RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRP53BP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026510

Ensembl transcript IDs: ENSMUST00000117245.2, ENSMUST00000191626.2

Found 258 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATaGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGAACAGTGCC +
Preference number: 1 (lower is better)
Translates to: PKACWCSGAVGDGAR*HRSFLAGQRNGNSA
Trigger: GGCACTGTTCCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR GCA 90 bp AGCATTCTGCCAGCCAGGGTGGTGCGGGCTCAGCAGCAATGCCTCTaGTCACGCCGAGTCCTTCGGTCCTTCATTTTCTTCCACGGCACA +
Preference number: 1 (lower is better)
Translates to: SILPARVVRAQQQCL*SRRVLRSFIFFHGT
Trigger: TGTGCCGTGGAAGAAAATGAAGGACCGAAGGACTCGGCGTGAGCAGAGGCATTGCTGCTGAGCCCGCACCACCCTGGCTGGCAGAATGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR GCA 90 bp GCCATGAGCATTCTGCCAGCCAGGGTGGTGCGGGCTCAGCAGCAATaGCTCTGCTCACGCCGAGTCCTTCGGTCCTTCATTTTCTTCCAC +
Preference number: 1 (lower is better)
Translates to: AMSILPARVVRAQQQ*LCSRRVLRSFIFFH
Trigger: GTGGAAGAAAATGAAGGACCGAAGGACTCGGCGTGAGCAGAGGCATTGCTGCTGAGCCCGCACCACCCTGGCTGGCAGAATGCTCATGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR CCA 90 bp GCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTaGCAGGTCAGCGGAATGGGAACAGTGCCAAAATCACCCTACACA +
Preference number: 1 (lower is better)
Translates to: AQGQLEMVPDGTGPF*QVSGMGTVPKSPYT
Trigger: TGTGTAGGGTGATTTTGGCACTGTTCCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR CCA 90 bp TTTCCCACAGTCCAGCAAATGGTCCCATTTCTTGACAAAGCCAGATaGCTGCCTCCTATGCTGCGCCGCCATGAGCATTCTGCCAGCCAG +
Preference number: 1 (lower is better)
Translates to: FPTVQQMVPFLDKAR*LPPMLRRHEHSASQ
Trigger: CTGGCTGGCAGAATGCTCATGGCGGCGCAGCATAGGAGGCAGCCATCTGGCTTTGTCAAGAAATGGGACCATTTGCTGGACTGTGGGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR CCA 90 bp AGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATaGGAACAGTGCCAAAATCACCCTACACAGGACAAGAAACTGATT +
Preference number: 1 (lower is better)
Translates to: RWCQMAQVLSGRSAE*EQCQNHPTQDKKLI
Trigger: AATCAGTTTCTTGTCCTGTGTAGGGTGATTTTGGCACTGTTCCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR-3UTR TCA 90 bp GATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACTATGCTGCGCCGCCATaGGCATTCTGCCAGCCAGGG +
Preference number: 2 (lower is better)
Translates to: DPKACWCSGAVGDGARWHYAAPP*AFCQPG
Trigger: CCCTGGCTGGCAGAATGCTCATGGCGGCGCAGCATA...GTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR-3UTR GCA 90 bp CAGTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGTGCCAGCCAGGGTGGTaGGGGCTCAGCAGCAATGCC +
Preference number: 2 (lower is better)
Translates to: QLEMVPDGTGPFWQVSGMCQPGW*GLSSNA
Trigger: GGCATTGCTGCTGAGCCCGCACCACCCTGGCTGGCA...CATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR-3UTR GCA 90 bp GTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGGGCTGCCTCCTATGCTaGGCCGCCATGAGCATTCTG +
Preference number: 2 (lower is better)
Translates to: VGDGARWHRSFLAGQRNGGCLLC*AAMSIL
Trigger: CAGAATGCTCATGGCGGCGCAGCATAGGAGGCAGCC...CCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR-3UTR GCA 90 bp CCCACAGTCCAGCAAATGGTCCCATTTCTTGACAAAGCCAGATGGCTGCCTCCTCAGCAGCAATGCCTCTaGTCACGCCGAGTCCTTCGG +
Preference number: 2 (lower is better)
Translates to: PTVQQMVPFLDKARWLPPQQQCL*SRRVLR
Trigger: CCGAAGGACTCGGCGTGAGCAGAGGCATTGCTGCTG...AGGAGGCAGCCATCTGGCTTTGTCAAGAAATGGGACCATTTGCTGGACTGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR-3UTR GCA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCGCGGAATGGGAACAGTaGCAAAATCACCCTACACAG +
Preference number: 2 (lower is better)
Translates to: KACWCSGAVGDGARWHRSAEWEQ*QNHPTQ
Trigger: CTGTGTAGGGTGATTTTGGCACTGTTCCCATTCCGC...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR CAA 90 bp GCCGAGTCCTTCGGTCCTTCATTTTCTTCCACGGCACATTCTTCATaGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGATTTTT +
Preference number: 2 (lower is better)
Translates to: AESFGPSFSSTAHSS*LLSYTVIKVSLLIF
Trigger: AAAAATCAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGTGGAAGAAAATGAAGGACCGAAGGACTCGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR CCA 72 bp AAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTaGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGG +
Preference number: 3 (lower is better)
Translates to: KCTAPAGDPKAC*CSGAVGDGARW
Trigger: CCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR GCA 72 bp ATTCTGCCAGCCAGGGTGGTGCGGGCTCAGCAGCAATaGCTCTGCTCACGCCGAGTCCTTCGGTCCTTCATT +
Preference number: 3 (lower is better)
Translates to: ILPARVVRAQQQ*LCSRRVLRSFI
Trigger: AATGAAGGACCGAAGGACTCGGCGTGAGCAGAGGCATTGCTGCTGAGCCCGCACCACCCTGGCTGGCAGAAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR CCA 72 bp TGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATaGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGG +
Preference number: 3 (lower is better)
Translates to: CWCSGAVGDGAR*HRSFLAGQRNG
Trigger: CCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR GCA 72 bp TCCCATTTCTTGACAAAGCCAGATGGCTGCCTCCTATaGTGCGCCGCCATGAGCATTCTGCCAGCCAGGGTG +
Preference number: 3 (lower is better)
Translates to: SHFLTKPDGCLL*CAAMSILPARV
Trigger: CACCCTGGCTGGCAGAATGCTCATGGCGGCGCAGCATAGGAGGCAGCCATCTGGCTTTGTCAAGAAATGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR CCA 72 bp GTCCAGCAAATGGTCCCATTTCTTGACAAAGCCAGATaGCTGCCTCCTATGCTGCGCCGCCATGAGCATTCT +
Preference number: 3 (lower is better)
Translates to: VQQMVPFLDKAR*LPPMLRRHEHS
Trigger: AGAATGCTCATGGCGGCGCAGCATAGGAGGCAGCCATCTGGCTTTGTCAAGAAATGGGACCATTTGCTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR CCA 72 bp CAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATaGGAACAGTGCCAAAATCACCCTACACAGGACAAG +
Preference number: 3 (lower is better)
Translates to: QMAQVLSGRSAE*EQCQNHPTQDK
Trigger: CTTGTCCTGTGTAGGGTGATTTTGGCACTGTTCCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR-3UTR CAA 90 bp GTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGACGGCACATTCTTCATaGCTTCTGAGCTATACTGTC +
Preference number: 3 (lower is better)
Translates to: VGDGARWHRSFLAGQRNGTAHSS*LLSYTV
Trigger: GACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT...CCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR-3UTR CAA 90 bp CAGTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGAAATGGTCCCATTTCTaGACAAAGCCAGATGGCTGC +
Preference number: 3 (lower is better)
Translates to: QLEMVPDGTGPFWQVSGMKWSHF*TKPDGC
Trigger: GCAGCCATCTGGCTTTGTCAAGAAATGGGACCATTT...CATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR TCA 72 bp AACAGTGCCAAAATCACCCTACACAGGACAAGAAACTaGTTTTCCCACAGTCCAGCAAATGGTCCCATTTCT +
Preference number: 3 (lower is better)
Translates to: NSAKITLHRTRN*FSHSPANGPIS
Trigger: AGAAATGGGACCATTTGCTGGACTGTGGGAAAATCAGTTTCTTGTCCTGTGTAGGGTGATTTTGGCACTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR TCA 72 bp AATGCTACAATAACTCATACAATAGTTACTGCTCACTaGCAAGCAGCTAACAGTTCTTCACTGATAACACAC +
Preference number: 3 (lower is better)
Translates to: NATITHTIVTAH*QAANSSSLITH
Trigger: GTGTGTTATCAGTGAAGAACTGTTAGCTGCTTGTCAGTGAGCAGTAACTATTGTATGAGTTATTGTAGCATT
38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGGCCGACTGGTTGTCGTaGTGGCCATCGATCCTGCCG +
Preference number: 4 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQADWLS*WPSILP
Trigger: CGGCAGGATCGATGGCCACCACGACAACCAGTCGGC...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp GGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCGTGTCCTTGGACGGCTaGGGCGTGAAGGGCCGGACT +
Preference number: 4 (lower is better)
Translates to: GIPKPAGAQGQLEMVPDGVSLDG*GVKGRT
Trigger: AGTCCGGCCCTTCACGCCCCAGCCGTCCAAGGACAC...GCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp CCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTTGCTGGGCCTCGATCTaGTGCTGCTGGCGAGATGCC +
Preference number: 4 (lower is better)
Translates to: PKPAGAQGQLEMVPDGTGCWASI*CCWRDA
Trigger: GGCATCTCGCCAGCAGCAGCAGATCGAGGCCCAGCA...ACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCCCTTGCCTGTGGCCCTaGTGGCTTGAGCTTAGCCCC +
Preference number: 4 (lower is better)
Translates to: KACWCSGAVGDGARWHRSPCLWP*WLELSP
Trigger: GGGGCTAAGCTCAAGCCAGCAGGGCCACAGGCAAGG...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGAGACAGCAGCATCCTTaGCTGTGGCCCTGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQRQQHP*LWPCWL
Trigger: AAGCCAGCAGGGCCACAGGCAAGGATGCTGCTGTCT...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGGACTGGTTGTCGTGGTaGCCATCGATCCTGCCGTTC +
Preference number: 4 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQDWLSW*PSILPF
Trigger: GAACGGCAGGATCGATGGCCACCACGACAACCAGTC...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp CCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTTGCCTGTGGCCCTGCTaGCTTGAGCTTAGCCCCCAC +
Preference number: 4 (lower is better)
Translates to: PKPAGAQGQLEMVPDGTGCLWPC*LELSPH
Trigger: GTGGGGGCTAAGCTCAAGCCAGCAGGGCCACAGGCA...ACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp GATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACGAGACACCTGCCCGGTaGTTTCAGGTGGGCGCATAC +
Preference number: 4 (lower is better)
Translates to: DPKACWCSGAVGDGARWHETPAR*FQVGAY
Trigger: GTATGCGCCCACCTGAAATCACCGGGCAGGTGTCTC...GTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTCAGCATCTCCAGCTaGCTCGTCAGCTCCTCCACT +
Preference number: 4 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQFSISS*LVSSST
Trigger: AGTGGAGGAGCTGACGAGGCAGCTGGAGATGCTGAA...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp GATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACTGGGGGCCTCTGGGTTaGGTCTTGGTCAAGGCACTC +
Preference number: 4 (lower is better)
Translates to: DPKACWCSGAVGDGARWHWGPLG*VLVKAL
Trigger: GAGTGCCTTGACCAAGACGCAACCCAGAGGCCCCCA...GTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCACCATCAGGCAGGGCTaGCTTCACGAGCAGCTCAGG +
