHD*LKFKYLLELFS
Trigger: AGAGAAAAGTTCTAGTAAATATTTGAATTTAAGCCAGTCATGGTAATGCACGCCTTTAATGCCAGCATACAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp TCACAGACCAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAACGCCCGAGAGGTCCGTaGTCGGGTACAGGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: SQTRAVCTLASMPAHIHQRPRGP*SGTGPP
Trigger: TGGCGGCCCTGTACCCGAGCACGGACCTCTCGGGCG...TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp CTACAAGCGTGGGGTGGAATGCATCCCAGTCCTTCCGGTCAGCAAAGTCATGAACGCCCGAGAGGTCCGTaGTCGGGTACAGGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: LQAWGGMHPSPSGQQSHERPRGP*SGTGPP
Trigger: TGGCGGCCCTGTACCCGAGCACGGACCTCTCGGGCG...TTCATGACTTTGCTGACCGGAAGGACTGGGATGCATTCCACCCCACGCTTGTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
CDS-3UTR GCA 90 bp CTTCAGCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGCGGTGGCCTGGTCTGTaGTCTGCATCTTCTGTCGCA +
Preference number: 4 (lower is better)
Translates to: LQLKGKQLSSGLQASPAKRWPGL*SASSVA
Trigger: TGCGACAGAAGATGCAGAGCACAGACCAGGCCACCG...CTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGCTGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp GCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGCCCACACCGTGTTCAGGAACTaGTGGCAATTTGACTGGGAG +
Preference number: 4 (lower is better)
Translates to: AERKAAFLRAPGLSSQAHTVFRN*WQFDWE
Trigger: CTCCCAGTCAAATTGCCAGCAGTTCCTGAACACGGT...GTGGGCTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp GCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGCCCACCCCACACAGTCCTTCTaGTCTTTGGAAGTGTACCCT +
Preference number: 4 (lower is better)
Translates to: AERKAAFLRAPGLSSQAHPTQSF*SLEVYP
Trigger: AGGGTACACTTCCAAAGAGCAGAAGGACTGTGTGGG...GTGGGCTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp GCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGCCCACGATTGCCACCAAAAGTaGATCTGCGGACTGACAACC +
Preference number: 4 (lower is better)
Translates to: AERKAAFLRAPGLSSQAHDCHQK*ICGLTT
Trigger: GGTTGTCAGTCCGCAGATGCACTTTTGGTGGCAATC...GTGGGCTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp TCACAGACCAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAAGCATCTTCTGTCGCATaGACGTCAGGTAGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: SQTRAVCTLASMPAHIHQASSVA*TSGSGA
Trigger: TGCACCGCTACCTGACGTCCATGCGACAGAAGATGC...TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp TCACAGACCAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAATTCTCCACGGTGGCCTaGTCTGTGCTCTGCATCTTC +
Preference number: 4 (lower is better)
Translates to: SQTRAVCTLASMPAHIHQFSTVA*SVLCIF
Trigger: GAAGATGCAGAGCACAGACCAGGCCACCGTGGAGAA...TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR TCA 90 bp TCACAGACCAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAATGTGAGCCACCACTTTaGGGGCAAAGGTTGCCAAGT +
Preference number: 4 (lower is better)
Translates to: SQTRAVCTLASMPAHIHQCEPPL*GQRLPS
Trigger: ACTTGGCAACCTTTGCCCTCAAAGTGGTGGCTCACA...TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp TCACAGACCAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAATCACAGCCAACAGCATaGGGCTTGGGCAAAGACACA +
Preference number: 4 (lower is better)
Translates to: SQTRAVCTLASMPAHIHQSQPTA*GLGKDT
Trigger: TGTGTCTTTGCCCAAGCCCCATGCTGTTGGCTGTGA...TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR TCA 90 bp CAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAAGCGCTCTTGAACTGCTGGCAATTTaGCTGGGAGACAAACTCCTT +
Preference number: 4 (lower is better)
Translates to: QGCLHSGLNAGSHSPSALELLAI*LGDKLL
