Pregenerated sensors for TRP53I13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044328Ensembl transcript IDs: ENSMUST00000060417.11, ENSMUST00000136101.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AATTTGTATCAGGAAAGCTACAAGGCTACTCTTCCAGGAACCAGGTaGAGCCTCCAGGGCCTCTCGGCCCGCCGCCAGGGGGCGCCCGCG | + |
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Preference number: 1 (lower is better) Translates to: NLYQESYKATLPGTR*SLQGLSARRQGAPA Trigger: CGCGGGCGCCCCCTGGCGGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTAGCCTTGTAGCTTTCCTGATACAAATT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR CCA 90 bp | TCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGCCGCCAGGGGGCGCCGCCAAGAGTGCAAGCTaGAGCTTCAGCCAGGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: SRNQVKPPGPLGPPPGGAAKSAS*SFSQGW Trigger: CCACCCCTGGCTGAAGCTCCAGCTTGCACTCTTGGC...GGCGCCCCCTGGCGGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGA 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR CCA 90 bp | CTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGCCGCCAGGGGGACTATCCGGTGTGGGTaGGAGCAGGGGCCGTCTGCG | + |
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Preference number: 4 (lower is better) Translates to: LFQEPGEASRASRPAARGTIRCG*EQGPSA Trigger: CGCAGACGGCCCCTGCTCCCACCCACACCGGATAGT...CCCCCTGGCGGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR CCA 90 bp | TACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGCCGCCAGGGGGCCACTATCCGGTGTaGGTGGGAGCAGGGGCCGTC | + |
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Preference number: 4 (lower is better) Translates to: YSSRNQVKPPGPLGPPPGGHYPV*VGAGAV Trigger: GACGGCCCCTGCTCCCACCCACACCGGATAGTGGCC...CCCTGGCGGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR GCA 90 bp | GGCTACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGCCGCCAAGGACAAGGGGTTCCTaGCTCCTCCGCCGGCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: GYSSRNQVKPPGPLGPPPRTRGS*LLRRLS Trigger: GCTGAGCCGGCGGAGGAGGCAGGAACCCCTTGTCCT...TGGCGGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTAGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR GCA 90 bp | TCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGCCGCCAGGGGGCGGTGTCCTGGCTGTCTaGCGTGGGCCCCCAATAGAT | + |
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Preference number: 4 (lower is better) Translates to: SSRNQVKPPGPLGPPPGGGVLAV*RGPPID Trigger: ATCTATTGGGGGCCCACGGCAGACAGCCAGGACACC...GCCCCCTGGCGGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR CCA 90 bp | TACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGCCGCCAGGGCCCTCTTCTGGAGGCTaGCATCGTGGGAGTGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: YSSRNQVKPPGPLGPPPGPSSGG*HRGSGP Trigger: GGGCCCACTCCCACGATGCCAGCCTCCAGAAGAGGG...CCCTGGCGGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR CCA 90 bp | AGGCTACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGCCGCCGGTTGCCTTGCCCACTaGGCATCTGAGCCTCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: RLLFQEPGEASRASRPAAGCLAH*ASEPLS Trigger: GGACAGAGGCTCAGATGCCCAGTGGGCAAGGCAACC...GGCGGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTAGCCT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR TCA 90 bp | AGGCTACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGCCGCCGACCGGGGCCACAGATaGGGTTCCCAAAGTCAACTG | + |