Preference number: 4 (lower is better)
Translates to: KACWCSGAVGDGARWHRSTIRQG*LHEQLR
Trigger: CCTGAGCTGCTCGTGAAGCCAGCCCTGCCTGATGGT...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCCACACGACTTGGGGCTaGCACTGCTTGTTGGGGAAG +
Preference number: 4 (lower is better)
Translates to: KACWCSGAVGDGARWHRSHTTWG*HCLLGK
Trigger: CTTCCCCAACAAGCAGTGTCAGCCCCAAGTCGTGTG...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp GATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACCATTGGCCCCTCTGCTaGCTGCATGAGCAAGGAACC +
Preference number: 4 (lower is better)
Translates to: DPKACWCSGAVGDGARWHHWPLC*LHEQGT
Trigger: GGTTCCTTGCTCATGCAGTCAGCAGAGGGGCCAATG...GTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTCCCCATCGTCAACTTaGTCCAGAGCAGTTCCAGCA +
Preference number: 4 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQSPSST*SRAVPA
Trigger: TGCTGGAACTGCTCTGGACCAAGTTGACGATGGGGA...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp GATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACGCCTGCAGAAGGAGCTaGCACGTCACTGTTCTCCGT +
Preference number: 4 (lower is better)
Translates to: DPKACWCSGAVGDGARWHACRRS*HVTVLR
Trigger: ACGGAGAACAGTGACGTGCCAGCTCCTTCTGCAGGC...GTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp CAGTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGTTGGTCCTGACCACCTaGAGGGGCACCAGGAGACAG +
Preference number: 4 (lower is better)
Translates to: QLEMVPDGTGPFWQVSGMLVLTT*RGTRRQ
Trigger: CTGTCTCCTGGTGCCCCTTCAGGTGGTCAGGACCAA...CATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp AGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGAACAGTGGGCCTCGATCTGCTaGTGCTGGCGAGATGCCATC +
Preference number: 4 (lower is better)
Translates to: RWCQMAQVLSGRSAEWEQWASIC*CWRDAI
Trigger: GATGGCATCTCGCCAGCAGCAGCAGATCGAGGCCCA...CTGTTCCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGCCACGAGTTTTCCGTTaGTCAGCCTCTTTTGCTCCA +
Preference number: 4 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQPRVFR*SASFAP
Trigger: TGGAGCAAAAGAGGCTGAGCAACGGAAAACTCGTGG...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp CCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTGGCCCCTCTGCTGACTaGATGAGCAAGGAACCATCA +
Preference number: 4 (lower is better)
Translates to: PKPAGAQGQLEMVPDGTGGPSAD*MSKEPS
Trigger: TGATGGTTCCTTGCTCATGCAGTCAGCAGAGGGGCC...ACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp AGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGAACAGCGTGAAGGGCCGGACTaGAGCAGCAGGAGGACTTTC +
Preference number: 4 (lower is better)
Translates to: RWCQMAQVLSGRSAEWEQREGPD*SSRRTF
Trigger: GAAAGTCCTCCTGCTGCTGCAGTCCGGCCCTTCACG...CTGTTCCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGCATAGCAAACACAGCTaGTCCAGACTCCACCAGGAA +
Preference number: 4 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQHSKHS*SRLHQE
Trigger: TTCCTGGTGGAGTCTGGAGCAGCTGTGTTTGCTATG...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp GATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACGTAAGAGGTCGGCATTaGAAGGGTTCCAATCGGGGC +
Preference number: 4 (lower is better)
Translates to: DPKACWCSGAVGDGARWHVRGRH*KGSNRG
Trigger: GCCCCGATTGGAACCCTTCCAATGCCGACCTCTTAC...GTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGATGTCCTCGCTGCTCTaGTTTTTCCTCAGGGTACCA +
Preference number: 4 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQMSSLL*FFLRVP
Trigger: TGGTACCCTGAGGAAAAACCAGAGCAGCGAGGACAT...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp GGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCCTGAGATGGTCTCCATaGCAGCTATGGTGGTCCTCT +
Preference number: 4 (lower is better)
Translates to: GIPKPAGAQGQLEMVPDGLRWSP*QLWWSS
Trigger: AGAGGACCACCATAGCTGCCATGGAGACCATCTCAG...GCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp GGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCAGAGCCTTTACTTTGTaGAGCAGCCCCAGACCTCAT +
Preference number: 4 (lower is better)
Translates to: GIPKPAGAQGQLEMVPDGRAFTL*SSPRPH
Trigger: ATGAGGTCTGGGGCTGCTTCACAAAGTAAAGGCTCT...GCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp CAGTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGCGGAGCTCTCTGGATTaGCAGTCACTGAGCCTGGTG +
Preference number: 4 (lower is better)
Translates to: QLEMVPDGTGPFWQVSGMRSSLD*QSLSLV
Trigger: CACCAGGCTCAGTGACTGTCAATCCAGAGAGCTCCG...CATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCGCAAAGCAAGGGGGTTaGATTTCACCCTCATCCCGT +
Preference number: 4 (lower is better)
Translates to: KACWCSGAVGDGARWHRSAKQGG*ISPSSR
Trigger: ACGGGATGAGGGTGAAATTCAACCCCCTTGCTTTGC...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp GATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACCAGGAGGCAGCACAATaGAATGGCGTCCATCCATCA +
Preference number: 4 (lower is better)
Translates to: DPKACWCSGAVGDGARWHQEAAQ*NGVHPS
Trigger: TGATGGATGGACGCCATTGCATTGTGCTGCCTCCTG...GTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCCACACTTCGGCTAAATaGCAGTCGTTCTCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: KACWCSGAVGDGARWHRSHTSAK*QSFSPG
Trigger: GCCTGGAGAGAACGACTGCCATTTAGCCGAAGTGTG...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp CCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTGGGTTTTCGAAAGGCTaGAGGGAAGGTGTCCTTGGA +
Preference number: 4 (lower is better)
Translates to: PKPAGAQGQLEMVPDGTGGFSKG*REGVLG
Trigger: TCCAAGGACACCTTCCCTCCAGCCTTTCGAAAACCC...ACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGGTTGCTGGGTGTACATaGAATAGATGGAGCTTGCTG +
Preference number: 4 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQVAGCT*NRWSLL
Trigger: CAGCAAGCTCCATCTATTCCATGTACACCCAGCAAC...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp CCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCTCTGGGTGCTGTTGTaGATTCTGGGCAGCAGCTAT +
Preference number: 4 (lower is better)
Translates to: PKPAGAQGQLEMVPDGTGLWVLL*ILGSSY
Trigger: ATAGCTGCTGCCCAGAATCCACAACAGCACCCAGAG...ACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp AGTTCTTCACTGATAACACACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCCTCCCCAGATGGGTATaGAGGGGGTGGGTATGGGGG +
Preference number: 4 (lower is better)
Translates to: SSSLITHKCTAPAGDPKALPRWV*RGWVWG
Trigger: CCCCCATACCCACCCCCTCCATACCCATCTGGGGAG...GGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGTGTGTTATCAGTGAAGAACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp GGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCGCTCGCCGGGAACTTTaGCACCATTTCTTTTTACAC +
Preference number: 4 (lower is better)
Translates to: GIPKPAGAQGQLEMVPDGARREL*HHFFLH
Trigger: GTGTAAAAAGAAATGGTGTCAAAGTTCCCGGCGAGC...GCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp AGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGAACAGCCGTGGCATAGTGGATaGCTGGATGTAAGGGCCTAC +
Preference number: 4 (lower is better)
Translates to: RWCQMAQVLSGRSAEWEQPWHSG*LDVRAY
Trigger: GTAGGCCCTTACATCCAGTCATCCACTATGCCACGG...CTGTTCCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp CAGTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGCCTCTGCTGACTGCATaGGCAAGGAACCATCAGGCA +
Preference number: 4 (lower is better)
Translates to: QLEMVPDGTGPFWQVSGMPLLTA*ARNHQA
Trigger: TGCCTGATGGTTCCTTGCTCATGCAGTCAGCAGAGG...CATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp AGTTCTTCACTGATAACACACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCGCCTCGATCTGCTGCTaGTGGCGAGATGCCATCTCC +
Preference number: 4 (lower is better)
Translates to: SSSLITHKCTAPAGDPKAASICC*WRDAIS
Trigger: GGAGATGGCATCTCGCCAGCAGCAGCAGATCGAGGC...GGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGTGTGTTATCAGTGAAGAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp CCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCGGCCACCTCTGAATTaGGCTTATTCAAACACTCCC +
Preference number: 4 (lower is better)
Translates to: PKPAGAQGQLEMVPDGTGRPPLN*AYSNTP
Trigger: GGGAGTGTTTGAATAAGCGCAATTCAGAGGTGGCCG...ACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCTTGGTCAAGGCACTCTaGACAGCCTGCTGGAAGTTT +
Preference number: 4 (lower is better)
Translates to: KACWCSGAVGDGARWHRSLVKAL*TACWKF
Trigger: AAACTTCCAGCAGGCTGTGCAGAGTGCCTTGACCAA...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp GATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACTTCCTCGCACTTGTCTaGAGCAGTCTGCATGTCACT +
Preference number: 4 (lower is better)
Translates to: DPKACWCSGAVGDGARWHFLALV*SSLHVT
Trigger: AGTGACATGCAGACTGCTGCAGACAAGTGCGAGGAA...GTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTCTGTTGTTGCAGCTTaGCATTCTGCTCTTGGTTCA +
Preference number: 4 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQSVVAA*HSALGS
Trigger: TGAACCAAGAGCAGAATGCCAAGCTGCAACAACAGA...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp AGTTCTTCACTGATAACACACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCCTCTGGCTCCCCAGATaGGTATGGAGGGGGTGGGTA +
Preference number: 4 (lower is better)
Translates to: SSSLITHKCTAPAGDPKALWLPR*VWRGWV
Trigger: TACCCACCCCCTCCATACCCATCTGGGGAGCCAGAG...GGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGTGTGTTATCAGTGAAGAACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp CCCACAGTCCAGCAAATGGTCCCATTTCTTGACAAAGCCAGATGGCTGCCTCCTCCCGGTGATTTCAGGTaGGCGCATACGTGCGGAGTC +
Preference number: 4 (lower is better)
Translates to: PTVQQMVPFLDKARWLPPPGDFR*AHTCGV
Trigger: GACTCCGCACGTATGCGCCCACCTGAAATCACCGGG...AGGAGGCAGCCATCTGGCTTTGTCAAGAAATGGGACCATTTGCTGGACTGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGAAGATTTCCATCAGGTaGAACCGGGAGATTCTCTTT +
Preference number: 4 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQKISIR*NREILF
Trigger: AAAGAGAATCTCCCGGTTTCACCTGATGGAAATCTT...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCGCTATTGGCAATTGCTaGGCATTTCCATCTGGCTTC +
Preference number: 4 (lower is better)
Translates to: KACWCSGAVGDGARWHRSAIGNC*AFPSGF
Trigger: GAAGCCAGATGGAAATGCTCAGCAATTGCCAATAGC...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCATGGCTCTCATGAACTaGAGAAACGGTCTCTGTCTC +