Trigger: AAGGAGTTTGTCTCCCAGTCAAATTGCCAGCAGTTC...AAGAGCGCTTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp TTTGTCATAGAGCTGAGTCAGTCCAATCGTGAAGGAAAACAGAACAAGGAGGAACGCCCGAGAGGTCCGTaGTCGGGTACAGGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: FVIELSQSNREGKQNKEERPRGP*SGTGPP
Trigger: TGGCGGCCCTGTACCCGAGCACGGACCTCTCGGGCG...TTCCTCCTTGTTCTGTTTTCCTTCACGATTGGACTGACTCAGCTCTATGACAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
CDS-3UTR TCA 90 bp CAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAAGCGCTCTTGAGTCAGTCCAATCGTaGAGGAAAACAGAACAAGGA +
Preference number: 4 (lower is better)
Translates to: QGCLHSGLNAGSHSPSALESVQS*RKTEQG
Trigger: TCCTTGTTCTGTTTTCCTTCACGATTGGACTGACTC...AAGAGCGCTTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp TCACAGACCAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAAAAGGTGTCATTGCTTTaGTGTTCGCAGAAGATGCCC +
Preference number: 4 (lower is better)
Translates to: SQTRAVCTLASMPAHIHQKVSLL*CSQKMP
Trigger: GGGCATCTTCTGCGAACAGCAAAGCAATGACACCTT...TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp GCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGCCCACTTCTCGTCTCTCTTTTaGTTCAAGTTTCTCCACTCC +
Preference number: 4 (lower is better)
Translates to: AERKAAFLRAPGLSSQAHFSSLF*FKFLHS
Trigger: GGAGTGGAGAAACTTGAAGCAAAAGAGAGACGAGAA...GTGGGCTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp TCACAGACCAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAATGCTGGCAATTTGACTaGGAGACAAACTCCTTCTGG +
Preference number: 4 (lower is better)
Translates to: SQTRAVCTLASMPAHIHQCWQFD*ETNSFW
Trigger: CCAGAAGGAGTTTGTCTCCCAGTCAAATTGCCAGCA...TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR CAA 72 bp GCAGGTGCCAATGAACGAGTGGAAGGTGTCATTGCTTaGCTGTTCGCAGAAGATGCCCACACAGTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: AGANERVEGVIA*LFAEDAHTVLL
Trigger: CAGAAGGACTGTGTGGGCATCTTCTGCGAACAGCAAAGCAATGACACCTTCCACTCGTTCATTGGCACCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
CDS-3UTR TCA 90 bp GCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGCCCACTCCTTTAAACTGTTTTaGCGTTTGACCTTGCCTTTC +
Preference number: 4 (lower is better)
Translates to: AERKAAFLRAPGLSSQAHSFKLF*RLTLPF
Trigger: GAAAGGCAAGGTCAAACGTCAAAACAGTTTAAAGGA...GTGGGCTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp CTTCAGCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGTGTCCCATTGAAATCTaGAGTGGGCCCAAAATAGAG +
Preference number: 4 (lower is better)
Translates to: LQLKGKQLSSGLQASPAKCPIEI*SGPKIE
Trigger: CTCTATTTTGGGCCCACTGCAGATTTCAATGGGACA...CTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGCTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp CTTCAGCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGTACTTCAGAGTCGATTaGCACCAAAAGTGCATCTGC +
Preference number: 4 (lower is better)
Translates to: LQLKGKQLSSGLQASPAKYFRVD*HQKCIC
Trigger: GCAGATGCACTTTTGGTGGCAATCGACTCTGAAGTA...CTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGCTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp GCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGCCCACTCATCGCTAGATGTATaGTTCAGGATAACTTCCAGT +
Preference number: 4 (lower is better)
Translates to: AERKAAFLRAPGLSSQAHSSLDV*FRITSS
Trigger: ACTGGAAGTTATCCTGAACCATACATCTAGCGATGA...GTGGGCTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR TCA 90 bp CTTCAGCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGTTCATTTCGGAATTTTaGCAGATCTTGGCGCAGTTC +
Preference number: 4 (lower is better)
Translates to: LQLKGKQLSSGLQASPAKFISEF*QILAQF