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Preference number: 4 (lower is better) Translates to: RLLFQEPGEASRASRPAADRGHR*GSQSQL Trigger: CAGTTGACTTTGGGAACCTCATCTGTGGCCCCGGTC...GGCGGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTAGCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR CCA 90 bp | CTACAAGGCTACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGGGAAGGTCAGGGCCATaGCAGCCCAAGCCGCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: LQGYSSRNQVKPPGPLGPGRSGP*QPKPPL Trigger: AAGAGGCGGCTTGGGCTGCCATGGCCCTGACCTTCC...CGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTAGCCTTGTAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR TCA 90 bp | TACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGCCGCCAGGGAAAGTGTGGCCAAGGTaGGCAGGACTAGTAGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: YSSRNQVKPPGPLGPPPGKVWPR*AGLVGR Trigger: CCTTCCTACTAGTCCTGCTCACCTTGGCCACACTTT...CCCTGGCGGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR GCA 90 bp | ACAAGGCTACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGCCCAGGTGGGCCAAGAGTaGAAGCTGGAGCTTCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: TRLLFQEPGEASRASRPAQVGQE*KLELQP Trigger: TGGCTGAAGCTCCAGCTTGCACTCTTGGCCCACCTG...GGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTAGCCTTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR CCA 90 bp | TACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGCCGCCAGGGTTAGCCACATACAGGTaGGCCAAGAGTGCAAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: YSSRNQVKPPGPLGPPPGLATYR*AKSASW Trigger: CCAGCTTGCACTCTTGGCCCACCTGTATGTGGCTAA...CCCTGGCGGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR CCA 90 bp | AAGCTACAAGGCTACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCGCCTCTTCAGTACGTaGAGTGGGCCCTCGGGCTAC | + |
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Preference number: 4 (lower is better) Translates to: KLQGYSSRNQVKPPGPLGRLFST*SGPSGY Trigger: GTAGCCCGAGGGCCCACTCCACGTACTGAAGAGGCG...GCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTAGCCTTGTAGCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR GCA 90 bp | AAGCTACAAGGCTACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCATGCCAGCTCCAGTaGAGTCCCCCATGCTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: KLQGYSSRNQVKPPGPLGPCQLQ*SPPCCQ Trigger: CTGACAGCATGGGGGACTGCACTGGAGCTGGCATGG...GCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTAGCCTTGTAGCTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR CCA 90 bp | AAGCTACAAGGCTACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCAGGCACAACCTCCATaGTTGCCTTGCCCACTGGGC | + |
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Preference number: 4 (lower is better) Translates to: KLQGYSSRNQVKPPGPLGQAQPP*LPCPLG Trigger: GCCCAGTGGGCAAGGCAACCATGGAGGTTGTGCCTG...GCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTAGCCTTGTAGCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR CAA 90 bp | TCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGCCGCCAGGGGGCGCCGCCTGGGGGCGTGGATaGGAGACCAAGGGCAGCCCG | + |
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Preference number: 5 (lower is better) Translates to: SRNQVKPPGPLGPPPGGAAWGRG*ETKGSP Trigger: CGGGCTGCCCTTGGTCTCCAATCCACGCCCCCAGGC...GGCGCCCCCTGGCGGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGA 74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS GCA 90 bp | CTCTTCAGTACGTGGAGTGGGCCCTCGGGCTACCCGGGGAGGCCCTaGGGCCCGAGGAGCTGGGGAAACCTGACCCGGACAGGCACAACC | + |
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Preference number: 5 (lower is better) Translates to: LFSTWSGPSGYPGRP*GPRSWGNLTRTGTT Trigger: GGTTGTGCCTGTCCGGGTCAGGTTTCCCCAGCTCCTCGGGCCGCAGGGCCTCCCCGGGTAGCCCGAGGGCCCACTCCACGTACTGAAGAG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 90 bp | AGTGGGCCCTCGGGCTACCCGGGGAGGCCCTGCGGCCCGAGGAGCTaGGGAAACCTGACCCGGACAGGCACAACCTCCATGGTTGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: SGPSGYPGRPCGPRS*GNLTRTGTTSMVAL Trigger: CAAGGCAACCATGGAGGTTGTGCCTGTCCGGGTCAGGTTTCCCCAGCTCCTCGGGCCGCAGGGCCTCCCCGGGTAGCCCGAGGGCCCACT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS GCA 90 bp | CACCTGTGGAGGCACAGGCCACAGGCCTTCAGGACAAGGGGTTCCTaGCTCCTCCGCCGGCTCAGCCACCACCTCGCGAAGGCTCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: HLWRHRPQAFRTRGS*LLRRLSHHLAKAQE Trigger: CTCCTGAGCCTTCGCGAGGTGGTGGCTGAGCCGGCGGAGGAGGCAGGAACCCCTTGTCCTGAAGGCCTGTGGCCTGTGCCTCCACAGGTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS GCA 90 bp | CAGCCAGTGGGCAACCCAGGCTGGCTCTATCCATGCCAGCTCCAGTaGAGTCCCCCATGCTGTCAGCACCAAGGGCCGGTCCCACGTGAG | + |
