RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRP53RKA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039725

Ensembl transcript IDs: ENSMUST00000039007.7

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAGGCTCCTGAGCAGGCGGAGGCAGCACTGGGTCCCTCAGCTGGGTaGTGGAAACCACACTGGAGTCCTTTGGAAGAGCAAGTACTCCTA +
Preference number: 1 (lower is better)
Translates to: QAPEQAEAALGPSAG*WKPHWSPLEEQVLL
Trigger: TAGGAGTACTTGCTCTTCCAAAGGACTCCAGTGTGGTTTCCAGCACCCAGCTGAGGGACCCAGTGCTGCCTCCGCCTGCTCAGGAGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
3UTR-3UTR GCA 90 bp GGGTCCCTCAGCTGGGTGCTGGAAACCACACTGGAGTCCTTTGGAAGAGCAAGTCAAGGCTGCCTGCTCTaGATGAGCTCCACAGCCACT +
Preference number: 2 (lower is better)
Translates to: GSLSWVLETTLESFGRASQGCLL*MSSTAT
Trigger: AGTGGCTGTGGAGCTCATGCAGAGCAGGCAGCCTTG...ACTTGCTCTTCCAAAGGACTCCAGTGTGGTTTCCAGCACCCAGCTGAGGGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
3UTR CAA 90 bp TGGTGGTGGCCCAGCACGATCACAGACCACTTAACAACCCATGCTTaGCTGAGGGGTCCAGCCTCGTCTACATCATCCTTCACCGTGAGC +
Preference number: 2 (lower is better)
Translates to: WWWPSTITDHLTTHA*LRGPASSTSSFTVS
Trigger: GCTCACGGTGAAGGATGATGTAGACGAGGCTGGACCCCTCAGCAAAGCATGGGTTGTTAAGTGGTCTGTGATCGTGCTGGGCCACCACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
3UTR-3UTR GCA 90 bp TTGGAAGAGCAAGTACTCCTAGATCCAGGCCACCTCTCCAGCCCCTCAAAAACAGTCTCAGCTCAAGGCTaGCTGCTCTGCATGAGCTCC +
Preference number: 2 (lower is better)
Translates to: LEEQVLLDPGHLSSPSKTVSAQG*LLCMSS
Trigger: GGAGCTCATGCAGAGCAGGCAGCCTTGAGCTGAGAC...TGTTTTTGAGGGGCTGGAGAGGTGGCCTGGATCTAGGAGTACTTGCTCTTCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
3UTR-3UTR TCA 90 bp TTATTTATGCAGATGAGTGCTCTATCTGCATGTAACCCTGCAAGCCGGAAGAGAAACTGCATCCCAAACTaGGTCCCTGCCTTGTCCTTC +
Preference number: 2 (lower is better)
Translates to: LFMQMSALSACNPASRKRNCIPN*VPALSF
Trigger: GAAGGACAAGGCAGGGACTCAGTTTGGGATGCAGTT...TCTCTTCCGGCTTGCAGGGTTACATGCAGATAGAGCACTCATCTGCATAAATAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
3UTR GCA 72 bp CCTGCCTTGTCCTTCCAGGGTGTCTCAGCTCAAGGCTaGCTGCTCTGCATGAGCTCCACAGCCACTGTCTGG +
Preference number: 3 (lower is better)
Translates to: PALSFQGVSAQG*LLCMSSTATVW
Trigger: CCAGACAGTGGCTGTGGAGCTCATGCAGAGCAGGCAGCCTTGAGCTGAGACACCCTGGAAGGACAAGGCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
3UTR GCA 72 bp GAGCAGGCGGAGGCAGCACTGGGTCCCTCAGCTGGGTaGTGGAAACCACACTGGAGTCCTTTGGAAGAGCAA +
Preference number: 3 (lower is better)
Translates to: EQAEAALGPSAG*WKPHWSPLEEQ
Trigger: TTGCTCTTCCAAAGGACTCCAGTGTGGTTTCCAGCACCCAGCTGAGGGACCCAGTGCTGCCTCCGCCTGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
3UTR CCA 72 bp CCTCATGTACATGAAGCCCCTGAGAACAGTGAGCCATaGATGGTGGTGGCCCAGCACGATCACAGACCACTT +
Preference number: 3 (lower is better)
Translates to: PHVHEAPENSEP*MVVAQHDHRPL
Trigger: AAGTGGTCTGTGATCGTGCTGGGCCACCACCATCCATGGCTCACTGTTCTCAGGGGCTTCATGTACATGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
3UTR GCA 72 bp ATCCACACTTGGAACAAGCTCCACGGAGCAGTCCACTaGATCCCAGTCGGAGCCTGTTCTGCTTTCTCAAAG +
Preference number: 3 (lower is better)
Translates to: IHTWNKLHGAVH*IPVGACSAFSK