Trigger: GAACTGCGCCAAGATCTGTCAAAATTCCGAAATGAA...CTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGCTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp TCACAGACCAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAAAAACTGGCCAGAAGATaGCAACTGTCAAAACAGTCA +
Preference number: 4 (lower is better)
Translates to: SQTRAVCTLASMPAHIHQKLARR*QLSKQS
Trigger: TGACTGTTTTGACAGTTGGCATCTTCTGGCCAGTTT...TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp GCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGCCCACTTTATCCTCATGATTTaGTATCAGCTGGAAGCTCTT +
Preference number: 4 (lower is better)
Translates to: AERKAAFLRAPGLSSQAHFILMI*YQLEAL
Trigger: AAGAGCTTCCAGCTGATAGCAAATCATGAGGATAAA...GTGGGCTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp TCACAGACCAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAATTGCCTTTCGAGGTATaGGAGCAAATCCATTTACTG +
Preference number: 4 (lower is better)
Translates to: SQTRAVCTLASMPAHIHQLPFEV*EQIHLL
Trigger: CAGTAAATGGATTTGCTCGCATACCTCGAAAGGCAA...TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp CAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAAGCGCTCTTTATTCTCTCCAGGGCTaGTCCCATTGTATTTTTCTT +
Preference number: 4 (lower is better)
Translates to: QGCLHSGLNAGSHSPSALYSLQG*SHCIFL
Trigger: AAGAAAAATACAATGGGACCAGCCCTGGAGAGAATA...AAGAGCGCTTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp TCACAGACCAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAAAGTCCTTCTGCTCTTTaGAAGTGTACCCTTTGTCAT +
Preference number: 4 (lower is better)
Translates to: SQTRAVCTLASMPAHIHQSPSAL*KCTLCH
Trigger: ATGACAAAGGGTACACTTCCAAAGAGCAGAAGGACT...TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR CAA 72 bp TCATTTCGGAATTTTGACAGATCTTGGCGCAGTTCATaGAGGTTCTCCACGGTGGCCTGGTCTGTGCTCTGC +
Preference number: 4 (lower is better)
Translates to: SFRNFDRSWRSS*RFSTVAWSVLC
Trigger: GCAGAGCACAGACCAGGCCACCGTGGAGAACCTCAATGAACTGCGCCAAGATCTGTCAAAATTCCGAAATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
CDS-3UTR TCA 90 bp CAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAAGCGCTCTTATGATTCTGCCAAATTaGGATTTGGGAGCTATCAAA +
Preference number: 4 (lower is better)
Translates to: QGCLHSGLNAGSHSPSALMILPN*DLGAIK
Trigger: TTTGATAGCTCCCAAATCTCAATTTGGCAGAATCAT...AAGAGCGCTTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp TCACAGACCAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAATTTGAGGGCAAAGGTTaGCAAGTAAAGGGAATTCAT +
Preference number: 4 (lower is better)
Translates to: SQTRAVCTLASMPAHIHQFEGKG*QVKGIH
Trigger: ATGAATTCCCTTTACTTGGCAACCTTTGCCCTCAAA...TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp GCCTCCTGTATGCTGGCATTAAAGGCGTGCATTACCATGACTGGCTTAAATTCAGCCTGGTCTGTGCTCTaGATCTTCTGTCGCATGGAC +
Preference number: 4 (lower is better)
Translates to: ASCMLALKACITMTGLNSAWSVL*IFCRMD
Trigger: GTCCATGCGACAGAAGATGCAGAGCACAGACCAGGC...TGAATTTAAGCCAGTCATGGTAATGCACGCCTTTAATGCCAGCATACAGGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp GCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGCCCACTGCCAAATTGAGATTTaGGAGCTATCAAATAGCATA +
Preference number: 4 (lower is better)
Translates to: AERKAAFLRAPGLSSQAHCQIEI*ELSNSI
Trigger: TATGCTATTTGATAGCTCCCAAATCTCAATTTGGCA...GTGGGCTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR TCA 90 bp CCAGCATGTGACCACATGAATGGTGACAAGCAGCTTCAACTTTGTAATGGTGAGCCACCTCCACAAGGCTaGGTTCCTTTAAGTCAGCAC +
Preference number: 4 (lower is better)
Translates to: PACDHMNGDKQLQLCNGEPPPQG*VPLSQH
Trigger: GTGCTGACTTAAAGGAACTCAGCCTTGTGGAGGTGG...CTCACCATTACAAAGTTGAAGCTGCTTGTCACCATTCATGTGGTCACATGCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR TCA 90 bp CTTCAGCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGCAGTCTCTTAATGTCTaGCCAAATCATCCCAATAAT +