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Preference number: 5 (lower is better) Translates to: QPVGNPGWLYPCQLQ*SPPCCQHQGPVPRE Trigger: CTCACGTGGGACCGGCCCTTGGTGCTGACAGCATGGGGGACTGCACTGGAGCTGGCATGGATAGAGCCAGCCTGGGTTGCCCACTGGCTG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060417.11 ENSMUST00000136101.2 |
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| CDS GCA 90 bp | CCGCTGCCTCTTCAGCCAGTGGGCAACCCAGGCTGGCTCTATCCATaGCAGCTCCAGTGCAGTCCCCCATGCTGTCAGCACCAAGGGCCG | + |
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Preference number: 5 (lower is better) Translates to: PLPLQPVGNPGWLYP*QLQCSPPCCQHQGP Trigger: CGGCCCTTGGTGCTGACAGCATGGGGGACTGCACTGGAGCTGGCATGGATAGAGCCAGCCTGGGTTGCCCACTGGCTGAAGAGGCAGCGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060417.11 ENSMUST00000136101.2 |
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| CDS CCA 90 bp | CTGCTTCCGCCGCCGCTGCCTCTTCAGCCAGTGGGCAACCCAGGCTaGCTCTATCCATGCCAGCTCCAGTGCAGTCCCCCATGCTGTCAG | + |
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Preference number: 5 (lower is better) Translates to: LLPPPLPLQPVGNPG*LYPCQLQCSPPCCQ Trigger: CTGACAGCATGGGGGACTGCACTGGAGCTGGCATGGATAGAGCCAGCCTGGGTTGCCCACTGGCTGAAGAGGCAGCGGCGGCGGAAGCAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060417.11 ENSMUST00000136101.2 |
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| CDS TCA 90 bp | CCCGGACAGGCACAACCTCCATGGTTGCCTTGCCCACTGGGCATCTaGGCCTCTGTCCTGGACCTACCATTGCCTCCAGGTCCCCCAGTC | + |
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Preference number: 5 (lower is better) Translates to: PGQAQPPWLPCPLGI*ASVLDLPLPPGPPV Trigger: GACTGGGGGACCTGGAGGCAATGGTAGGTCCAGGACAGAGGCTCAGATGCCCAGTGGGCAAGGCAACCATGGAGGTTGTGCCTGTCCGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 90 bp | TTGGGTCATAGGACCTTGTGCCAGGGGCCGCCGGGTCACCAACCCTaGGAGCCTCCCTCCAGTGCTGTTGGTAATCCCCAATGCATGGGG | + |
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Preference number: 5 (lower is better) Translates to: LGHRTLCQGPPGHQP*EPPSSAVGNPQCMG Trigger: CCCCATGCATTGGGGATTACCAACAGCACTGGAGGGAGGCTCCCAGGGTTGGTGACCCGGCGGCCCCTGGCACAAGGTCCTATGACCCAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136101.2 |
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| CDS-3UTR CAA 90 bp | ACAAGGCTACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGCCACCTCCATGGTTGCCTaGCCCACTGGGCATCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: TRLLFQEPGEASRASRPATSMVA*PTGHLS Trigger: GCTCAGATGCCCAGTGGGCAAGGCAACCATGGAGGT...GGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTAGCCTTGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS GCA 90 bp | AACCCAGGCTGGCTCTATCCATGCCAGCTCCAGTGCAGTCCCCCATaGTGTCAGCACCAAGGGCCGGTCCCACGTGAGACTGAAGTCAGG | + |
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Preference number: 5 (lower is better) Translates to: NPGWLYPCQLQCSPP*CQHQGPVPRETEVR Trigger: CCTGACTTCAGTCTCACGTGGGACCGGCCCTTGGTGCTGACAGCATGGGGGACTGCACTGGAGCTGGCATGGATAGAGCCAGCCTGGGTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060417.11 ENSMUST00000136101.2 |
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| CDS GCA 90 bp | TGCCTTGCCCACTGGGCATCTGAGCCTCTGTCCTGGACCTACCATTaGCTCCAGGTCCCCCAGTCGTTAAGGAGACCGGGGCCACAGATG | + |
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Preference number: 5 (lower is better) Translates to: CLAHWASEPLSWTYH*LQVPQSLRRPGPQM Trigger: CATCTGTGGCCCCGGTCTCCTTAACGACTGGGGGACCTGGAGGCAATGGTAGGTCCAGGACAGAGGCTCAGATGCCCAGTGGGCAAGGCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS GCA 90 bp | AGGCAGCCTCCGTTTCAGGAGAGCAGCCACGGTGTCCTGGCTGTCTaGCGTGGGCCCCCAATAGATACTCTCGCTCCTGCGGAAATTCCG | + |