Preference number: 4 (lower is better)
Translates to: KACWCSGAVGDGARWHRSMALMN*RNGLCL
Trigger: GAGACAGAGACCGTTTCTTCAGTTCATGAGAGCCAT...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp CAGTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGTCTCTCCAGGCTCCTTaGACAGATCCACCACATCTC +
Preference number: 4 (lower is better)
Translates to: QLEMVPDGTGPFWQVSGMSLQAP*TDPPHL
Trigger: GAGATGTGGTGGATCTGTGCAAGGAGCCTGGAGAGA...CATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp GATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGCTCCCTCTGCTTCTaGTGGAACAAGCTATTCATC +
Preference number: 4 (lower is better)
Translates to: DPKACWCSGAVGDGARWHSSLCF*WNKLFI
Trigger: GATGAATAGCTTGTTCCAGCAGAAGCAGAGGGAGCT...GTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGCAGCTATCACAGGCTTaGCATACACACTTGAAAAGT +
Preference number: 4 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQQLSQA*HTHLKS
Trigger: ACTTTTCAAGTGTGTATGGCAAGCCTGTGATAGCTG...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp CCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTACACTTGGACATTGTTaGAGGAGGCAGCACAATGCA +
Preference number: 4 (lower is better)
Translates to: PKPAGAQGQLEMVPDGTGTLGHC*RRQHNA
Trigger: TGCATTGTGCTGCCTCCTGCAACAATGTCCAAGTGT...ACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCAATCTCCTTCTTTCATaGGCAGCTCATCGTCATGCT +
Preference number: 4 (lower is better)
Translates to: KACWCSGAVGDGARWHRSNLLLS*AAHRHA
Trigger: AGCATGACGATGAGCTGCTCATGAAAGAAGGAGATT...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp GTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGGGAACTTCTGTGAAGTaGTGCTCACTGTTACTGAGG +
Preference number: 4 (lower is better)
Translates to: VGDGARWHRSFLAGQRNGGTSVK*CSLLLR
Trigger: CCTCAGTAACAGTGAGCAGCACTTCACAGAAGTTCC...CCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp CAGTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGCACTCCCTCTGTTGTTaGAGCTTGGCATTCTGCTCT +
Preference number: 4 (lower is better)
Translates to: QLEMVPDGTGPFWQVSGMHSLCC*SLAFCS
Trigger: AGAGCAGAATGCCAAGCTGCAACAACAGAGGGAGTG...CATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp GGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCTCTGCATATTGTCTCTaGGGTAACAGGAACTTCTGT +
Preference number: 4 (lower is better)
Translates to: GIPKPAGAQGQLEMVPDGSAYCL*GNRNFC
Trigger: ACAGAAGTTCCTGTTACCCCAGAGACAATATGCAGA...GCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp AGTTCTTCACTGATAACACACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCCAGAAGAGCCTTGGCTaGGTAAGAGGTCGGCATTGG +
Preference number: 4 (lower is better)
Translates to: SSSLITHKCTAPAGDPKAQKSLG*VRGRHW
Trigger: CCAATGCCGACCTCTTACCCAGCCAAGGCTCTTCTG...GGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGTGTGTTATCAGTGAAGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp GTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGCTGAGCATTTCCATCTaGCTTCATGTCAGAAGGCGA +
Preference number: 4 (lower is better)
Translates to: VGDGARWHRSFLAGQRNGLSISI*LHVRRR
Trigger: TCGCCTTCTGACATGAAGCCAGATGGAAATGCTCAG...CCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCTTTTGTTGGGCTGAGTaGTCGAGGAATCCTTTCGTT +
Preference number: 4 (lower is better)
Translates to: KACWCSGAVGDGARWHRSFCWAE*SRNPFV
Trigger: AACGAAAGGATTCCTCGACCACTCAGCCCAACAAAA...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp GATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACCCATGGCAGCTATGGTaGTCCTCTGATACAAAAGTT +
Preference number: 4 (lower is better)
Translates to: DPKACWCSGAVGDGARWHPWQLW*SSDTKV
Trigger: AACTTTTGTATCAGAGGACCACCATAGCTGCCATGG...GTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp CCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTTCTCCATGGCAGCTATaGTGGTCCTCTGATACAAAA +
Preference number: 4 (lower is better)
Translates to: PKPAGAQGQLEMVPDGTGSPWQL*WSSDTK
Trigger: TTTTGTATCAGAGGACCACCATAGCTGCCATGGAGA...ACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp AGTTCTTCACTGATAACACACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCACTCCCCATATCCTCTaGGGACAGTGGTTCAGGGAC +
Preference number: 4 (lower is better)
Translates to: SSSLITHKCTAPAGDPKATPHIL*GQWFRD
Trigger: GTCCCTGAACCACTGTCCCCAGAGGATATGGGGAGT...GGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGTGTGTTATCAGTGAAGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp AGTTCTTCACTGATAACACACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTTCTTCGGACACCTCTaGCTCCCCAGATGGGTATGG +
Preference number: 4 (lower is better)
Translates to: SSSLITHKCTAPAGDPKAFFGHL*LPRWVW
Trigger: CCATACCCATCTGGGGAGCCAGAGGTGTCCGAAGAA...GGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGTGTGTTATCAGTGAAGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp CAGTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGCAGCACAATGCAATaGCGTCCATCCATCACTATC +
Preference number: 4 (lower is better)
Translates to: QLEMVPDGTGPFWQVSGMGSTMQ*RPSITI
Trigger: GATAGTGATGGATGGACGCCATTGCATTGTGCTGCC...CATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp AGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGAACAGGCTGCTCACTGTTACTaGGGTAAACTGTCAGGAACA +
Preference number: 4 (lower is better)
Translates to: RWCQMAQVLSGRSAEWEQAAHCY*GKLSGT
Trigger: TGTTCCTGACAGTTTACCTCAGTAACAGTGAGCAGC...CTGTTCCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp AGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGAACAGCATGACGGCCACCTCTaGATTGCGCTTATTCAAACA +
Preference number: 4 (lower is better)
Translates to: RWCQMAQVLSGRSAEWEQHDGHL*IALIQT
Trigger: TGTTTGAATAAGCGCAATTCAGAGGTGGCCGTCATG...CTGTTCCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGTGGACGGCTGGGGCGTaGAGGGCCGGACTGCAGCAG +
Preference number: 4 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLWTAGA*RAGLQQ
Trigger: CTGCTGCAGTCCGGCCCTTCACGCCCCAGCCGTCCA...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp CCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTAATTTCTGTGTGGCCTaGACACACAGCATTATGAAG +
Preference number: 4 (lower is better)
Translates to: PKPAGAQGQLEMVPDGTGNFCVA*THSIMK
Trigger: CTTCATAATGCTGTGTGTGCAGGCCACACAGAAATT...ACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp GATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACCCATCCATCACTATCTaGTGCATTTACATTCACACC +
Preference number: 4 (lower is better)
Translates to: DPKACWCSGAVGDGARWHPSITI*CIYIHT
Trigger: GGTGTGAATGTAAATGCAGCAGATAGTGATGGATGG...GTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp GTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGTTTACACTTGGATCTTaGGATCTCGGTCCACTCACA +
Preference number: 4 (lower is better)
Translates to: VGDGARWHRSFLAGQRNGFTLGS*DLGPLT
Trigger: TGTGAGTGGACCGAGATCCCAAGATCCAAGTGTAAA...CCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGCATTCTGCTCTTaGTTCAGTTTGTTTCTTAAC +
Preference number: 4 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQLAFCS*FSLFLN
Trigger: GTTAAGAAACAAACTGAACCAAGAGCAGAATGCCAA...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp CAGTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGCTGACACTGCTTGTTaGGGAAGATTTCCATCAGGT +
Preference number: 4 (lower is better)
Translates to: QLEMVPDGTGPFWQVSGMADTAC*GRFPSG
Trigger: ACCTGATGGAAATCTTCCCCAACAAGCAGTGTCAGC...CATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp AGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGAACAGCCCCAGACCTCATATTaGGCAGTGTCTGTATCTTCA +
Preference number: 4 (lower is better)
Translates to: RWCQMAQVLSGRSAEWEQPQTSY*AVSVSS
Trigger: TGAAGATACAGACACTGCCCAATATGAGGTCTGGGG...CTGTTCCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp CCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTAAGTTTCTGAATATTTaGCCCATTAGGGCCTTCTGG +
Preference number: 4 (lower is better)
Translates to: PKPAGAQGQLEMVPDGTGKFLNI*PIRAFW
Trigger: CCAGAAGGCCCTAATGGGCCAAATATTCAGAAACTT...ACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp CCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTTTCACAATTTCTGTGTaGCCTGCACACACAGCATTA +
Preference number: 4 (lower is better)
Translates to: PKPAGAQGQLEMVPDGTGFTISV*PAHTAL
Trigger: TAATGCTGTGTGTGCAGGCCACACAGAAATTGTGAA...ACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp GTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGTTTTCATGGCTCTCATaGACTGAAGAAACGGTCTCT +
Preference number: 4 (lower is better)
Translates to: VGDGARWHRSFLAGQRNGFSWLS*TEETVS
Trigger: AGAGACCGTTTCTTCAGTTCATGAGAGCCATGAAAA...CCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR TCA 90 bp CCCACAGTCCAGCAAATGGTCCCATTTCTTGACAAAGCCAGATGGCTGCCTCCTTGGTACTGCTGTCTGTaGCTCCCTCAGACACATACT +
Preference number: 4 (lower is better)
Translates to: PTVQQMVPFLDKARWLPPWYCCL*LPQTHT
Trigger: AGTATGTGTCTGAGGGAGTCACAGACAGCAGTACCA...AGGAGGCAGCCATCTGGCTTTGTCAAGAAATGGGACCATTTGCTGGACTGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp CCCACAGTCCAGCAAATGGTCCCATTTCTTGACAAAGCCAGATGGCTGCCTCCTGCAAGTTTGTCCTTTTaGCAGGAGGCAGAGACACCT +
Preference number: 4 (lower is better)
Translates to: PTVQQMVPFLDKARWLPPASLSF*QEAETP
Trigger: AGGTGTCTCTGCCTCCTGGCAAAAGGACAAACTTGC...AGGAGGCAGCCATCTGGCTTTGTCAAGAAATGGGACCATTTGCTGGACTGTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp GTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGCTCGTAATCCCACAGTaGATAAATGACGCCTTTGTT +
Preference number: 4 (lower is better)
Translates to: VGDGARWHRSFLAGQRNGLVIPQ*INDAFV
Trigger: AACAAAGGCGTCATTTATGCACTGTGGGATTACGAG...CCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCAAAAACTTTAAGCGTTaGTCCTTAGTAGCCAGCATT +
Preference number: 4 (lower is better)
Translates to: KACWCSGAVGDGARWHRSKNFKR*SLVASI
Trigger: AATGCTGGCTACTAAGGAGCAACGCTTAAAGTTTTT...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp AGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGAACAGTGCAGCTTGGCATTCTaGTCTTGGTTCAGTTTGTTT +