Preference number: 4 (lower is better)
Translates to: LQLKGKQLSSGLQASPAKQSLNV*PNHPNN
Trigger: ATTATTGGGATGATTTGGTCAGACATTAAGAGACTG...CTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGCTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp GCCTCCTGTATGCTGGCATTAAAGGCGTGCATTACCATGACTGGCTTAAATTCACAACAGCATGGGGCTTaGGCAAAGACACATCCTGCT +
Preference number: 4 (lower is better)
Translates to: ASCMLALKACITMTGLNSQQHGA*AKTHPA
Trigger: AGCAGGATGTGTCTTTGCCCAAGCCCCATGCTGTTG...TGAATTTAAGCCAGTCATGGTAATGCACGCCTTTAATGCCAGCATACAGGAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp CCAGCATGTGACCACATGAATGGTGACAAGCAGCTTCAACTTTGTAATGGTGAGCTTCTGCTACAAGCGTaGGGTGGAATGCATCCCAGT +
Preference number: 4 (lower is better)
Translates to: PACDHMNGDKQLQLCNGELLLQA*GGMHPS
Trigger: ACTGGGATGCATTCCACCCCACGCTTGTAGCAGAAG...CTCACCATTACAAAGTTGAAGCTGCTTGTCACCATTCATGTGGTCACATGCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR TCA 90 bp GCCTCCTGTATGCTGGCATTAAAGGCGTGCATTACCATGACTGGCTTAAATTCACTTACGGCGGTAACCTaGCATCTGTCCAAACCAAAC +
Preference number: 4 (lower is better)
Translates to: ASCMLALKACITMTGLNSLTAVT*HLSKPN
Trigger: GTTTGGTTTGGACAGATGTCAGGTTACCGCCGTAAG...TGAATTTAAGCCAGTCATGGTAATGCACGCCTTTAATGCCAGCATACAGGAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp TCTTGTAACATCTGTCCCATTGAAATCTGCAGTGGGCCCAAAATAGAGCTGGTTGATTGCCACCAAAAGTaGATCTGCGGACCTTGTCGC +
Preference number: 4 (lower is better)
Translates to: SCNICPIEICSGPKIELVDCHQK*ICGPCR
Trigger: GCGACAAGGTCCGCAGATGCACTTTTGGTGGCAATC...AACCAGCTCTATTTTGGGCCCACTGCAGATTTCAATGGGACAGATGTTACAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190497.2
CDS-3UTR GCA 90 bp GCCTCCTGTATGCTGGCATTAAAGGCGTGCATTACCATGACTGGCTTAAATTCAACAAAGATGGCCACGTaGGCTAAGGAGAAGATGTAC +
Preference number: 4 (lower is better)
Translates to: ASCMLALKACITMTGLNSTKMAT*AKEKMY
Trigger: GTACATCTTCTCCTTAGCGCACGTGGCCATCTTTGT...TGAATTTAAGCCAGTCATGGTAATGCACGCCTTTAATGCCAGCATACAGGAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp CCAGCATGTGACCACATGAATGGTGACAAGCAGCTTCAACTTTGTAATGGTGAGTTATCTTCTTACAGGTaGGCTTACGGCGGTAACCTG +
Preference number: 4 (lower is better)
Translates to: PACDHMNGDKQLQLCNGELSSYR*AYGGNL
Trigger: CAGGTTACCGCCGTAAGCCCACCTGTAAGAAGATAA...CTCACCATTACAAAGTTGAAGCTGCTTGTCACCATTCATGTGGTCACATGCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp GCCTCCTGTATGCTGGCATTAAAGGCGTGCATTACCATGACTGGCTTAAATTCAAGTGGAAGGTGTCATTaGTTTGCTGTTCGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: ASCMLALKACITMTGLNSSGRCH*FAVRRR
Trigger: TCTTCTGCGAACAGCAAAGCAATGACACCTTCCACT...TGAATTTAAGCCAGTCATGGTAATGCACGCCTTTAATGCCAGCATACAGGAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp GCCTCCTGTATGCTGGCATTAAAGGCGTGCATTACCATGACTGGCTTAAATTCAAGAATTCCGGGCTTGTaGGAGCAAATCTTTAGCAAA +
Preference number: 4 (lower is better)
Translates to: ASCMLALKACITMTGLNSRIPGL*EQIFSK
Trigger: TTTGCTAAAGATTTGCTCGCACAAGCCCGGAATTCT...TGAATTTAAGCCAGTCATGGTAATGCACGCCTTTAATGCCAGCATACAGGAGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp TTAAACACCATGAGCTCTTCATTTCAAGTGTGTCTTAAGGTAGCTGCATTTGCTGCTGTTCGCAGAAGATaGCCACACAGTCCTTCTGCT +
Preference number: 4 (lower is better)
Translates to: LNTMSSSFQVCLKVAAFAAVRRR*PHSPSA
Trigger: AGCAGAAGGACTGTGTGGGCATCTTCTGCGAACAGC...AGCAAATGCAGCTACCTTAAGACACACTTGAAATGAAGAGCTCATGGTGTTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp GCCTCCTGTATGCTGGCATTAAAGGCGTGCATTACCATGACTGGCTTAAATTCAATAACAAAGCTGAGCTaGTTACGCGATTCTTCTAGG +
Preference number: 4 (lower is better)