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Preference number: 5 (lower is better) Translates to: RQPPFQESSHGVLAV*RGPPIDTLAPAEIP Trigger: CGGAATTTCCGCAGGAGCGAGAGTATCTATTGGGGGCCCACGGCAGACAGCCAGGACACCGTGGCTGCTCTCCTGAAACGGAGGCTGCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 90 bp | CACACACTCTTTCTCTGCTTCCGCCGCCGCTGCCTCTTCAGCCAGTaGGCAACCCAGGCTGGCTCTATCCATGCCAGCTCCAGTGCAGTC | + |
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Preference number: 5 (lower is better) Translates to: HTLFLCFRRRCLFSQ*ATQAGSIHASSSAV Trigger: GACTGCACTGGAGCTGGCATGGATAGAGCCAGCCTGGGTTGCCCACTGGCTGAAGAGGCAGCGGCGGCGGAAGCAGAGAAAGAGTGTGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060417.11 ENSMUST00000136101.2 |
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| CDS CCA 90 bp | GCCTCCGTTTCAGGAGAGCAGCCACGGTGTCCTGGCTGTCTGCCGTaGGCCCCCAATAGATACTCTCGCTCCTGCGGAAATTCCGGTGCA | + |
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Preference number: 5 (lower is better) Translates to: ASVSGEQPRCPGCLP*APNRYSRSCGNSGA Trigger: TGCACCGGAATTTCCGCAGGAGCGAGAGTATCTATTGGGGGCCCACGGCAGACAGCCAGGACACCGTGGCTGCTCTCCTGAAACGGAGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 90 bp | AACCCTGGGAGCCTCCCTCCAGTGCTGTTGGTAATCCCCAATGCATaGGGACGCCTCACTCGCAATGTACTGGGGCTCTGCCTGCTCGCC | + |
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Preference number: 5 (lower is better) Translates to: NPGSLPPVLLVIPNA*GRLTRNVLGLCLLA Trigger: GGCGAGCAGGCAGAGCCCCAGTACATTGCGAGTGAGGCGTCCCCATGCATTGGGGATTACCAACAGCACTGGAGGGAGGCTCCCAGGGTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136101.2 |
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| CDS TCA 90 bp | TCCTGCGGAAATTCCGGTGCAGTCGCGTGCAAAGTGTGGCCAAGGTaGGCAGGACTAGTAGGAAGGTCAGGGCCATGGCAGCCCAAGCCG | + |
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Preference number: 5 (lower is better) Translates to: SCGNSGAVACKVWPR*AGLVGRSGPWQPKP Trigger: CGGCTTGGGCTGCCATGGCCCTGACCTTCCTACTAGTCCTGCTCACCTTGGCCACACTTTGCACGCGACTGCACCGGAATTTCCGCAGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS GCA 90 bp | GAGGAGCTGGGGAAACCTGACCCGGACAGGCACAACCTCCATGGTTaGCTTGCCCACTGGGCATCTGAGCCTCTGTCCTGGACCTACCAT | + |
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Preference number: 5 (lower is better) Translates to: EELGKPDPDRHNLHG*LAHWASEPLSWTYH Trigger: ATGGTAGGTCCAGGACAGAGGCTCAGATGCCCAGTGGGCAAGGCAACCATGGAGGTTGTGCCTGTCCGGGTCAGGTTTCCCCAGCTCCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 90 bp | CTCTGTGAAGAGGCCAAGGAAACCCTCAGGCCTGGGGGCGTGGATTaGAGACCAAGGGCAGCCCGGAGACCCCTTCTCTTCACAACACTG | + |
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Preference number: 5 (lower is better) Translates to: LCEEAKETLRPGGVD*RPRAARRPLLFTTL Trigger: CAGTGTTGTGAAGAGAAGGGGTCTCCGGGCTGCCCTTGGTCTCCAATCCACGCCCCCAGGCCTGAGGGTTTCCTTGGCCTCTTCACAGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 90 bp | TCAGGCTCTGTGAAGAGGCCAAGGAAACCCTCAGGCCTGGGGGCGTaGATTGGAGACCAAGGGCAGCCCGGAGACCCCTTCTCTTCACAA | + |
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Preference number: 5 (lower is better) Translates to: SGSVKRPRKPSGLGA*IGDQGQPGDPFSSQ Trigger: TTGTGAAGAGAAGGGGTCTCCGGGCTGCCCTTGGTCTCCAATCCACGCCCCCAGGCCTGAGGGTTTCCTTGGCCTCTTCACAGAGCCTGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 90 bp | AACCTCCATGGTTGCCTTGCCCACTGGGCATCTGAGCCTCTGTCCTaGACCTACCATTGCCTCCAGGTCCCCCAGTCGTTAAGGAGACCG | + |
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Preference number: 5 (lower is better) Translates to: NLHGCLAHWASEPLS*TYHCLQVPQSLRRP Trigger: CGGTCTCCTTAACGACTGGGGGACCTGGAGGCAATGGTAGGTCCAGGACAGAGGCTCAGATGCCCAGTGGGCAAGGCAACCATGGAGGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 90 bp | AAACCTGACCCGGACAGGCACAACCTCCATGGTTGCCTTGCCCACTaGGCATCTGAGCCTCTGTCCTGGACCTACCATTGCCTCCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: KPDPDRHNLHGCLAH*ASEPLSWTYHCLQV Trigger: GACCTGGAGGCAATGGTAGGTCCAGGACAGAGGCTCAGATGCCCAGTGGGCAAGGCAACCATGGAGGTTGTGCCTGTCCGGGTCAGGTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR CAA 90 bp | TACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGCCGCCAGGGGTGGGCCCAAAAAGATaGTCAGAGAGAAACCACACA | + |