Trigger: CTTTGAGAAAGCAGAACAGGCTCCGACTGGGATGCAGTGGACTGCTCCGTGGAGCTTGTTCCAAGTGTGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
3UTR CCA 72 bp ATGAAGCCCCTGAGAACAGTGAGCCATGGATGGTGGTaGCCCAGCACGATCACAGACCACTTAACAACCCAT +
Preference number: 3 (lower is better)
Translates to: MKPLRTVSHGWW*PSTITDHLTTH
Trigger: ATGGGTTGTTAAGTGGTCTGTGATCGTGCTGGGCCACCACCATCCATGGCTCACTGTTCTCAGGGGCTTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
3UTR CCA 72 bp TACATGAAGCCCCTGAGAACAGTGAGCCATGGATGGTaGTGGCCCAGCACGATCACAGACCACTTAACAACC +
Preference number: 3 (lower is better)
Translates to: YMKPLRTVSHGW*WPSTITDHLTT
Trigger: GGTTGTTAAGTGGTCTGTGATCGTGCTGGGCCACCACCATCCATGGCTCACTGTTCTCAGGGGCTTCATGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
3UTR CCA 72 bp ATGTACATGAAGCCCCTGAGAACAGTGAGCCATGGATaGTGGTGGCCCAGCACGATCACAGACCACTTAACA +
Preference number: 3 (lower is better)
Translates to: MYMKPLRTVSHG*WWPSTITDHLT
Trigger: TGTTAAGTGGTCTGTGATCGTGCTGGGCCACCACCATCCATGGCTCACTGTTCTCAGGGGCTTCATGTACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
3UTR TCA 72 bp CACCAGAAGTTCAATGTTATCCTCAACTACATAGTTTaGAGCCAGCCCAGGCTACCCACCCAGCTCTGCCTA +
Preference number: 3 (lower is better)
Translates to: HQKFNVILNYIV*SQPRLPTQLCL
Trigger: TAGGCAGAGCTGGGTGGGTAGCCTGGGCTGGCTTCAAACTATGTAGTTGAGGATAACATTGAACTTCTGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
CDS-3UTR GCA 90 bp GAGCCATGGATGGTGGTGGCCCAGCACGATCACAGACCACTTAACAACCCATGCCGCGCCTCGGCGCCCTaGTGCACCAGCTCTAGGCCG +
Preference number: 4 (lower is better)
Translates to: EPWMVVAQHDHRPLNNPCRASAP*CTSSRP
Trigger: CGGCCTAGAGCTGGTGCAGCAGGGCGCCGAGGCGCG...GCATGGGTTGTTAAGTGGTCTGTGATCGTGCTGGGCCACCACCATCCATGGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
CDS-3UTR GCA 90 bp TGCTTTGCTGAGGGGTCCAGCCTCGTCTACATCATCCTTCACCGTGAGCCAGTTAGCACGATGTGCAGCTaGGCCAGGGGCCGCCTCAGG +
Preference number: 4 (lower is better)
Translates to: CFAEGSSLVYIILHREPVSTMCS*ARGRLR
Trigger: CCTGAGGCGGCCCCTGGCGCAGCTGCACATCGTGCT...AACTGGCTCACGGTGAAGGATGATGTAGACGAGGCTGGACCCCTCAGCAAAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
CDS-3UTR GCA 90 bp GGGTCCCTCAGCTGGGTGCTGGAAACCACACTGGAGTCCTTTGGAAGAGCAAGTATTCCGGCCAGAACCTaGCCCATCCTCCTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: GSLSWVLETTLESFGRASIPART*PILLAR
Trigger: CCTGGCCAGGAGGATGGGGCAGGTTCTGGCCGGAAT...ACTTGCTCTTCCAAAGGACTCCAGTGTGGTTTCCAGCACCCAGCTGAGGGACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
CDS-3UTR TCA 90 bp TGCTTTGCTGAGGGGTCCAGCCTCGTCTACATCATCCTTCACCGTGAGCCAGTTTGTGGGGGTGCGTGCTaGGGAAGGCCTTCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: CFAEGSSLVYIILHREPVCGGAC*GRPSPG
Trigger: TCCTGGAGAAGGCCTTCCTCAGCACGCACCCCCACA...AACTGGCTCACGGTGAAGGATGATGTAGACGAGGCTGGACCCCTCAGCAAAGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
CDS-3UTR CCA 90 bp CTGGAACAGCCAGGTCTAGGGCTGGGATGCAGCTCAGTTGGTAGAGTGCTTGACTCTTCAGCACTGGACTaGACTTCTGGGTCGAGGCCC +
Preference number: 4 (lower is better)
Translates to: LEQPGLGLGCSSVGRVLDSSALD*TSGSRP
Trigger: GGGCCTCGACCCAGAAGTCCAGTCCAGTGCTGAAGA...GTCAAGCACTCTACCAACTGAGCTGCATCCCAGCCCTAGACCTGGCTGTTCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