Translates to: ASCMLALKACITMTGLNSITKLS*LRDSSR
Trigger: CCTAGAAGAATCGCGTAACCAGCTCAGCTTTGTTAT...TGAATTTAAGCCAGTCATGGTAATGCACGCCTTTAATGCCAGCATACAGGAGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR CAA 72 bp GTTCAGGATAACTTCCAGTTCACGAGAATTCCGGGCTaGTGCGAGCAAATCTTTAGCAAACATTTTGCACTG +
Preference number: 4 (lower is better)
Translates to: VQDNFQFTRIPG*CEQIFSKHFAL
Trigger: CAGTGCAAAATGTTTGCTAAAGATTTGCTCGCACAAGCCCGGAATTCTCGTGAACTGGAAGTTATCCTGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
3UTR CAA 72 bp TTGCTCGAGCAAACTTCCATTCTTTATCCTCATGATTaGCTATCAGCTGGAAGCTCTTGTGAAGCATCGCCA +
Preference number: 4 (lower is better)
Translates to: LLEQTSILYPHD*LSAGSSCEASP
Trigger: TGGCGATGCTTCACAAGAGCTTCCAGCTGATAGCAAATCATGAGGATAAAGAATGGAAGTTTGCTCGAGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
CDS-3UTR TCA 90 bp ATCTGTCCAAACCAAACCGTGTTCAGGAACTGCTGGCAATTTGACTGGGAGACAGACATCCATCGTTGTTaGATATTCTGGATTCTGAAT +
Preference number: 4 (lower is better)
Translates to: ICPNQTVFRNCWQFDWETDIHRC*IFWILN
Trigger: ATTCAGAATCCAGAATATTCAACAACGATGGATGTC...TGTCTCCCAGTCAAATTGCCAGCAGTTCCTGAACACGGTTTGGTTTGGACAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190604.7
CDS-3UTR TCA 90 bp TTAAACACCATGAGCTCTTCATTTCAAGTGTGTCTTAAGGTAGCTGCATTTGCTCAAAGCAGGTGCCAATaGACGAGTGGAAGGTGTCAT +
Preference number: 4 (lower is better)
Translates to: LNTMSSSFQVCLKVAAFAQSRCQ*TSGRCH
Trigger: ATGACACCTTCCACTCGTTCATTGGCACCTGCTTTG...AGCAAATGCAGCTACCTTAAGACACACTTGAAATGAAGAGCTCATGGTGTTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR GCA 90 bp CTTCAGTCACACCCTCACATGAACACTGAAAGGCAGTCAGATTCTCTTTCTATTTTGCAGAACACAGTGTaGATTCACAGCCAACAGCAT +
Preference number: 4 (lower is better)
Translates to: LQSHPHMNTERQSDSLSILQNTV*IHSQQH
Trigger: ATGCTGTTGGCTGTGAATGCACACTGTGTTCTGCAA...AATAGAAAGAGAATCTGACTGCCTTTCAGTGTTCATGTGAGGGTGTGACTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp GCCTCCTGTATGCTGGCATTAAAGGCGTGCATTACCATGACTGGCTTAAATTCAAATTTTGACAGATCTTaGCGCAGTTCATTGAGGTTC +
Preference number: 4 (lower is better)
Translates to: ASCMLALKACITMTGLNSNFDRS*RSSLRF
Trigger: GAACCTCAATGAACTGCGCCAAGATCTGTCAAAATT...TGAATTTAAGCCAGTCATGGTAATGCACGCCTTTAATGCCAGCATACAGGAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR CAA 72 bp CGACTTAAGTTCATTCTTTCTTCTAGTAGTCCTCGTTaGTCAAGAGGCTCATCGCTAGATGTATGGTTCAGG +
Preference number: 4 (lower is better)
Translates to: RLKFILSSSSPR*SRGSSLDVWFR
Trigger: CCTGAACCATACATCTAGCGATGAGCCTCTTGACAAACGAGGACTACTAGAAGAAAGAATGAACTTAAGTCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
CDS-3UTR TCA 90 bp GCCTCCTGTATGCTGGCATTAAAGGCGTGCATTACCATGACTGGCTTAAATTCATATGTTCAAGTCACCTaGACTGTTTTCCTCCAAAAT +
Preference number: 4 (lower is better)
Translates to: ASCMLALKACITMTGLNSYVQVT*TVFLQN
Trigger: ATTTTGGAGGAAAACAGTTCAGGTGACTTGAACATA...TGAATTTAAGCCAGTCATGGTAATGCACGCCTTTAATGCCAGCATACAGGAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR TCA 90 bp CCAGCATGTGACCACATGAATGGTGACAAGCAGCTTCAACTTTGTAATGGTGAGGATCGTTTTGGCCGATaGTTAAGTAGTATATCAACA +
Preference number: 4 (lower is better)
Translates to: PACDHMNGDKQLQLCNGEDRFGR*LSSIST
Trigger: TGTTGATATACTACTTAATCATCGGCCAAAACGATC...CTCACCATTACAAAGTTGAAGCTGCTTGTCACCATTCATGTGGTCACATGCTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp TTAAACACCATGAGCTCTTCATTTCAAGTGTGTCTTAAGGTAGCTGCATTTGCTGTGTTCAGGAACTGCTaGCAATTTGACTGGGAGACA +
Preference number: 4 (lower is better)
Translates to: LNTMSSSFQVCLKVAAFAVFRNC*QFDWET