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Preference number: 5 (lower is better) Translates to: YSSRNQVKPPGPLGPPPGVGPKR*SERNHT Trigger: TGTGTGGTTTCTCTCTGACAATCTTTTTGGGCCCAC...CCCTGGCGGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS GCA 90 bp | TTGTCAGAGAGAAACCACACACTCTTTCTCTGCTTCCGCCGCCGCTaGCTCTTCAGCCAGTGGGCAACCCAGGCTGGCTCTATCCATGCC | + |
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Preference number: 5 (lower is better) Translates to: LSERNHTLFLCFRRR*LFSQWATQAGSIHA Trigger: GGCATGGATAGAGCCAGCCTGGGTTGCCCACTGGCTGAAGAGGCAGCGGCGGCGGAAGCAGAGAAAGAGTGTGTGGTTTCTCTCTGACAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060417.11 ENSMUST00000136101.2 |
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| CDS-3UTR CAA 90 bp | ACAAGGCTACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGCCCGCCGTGTGTAAGTCACTCTaGGTAACACCTGTGGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: TRLLFQEPGEASRASRPAVCKSL*VTPVEA Trigger: TGCCTCCACAGGTGTTACCAAGAGTGACTTACACAC...GGCGGGCCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTAGCCTTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS-3UTR CAA 90 bp | AAAGCTACAAGGCTACTCTTCCAGGAACCAGGTGAAGCCTCCAGGGCCTCTCGGGCACAACCTCCATGGTaGCCTTGCCCACTGGGCATC | + |
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Preference number: 5 (lower is better) Translates to: KATRLLFQEPGEASRASRAQPPW*PCPLGI Trigger: GATGCCCAGTGGGCAAGGCAACCATGGAGGTTGTGC...CCGAGAGGCCCTGGAGGCTTCACCTGGTTCCTGGAAGAGTAGCCTTGTAGCTTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS GCA 90 bp | GTGGGCCCAAAAAGATTGTCAGAGAGAAACCACACACTCTTTCTCTaGTTCCGCCGCCGCTGCCTCTTCAGCCAGTGGGCAACCCAGGCT | + |
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Preference number: 5 (lower is better) Translates to: VGPKRLSERNHTLFL*FRRRCLFSQWATQA Trigger: AGCCTGGGTTGCCCACTGGCTGAAGAGGCAGCGGCGGCGGAAGCAGAGAAAGAGTGTGTGGTTTCTCTCTGACAATCTTTTTGGGCCCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060417.11 ENSMUST00000136101.2 |
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| CDS GCA 90 bp | GTCGTTAAGGAGACCGGGGCCACAGATGAGGTTCCCAAAGTCAACTaGTGGGCCTTCAGGCTCTGTGAAGAGGCCAAGGAAACCCTCAGG | + |
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Preference number: 5 (lower is better) Translates to: VVKETGATDEVPKVN*WAFRLCEEAKETLR Trigger: CCTGAGGGTTTCCTTGGCCTCTTCACAGAGCCTGAAGGCCCAGCAGTTGACTTTGGGAACCTCATCTGTGGCCCCGGTCTCCTTAACGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 90 bp | GTTAAGGAGACCGGGGCCACAGATGAGGTTCCCAAAGTCAACTGCTaGGCCTTCAGGCTCTGTGAAGAGGCCAAGGAAACCCTCAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: VKETGATDEVPKVNC*AFRLCEEAKETLRP Trigger: AGGCCTGAGGGTTTCCTTGGCCTCTTCACAGAGCCTGAAGGCCCAGCAGTTGACTTTGGGAACCTCATCTGTGGCCCCGGTCTCCTTAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 90 bp | CACACCGTCTCCCACACAGCTTCCCTCTTCTGGAGGCTGGCATCGTaGGAGTGGGCCCAAAAAGATTGTCAGAGAGAAACCACACACTCT | + |
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Preference number: 5 (lower is better) Translates to: HTVSHTASLFWRLAS*EWAQKDCQRETTHS Trigger: AGAGTGTGTGGTTTCTCTCTGACAATCTTTTTGGGCCCACTCCCACGATGCCAGCCTCCAGAAGAGGGAAGCTGTGTGGGAGACGGTGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 72 bp | TCGGGCTACCCGGGGAGGCCCTGCGGCCCGAGGAGCTaGGGAAACCTGACCCGGACAGGCACAACCTCCATG | + |
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Preference number: 6 (lower is better) Translates to: SGYPGRPCGPRS*GNLTRTGTTSM Trigger: CATGGAGGTTGTGCCTGTCCGGGTCAGGTTTCCCCAGCTCCTCGGGCCGCAGGGCCTCCCCGGGTAGCCCGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS GCA 72 bp | AGGCACAGGCCACAGGCCTTCAGGACAAGGGGTTCCTaGCTCCTCCGCCGGCTCAGCCACCACCTCGCGAAG | + |