CDS-3UTR TCA 90 bp ACTGCATCCCAAACTGAGTCCCTGCCTTGTCCTTCCAGGGTGTCTCAGCTCAAGATCTTCCGGCAGTCCTaGGACAAAGCTCAGCCCAAA +
Preference number: 4 (lower is better)
Translates to: TASQTESLPCPSRVSQLKIFRQS*DKAQPK
Trigger: TTTGGGCTGAGCTTTGTCTCAGGACTGCCGGAAGAT...CTTGAGCTGAGACACCCTGGAAGGACAAGGCAGGGACTCAGTTTGGGATGCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
3UTR CAA 72 bp CCCAGCACGATCACAGACCACTTAACAACCCATGCTTaGCTGAGGGGTCCAGCCTCGTCTACATCATCCTTC +
Preference number: 4 (lower is better)
Translates to: PSTITDHLTTHA*LRGPASSTSSF
Trigger: GAAGGATGATGTAGACGAGGCTGGACCCCTCAGCAAAGCATGGGTTGTTAAGTGGTCTGTGATCGTGCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
CDS-3UTR TCA 90 bp CATCCCAGTCGGAGCCTGTTCTGCTTTCTCAAAGTGGAGTTTACATCCACTGAATCAGCCCAAAGTCGATaGGCACGATGTGCAGCTGCG +
Preference number: 4 (lower is better)
Translates to: HPSRSLFCFLKVEFTSTESAQSR*ARCAAA
Trigger: CGCAGCTGCACATCGTGCTCATCGACTTTGGGCTGA...TTCAGTGGATGTAAACTCCACTTTGAGAAAGCAGAACAGGCTCCGACTGGGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
CDS GCA 90 bp GCGCGGCCCTGGAAGCGGCCACGGAAGACGCGCGCCTCGGCGCCCTaGTGCACCAGCTCTAGGCCGCTCAGGAAGAGGCGGCTCCGCTCG +
Preference number: 5 (lower is better)
Translates to: ARPWKRPRKTRASAP*CTSSRPLRKRRLRS
Trigger: CGAGCGGAGCCGCCTCTTCCTGAGCGGCCTAGAGCTGGTGCAGCAGGGCGCCGAGGCGCGCGTCTTCCGTGGCCGCTTCCAGGGCCGCGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
CDS TCA 90 bp TCTTCAGAAAGGCTTCAAACACGGTCTCGGTGTGGGGGTGCGTGCTaGGGAAGGCCTTCTCCAGGACATAGAGGTCGACGCCTTTATCTT +
Preference number: 5 (lower is better)
Translates to: SSERLQTRSRCGGAC*GRPSPGHRGRRLYL
Trigger: AAGATAAAGGCGTCGACCTCTATGTCCTGGAGAAGGCCTTCCTCAGCACGCACCCCCACACCGAGACCGTGTTTGAAGCCTTTCTGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
CDS CCA 90 bp TTCGCCCTCTCAGGCGCACCTCATCTAACTTCTTCAGCACTGGACTaGACTTCTGGGTCGAGGCCCCGTAACTCTTCAGAAAGGCTTCAA +
Preference number: 5 (lower is better)
Translates to: FALSGAPHLTSSALD*TSGSRPRNSSERLQ
Trigger: TTGAAGCCTTTCTGAAGAGTTACGGGGCCTCGACCCAGAAGTCCAGTCCAGTGCTGAAGAAGTTAGATGAGGTGCGCCTGAGAGGGCGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
CDS GCA 72 bp TGGAAGCGGCCACGGAAGACGCGCGCCTCGGCGCCCTaGTGCACCAGCTCTAGGCCGCTCAGGAAGAGGCGG +
Preference number: 6 (lower is better)
Translates to: WKRPRKTRASAP*CTSSRPLRKRR
Trigger: CCGCCTCTTCCTGAGCGGCCTAGAGCTGGTGCAGCAGGGCGCCGAGGCGCGCGTCTTCCGTGGCCGCTTCCA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
CDS CAA 72 bp CATGTTGGAGGTGGTGAGGTCCCCGTGAATGAGGTCTaGGTCGTGCATTCCGGCCAGAACCTGCCCCATCCT +
Preference number: 6 (lower is better)
Translates to: HVGGGEVPVNEV*VVHSGQNLPHP
Trigger: AGGATGGGGCAGGTTCTGGCCGGAATGCACGACCAAGACCTCATTCACGGGGACCTCACCACCTCCAACATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7
CDS CAA 72 bp GAGGCACTGGGGGTCCTTTTCAGTCTCCATAGTGGATaGGATATAATCCCGAACAGTCACCGAGTCTTCGAT +
Preference number: 6 (lower is better)
Translates to: EALGVLFSLHSG*DIIPNSHRVFD
Trigger: ATCGAAGACTCGGTGACTGTTCGGGATTATATCCAATCCACTATGGAGACTGAAAAGGACCCCCAGTGCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039007.7