Trigger: TGTCTCCCAGTCAAATTGCCAGCAGTTCCTGAACAC...AGCAAATGCAGCTACCTTAAGACACACTTGAAATGAAGAGCTCATGGTGTTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR TCA 90 bp CTTCAGTCACACCCTCACATGAACACTGAAAGGCAGTCAGATTCTCTTTCTATTGACATCCATCGTTGTTaGATATTCTGGATTCTGAAT +
Preference number: 4 (lower is better)
Translates to: LQSHPHMNTERQSDSLSIDIHRC*IFWILN
Trigger: ATTCAGAATCCAGAATATTCAACAACGATGGATGTC...AATAGAAAGAGAATCTGACTGCCTTTCAGTGTTCATGTGAGGGTGTGACTGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp TTAAACACCATGAGCTCTTCATTTCAAGTGTGTCTTAAGGTAGCTGCATTTGCTTTATCAGAGCTGGACTaGCCAGACATCTATAGATAT +
Preference number: 4 (lower is better)
Translates to: LNTMSSSFQVCLKVAAFALSELD*PDIYRY
Trigger: ATATCTATAGATGTCTGGCCAGTCCAGCTCTGATAA...AGCAAATGCAGCTACCTTAAGACACACTTGAAATGAAGAGCTCATGGTGTTTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CCA 90 bp TTAAACACCATGAGCTCTTCATTTCAAGTGTGTCTTAAGGTAGCTGCATTTGCTAATAATGTTGAAAGGTaGGGGCAGTGTACATTTGTC +
Preference number: 4 (lower is better)
Translates to: LNTMSSSFQVCLKVAAFANNVER*GQCTFV
Trigger: GACAAATGTACACTGCCCCCACCTTTCAACATTATT...AGCAAATGCAGCTACCTTAAGACACACTTGAAATGAAGAGCTCATGGTGTTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
3UTR CAA 72 bp CAATTTGACTGGGAGACAAACTCCTTCTGGTTATATTaGATAGCAAGTTTCAGACGACTTAAGTTCATTCTT +
Preference number: 4 (lower is better)
Translates to: QFDWETNSFWLY*IASFRRLKFIL
Trigger: AAGAATGAACTTAAGTCGTCTGAAACTTGCTATCAAATATAACCAGAAGGAGTTTGTCTCCCAGTCAAATTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190497.2
ENSMUST00000190604.7
CDS CCA 90 bp TCGCACATCCTTCAGCGCCATCACTTCGTTGGGCGACGAGGAGGATaGGGAGGAAGGCAGGGAGGAGGAGGAGACGCCCGAGAGGTCCGT +
Preference number: 5 (lower is better)
Translates to: SHILQRHHFVGRRGG*GGRQGGGGDAREVR
Trigger: ACGGACCTCTCGGGCGTCTCCTCCTCCTCCCTGCCTTCCTCCCCATCCTCCTCGTCGCCCAACGAAGTGATGGCGCTGAAGGATGTGCGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053785.10
ENSMUST00000189137.7
ENSMUST00000190497.2
ENSMUST00000190604.7
CDS CCA 90 bp TCTCCTCCTTCACCTCTCGCACATCCTTCAGCGCCATCACTTCGTTaGGCGACGAGGAGGATGGGGAGGAAGGCAGGGAGGAGGAGGAGA +
Preference number: 5 (lower is better)
Translates to: SPPSPLAHPSAPSLR*ATRRMGRKAGRRRR
Trigger: TCTCCTCCTCCTCCCTGCCTTCCTCCCCATCCTCCTCGTCGCCCAACGAAGTGATGGCGCTGAAGGATGTGCGAGAGGTGAAGGAGGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053785.10
ENSMUST00000189137.7
ENSMUST00000190497.2
ENSMUST00000190604.7
CDS-3UTR CAA 90 bp GCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGCCCACGGAACTGCTGGCAATTaGACTGGGAGACAAACTCCT +
Preference number: 5 (lower is better)
Translates to: AERKAAFLRAPGLSSQAHGTAGN*TGRQTP
Trigger: AGGAGTTTGTCTCCCAGTCAAATTGCCAGCAGTTCC...GTGGGCTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CAA 90 bp CTTCAGCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGGAAGGTGTCATTGCTTaGCTGTTCGCAGAAGATGCC +
Preference number: 5 (lower is better)
Translates to: LQLKGKQLSSGLQASPAKEGVIA*LFAEDA
Trigger: GGCATCTTCTGCGAACAGCAAAGCAATGACACCTTC...CTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGCTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CAA 90 bp TCACAGACCAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAATCTAGTAGTCCTCGTTaGTCAAGAGGCTCATCGCTA +
Preference number: 5 (lower is better)
Translates to: SQTRAVCTLASMPAHIHQSSSPR*SRGSSL
Trigger: TAGCGATGAGCCTCTTGACAAACGAGGACTACTAGA...TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CAA 90 bp TCACAGACCAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAACTACTTCAGAGTCGATaGCCACCAAAAGTGCATCTG +
Preference number: 5 (lower is better)
Translates to: SQTRAVCTLASMPAHIHQLLQSR*PPKVHL