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Preference number: 6 (lower is better) Translates to: RHRPQAFRTRGS*LLRRLSHHLAK Trigger: CTTCGCGAGGTGGTGGCTGAGCCGGCGGAGGAGGCAGGAACCCCTTGTCCTGAAGGCCTGTGGCCTGTGCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS GCA 72 bp | TGGGCTGGTGGCTCTGGATTGGGTCATAGGACCTTGTaGCAGGGGCCGCCGGGTCACCAACCCTGGGAGCCT | + |
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Preference number: 6 (lower is better) Translates to: WAGGSGLGHRTL*QGPPGHQPWEP Trigger: AGGCTCCCAGGGTTGGTGACCCGGCGGCCCCTGGCACAAGGTCCTATGACCCAATCCAGAGCCACCAGCCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136101.2 |
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| CDS CCA 72 bp | CCGCCGCTGCCTCTTCAGCCAGTGGGCAACCCAGGCTaGCTCTATCCATGCCAGCTCCAGTGCAGTCCCCCA | + |
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Preference number: 6 (lower is better) Translates to: PPLPLQPVGNPG*LYPCQLQCSPP Trigger: TGGGGGACTGCACTGGAGCTGGCATGGATAGAGCCAGCCTGGGTTGCCCACTGGCTGAAGAGGCAGCGGCGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060417.11 ENSMUST00000136101.2 |
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| CDS GCA 72 bp | GGCAACCCAGGCTGGCTCTATCCATGCCAGCTCCAGTaGAGTCCCCCATGCTGTCAGCACCAAGGGCCGGTC | + |
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Preference number: 6 (lower is better) Translates to: GNPGWLYPCQLQ*SPPCCQHQGPV Trigger: GACCGGCCCTTGGTGCTGACAGCATGGGGGACTGCACTGGAGCTGGCATGGATAGAGCCAGCCTGGGTTGCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060417.11 ENSMUST00000136101.2 |
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| CDS CCA 72 bp | GAGGCCAAGGAAACCCTCAGGCCTGGGGGCGTGGATTaGAGACCAAGGGCAGCCCGGAGACCCCTTCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: EAKETLRPGGVD*RPRAARRPLLF Trigger: GAAGAGAAGGGGTCTCCGGGCTGCCCTTGGTCTCCAATCCACGCCCCCAGGCCTGAGGGTTTCCTTGGCCTC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 72 bp | GTGAAGAGGCCAAGGAAACCCTCAGGCCTGGGGGCGTaGATTGGAGACCAAGGGCAGCCCGGAGACCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: VKRPRKPSGLGA*IGDQGQPGDPF Trigger: GAAGGGGTCTCCGGGCTGCCCTTGGTCTCCAATCCACGCCCCCAGGCCTGAGGGTTTCCTTGGCCTCTTCAC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 72 bp | TCCCCAATGCATGGGGACGCCTCACTCGCAATGTACTaGGGCTCTGCCTGCTCGCCCTGGAGCGCGGCTACT | + |
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Preference number: 6 (lower is better) Translates to: SPMHGDASLAMY*GSACSPWSAAT Trigger: AGTAGCCGCGCTCCAGGGCGAGCAGGCAGAGCCCCAGTACATTGCGAGTGAGGCGTCCCCATGCATTGGGGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136101.2 |
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| CDS GCA 72 bp | GAGCGTGGGCTTAGCCACATACAGGTGGGCCAAGAGTaGAAGCTGGAGCTTCAGCCAGGGGTGGGCACAGGG | + |
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Preference number: 6 (lower is better) Translates to: ERGLSHIQVGQE*KLELQPGVGTG Trigger: CCCTGTGCCCACCCCTGGCTGAAGCTCCAGCTTGCACTCTTGGCCCACCTGTATGTGGCTAAGCCCACGCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060417.11 ENSMUST00000136101.2 |
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| CDS GCA 72 bp | CCGTTTCAGGAGAGCAGCCACGGTGTCCTGGCTGTCTaGCGTGGGCCCCCAATAGATACTCTCGCTCCTGCG | + |
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Preference number: 6 (lower is better) Translates to: PFQESSHGVLAV*RGPPIDTLAPA Trigger: CGCAGGAGCGAGAGTATCTATTGGGGGCCCACGGCAGACAGCCAGGACACCGTGGCTGCTCTCCTGAAACGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CAA 72 bp | CGGGTCACCAACCCTGGGAGCCTCCCTCCAGTGCTGTaGGTAATCCCCAATGCATGGGGACGCCTCACTCGC | + |
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Preference number: 6 (lower is better) Translates to: RVTNPGSLPPVL*VIPNAWGRLTR Trigger: GCGAGTGAGGCGTCCCCATGCATTGGGGATTACCAACAGCACTGGAGGGAGGCTCCCAGGGTTGGTGACCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136101.2 |