Preference number: 4 (lower is better)
Translates to: RWCQMAQVLSGRSAEWEQCSLAF*SWFSLF
Trigger: AAACAAACTGAACCAAGAGCAGAATGCCAAGCTGCA...CTGTTCCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp AGTTCTTCACTGATAACACACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCCGCCTTTGTTCATTATaGCCATCTTCTCCTGAACGC +
Preference number: 4 (lower is better)
Translates to: SSSLITHKCTAPAGDPKARLCSL*PSSPER
Trigger: GCGTTCAGGAGAAGATGGGCATAATGAACAAAGGCG...GGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGTGTGTTATCAGTGAAGAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp AGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGAACAGATAGTCCTAGCAAGTTaGGTGGAACATATCCTTCCT +
Preference number: 4 (lower is better)
Translates to: RWCQMAQVLSGRSAEWEQIVLAS*VEHILP
Trigger: AGGAAGGATATGTTCCACGCAACTTGCTAGGACTAT...CTGTTCCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp CCCACAGTCCAGCAAATGGTCCCATTTCTTGACAAAGCCAGATGGCTGCCTCCTTTCTTGCTTAGATGCTaGAGACAGGACTTGGTCCTG +
Preference number: 4 (lower is better)
Translates to: PTVQQMVPFLDKARWLPPFLLRC*RQDLVL
Trigger: CAGGACCAAGTCCTGTCTCCAGCATCTAAGCAAGAA...AGGAGGCAGCCATCTGGCTTTGTCAAGAAATGGGACCATTTGCTGGACTGTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp AGTTCTTCACTGATAACACACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCAACAAGCTATTCATCTaGTCGATCTCCTCCACGAGT +
Preference number: 4 (lower is better)
Translates to: SSSLITHKCTAPAGDPKANKLFI*SISSTS
Trigger: ACTCGTGGAGGAGATCGAGCAGATGAATAGCTTGTT...GGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGTGTGTTATCAGTGAAGAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp AGTTCTTCACTGATAACACACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCCCACTGTGTCAAACATaGAAAAGGGACGCACTTTCT +
Preference number: 4 (lower is better)
Translates to: SSSLITHKCTAPAGDPKAPLCQT*KRDALS
Trigger: AGAAAGTGCGTCCCTTTTCCATGTTTGACACAGTGG...GGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGTGTGTTATCAGTGAAGAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp CAGTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGTGTAGGAACGGGAGGTaGTACTTTAGCTACATTTTT +
Preference number: 4 (lower is better)
Translates to: QLEMVPDGTGPFWQVSGMCRNGR*YFSYIF
Trigger: AAAAATGTAGCTAAAGTACCACCTCCCGTTCCTACA...CATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAACTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp AGTTCTTCACTGATAACACACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTCCATCACTATCTGCTaGATTTACATTCACACCGAA +
Preference number: 4 (lower is better)
Translates to: SSSLITHKCTAPAGDPKASITIC*IYIHTE
Trigger: TTCGGTGTGAATGTAAATGCAGCAGATAGTGATGGA...GGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGTGTGTTATCAGTGAAGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGTCGATCTGCTGCTGCTaGCGAGATGCCATCTCCTGG +
Preference number: 4 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLSICCC*RDAISW
Trigger: CCAGGAGATGGCATCTCGCCAGCAGCAGCAGATCGA...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGGTGAGGGGACTGAGATaGTCTCCATGGCAGCTATGG +
Preference number: 4 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLVRGLR*SPWQLW
Trigger: CCATAGCTGCCATGGAGACCATCTCAGTCCCCTCAC...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGCTTGCTGCCACAGTCTaGGGTTTTCGAAAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLLAATV*GFRKAG
Trigger: TCCAGCCTTTCGAAAACCCCAGACTGTGGCAGCAAG...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGTACACACTTGAAAAGTaGGGGCCTCTGGGTTGCGTC +
Preference number: 4 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLYTLEK*GPLGCV
Trigger: GACGCAACCCAGAGGCCCCCACTTTTCAAGTGTGTA...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGGCAGGAGGACTTTCTTaGTTAGATGCTGGAGACAGG +
Preference number: 4 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLAGGLS*LDAGDR
Trigger: CCTGTCTCCAGCATCTAAGCAAGAAAGTCCTCCTGC...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGATAGATGGAGCTTGCTaGCACAGTCTGGGGTTTTCG +
Preference number: 4 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLIDGAC*HSLGFS
Trigger: CGAAAACCCCAGACTGTGGCAGCAAGCTCCATCTAT...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR GCA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGGGAATAGATGGAGCTTaGTGCCACAGTCTGGGGTTT +
Preference number: 4 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLGIDGA*CHSLGF
Trigger: AAACCCCAGACTGTGGCAGCAAGCTCCATCTATTCC...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CCA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGTGTACATGGAATAGATaGAGCTTGCTGCCACAGTCT +
Preference number: 4 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLCTWNR*SLLPQS
Trigger: AGACTGTGGCAGCAAGCTCCATCTATTCCATGTACA...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
3UTR CAA 72 bp TTCGGTCCTTCATTTTCTTCCACGGCACATTCTTCATaGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTT +
Preference number: 4 (lower is better)
Translates to: FGPSFSSTAHSS*LLSYTVIKVSL
Trigger: AAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGTGGAAGAAAATGAAGGACCGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 90 bp GTCTGGGGTTTTCGAAAGGCTGGAGGGAAGGTGTCCTTGGACGGCTaGGGCGTGAAGGGCCGGACTGCAGCAGCAGGAGGACTTTCTTGC +
Preference number: 5 (lower is better)
Translates to: VWGFRKAGGKVSLDG*GVKGRTAAAGGLSC
Trigger: GCAAGAAAGTCCTCCTGCTGCTGCAGTCCGGCCCTTCACGCCCCAGCCGTCCAAGGACACCTTCCCTCCAGCCTTTCGAAAACCCCAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS-3UTR CAA 90 bp GTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGGGAGGGAAGGTGTCCTaGGACGGCTGGGGCGTGAAG +
Preference number: 5 (lower is better)
Translates to: VGDGARWHRSFLAGQRNGGGKVS*DGWGVK
Trigger: CTTCACGCCCCAGCCGTCCAAGGACACCTTCCCTCC...CCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 90 bp TGGAGGGAAGGTGTCCTTGGACGGCTGGGGCGTGAAGGGCCGGACTaGAGCAGCAGGAGGACTTTCTTGCTTAGATGCTGGAGACAGGAC +
Preference number: 5 (lower is better)
Translates to: WREGVLGRLGREGPD*SSRRTFLLRCWRQD
Trigger: GTCCTGTCTCCAGCATCTAAGCAAGAAAGTCCTCCTGCTGCTGCAGTCCGGCCCTTCACGCCCCAGCCGTCCAAGGACACCTTCCCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS GCA 90 bp AGGAGGCAGAGACACCTGCCCGGTGATTTCAGGTGGGCGCATACGTaGGGAGTCTTCTTCGGACACCTCTGGCTCCCCAGATGGGTATGG +
Preference number: 5 (lower is better)
Translates to: RRQRHLPGDFRWAHT*GVFFGHLWLPRWVW
Trigger: CCATACCCATCTGGGGAGCCAGAGGTGTCCGAAGAAGACTCCGCACGTATGCGCCCACCTGAAATCACCGGGCAGGTGTCTCTGCCTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 90 bp TGTCCTTTTGCCAGGAGGCAGAGACACCTGCCCGGTGATTTCAGGTaGGCGCATACGTGCGGAGTCTTCTTCGGACACCTCTGGCTCCCC +
Preference number: 5 (lower is better)
Translates to: CPFARRQRHLPGDFR*AHTCGVFFGHLWLP
Trigger: GGGGAGCCAGAGGTGTCCGAAGAAGACTCCGCACGTATGCGCCCACCTGAAATCACCGGGCAGGTGTCTCTGCCTCCTGGCAAAAGGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp GGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCCAGCAGCCACACGACTaGGGGCTGACACTGCTTGTT +
Preference number: 5 (lower is better)
Translates to: GIPKPAGAQGQLEMVPDGQQPHD*GLTLLV
Trigger: AACAAGCAGTGTCAGCCCCAAGTCGTGTGGCTGCTG...GCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 90 bp TTGTCGTGGTGGCCATCGATCCTGCCGTTCTTCAGCATCTCCAGCTaGCTCGTCAGCTCCTCCACTTTCGACACAGCCAGCACCAGCTCC +
Preference number: 5 (lower is better)
Translates to: LSWWPSILPFFSISS*LVSSSTFDTASTSS
Trigger: GGAGCTGGTGCTGGCTGTGTCGAAAGTGGAGGAGCTGACGAGGCAGCTGGAGATGCTGAAGAACGGCAGGATCGATGGCCACCACGACAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp GGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCGCTTGCCATACACACTaGAAAAGTGGGGGCCTCTGG +
Preference number: 5 (lower is better)
Translates to: GIPKPAGAQGQLEMVPDGACHTH*KSGGLW
Trigger: CCAGAGGCCCCCACTTTTCAAGTGTGTATGGCAAGC...GCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCGTTCTCTGGGTGCTGTaGTGGATTCTGGGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: KACWCSGAVGDGARWHRSVLWVL*WILGSS
Trigger: GCTGCTGCCCAGAATCCACAACAGCACCCAGAGAAC...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp GGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCCGCAAGTTTGTCCTTTaGCCAGGAGGCAGAGACACC +
Preference number: 5 (lower is better)
Translates to: GIPKPAGAQGQLEMVPDGRKFVL*PGGRDT
Trigger: GGTGTCTCTGCCTCCTGGCAAAAGGACAAACTTGCG...GCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp GGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCCACACTTGGACATTGTaGCAGGAGGCAGCACAATGC +
Preference number: 5 (lower is better)
Translates to: GIPKPAGAQGQLEMVPDGHTWTL*QEAAQC
Trigger: GCATTGTGCTGCCTCCTGCAACAATGTCCAAGTGTG...GCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 90 bp ACTTTCTTGCTTAGATGCTGGAGACAGGACTTGGTCCTGACCACCTaGAGGGGCACCAGGAGACAGCAGCATCCTTGCCTGTGGCCCTGC +
Preference number: 5 (lower is better)
Translates to: TFLLRCWRQDLVLTT*RGTRRQQHPCLWPC
Trigger: GCAGGGCCACAGGCAAGGATGCTGCTGTCTCCTGGTGCCCCTTCAGGTGGTCAGGACCAAGTCCTGTCTCCAGCATCTAAGCAAGAAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS CCA 90 bp CTCCGGACTGCCAGGCTTCCCCTGGCTACAGGAGTAAATGTTCTCTaGGTGCTGTTGTGGATTCTGGGCAGCAGCTATCACAGGCTTGCC +
Preference number: 5 (lower is better)
Translates to: LRTARLPLATGVNVL*VLLWILGSSYHRLA
Trigger: GGCAAGCCTGTGATAGCTGCTGCCCAGAATCCACAACAGCACCCAGAGAACATTTACTCCTGTAGCCAGGGGAAGCCTGGCAGTCCGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS-3UTR CAA 90 bp GGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCCTCTGTTGTTGCAGCTaGGCATTCTGCTCTTGGTTC +
Preference number: 5 (lower is better)
Translates to: GIPKPAGAQGQLEMVPDGLCCCS*AFCSWF
Trigger: GAACCAAGAGCAGAATGCCAAGCTGCAACAACAGAG...GCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp CCCACAGTCCAGCAAATGGTCCCATTTCTTGACAAAGCCAGATGGCTGCCTCCTGTGGGGGCCTCTGGGTaGCGTCTTGGTCAAGGCACT +
Preference number: 5 (lower is better)
Translates to: PTVQQMVPFLDKARWLPPVGASG*RLGQGT
Trigger: AGTGCCTTGACCAAGACGCAACCCAGAGGCCCCCAC...AGGAGGCAGCCATCTGGCTTTGTCAAGAAATGGGACCATTTGCTGGACTGTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGGCAGCTATCACAGGCTaGCCATACACACTTGAAAAG +