Trigger: CAGATGCACTTTTGGTGGCAATCGACTCTGAAGTAG...TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CAA 90 bp CCAGCATGTGACCACATGAATGGTGACAAGCAGCTTCAACTTTGTAATGGTGAGCCAACAGCATGGGGCTaGGGCAAAGACACATCCTGC +
Preference number: 5 (lower is better)
Translates to: PACDHMNGDKQLQLCNGEPTAWG*GKDTSC
Trigger: GCAGGATGTGTCTTTGCCCAAGCCCCATGCTGTTGG...CTCACCATTACAAAGTTGAAGCTGCTTGTCACCATTCATGTGGTCACATGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CAA 90 bp CTTCAGCTGAAAGGAAAGCAGCTTTCCTCAGGGCTCCAGGCCTCTCCAGCCAAGCAAACGCTCTCAGAATaGGATCTTCCTCTGTTAACA +
Preference number: 5 (lower is better)
Translates to: LQLKGKQLSSGLQASPAKQTLSE*DLPLLT
Trigger: TGTTAACAGAGGAAGATCCAATTCTGAGAGCGTTTG...CTTGGCTGGAGAGGCCTGGAGCCCTGAGGAAAGCTGCTTTCCTTTCAGCTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CAA 90 bp AGTGTACCCTTTGTCATAGAGCTGAGTCAGTCCAATCGTGAAGGAAAACAGAACGTGCATCTGCGGACCTaGTCGCACGCCAGCAAGAAA +
Preference number: 5 (lower is better)
Translates to: SVPFVIELSQSNREGKQNVHLRT*SHASKK
Trigger: TTTCTTGCTGGCGTGCGACAAGGTCCGCAGATGCAC...GTTCTGTTTTCCTTCACGATTGGACTGACTCAGCTCTATGACAAAGGGTACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190497.2
CDS-3UTR CAA 90 bp TCACAGACCAGGGCTGTCTGCACTCTGGCCTCAATGCCGGCTCACATTCACCAAAATGATTCTGCCAAATaGAGATTTGGGAGCTATCAA +
Preference number: 5 (lower is better)
Translates to: SQTRAVCTLASMPAHIHQNDSAK*RFGSYQ
Trigger: TTGATAGCTCCCAAATCTCAATTTGGCAGAATCATT...TTGGTGAATGTGAGCCGGCATTGAGGCCAGAGTGCAGACAGCCCTGGTCTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CAA 90 bp GCCTCCTGTATGCTGGCATTAAAGGCGTGCATTACCATGACTGGCTTAAATTCAACGAGAATTCCGGGCTaGTGCGAGCAAATCTTTAGC +
Preference number: 5 (lower is better)
Translates to: ASCMLALKACITMTGLNSTRIPG*CEQIFS
Trigger: GCTAAAGATTTGCTCGCACAAGCCCGGAATTCTCGT...TGAATTTAAGCCAGTCATGGTAATGCACGCCTTTAATGCCAGCATACAGGAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CAA 90 bp GCCTCCTGTATGCTGGCATTAAAGGCGTGCATTACCATGACTGGCTTAAATTCAGTAACATCTGTCCCATaGAAATCTGCAGTGGGCCCA +
Preference number: 5 (lower is better)
Translates to: ASCMLALKACITMTGLNSVTSVP*KSAVGP
Trigger: TGGGCCCACTGCAGATTTCAATGGGACAGATGTTAC...TGAATTTAAGCCAGTCATGGTAATGCACGCCTTTAATGCCAGCATACAGGAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CAA 90 bp CCAGCATGTGACCACATGAATGGTGACAAGCAGCTTCAACTTTGTAATGGTGAGCAGTCCTTCTGCTCTTaGGAAGTGTACCCTTTGTCA +
Preference number: 5 (lower is better)
Translates to: PACDHMNGDKQLQLCNGEQSFCS*EVYPLS
Trigger: TGACAAAGGGTACACTTCCAAAGAGCAGAAGGACTG...CTCACCATTACAAAGTTGAAGCTGCTTGTCACCATTCATGTGGTCACATGCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CAA 90 bp TCATCGCTAGATGTATGGTTCAGGATAACTTCCAGTTCACGAGAATTCCGGGCTCGACATCCATCGTTGTaGAATATTCTGGATTCTGAA +
Preference number: 5 (lower is better)
Translates to: SSLDVWFRITSSSREFRARHPSL*NILDSE
Trigger: TTCAGAATCCAGAATATTCAACAACGATGGATGTCG...AGCCCGGAATTCTCGTGAACTGGAAGTTATCCTGAACCATACATCTAGCGATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190604.7
CDS-3UTR CAA 90 bp TTAAACACCATGAGCTCTTCATTTCAAGTGTGTCTTAAGGTAGCTGCATTTGCTGAGTGGAAGGTGTCATaGCTTTGCTGTTCGCAGAAG +
Preference number: 5 (lower is better)
Translates to: LNTMSSSFQVCLKVAAFAEWKVS*LCCSQK
Trigger: CTTCTGCGAACAGCAAAGCAATGACACCTTCCACTC...AGCAAATGCAGCTACCTTAAGACACACTTGAAATGAAGAGCTCATGGTGTTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CAA 90 bp CTTCAGTCACACCCTCACATGAACACTGAAAGGCAGTCAGATTCTCTTTCTATTGTTCTCGTCTCTCTTTaGCTTCAAGTTTCTCCACTC +
Preference number: 5 (lower is better)
Translates to: LQSHPHMNTERQSDSLSIVLVSL*LQVSPL
Trigger: GAGTGGAGAAACTTGAAGCAAAAGAGAGACGAGAAC...AATAGAAAGAGAATCTGACTGCCTTTCAGTGTTCATGTGAGGGTGTGACTGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CAA 90 bp GCCTCCTGTATGCTGGCATTAAAGGCGTGCATTACCATGACTGGCTTAAATTCATTTCATTTCGGAATTTaGACAGATCTTGGCGCAGTT +