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| CDS GCA 72 bp | TGGCTCTATCCATGCCAGCTCCAGTGCAGTCCCCCATaGTGTCAGCACCAAGGGCCGGTCCCACGTGAGACT | + |
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Preference number: 6 (lower is better) Translates to: WLYPCQLQCSPP*CQHQGPVPRET Trigger: AGTCTCACGTGGGACCGGCCCTTGGTGCTGACAGCATGGGGGACTGCACTGGAGCTGGCATGGATAGAGCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060417.11 ENSMUST00000136101.2 |
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| CDS GCA 72 bp | CTTCAGCCAGTGGGCAACCCAGGCTGGCTCTATCCATaGCAGCTCCAGTGCAGTCCCCCATGCTGTCAGCAC | + |
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Preference number: 6 (lower is better) Translates to: LQPVGNPGWLYP*QLQCSPPCCQH Trigger: GTGCTGACAGCATGGGGGACTGCACTGGAGCTGGCATGGATAGAGCCAGCCTGGGTTGCCCACTGGCTGAAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060417.11 ENSMUST00000136101.2 |
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| CDS GCA 72 bp | CACTGGGCATCTGAGCCTCTGTCCTGGACCTACCATTaGCTCCAGGTCCCCCAGTCGTTAAGGAGACCGGGG | + |
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Preference number: 6 (lower is better) Translates to: HWASEPLSWTYH*LQVPQSLRRPG Trigger: CCCCGGTCTCCTTAACGACTGGGGGACCTGGAGGCAATGGTAGGTCCAGGACAGAGGCTCAGATGCCCAGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS GCA 72 bp | GGGAAACCTGACCCGGACAGGCACAACCTCCATGGTTaGCTTGCCCACTGGGCATCTGAGCCTCTGTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: GKPDPDRHNLHG*LAHWASEPLSW Trigger: CCAGGACAGAGGCTCAGATGCCCAGTGGGCAAGGCAACCATGGAGGTTGTGCCTGTCCGGGTCAGGTTTCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CAA 90 bp | AGCTGGGGAAACCTGACCCGGACAGGCACAACCTCCATGGTTGCCTaGCCCACTGGGCATCTGAGCCTCTGTCCTGGACCTACCATTGCC | + |
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Preference number: 6 (lower is better) Translates to: SWGNLTRTGTTSMVA*PTGHLSLCPGPTIA Trigger: GGCAATGGTAGGTCCAGGACAGAGGCTCAGATGCCCAGTGGGCAAGGCAACCATGGAGGTTGTGCCTGTCCGGGTCAGGTTTCCCCAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS GCA 72 bp | AGAAACCACACACTCTTTCTCTGCTTCCGCCGCCGCTaGCTCTTCAGCCAGTGGGCAACCCAGGCTGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: RNHTLFLCFRRR*LFSQWATQAGS Trigger: AGAGCCAGCCTGGGTTGCCCACTGGCTGAAGAGGCAGCGGCGGCGGAAGCAGAGAAAGAGTGTGTGGTTTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060417.11 ENSMUST00000136101.2 |
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| CDS CCA 72 bp | GGTTGCCTTGCCCACTGGGCATCTGAGCCTCTGTCCTaGACCTACCATTGCCTCCAGGTCCCCCAGTCGTTA | + |
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Preference number: 6 (lower is better) Translates to: GCLAHWASEPLS*TYHCLQVPQSL Trigger: TAACGACTGGGGGACCTGGAGGCAATGGTAGGTCCAGGACAGAGGCTCAGATGCCCAGTGGGCAAGGCAACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 72 bp | CCGGACAGGCACAACCTCCATGGTTGCCTTGCCCACTaGGCATCTGAGCCTCTGTCCTGGACCTACCATTGC | + |
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Preference number: 6 (lower is better) Translates to: PDRHNLHGCLAH*ASEPLSWTYHC Trigger: GCAATGGTAGGTCCAGGACAGAGGCTCAGATGCCCAGTGGGCAAGGCAACCATGGAGGTTGTGCCTGTCCGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 72 bp | TCAGGAGAGCAGCCACGGTGTCCTGGCTGTCTGCCGTaGGCCCCCAATAGATACTCTCGCTCCTGCGGAAAT | + |
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Preference number: 6 (lower is better) Translates to: SGEQPRCPGCLP*APNRYSRSCGN Trigger: ATTTCCGCAGGAGCGAGAGTATCTATTGGGGGCCCACGGCAGACAGCCAGGACACCGTGGCTGCTCTCCTGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CAA 72 bp | AACCTGACCCGGACAGGCACAACCTCCATGGTTGCCTaGCCCACTGGGCATCTGAGCCTCTGTCCTGGACCT | + |