Preference number: 5 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQAAITG*PYTLEK
Trigger: CTTTTCAAGTGTGTATGGCAAGCCTGTGATAGCTGC...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 90 bp GGCTCTCATGAACTGAAGAAACGGTCTCTGTCTCGGGCTCCGGACTaGCAGGCTTCCCCTGGCTACAGGAGTAAATGTTCTCTGGGTGCT +
Preference number: 5 (lower is better)
Translates to: GSHELKKRSLSRAPD*QASPGYRSKCSLGA
Trigger: AGCACCCAGAGAACATTTACTCCTGTAGCCAGGGGAAGCCTGGCAGTCCGGAGCCCGAGACAGAGACCGTTTCTTCAGTTCATGAGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 90 bp ACTTGGTCCAGAGCAGTTCCAGCACTCTGGGGTACAGAAGAGCCTTaGCTGGGTAAGAGGTCGGCATTGGAAGGGTTCCAATCGGGGCTA +
Preference number: 5 (lower is better)
Translates to: TWSRAVPALWGTEEP*LGKRSALEGFQSGL
Trigger: TAGCCCCGATTGGAACCCTTCCAATGCCGACCTCTTACCCAGCCAAGGCTCTTCTGTACCCCAGAGTGCTGGAACTGCTCTGGACCAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 90 bp ACTCAAGGCCTGCAGAAGGAGCTGGCACGTCACTGTTCTCCGTACTaGCACTCCCCATATCCTCTGGGGACAGTGGTTCAGGGACTAAAG +
Preference number: 5 (lower is better)
Translates to: TQGLQKELARHCSPY*HSPYPLGTVVQGLK
Trigger: CTTTAGTCCCTGAACCACTGTCCCCAGAGGATATGGGGAGTGCCAGTACGGAGAACAGTGACGTGCCAGCTCCTTCTGCAGGCCTTGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp GTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGTTCTCTCCAGGCTCCTaGCACAGATCCACCACATCT +
Preference number: 5 (lower is better)
Translates to: VGDGARWHRSFLAGQRNGFSPGS*HRSTTS
Trigger: AGATGTGGTGGATCTGTGCAAGGAGCCTGGAGAGAA...CCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp GATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACCAAACACTCCCTCTGTaGTTGCAGCTTGGCATTCTG +
Preference number: 5 (lower is better)
Translates to: DPKACWCSGAVGDGARWHQTLPL*LQLGIL
Trigger: CAGAATGCCAAGCTGCAACAACAGAGGGAGTGTTTG...GTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp CCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTAGCAGGAGGACTTTCTaGCTTAGATGCTGGAGACAG +
Preference number: 5 (lower is better)
Translates to: PKPAGAQGQLEMVPDGTGSRRTF*LRCWRQ
Trigger: CTGTCTCCAGCATCTAAGCAAGAAAGTCCTCCTGCT...ACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp GGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCTTACACACTTGGACATaGTTGCAGGAGGCAGCACAA +
Preference number: 5 (lower is better)
Translates to: GIPKPAGAQGQLEMVPDGLHTWT*LQEAAQ
Trigger: TTGTGCTGCCTCCTGCAACAATGTCCAAGTGTGTAA...GCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTCAGGCCAAGCTCCTTaGTCTTGGTTTAATTCTTGG +
Preference number: 5 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQSGQAP*SWFNSW
Trigger: CCAAGAATTAAACCAAGACAAAGGAGCTTGGCCTGA...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 90 bp GCTGAGTGGTCGAGGAATCCTTTCGTTTTCATGGCTCTCATGAACTaGAGAAACGGTCTCTGTCTCGGGCTCCGGACTGCCAGGCTTCCC +
Preference number: 5 (lower is better)
Translates to: AEWSRNPFVFMALMN*RNGLCLGLRTARLP
Trigger: GGGAAGCCTGGCAGTCCGGAGCCCGAGACAGAGACCGTTTCTTCAGTTCATGAGAGCCATGAAAACGAAAGGATTCCTCGACCACTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 90 bp GTTGGGCTGAGTGGTCGAGGAATCCTTTCGTTTTCATGGCTCTCATaGACTGAAGAAACGGTCTCTGTCTCGGGCTCCGGACTGCCAGGC +
Preference number: 5 (lower is better)
Translates to: VGLSGRGILSFSWLS*TEETVSVSGSGLPG
Trigger: GCCTGGCAGTCCGGAGCCCGAGACAGAGACCGTTTCTTCAGTTCATGAGAGCCATGAAAACGAAAGGATTCCTCGACCACTCAGCCCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 90 bp ATTGGTACTGCTGTCTGTGACTCCCTCAGACACATACTCAAGGCCTaGAGAAGGAGCTGGCACGTCACTGTTCTCCGTACTGGCACTCCC +
Preference number: 5 (lower is better)
Translates to: IGTAVCDSLRHILKA*RRSWHVTVLRTGTP
Trigger: GGGAGTGCCAGTACGGAGAACAGTGACGTGCCAGCTCCTTCTGCAGGCCTTGAGTATGTGTCTGAGGGAGTCACAGACAGCAGTACCAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 90 bp GCAATCTCCCCATCGTCAACTTGGTCCAGAGCAGTTCCAGCACTCTaGGGTACAGAAGAGCCTTGGCTGGGTAAGAGGTCGGCATTGGAA +
Preference number: 5 (lower is better)
Translates to: AISPSSTWSRAVPAL*GTEEPWLGKRSALE
Trigger: TTCCAATGCCGACCTCTTACCCAGCCAAGGCTCTTCTGTACCCCAGAGTGCTGGAACTGCTCTGGACCAAGTTGACGATGGGGAGATTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp CCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTTTTTACACTTGGATCTaGGGATCTCGGTCCACTCAC +
Preference number: 5 (lower is better)
Translates to: PKPAGAQGQLEMVPDGTGFYTWI*GSRSTH
Trigger: GTGAGTGGACCGAGATCCCAAGATCCAAGTGTAAAA...ACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCCTGTTCAGCAGCTTGTaGCTGTTGACGTTGATCTTG +
Preference number: 5 (lower is better)
Translates to: KACWCSGAVGDGARWHRSLFSSL*LLTLIL
Trigger: CAAGATCAACGTCAACAGCAACAAGCTGCTGAACAG...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp GTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGCTCCTGTTCAGCAGCTaGTTGCTGTTGACGTTGATC +
Preference number: 5 (lower is better)
Translates to: VGDGARWHRSFLAGQRNGLLFSS*LLLTLI
Trigger: GATCAACGTCAACAGCAACAAGCTGCTGAACAGGAG...CCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp AGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGAACAGTGGAATAGATGGAGCTaGCTGCCACAGTCTGGGGTT +
Preference number: 5 (lower is better)
Translates to: RWCQMAQVLSGRSAEWEQWNRWS*LPQSGV
Trigger: AACCCCAGACTGTGGCAGCAAGCTCCATCTATTCCA...CTGTTCCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCTTTTCCTGGTGCCTGTaGCTGGGTGTACATGGAATA +
Preference number: 5 (lower is better)
Translates to: KACWCSGAVGDGARWHRSFSWCL*LGVHGI
Trigger: TATTCCATGTACACCCAGCAACAGGCACCAGGAAAA...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 90 bp AGACCTCATATTGGGCAGTGTCTGTATCTTCATTGGCCCCTCTGCTaGCTGCATGAGCAAGGAACCATCAGGCAGGGCTGGCTTCACGAG +
Preference number: 5 (lower is better)
Translates to: RPHIGQCLYLHWPLC*LHEQGTIRQGWLHE
Trigger: CTCGTGAAGCCAGCCCTGCCTGATGGTTCCTTGCTCATGCAGTCAGCAGAGGGGCCAATGAAGATACAGACACTGCCCAATATGAGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 90 bp GCCAGCACCAGCTCCCTCTGCTTCTGCTGGAACAAGCTATTCATCTaGTCGATCTCCTCCACGAGTTTTCCGTTGCTCAGCCTCTTTTGC +
Preference number: 5 (lower is better)
Translates to: ASTSSLCFCWNKLFI*SISSTSFPLLSLFC
Trigger: GCAAAAGAGGCTGAGCAACGGAAAACTCGTGGAGGAGATCGAGCAGATGAATAGCTTGTTCCAGCAGAAGCAGAGGGAGCTGGTGCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 90 bp TCCTGGTGCCTGTTGCTGGGTGTACATGGAATAGATGGAGCTTGCTaGCACAGTCTGGGGTTTTCGAAAGGCTGGAGGGAAGGTGTCCTT +
Preference number: 5 (lower is better)
Translates to: SWCLLLGVHGIDGAC*HSLGFSKGWREGVL
Trigger: AAGGACACCTTCCCTCCAGCCTTTCGAAAACCCCAGACTGTGGCAGCAAGCTCCATCTATTCCATGTACACCCAGCAACAGGCACCAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS CCA 90 bp TGGCCCTGCTGGCTTGAGCTTAGCCCCCACGGATGTAGCAGCTATTaGCAATTGCTGAGCATTTCCATCTGGCTTCATGTCAGAAGGCGA +
Preference number: 5 (lower is better)
Translates to: WPCWLELSPHGCSSY*QLLSISIWLHVRRR
Trigger: TCGCCTTCTGACATGAAGCCAGATGGAAATGCTCAGCAATTGCCAATAGCTGCTACATCCGTGGGGGCTAAGCTCAAGCCAGCAGGGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS-3UTR CAA 90 bp GGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCCATTTCTTTTTACACTaGGATCTTGGGATCTCGGTC +
Preference number: 5 (lower is better)
Translates to: GIPKPAGAQGQLEMVPDGHFFLH*DLGISV
Trigger: GACCGAGATCCCAAGATCCAAGTGTAAAAAGAAATG...GCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp AAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACAGGTCCAGCAGCTTGTTGCTGTaGACGTTGATCTTGCTGTTT +
Preference number: 5 (lower is better)
Translates to: KACWCSGAVGDGARWHRSSSLLL*TLILLF
Trigger: AAACAGCAAGATCAACGTCAACAGCAACAAGCTGCT...GGACCTGTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp ACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCTGCTGGTGCTCAGGGGCAGCATGTAAATATGGATTaGGGATTTCAACGGAGCTCT +
Preference number: 5 (lower is better)
Translates to: TSVQHPPGIPKPAGAQGQHVNMD*GFQRSS
Trigger: AGAGCTCCGTTGAAATCCCAAATCCATATTTACATG...CTGCCCCTGAGCACCAGCAGGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp GATCCCAAAGCCTGCTGGTGCTCAGGGGCAGTTGGAGATGGTGCCAGATGGCACACGTTATTCTGCAGATaGGTACTGCTGTCTGTGACT +
Preference number: 5 (lower is better)
Translates to: DPKACWCSGAVGDGARWHTLFCR*VLLSVT
Trigger: AGTCACAGACAGCAGTACCAATCTGCAGAATAACGT...GTGCCATCTGGCACCATCTCCAACTGCCCCTGAGCACCAGCAGGCTTTGGGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp GTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGGGGGAGCCTCTGGGTTaGTTTCTTCTACGTTATTCT +
Preference number: 5 (lower is better)
Translates to: VGDGARWHRSFLAGQRNGGEPLG*FLLRYS
Trigger: AGAATAACGTAGAAGAAACAAACCCAGAGGCTCCCC...CCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAAC
54% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 90 bp GGTAAGAGGTCGGCATTGGAAGGGTTCCAATCGGGGCTAGCTGGGTaGGCTTTAGAGCCTTTACTTTGTGAAGCAGCCCCAGACCTCATA +
Preference number: 5 (lower is better)
Translates to: GKRSALEGFQSGLAG*ALEPLLCEAAPDLI
Trigger: TATGAGGTCTGGGGCTGCTTCACAAAGTAAAGGCTCTAAAGCTCACCCAGCTAGCCCCGATTGGAACCCTTCCAATGCCGACCTCTTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp CCCACAGTCCAGCAAATGGTCCCATTTCTTGACAAAGCCAGATGGCTGCCTCCTACACTCCCTCTGTTGTaGCAGCTTGGCATTCTGCTC +
Preference number: 5 (lower is better)
Translates to: PTVQQMVPFLDKARWLPPTLPLL*QLGILL
Trigger: GAGCAGAATGCCAAGCTGCAACAACAGAGGGAGTGT...AGGAGGCAGCCATCTGGCTTTGTCAAGAAATGGGACCATTTGCTGGACTGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp CCCACAGTCCAGCAAATGGTCCCATTTCTTGACAAAGCCAGATGGCTGCCTCCTGTGTCTGTATCTTCATaGGCCCCTCTGCTGACTGCA +
Preference number: 5 (lower is better)
Translates to: PTVQQMVPFLDKARWLPPVSVSS*APLLTA
Trigger: TGCAGTCAGCAGAGGGGCCAATGAAGATACAGACAC...AGGAGGCAGCCATCTGGCTTTGTCAAGAAATGGGACCATTTGCTGGACTGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 90 bp CAAACTCTCCCTCCAGAGATGAATCTAGCAGCAAAGCAAGGGGGTTaGATTTCACCCTCATCCCGTGAGCAATCCGCTCGGAGCCAGTTT +
Preference number: 5 (lower is better)
Translates to: QTLPPEMNLAAKQGG*ISPSSREQSARSQF
Trigger: AAACTGGCTCCGAGCGGATTGCTCACGGGATGAGGGTGAAATTCAACCCCCTTGCTTTGCTGCTAGATTCATCTCTGGAGGGAGAGTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 90 bp CCTCCGATGCTCGCCGGGAACTTTGACACCATTTCTTTTTACACTTaGATCTTGGGATCTCGGTCCACTCACAATGTCCCTGTTAGGGGG +