Preference number: 5 (lower is better)
Translates to: ASCMLALKACITMTGLNSFHFGI*TDLGAV
Trigger: AACTGCGCCAAGATCTGTCAAAATTCCGAAATGAAA...TGAATTTAAGCCAGTCATGGTAATGCACGCCTTTAATGCCAGCATACAGGAGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CAA 90 bp CCAGCATGTGACCACATGAATGGTGACAAGCAGCTTCAACTTTGTAATGGTGAGTCCTTCTGGTTATATTaGATAGCAAGTTTCAGACGA +
Preference number: 5 (lower is better)
Translates to: PACDHMNGDKQLQLCNGESFWLY*IASFRR
Trigger: TCGTCTGAAACTTGCTATCAAATATAACCAGAAGGA...CTCACCATTACAAAGTTGAAGCTGCTTGTCACCATTCATGTGGTCACATGCTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CAA 90 bp TTAAACACCATGAGCTCTTCATTTCAAGTGTGTCTTAAGGTAGCTGCATTTGCTTTACAATGGTTGGTCTaGATGATCGTTTTGGCCGAT +
Preference number: 5 (lower is better)
Translates to: LNTMSSSFQVCLKVAAFALQWLV*MIVLAD
Trigger: ATCGGCCAAAACGATCATCAAGACCAACCATTGTAA...AGCAAATGCAGCTACCTTAAGACACACTTGAAATGAAGAGCTCATGGTGTTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS TCA 90 bp TCCATAAGTTTTACAATGGTTGGTCTTGATGATCGTTTTGGCCGATaGTTAAGTAGTATATCAACAGCTCCCACTACTTCAGAGTCGATT +
Preference number: 5 (lower is better)
Translates to: SISFTMVGLDDRFGR*LSSISTAPTTSESI
Trigger: AATCGACTCTGAAGTAGTGGGAGCTGTTGATATACTACTTAATCATCGGCCAAAACGATCATCAAGACCAACCATTGTAAAACTTATGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS-3UTR CAA 90 bp TTAAACACCATGAGCTCTTCATTTCAAGTGTGTCTTAAGGTAGCTGCATTTGCTCGACATCCATCGTTGTaGAATATTCTGGATTCTGAA +
Preference number: 5 (lower is better)
Translates to: LNTMSSSFQVCLKVAAFARHPSL*NILDSE
Trigger: TTCAGAATCCAGAATATTCAACAACGATGGATGTCG...AGCAAATGCAGCTACCTTAAGACACACTTGAAATGAAGAGCTCATGGTGTTTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS CCA 72 bp CTTCAGCGCCATCACTTCGTTGGGCGACGAGGAGGATaGGGAGGAAGGCAGGGAGGAGGAGGAGACGCCCGA +
Preference number: 6 (lower is better)
Translates to: LQRHHFVGRRGG*GGRQGGGGDAR
Trigger: TCGGGCGTCTCCTCCTCCTCCCTGCCTTCCTCCCCATCCTCCTCGTCGCCCAACGAAGTGATGGCGCTGAAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053785.10
ENSMUST00000189137.7
ENSMUST00000190497.2
ENSMUST00000190604.7
CDS CAA 90 bp TTCTCCTCCTTCACCTCTCGCACATCCTTCAGCGCCATCACTTCGTaGGGCGACGAGGAGGATGGGGAGGAAGGCAGGGAGGAGGAGGAG +
Preference number: 6 (lower is better)
Translates to: FSSFTSRTSFSAITS*GDEEDGEEGREEEE
Trigger: CTCCTCCTCCTCCCTGCCTTCCTCCCCATCCTCCTCGTCGCCCAACGAAGTGATGGCGCTGAAGGATGTGCGAGAGGTGAAGGAGGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053785.10
ENSMUST00000189137.7
ENSMUST00000190497.2
ENSMUST00000190604.7
CDS CAA 72 bp TTCACCTCTCGCACATCCTTCAGCGCCATCACTTCGTaGGGCGACGAGGAGGATGGGGAGGAAGGCAGGGAG +
Preference number: 6 (lower is better)
Translates to: FTSRTSFSAITS*GDEEDGEEGRE
Trigger: CTCCCTGCCTTCCTCCCCATCCTCCTCGTCGCCCAACGAAGTGATGGCGCTGAAGGATGTGCGAGAGGTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053785.10
ENSMUST00000189137.7
ENSMUST00000190497.2
ENSMUST00000190604.7
CDS GCA 72 bp AGCTCCCACTACTTCAGAGTCGATTGCCACCAAAAGTaGATCTGCGGACTGACAACCGTAGTCCAAAAGCAG +
Preference number: 6 (lower is better)
Translates to: SSHYFRVDCHQK*ICGLTTVVQKQ
Trigger: CTGCTTTTGGACTACGGTTGTCAGTCCGCAGATGCACTTTTGGTGGCAATCGACTCTGAAGTAGTGGGAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7
CDS CAA 72 bp GTAGTATATCAACAGCTCCCACTACTTCAGAGTCGATaGCCACCAAAAGTGCATCTGCGGACTGACAACCGT +
Preference number: 6 (lower is better)
Translates to: VVYQQLPLLQSR*PPKVHLRTDNR
Trigger: ACGGTTGTCAGTCCGCAGATGCACTTTTGGTGGCAATCGACTCTGAAGTAGTGGGAGCTGTTGATATACTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189137.7