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Preference number: 6 (lower is better) Translates to: NLTRTGTTSMVA*PTGHLSLCPGP Trigger: AGGTCCAGGACAGAGGCTCAGATGCCCAGTGGGCAAGGCAACCATGGAGGTTGTGCCTGTCCGGGTCAGGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS GCA 72 bp | TGTCTGCCGTGGGCCCCCAATAGATACTCTCGCTCCTaGGGAAATTCCGGTGCAGTCGCGTGCAAAGTGTGG | + |
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Preference number: 6 (lower is better) Translates to: CLPWAPNRYSRS*GNSGAVACKVW Trigger: CCACACTTTGCACGCGACTGCACCGGAATTTCCGCAGGAGCGAGAGTATCTATTGGGGGCCCACGGCAGACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 72 bp | AGCCTCCCTCCAGTGCTGTTGGTAATCCCCAATGCATaGGGACGCCTCACTCGCAATGTACTGGGGCTCTGC | + |
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Preference number: 6 (lower is better) Translates to: SLPPVLLVIPNA*GRLTRNVLGLC Trigger: GCAGAGCCCCAGTACATTGCGAGTGAGGCGTCCCCATGCATTGGGGATTACCAACAGCACTGGAGGGAGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136101.2 |
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| CDS TCA 72 bp | AATTCCGGTGCAGTCGCGTGCAAAGTGTGGCCAAGGTaGGCAGGACTAGTAGGAAGGTCAGGGCCATGGCAG | + |
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Preference number: 6 (lower is better) Translates to: NSGAVACKVWPR*AGLVGRSGPWQ Trigger: CTGCCATGGCCCTGACCTTCCTACTAGTCCTGCTCACCTTGGCCACACTTTGCACGCGACTGCACCGGAATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 72 bp | CCTGTACACACCGTCTCCCACACAGCTTCCCTCTTCTaGAGGCTGGCATCGTGGGAGTGGGCCCAAAAAGAT | + |
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Preference number: 6 (lower is better) Translates to: PVHTVSHTASLF*RLASWEWAQKD Trigger: ATCTTTTTGGGCCCACTCCCACGATGCCAGCCTCCAGAAGAGGGAAGCTGTGTGGGAGACGGTGTGTACAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CCA 72 bp | ACCGGGGCCACAGATGAGGTTCCCAAAGTCAACTGCTaGGCCTTCAGGCTCTGTGAAGAGGCCAAGGAAACC | + |
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Preference number: 6 (lower is better) Translates to: TGATDEVPKVNC*AFRLCEEAKET Trigger: GGTTTCCTTGGCCTCTTCACAGAGCCTGAAGGCCCAGCAGTTGACTTTGGGAACCTCATCTGTGGCCCCGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS CAA 90 bp | TTCCCTCTTCTGGAGGCTGGCATCGTGGGAGTGGGCCCAAAAAGATaGTCAGAGAGAAACCACACACTCTTTCTCTGCTTCCGCCGCCGC | + |
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Preference number: 6 (lower is better) Translates to: FPLLEAGIVGVGPKR*SERNHTLFLCFRRR Trigger: GCGGCGGCGGAAGCAGAGAAAGAGTGTGTGGTTTCTCTCTGACAATCTTTTTGGGCCCACTCCCACGATGCCAGCCTCCAGAAGAGGGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060417.11 ENSMUST00000136101.2 |
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| CDS CCA 72 bp | TCCCACACAGCTTCCCTCTTCTGGAGGCTGGCATCGTaGGAGTGGGCCCAAAAAGATTGTCAGAGAGAAACC | + |
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Preference number: 6 (lower is better) Translates to: SHTASLFWRLAS*EWAQKDCQRET Trigger: GGTTTCTCTCTGACAATCTTTTTGGGCCCACTCCCACGATGCCAGCCTCCAGAAGAGGGAAGCTGTGTGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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| CDS GCA 72 bp | AAAAGATTGTCAGAGAGAAACCACACACTCTTTCTCTaGTTCCGCCGCCGCTGCCTCTTCAGCCAGTGGGCA | + |
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Preference number: 6 (lower is better) Translates to: KRLSERNHTLFL*FRRRCLFSQWA Trigger: TGCCCACTGGCTGAAGAGGCAGCGGCGGCGGAAGCAGAGAAAGAGTGTGTGGTTTCTCTCTGACAATCTTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060417.11 ENSMUST00000136101.2 |
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| CDS CCA 72 bp | ACAGCTTCCCTCTTCTGGAGGCTGGCATCGTGGGAGTaGGCCCAAAAAGATTGTCAGAGAGAAACCACACAC | + |
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Preference number: 6 (lower is better) Translates to: TASLFWRLASWE*AQKDCQRETTH Trigger: GTGTGTGGTTTCTCTCTGACAATCTTTTTGGGCCCACTCCCACGATGCCAGCCTCCAGAAGAGGGAAGCTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060417.11 |
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