Preference number: 5 (lower is better)
Translates to: PPMLAGNFDTISFYT*ILGSRSTHNVPVRG
Trigger: CCCCCTAACAGGGACATTGTGAGTGGACCGAGATCCCAAGATCCAAGTGTAAAAAGAAATGGTGTCAAAGTTCCCGGCGAGCATCGGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp CAGTTGGAGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGTGCTCGCCGGGAACTTaGACACCATTTCTTTTTACA +
Preference number: 5 (lower is better)
Translates to: QLEMVPDGTGPFWQVSGMCSPGT*TPFLFT
Trigger: TGTAAAAAGAAATGGTGTCAAAGTTCCCGGCGAGCA...CATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCTCCAACTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp AGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGAACAGCATCATTTGGTAGGCTaGGGTCATCAACCTCATAGA +
Preference number: 5 (lower is better)
Translates to: RWCQMAQVLSGRSAEWEQHHLVG*GHQPHR
Trigger: TCTATGAGGTTGATGACCCAAGCCTACCAAATGATG...CTGTTCCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp AGTTCTTCACTGATAACACACAAGTGTACAGCACCCGCCGGGGATCCCAAAGCCCAGGAACTTACACACTaGGACATTGTTGCAGGAGGC +
Preference number: 5 (lower is better)
Translates to: SSSLITHKCTAPAGDPKAQELTH*DIVAGG
Trigger: GCCTCCTGCAACAATGTCCAAGTGTGTAAGTTCCTG...GGCTTTGGGATCCCCGGCGGGTGCTGTACACTTGTGTGTTATCAGTGAAGAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp AGATGGTGCCAGATGGCACAGGTCCTTTCTGGCAGGTCAGCGGAATGGGAACAGTATAGTCCTAGCAAGTaGCGTGGAACATATCCTTCC +
Preference number: 5 (lower is better)
Translates to: RWCQMAQVLSGRSAEWEQYSPSK*RGTYPS
Trigger: GGAAGGATATGTTCCACGCAACTTGCTAGGACTATA...CTGTTCCCATTCCGCTGACCTGCCAGAAAGGACCTGTGCCATCTGGCACCATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 90 bp TACCAAAGGAGGGTGGGGCAGCACACTGGTCCACTGTGTCAAACATaGAAAAGGGACGCACTTTCTTCTCTTTCTCCCTCACAGCAATCT +
Preference number: 5 (lower is better)
Translates to: YQRRVGQHTGPLCQT*KRDALSSLSPSQQS
Trigger: AGATTGCTGTGAGGGAGAAAGAGAAGAAAGTGCGTCCCTTTTCCATGTTTGACACAGTGGACCAGTGTGCTGCCCCACCCTCCTTTGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 90 bp CCCCACGGATGTAGCAGCTATTGGCAATTGCTGAGCATTTCCATCTaGCTTCATGTCAGAAGGCGACTGAGCCGTTTGTCCAAAGTAAGG +
Preference number: 5 (lower is better)
Translates to: PHGCSSYWQLLSISI*LHVRRRLSRLSKVR
Trigger: CCTTACTTTGGACAAACGGCTCAGTCGCCTTCTGACATGAAGCCAGATGGAAATGCTCAGCAATTGCCAATAGCTGCTACATCCGTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS-3UTR CAA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGGCCACGGCCGACTGGTaGTCGTGGTGGCCATCGATC +
Preference number: 5 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLATADW*SWWPSI
Trigger: GATCGATGGCCACCACGACAACCAGTCGGCCGTGGC...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 90 bp GTTCCAATCGGGGCTAGCTGGGTGAGCTTTAGAGCCTTTACTTTGTaGAGCAGCCCCAGACCTCATATTGGGCAGTGTCTGTATCTTCAT +
Preference number: 5 (lower is better)
Translates to: VPIGASWVSFRAFTL*SSPRPHIGQCLYLH
Trigger: ATGAAGATACAGACACTGCCCAATATGAGGTCTGGGGCTGCTTCACAAAGTAAAGGCTCTAAAGCTCACCCAGCTAGCCCCGATTGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 90 bp GTCAGGTCCAGCCTAGGACTGTTAACCCCATTCTCCTTCCTCCGATaGTCGCCGGGAACTTTGACACCATTTCTTTTTACACTTGGATCT +
Preference number: 5 (lower is better)
Translates to: VRSSLGLLTPFSFLR*SPGTLTPFLFTLGS
Trigger: AGATCCAAGTGTAAAAAGAAATGGTGTCAAAGTTCCCGGCGAGCATCGGAGGAAGGAGAATGGGGTTAACAGTCCTAGGCTGGACCTGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 90 bp ATCTGCTCGATCTCCTCCACGAGTTTTCCGTTGCTCAGCCTCTTTTaGTCCACATGGCCCTTTAGCGCTCTCACTTTCTTAAGCTTAGCT +
Preference number: 5 (lower is better)
Translates to: ICSISSTSFPLLSLF*STWPFSALTFLSLA
Trigger: AGCTAAGCTTAAGAAAGTGAGAGCGCTAAAGGGCCATGTGGAGCAAAAGAGGCTGAGCAACGGAAAACTCGTGGAGGAGATCGAGCAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 90 bp GTCTGCAGCAGTCTGCATGTCACTGTAGGTCATAGCAAACACAGCTaGTCCAGACTCCACCAGGAACTTACACACTTGGACATTGTTGCA +
Preference number: 5 (lower is better)
Translates to: VCSSLHVTVGHSKHS*SRLHQELTHLDIVA
Trigger: TGCAACAATGTCCAAGTGTGTAAGTTCCTGGTGGAGTCTGGAGCAGCTGTGTTTGCTATGACCTACAGTGACATGCAGACTGCTGCAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 90 bp ACCAGGAACTTCACAATTTCTGTGTGGCCTGCACACACAGCATTATaGAGAGCTGTGATGCCCTCATCATTTGGTAGGCTTGGGTCATCA +
Preference number: 5 (lower is better)
Translates to: TRNFTISVWPAHTAL*RAVMPSSFGRLGSS
Trigger: TGATGACCCAAGCCTACCAAATGATGAGGGCATCACAGCTCTTCATAATGCTGTGTGTGCAGGCCACACAGAAATTGTGAAGTTCCTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 90 bp TCACAATTTCTGTGTGGCCTGCACACACAGCATTATGAAGAGCTGTaGTGCCCTCATCATTTGGTAGGCTTGGGTCATCAACCTCATAGA +
Preference number: 5 (lower is better)
Translates to: SQFLCGLHTQHYEEL*CPHHLVGLGHQPHR
Trigger: TCTATGAGGTTGATGACCCAAGCCTACCAAATGATGAGGGCATCACAGCTCTTCATAATGCTGTGTGTGCAGGCCACACAGAAATTGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 90 bp TCAAGTAAGTGGGGAGCCTCTGGGTTTGTTTCTTCTACGTTATTCTaGAGATTGGTACTGCTGTCTGTGACTCCCTCAGACACATACTCA +
Preference number: 5 (lower is better)
Translates to: SSKWGASGFVSSTLF*RLVLLSVTPSDTYS
Trigger: TGAGTATGTGTCTGAGGGAGTCACAGACAGCAGTACCAATCTGCAGAATAACGTAGAAGAAACAAACCCAGAGGCTCCCCACTTACTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGGCCCCAGACCTCATATaGGGCAGTGTCTGTATCTTC +
Preference number: 5 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLAPDLI*GSVCIF
Trigger: GAAGATACAGACACTGCCCAATATGAGGTCTGGGGC...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGAGCAAAGCAAGGGGGTaGAATTTCACCCTCATCCCG +
Preference number: 5 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLSKARG*NFTLIP
Trigger: CGGGATGAGGGTGAAATTCAACCCCCTTGCTTTGCT...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGACGGCCACCTCTGAATaGCGCTTATTCAAACACTCC +
Preference number: 5 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLTATSE*RLFKHS
Trigger: GGAGTGTTTGAATAAGCGCAATTCAGAGGTGGCCGT...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGCAGTTTTCCGCAAGTTaGTCCTTTTGCCAGGAGGCA +
Preference number: 5 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLQFSAS*SFCQEA
Trigger: TGCCTCCTGGCAAAAGGACAAACTTGCGGAAAACTG...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGGCGAACTTCATTCCTTaGACTTCCAAACCGCTGAAG +
Preference number: 5 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLANFIP*TSKPLK
Trigger: CTTCAGCGGTTTGGAAGTCAAAGGAATGAAGTTCGC...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGAGCAGCTATTGGCAATaGCTGAGCATTTCCATCTGG +
Preference number: 5 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLSSYWQ*LSISIW
Trigger: CCAGATGGAAATGCTCAGCAATTGCCAATAGCTGCT...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 90 bp AGGCGACTGAGCCGTTTGTCCAAAGTAAGGCAAATGAATCTGTTTTaGCTTTGTAGGAACGGGAGGTGGTACTTTAGCTACATTTTTATT +
Preference number: 5 (lower is better)
Translates to: RRLSRLSKVRQMNLF*LCRNGRWYFSYIFI
Trigger: AATAAAAATGTAGCTAAAGTACCACCTCCCGTTCCTACAAAGCCAAAACAGATTCATTTGCCTTACTTTGGACAAACGGCTCAGTCGCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS-3UTR CAA 90 bp ACGGCACATTCTTCATTGCTTCTGAGCTATACTGTCATTAAAGTAAGCCTTCTGTGCTCTTGGTTCAGTTaGTTTCTTAACTGCAGCTCC +
Preference number: 5 (lower is better)
Translates to: TAHSSLLLSYTVIKVSLLCSWFS*FLNCSS
Trigger: GGAGCTGCAGTTAAGAAACAAACTGAACCAAGAGCA...CAGAAGGCTTACTTTAATGACAGTATAGCTCAGAAGCAATGAAGAATGTGCCGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp GGCACCAGGAGACAGCAGCATCCTTGCCTGTGGCCCTaGTGGCTTGAGCTTAGCCCCCACGGATGTAGCAGC +
Preference number: 6 (lower is better)
Translates to: GTRRQQHPCLWP*WLELSPHGCSS
Trigger: GCTGCTACATCCGTGGGGGCTAAGCTCAAGCCAGCAGGGCCACAGGCAAGGATGCTGCTGTCTCCTGGTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS CCA 72 bp CGGTCCAGCTCAGCCACGGCCGACTGGTTGTCGTGGTaGCCATCGATCCTGCCGTTCTTCAGCATCTCCAGC +
Preference number: 6 (lower is better)
Translates to: RSSSATADWLSW*PSILPFFSISS
Trigger: GCTGGAGATGCTGAAGAACGGCAGGATCGATGGCCACCACGACAACCAGTCGGCCGTGGCTGAGCTGGACCG
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 72 bp AGGCGGTCCAGCTCAGCCACGGCCGACTGGTTGTCGTaGTGGCCATCGATCCTGCCGTTCTTCAGCATCTCC +
Preference number: 6 (lower is better)
Translates to: RRSSSATADWLS*WPSILPFFSIS
Trigger: GGAGATGCTGAAGAACGGCAGGATCGATGGCCACCACGACAACCAGTCGGCCGTGGCTGAGCTGGACCGCCT
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp CCACGGCCGACTGGTTGTCGTGGTGGCCATCGATCCTaGCGTTCTTCAGCATCTCCAGCTGCCTCGTCAGCT +
Preference number: 6 (lower is better)
Translates to: PRPTGCRGGHRS*RSSASPAASSA
Trigger: AGCTGACGAGGCAGCTGGAGATGCTGAAGAACGGCAGGATCGATGGCCACCACGACAACCAGTCGGCCGTGG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 72 bp TGGGCGCATACGTGCGGAGTCTTCTTCGGACACCTCTaGCTCCCCAGATGGGTATGGAGGGGGTGGGTATGG +
Preference number: 6 (lower is better)
Translates to: WAHTCGVFFGHL*LPRWVWRGWVW
Trigger: CCATACCCACCCCCTCCATACCCATCTGGGGAGCCAGAGGTGTCCGAAGAAGACTCCGCACGTATGCGCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 72 bp GCCAGGAGGCAGAGACACCTGCCCGGTGATTTCAGGTaGGCGCATACGTGCGGAGTCTTCTTCGGACACCTC +
Preference number: 6 (lower is better)
Translates to: ARRQRHLPGDFR*AHTCGVFFGHL
Trigger: GAGGTGTCCGAAGAAGACTCCGCACGTATGCGCCCACCTGAAATCACCGGGCAGGTGTCTCTGCCTCCTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp AGACACCTGCCCGGTGATTTCAGGTGGGCGCATACGTaGGGAGTCTTCTTCGGACACCTCTGGCTCCCCAGA +
Preference number: 6 (lower is better)
Translates to: RHLPGDFRWAHT*GVFFGHLWLPR
Trigger: TCTGGGGAGCCAGAGGTGTCCGAAGAAGACTCCGCACGTATGCGCCCACCTGAAATCACCGGGCAGGTGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp TGGCCATCGATCCTGCCGTTCTTCAGCATCTCCAGCTaGCTCGTCAGCTCCTCCACTTTCGACACAGCCAGC +
Preference number: 6 (lower is better)
Translates to: WPSILPFFSISS*LVSSSTFDTAS
Trigger: GCTGGCTGTGTCGAAAGTGGAGGAGCTGACGAGGCAGCTGGAGATGCTGAAGAACGGCAGGATCGATGGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp CGCAAGTTTGTCCTTTTGCCAGGAGGCAGAGACACCTaGCCGGTGATTTCAGGTGGGCGCATACGTGCGGAG +
Preference number: 6 (lower is better)
Translates to: RKFVLLPGGRDT*PVISGGRIRAE
Trigger: CTCCGCACGTATGCGCCCACCTGAAATCACCGGGCAGGTGTCTCTGCCTCCTGGCAAAAGGACAAACTTGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 72 bp ACCAGGAGACAGCAGCATCCTTGCCTGTGGCCCTGCTaGCTTGAGCTTAGCCCCCACGGATGTAGCAGCTAT +
Preference number: 6 (lower is better)
Translates to: TRRQQHPCLWPC*LELSPHGCSSY
Trigger: ATAGCTGCTACATCCGTGGGGGCTAAGCTCAAGCCAGCAGGGCCACAGGCAAGGATGCTGCTGTCTCCTGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS CAA 72 bp CGTGAGCAATCCGCTCGGAGCCAGTTTTCCGCAAGTTaGTCCTTTTGCCAGGAGGCAGAGACACCTGCCCGG +
Preference number: 6 (lower is better)
Translates to: REQSARSQFSAS*SFCQEAETPAR
Trigger: CCGGGCAGGTGTCTCTGCCTCCTGGCAAAAGGACAAACTTGCGGAAAACTGGCTCCGAGCGGATTGCTCACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 72 bp CAGCTCAGGTCTGGAGGGCATCCGTGGCATAGTGGATaGCTGGATGTAAGGGCCTACAGCAGCCACACGACT +
Preference number: 6 (lower is better)
Translates to: QLRSGGHPWHSG*LDVRAYSSHTT
Trigger: AGTCGTGTGGCTGCTGTAGGCCCTTACATCCAGTCATCCACTATGCCACGGATGCCCTCCAGACCTGAGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 72 bp CTTAGATGCTGGAGACAGGACTTGGTCCTGACCACCTaGAGGGGCACCAGGAGACAGCAGCATCCTTGCCTG +
Preference number: 6 (lower is better)
Translates to: LRCWRQDLVLTT*RGTRRQQHPCL
Trigger: CAGGCAAGGATGCTGCTGTCTCCTGGTGCCCCTTCAGGTGGTCAGGACCAAGTCCTGTCTCCAGCATCTAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS CCA 72 bp CTGCAGAAGGAGCTGGCACGTCACTGTTCTCCGTACTaGCACTCCCCATATCCTCTGGGGACAGTGGTTCAG +
Preference number: 6 (lower is better)
Translates to: LQKELARHCSPY*HSPYPLGTVVQ
Trigger: CTGAACCACTGTCCCCAGAGGATATGGGGAGTGCCAGTACGGAGAACAGTGACGTGCCAGCTCCTTCTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp TTAGTAGCCAGCATTTGTTGCTGGGCCTCGATCTGCTaGTGCTGGCGAGATGCCATCTCCTGGAGCTCAGCA +
Preference number: 6 (lower is better)
Translates to: LVASICCWASIC*CWRDAISWSSA
Trigger: TGCTGAGCTCCAGGAGATGGCATCTCGCCAGCAGCAGCAGATCGAGGCCCAGCAACAAATGCTGGCTACTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp TCCTTAGTAGCCAGCATTTGTTGCTGGGCCTCGATCTaGTGCTGCTGGCGAGATGCCATCTCCTGGAGCTCA +
Preference number: 6 (lower is better)
Translates to: SLVASICCWASI*CCWRDAISWSS
Trigger: TGAGCTCCAGGAGATGGCATCTCGCCAGCAGCAGCAGATCGAGGCCCAGCAACAAATGCTGGCTACTAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp TTGCCATACACACTTGAAAAGTGGGGGCCTCTGGGTTaGGTCTTGGTCAAGGCACTCTGCACAGCCTGCTGG +
Preference number: 6 (lower is better)
Translates to: LPYTLEKWGPLG*VLVKALCTACW
Trigger: CCAGCAGGCTGTGCAGAGTGCCTTGACCAAGACGCAACCCAGAGGCCCCCACTTTTCAAGTGTGTATGGCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS CCA 72 bp CCATCGTCAACTTGGTCCAGAGCAGTTCCAGCACTCTaGGGTACAGAAGAGCCTTGGCTGGGTAAGAGGTCG +
Preference number: 6 (lower is better)
Translates to: PSSTWSRAVPAL*GTEEPWLGKRS
Trigger: CGACCTCTTACCCAGCCAAGGCTCTTCTGTACCCCAGAGTGCTGGAACTGCTCTGGACCAAGTTGACGATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp GAACTGAAGAAACGGTCTCTGTCTCGGGCTCCGGACTaGCAGGCTTCCCCTGGCTACAGGAGTAAATGTTCT +
Preference number: 6 (lower is better)
Translates to: ELKKRSLSRAPD*QASPGYRSKCS
Trigger: AGAACATTTACTCCTGTAGCCAGGGGAAGCCTGGCAGTCCGGAGCCCGAGACAGAGACCGTTTCTTCAGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp GCTGTCTGTGACTCCCTCAGACACATACTCAAGGCCTaGAGAAGGAGCTGGCACGTCACTGTTCTCCGTACT +
Preference number: 6 (lower is better)
Translates to: AVCDSLRHILKA*RRSWHVTVLRT
Trigger: AGTACGGAGAACAGTGACGTGCCAGCTCCTTCTGCAGGCCTTGAGTATGTGTCTGAGGGAGTCACAGACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 72 bp AGAGCAGTTCCAGCACTCTGGGGTACAGAAGAGCCTTaGCTGGGTAAGAGGTCGGCATTGGAAGGGTTCCAA +
Preference number: 6 (lower is better)
Translates to: RAVPALWGTEEP*LGKRSALEGFQ
Trigger: TTGGAACCCTTCCAATGCCGACCTCTTACCCAGCCAAGGCTCTTCTGTACCCCAGAGTGCTGGAACTGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 72 bp TTCCTCAGGGTACCAAAGGAGGGTGGGGCAGCACACTaGTCCACTGTGTCAAACATGGAAAAGGGACGCACT +
Preference number: 6 (lower is better)
Translates to: FLRVPKEGGAAH*STVSNMEKGRT
Trigger: AGTGCGTCCCTTTTCCATGTTTGACACAGTGGACCAGTGTGCTGCCCCACCCTCCTTTGGTACCCTGAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 72 bp TCTGGGCAGCAGCTATCACAGGCTTGCCATACACACTaGAAAAGTGGGGGCCTCTGGGTTGCGTCTTGGTCA +
Preference number: 6 (lower is better)
Translates to: SGQQLSQACHTH*KSGGLWVASWS
Trigger: TGACCAAGACGCAACCCAGAGGCCCCCACTTTTCAAGTGTGTATGGCAAGCCTGTGATAGCTGCTGCCCAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS CAA 72 bp CCCCTGGCTACAGGAGTAAATGTTCTCTGGGTGCTGTaGTGGATTCTGGGCAGCAGCTATCACAGGCTTGCC +
Preference number: 6 (lower is better)
Translates to: PLATGVNVLWVL*WILGSSYHRLA
Trigger: GGCAAGCCTGTGATAGCTGCTGCCCAGAATCCACAACAGCACCCAGAGAACATTTACTCCTGTAGCCAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS CAA 90 bp GCCAGGCTTCCCCTGGCTACAGGAGTAAATGTTCTCTGGGTGCTGTaGTGGATTCTGGGCAGCAGCTATCACAGGCTTGCCATACACACT +
Preference number: 6 (lower is better)
Translates to: ARLPLATGVNVLWVL*WILGSSYHRLAIHT
Trigger: AGTGTGTATGGCAAGCCTGTGATAGCTGCTGCCCAGAATCCACAACAGCACCCAGAGAACATTTACTCCTGTAGCCAGGGGAAGCCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS TCA 72 bp GGGGCTAGCTGGGTGAGCTTTAGAGCCTTTACTTTGTaGAGCAGCCCCAGACCTCATATTGGGCAGTGTCTG +
Preference number: 6 (lower is better)
Translates to: GASWVSFRAFTL*SSPRPHIGQCL
Trigger: CAGACACTGCCCAATATGAGGTCTGGGGCTGCTTCACAAAGTAAAGGCTCTAAAGCTCACCCAGCTAGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 72 bp TCGGCATTGGAAGGGTTCCAATCGGGGCTAGCTGGGTaGGCTTTAGAGCCTTTACTTTGTGAAGCAGCCCCA +
Preference number: 6 (lower is better)
Translates to: SALEGFQSGLAG*ALEPLLCEAAP
Trigger: TGGGGCTGCTTCACAAAGTAAAGGCTCTAAAGCTCACCCAGCTAGCCCCGATTGGAACCCTTCCAATGCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 72 bp CCTCCAGAGATGAATCTAGCAGCAAAGCAAGGGGGTTaGATTTCACCCTCATCCCGTGAGCAATCCGCTCGG +
Preference number: 6 (lower is better)
Translates to: PPEMNLAAKQGG*ISPSSREQSAR
Trigger: CCGAGCGGATTGCTCACGGGATGAGGGTGAAATTCAACCCCCTTGCTTTGCTGCTAGATTCATCTCTGGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp TTTCCATCAGGTGAAACCGGGAGATTCTCTTTCTGCTaGAGTGCTGCCTTCTTCTTCCACAGCCGGTCCCTC +
Preference number: 6 (lower is better)
Translates to: FPSGETGRFSFC*SAAFFFHSRSL
Trigger: GAGGGACCGGCTGTGGAAGAAGAAGGCAGCACTGCAGCAGAAAGAGAATCTCCCGGTTTCACCTGATGGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 72 bp ACACACTTGAAAAGTGGGGGCCTCTGGGTTGCGTCTTaGTCAAGGCACTCTGCACAGCCTGCTGGAAGTTTT +
Preference number: 6 (lower is better)
Translates to: THLKSGGLWVAS*SRHSAQPAGSF
Trigger: AAAACTTCCAGCAGGCTGTGCAGAGTGCCTTGACCAAGACGCAACCCAGAGGCCCCCACTTTTCAAGTGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS CAA 72 bp CTCTTTCTCCCTCACAGCAATCTCCCCATCGTCAACTaGGTCCAGAGCAGTTCCAGCACTCTGGGGTACAGA +
Preference number: 6 (lower is better)
Translates to: LFLPHSNLPIVN*VQSSSSTLGYR
Trigger: TCTGTACCCCAGAGTGCTGGAACTGCTCTGGACCAAGTTGACGATGGGGAGATTGCTGTGAGGGAGAAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 72 bp TACACACTTGAAAAGTGGGGGCCTCTGGGTTGCGTCTaGGTCAAGGCACTCTGCACAGCCTGCTGGAAGTTT +
Preference number: 6 (lower is better)
Translates to: YTLEKWGPLGCV*VKALCTACWKF
Trigger: AAACTTCCAGCAGGCTGTGCAGAGTGCCTTGACCAAGACGCAACCCAGAGGCCCCCACTTTTCAAGTGTGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS CAA 72 bp TGCTGTTGTGGATTCTGGGCAGCAGCTATCACAGGCTaGCCATACACACTTGAAAAGTGGGGGCCTCTGGGT +
Preference number: 6 (lower is better)
Translates to: CCCGFWAAAITG*PYTLEKWGPLG
Trigger: ACCCAGAGGCCCCCACTTTTCAAGTGTGTATGGCAAGCCTGTGATAGCTGCTGCCCAGAATCCACAACAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS TCA 72 bp TCGAGGAATCCTTTCGTTTTCATGGCTCTCATGAACTaGAGAAACGGTCTCTGTCTCGGGCTCCGGACTGCC +
Preference number: 6 (lower is better)
Translates to: SRNPFVFMALMN*RNGLCLGLRTA
Trigger: GGCAGTCCGGAGCCCGAGACAGAGACCGTTTCTTCAGTTCATGAGAGCCATGAAAACGAAAGGATTCCTCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 72 bp AGCAAAGCAAGGGGGTTGAATTTCACCCTCATCCCGTaGGCAATCCGCTCGGAGCCAGTTTTCCGCAAGTTT +
Preference number: 6 (lower is better)
Translates to: SKARGLNFTLIP*AIRSEPVFRKF
Trigger: AAACTTGCGGAAAACTGGCTCCGAGCGGATTGCTCACGGGATGAGGGTGAAATTCAACCCCCTTGCTTTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp AGATTTCCATCAGGTGAAACCGGGAGATTCTCTTTCTaGTGCAGTGCTGCCTTCTTCTTCCACAGCCGGTCC +
Preference number: 6 (lower is better)
Translates to: RFPSGETGRFSF*CSAAFFFHSRS
Trigger: GGACCGGCTGTGGAAGAAGAAGGCAGCACTGCAGCAGAAAGAGAATCTCCCGGTTTCACCTGATGGAAATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp TATTTACAGCCTGAGCATCCCGCAAGATGTCCTCGCTaGTCTGGTTTTTCCTCAGGGTACCAAAGGAGGGTG +
Preference number: 6 (lower is better)
Translates to: YLQPEHPARCPR*SGFSSGYQRRV
Trigger: CACCCTCCTTTGGTACCCTGAGGAAAAACCAGAGCAGCGAGGACATCTTGCGGGATGCTCAGGCTGTAAATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 72 bp TTCCTGGTGCCTGTTGCTGGGTGTACATGGAATAGATaGAGCTTGCTGCCACAGTCTGGGGTTTTCGAAAGG +
Preference number: 6 (lower is better)
Translates to: FLVPVAGCTWNR*SLLPQSGVFER
Trigger: CCTTTCGAAAACCCCAGACTGTGGCAGCAAGCTCCATCTATTCCATGTACACCCAGCAACAGGCACCAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS CAA 72 bp ATGACTGGATGTAAGGGCCTACAGCAGCCACACGACTaGGGGCTGACACTGCTTGTTGGGGAAGATTTCCAT +
Preference number: 6 (lower is better)
Translates to: MTGCKGLQQPHD*GLTLLVGEDFH
Trigger: ATGGAAATCTTCCCCAACAAGCAGTGTCAGCCCCAAGTCGTGTGGCTGCTGTAGGCCCTTACATCCAGTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 72 bp CCAGACTCCACCAGGAACTTACACACTTGGACATTGTaGCAGGAGGCAGCACAATGCAATGGCGTCCATCCA +
Preference number: 6 (lower is better)
Translates to: PDSTRNLHTWTL*QEAAQCNGVHP
Trigger: TGGATGGACGCCATTGCATTGTGCTGCCTCCTGCAACAATGTCCAAGTGTGTAAGTTCCTGGTGGAGTCTGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 72 bp GCTCCAGACTCCACCAGGAACTTACACACTTGGACATaGTTGCAGGAGGCAGCACAATGCAATGGCGTCCAT +
Preference number: 6 (lower is better)
Translates to: APDSTRNLHTWT*LQEAAQCNGVH
Trigger: ATGGACGCCATTGCATTGTGCTGCCTCCTGCAACAATGTCCAAGTGTGTAAGTTCCTGGTGGAGTCTGGAGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 90 bp CATAGCAAACACAGCTGCTCCAGACTCCACCAGGAACTTACACACTaGGACATTGTTGCAGGAGGCAGCACAATGCAATGGCGTCCATCC +
Preference number: 6 (lower is better)
Translates to: HSKHSCSRLHQELTH*DIVAGGSTMQWRPS
Trigger: GGATGGACGCCATTGCATTGTGCTGCCTCCTGCAACAATGTCCAAGTGTGTAAGTTCCTGGTGGAGTCTGGAGCAGCTGTGTTTGCTATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 90 bp TCCCTCAGCTCACTGACGCGTTTATCCATGACGGCCACCTCTGAATaGCGCTTATTCAAACACTCCCTCTGTTGTTGCAGCTTGGCATTC +
Preference number: 6 (lower is better)
Translates to: SLSSLTRLSMTATSE*RLFKHSLCCCSLAF
Trigger: GAATGCCAAGCTGCAACAACAGAGGGAGTGTTTGAATAAGCGCAATTCAGAGGTGGCCGTCATGGATAAACGCGTCAGTGAGCTGAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 90 bp ACAGCTGCTCCAGACTCCACCAGGAACTTACACACTTGGACATTGTaGCAGGAGGCAGCACAATGCAATGGCGTCCATCCATCACTATCT +
Preference number: 6 (lower is better)
Translates to: TAAPDSTRNLHTWTL*QEAAQCNGVHPSLS
Trigger: AGATAGTGATGGATGGACGCCATTGCATTGTGCTGCCTCCTGCAACAATGTCCAAGTGTGTAAGTTCCTGGTGGAGTCTGGAGCAGCTGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 90 bp AACACAGCTGCTCCAGACTCCACCAGGAACTTACACACTTGGACATaGTTGCAGGAGGCAGCACAATGCAATGGCGTCCATCCATCACTA +
Preference number: 6 (lower is better)
Translates to: NTAAPDSTRNLHTWT*LQEAAQCNGVHPSL
Trigger: TAGTGATGGATGGACGCCATTGCATTGTGCTGCCTCCTGCAACAATGTCCAAGTGTGTAAGTTCCTGGTGGAGTCTGGAGCAGCTGTGTT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 72 bp AGTGGTCGAGGAATCCTTTCGTTTTCATGGCTCTCATaGACTGAAGAAACGGTCTCTGTCTCGGGCTCCGGA +
Preference number: 6 (lower is better)
Translates to: SGRGILSFSWLS*TEETVSVSGSG
Trigger: TCCGGAGCCCGAGACAGAGACCGTTTCTTCAGTTCATGAGAGCCATGAAAACGAAAGGATTCCTCGACCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp TATTCATCTGCTCGATCTCCTCCACGAGTTTTCCGTTaGTCAGCCTCTTTTGCTCCACATGGCCCTTTAGCG +
Preference number: 6 (lower is better)
Translates to: YSSARSPPRVFR*SASFAPHGPLA
Trigger: CGCTAAAGGGCCATGTGGAGCAAAAGAGGCTGAGCAACGGAAAACTCGTGGAGGAGATCGAGCAGATGAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 72 bp TGGCTTGAGCTTAGCCCCCACGGATGTAGCAGCTATTaGCAATTGCTGAGCATTTCCATCTGGCTTCATGTC +
Preference number: 6 (lower is better)
Translates to: WLELSPHGCSSY*QLLSISIWLHV
Trigger: GACATGAAGCCAGATGGAAATGCTCAGCAATTGCCAATAGCTGCTACATCCGTGGGGGCTAAGCTCAAGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS CCA 72 bp CTGGCTACAGGAGTAAATGTTCTCTGGGTGCTGTTGTaGATTCTGGGCAGCAGCTATCACAGGCTTGCCATA +
Preference number: 6 (lower is better)
Translates to: LATGVNVLWVLL*ILGSSYHRLAI
Trigger: TATGGCAAGCCTGTGATAGCTGCTGCCCAGAATCCACAACAGCACCCAGAGAACATTTACTCCTGTAGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS CAA 72 bp CTATTCATCTGCTCGATCTCCTCCACGAGTTTTCCGTaGCTCAGCCTCTTTTGCTCCACATGGCCCTTTAGC +
Preference number: 6 (lower is better)
Translates to: LFICSISSTSFP*LSLFCSTWPFS
Trigger: GCTAAAGGGCCATGTGGAGCAAAAGAGGCTGAGCAACGGAAAACTCGTGGAGGAGATCGAGCAGATGAATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 72 bp GAGCTTAGCCCCCACGGATGTAGCAGCTATTGGCAATaGCTGAGCATTTCCATCTGGCTTCATGTCAGAAGG +
Preference number: 6 (lower is better)
Translates to: ELSPHGCSSYWQ*LSISIWLHVRR
Trigger: CCTTCTGACATGAAGCCAGATGGAAATGCTCAGCAATTGCCAATAGCTGCTACATCCGTGGGGGCTAAGCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS CAA 90 bp GGACTGTTAACCCCATTCTCCTTCCTCCGATGCTCGCCGGGAACTTaGACACCATTTCTTTTTACACTTGGATCTTGGGATCTCGGTCCA +
Preference number: 6 (lower is better)
Translates to: GLLTPFSFLRCSPGT*TPFLFTLGSWDLGP
Trigger: TGGACCGAGATCCCAAGATCCAAGTGTAAAAAGAAATGGTGTCAAAGTTCCCGGCGAGCATCGGAGGAAGGAGAATGGGGTTAACAGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 72 bp CCCCATTCTCCTTCCTCCGATGCTCGCCGGGAACTTTaGCACCATTTCTTTTTACACTTGGATCTTGGGATC +
Preference number: 6 (lower is better)
Translates to: PHSPSSDARREL*HHFFLHLDLGI
Trigger: GATCCCAAGATCCAAGTGTAAAAAGAAATGGTGTCAAAGTTCCCGGCGAGCATCGGAGGAAGGAGAATGGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp ATCTCCTCCACGAGTTTTCCGTTGCTCAGCCTCTTTTaGTCCACATGGCCCTTTAGCGCTCTCACTTTCTTA +
Preference number: 6 (lower is better)
Translates to: ISSTSFPLLSLF*STWPFSALTFL
Trigger: TAAGAAAGTGAGAGCGCTAAAGGGCCATGTGGAGCAAAAGAGGCTGAGCAACGGAAAACTCGTGGAGGAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp TGGGGAGCCTCTGGGTTTGTTTCTTCTACGTTATTCTaGAGATTGGTACTGCTGTCTGTGACTCCCTCAGAC +
Preference number: 6 (lower is better)
Translates to: WGASGFVSSTLF*RLVLLSVTPSD
Trigger: GTCTGAGGGAGTCACAGACAGCAGTACCAATCTGCAGAATAACGTAGAAGAAACAAACCCAGAGGCTCCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp AGTCTGCATGTCACTGTAGGTCATAGCAAACACAGCTaGTCCAGACTCCACCAGGAACTTACACACTTGGAC +
Preference number: 6 (lower is better)
Translates to: SLHVTVGHSKHS*SRLHQELTHLD
Trigger: GTCCAAGTGTGTAAGTTCCTGGTGGAGTCTGGAGCAGCTGTGTTTGCTATGACCTACAGTGACATGCAGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 72 bp TGTAGCAGCTATTGGCAATTGCTGAGCATTTCCATCTaGCTTCATGTCAGAAGGCGACTGAGCCGTTTGTCC +
Preference number: 6 (lower is better)
Translates to: CSSYWQLLSISI*LHVRRRLSRLS
Trigger: GGACAAACGGCTCAGTCGCCTTCTGACATGAAGCCAGATGGAAATGCTCAGCAATTGCCAATAGCTGCTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117245.2
ENSMUST00000191626.2
CDS CAA 72 bp TCACTGACGCGTTTATCCATGACGGCCACCTCTGAATaGCGCTTATTCAAACACTCCCTCTGTTGTTGCAGC +
Preference number: 6 (lower is better)
Translates to: SLTRLSMTATSE*RLFKHSLCCCS
Trigger: GCTGCAACAACAGAGGGAGTGTTTGAATAAGCGCAATTCAGAGGTGGCCGTCATGGATAAACGCGTCAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 90 bp AAGTGGGGAGCCTCTGGGTTTGTTTCTTCTACGTTATTCTGCAGATaGGTACTGCTGTCTGTGACTCCCTCAGACACATACTCAAGGCCT +
Preference number: 6 (lower is better)
Translates to: KWGASGFVSSTLFCR*VLLSVTPSDTYSRP
Trigger: AGGCCTTGAGTATGTGTCTGAGGGAGTCACAGACAGCAGTACCAATCTGCAGAATAACGTAGAAGAAACAAACCCAGAGGCTCCCCACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 90 bp CTGAGCATTTCCATCTGGCTTCATGTCAGAAGGCGACTGAGCCGTTaGTCCAAAGTAAGGCAAATGAATCTGTTTTGGCTGAGCATCCCG +
Preference number: 6 (lower is better)
Translates to: LSISIWLHVRRRLSR*SKVRQMNLFWLSIP
Trigger: CGGGATGCTCAGCCAAAACAGATTCATTTGCCTTACTTTGGACAAACGGCTCAGTCGCCTTCTGACATGAAGCCAGATGGAAATGCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191626.2
CDS TCA 72 bp CTTCTACGTTATTCTGCAGATTGGTACTGCTGTCTGTaGCTCCCTCAGACACATACTCAAGGCCTGCAGAAG +
Preference number: 6 (lower is better)
Translates to: LLRYSADWYCCL*LPQTHTQGLQK
Trigger: CTTCTGCAGGCCTTGAGTATGTGTCTGAGGGAGTCACAGACAGCAGTACCAATCTGCAGAATAACGTAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS GCA 72 bp AGCCTAGGACTGTTAACCCCATTCTCCTTCCTCCGATaGTCGCCGGGAACTTTGACACCATTTCTTTTTACA +
Preference number: 6 (lower is better)
Translates to: SLGLLTPFSFLR*SPGTLTPFLFT
Trigger: TGTAAAAAGAAATGGTGTCAAAGTTCCCGGCGAGCATCGGAGGAAGGAGAATGGGGTTAACAGTCCTAGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 72 bp ACCCCATTCTCCTTCCTCCGATGCTCGCCGGGAACTTaGACACCATTTCTTTTTACACTTGGATCTTGGGAT +
Preference number: 6 (lower is better)
Translates to: TPFSFLRCSPGT*TPFLFTLGSWD
Trigger: ATCCCAAGATCCAAGTGTAAAAAGAAATGGTGTCAAAGTTCCCGGCGAGCATCGGAGGAAGGAGAATGGGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 90 bp TCCACATGTAAATATGGATTTGGGATTTCAACGGAGCTCTCTGGATaGACAGTCACTGAGCCTGGTGACTTAGATGGGTGTGAGGGGACT +
Preference number: 6 (lower is better)
Translates to: STCKYGFGISTELSG*TVTEPGDLDGCEGT
Trigger: AGTCCCCTCACACCCATCTAAGTCACCAGGCTCAGTGACTGTCAATCCAGAGAGCTCCGTTGAAATCCCAAATCCATATTTACATGTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 72 bp TCCATCTGGCTTCATGTCAGAAGGCGACTGAGCCGTTaGTCCAAAGTAAGGCAAATGAATCTGTTTTGGCTG +
Preference number: 6 (lower is better)
Translates to: SIWLHVRRRLSR*SKVRQMNLFWL
Trigger: CAGCCAAAACAGATTCATTTGCCTTACTTTGGACAAACGGCTCAGTCGCCTTCTGACATGAAGCCAGATGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191626.2
CDS CAA 90 bp ACCTCTGAATTGCGCTTATTCAAACACTCCCTCTGTTGTTGCAGCTaGGCATTCTGCTCTTGGTTCAGTTTGTTTCTTAACTGCAGCTCC +
Preference number: 6 (lower is better)
Translates to: TSELRLFKHSLCCCS*AFCSWFSLFLNCSS
Trigger: GGAGCTGCAGTTAAGAAACAAACTGAACCAAGAGCAGAATGCCAAGCTGCAACAACAGAGGGAGTGTTTGAATAAGCGCAATTCAGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 90 bp CTGAGCATTTCCATCTGGCTTCATGTCAGAAGGCGACTGAGCCGTTaGTCCAAAGTAAGGCAAATGAATCTGTTTTGGCTTTGTAGGAAC +
Preference number: 6 (lower is better)
Translates to: LSISIWLHVRRRLSR*SKVRQMNLFWLCRN
Trigger: GTTCCTACAAAGCCAAAACAGATTCATTTGCCTTACTTTGGACAAACGGCTCAGTCGCCTTCTGACATGAAGCCAGATGGAAATGCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS TCA 72 bp TTCACAATTTCTGTGTGGCCTGCACACACAGCATTATaGAGAGCTGTGATGCCCTCATCATTTGGTAGGCTT +
Preference number: 6 (lower is better)
Translates to: FTISVWPAHTAL*RAVMPSSFGRL
Trigger: AAGCCTACCAAATGATGAGGGCATCACAGCTCTTCATAATGCTGTGTGTGCAGGCCACACAGAAATTGTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 72 bp TCCATCTGGCTTCATGTCAGAAGGCGACTGAGCCGTTaGTCCAAAGTAAGGCAAATGAATCTGTTTTGGCTT +
Preference number: 6 (lower is better)
Translates to: SIWLHVRRRLSR*SKVRQMNLFWL
Trigger: AAGCCAAAACAGATTCATTTGCCTTACTTTGGACAAACGGCTCAGTCGCCTTCTGACATGAAGCCAGATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 72 bp AAATATGGATTTGGGATTTCAACGGAGCTCTCTGGATaGACAGTCACTGAGCCTGGTGACTTAGATGGGTGT +
Preference number: 6 (lower is better)
Translates to: KYGFGISTELSG*TVTEPGDLDGC
Trigger: ACACCCATCTAAGTCACCAGGCTCAGTGACTGTCAATCCAGAGAGCTCCGTTGAAATCCCAAATCCATATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CAA 72 bp CTAGGTACACTTCAAGTAAGTGGGGAGCCTCTGGGTTaGTTTCTTCTACGTTATTCTGCAGATTGGTACTGC +
Preference number: 6 (lower is better)
Translates to: LGTLQVSGEPLG*FLLRYSADWYC
Trigger: GCAGTACCAATCTGCAGAATAACGTAGAAGAAACAAACCCAGAGGCTCCCCACTTACTTGAAGTGTACCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2
CDS CCA 72 bp TATGGTGGTCCTCTGATACAAAAGTTTCTGAATATTTaGCCCATTAGGGCCTTCTGGTTCTGTAATGGAGCT +
Preference number: 6 (lower is better)
Translates to: YGGPLIQKFLNI*PIRAFWFCNGA
Trigger: AGCTCCATTACAGAACCAGAAGGCCCTAATGGGCCAAATATTCAGAAACTTTTGTATCAGAGGACCACCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117245.2