Pregenerated sensors for TRNT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000013736Ensembl transcript IDs: ENSMUST00000057578.16, ENSMUST00000113247.8, ENSMUST00000113248.4, ENSMUST00000113249.8, ENSMUST00000204782.2
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCCCTGTGAAAGCTGGGGCGGCTCCTCTGAAGACAGAAAAGAGATaGACCCTCGAGTTTATCTATCCAAAGGCAGTCAGGTCTGTGTCA | + |
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Preference number: 1 (lower is better) Translates to: GPVKAGAAPLKTEKR*TLEFIYPKAVRSVS Trigger: TGACACAGACCTGACTGCCTTTGGATAGATAAACTCGAGGGTGCATCTCTTTTCTGTCTTCAGAGGAGCCGCCCCAGCTTTCACAGGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR TCA 90 bp | TGTGGTACAGTGACCTCAAACTCACTGTGTAGCCAAGGCTGGCATTaGACTCATGGCCTTCATGCCTTAGGATCCCTCAGTGTTAGGATT | + |
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Preference number: 1 (lower is better) Translates to: CGTVTSNSLCSQGWH*THGLHALGSLSVRI Trigger: AATCCTAACACTGAGGGATCCTAAGGCATGAAGGCCATGAGTTCAATGCCAGCCTTGGCTACACAGTGAGTTTGAGGTCACTGTACCACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR TCA 90 bp | CCTCGAGTTTATCTATCCAAAGGCAGTCAGGTCTGTGTCAGGATGTaGTCCTGGCTCTCCTGTGTTCACTGTGGTTCACTTTTGAAAACA | + |
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Preference number: 1 (lower is better) Translates to: PRVYLSKGSQVCVRM*SWLSCVHCGSLLKT Trigger: TGTTTTCAAAAGTGAACCACAGTGAACACAGGAGAGCCAGGATCACATCCTGACACAGACCTGACTGCCTTTGGATAGATAAACTCGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR TCA 90 bp | ACTTCAGCTAGTTCTGCTACACGGGACCAAAATTGGGTGGGTCTCTaGACATGTGCTGATGCTGTGAAGCTTAACACTTTGATGAATTCA | + |
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Preference number: 1 (lower is better) Translates to: TSASSATRDQNWVGL*TCADAVKLNTLMNS Trigger: TGAATTCATCAAAGTGTTAAGCTTCACAGCATCAGCACATGTTCAGAGACCCACCCAATTTTGGTCCCGTGTAGCAGAACTAGCTGAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057578.16 |
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| 3UTR-3UTR TCA 90 bp | TACAGGCCCTGTGAAAGCTGGGGCGGCTCCTCTGAAGACAGAAAAGAGATGCACAGCCAAGGCTGGCATTaGACTCATGGCCTTCATGCC | + |
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Preference number: 2 (lower is better) Translates to: YRPCESWGGSSEDRKEMHSQGWH*THGLHA Trigger: GGCATGAAGGCCATGAGTTCAATGCCAGCCTTGGCT...GTGCATCTCTTTTCTGTCTTCAGAGGAGCCGCCCCAGCTTTCACAGGGCCTGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR-3UTR TCA 90 bp | GCAGTCAGGTCTGTGTCAGGATGTGATCCTGGCTCTCCTGTGTTCACTGTGGTTTCGACTCTAGGTCCTTaGGGTAGAGCACAGCTTAAG | + |
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Preference number: 2 (lower is better) Translates to: AVRSVSGCDPGSPVFTVVSTLGP*GRAQLK Trigger: CTTAAGCTGTGCTCTACCTCAAGGACCTAGAGTCGA...AACCACAGTGAACACAGGAGAGCCAGGATCACATCCTGACACAGACCTGACTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR-3UTR TCA 90 bp | TACAGGCCCTGTGAAAGCTGGGGCGGCTCCTCTGAAGACAGAAAAGAGATGCACGTACAAGGACACAGATaGCATTCTCATCACTGCTGC | + |
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Preference number: 2 (lower is better) Translates to: YRPCESWGGSSEDRKEMHVQGHR*HSHHCC Trigger: GCAGCAGTGATGAGAATGTCATCTGTGTCCTTGTAC...GTGCATCTCTTTTCTGTCTTCAGAGGAGCCGCCCCAGCTTTCACAGGGCCTGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR-3UTR TCA 90 bp | TACAGGCCCTGTGAAAGCTGGGGCGGCTCCTCTGAAGACAGAAAAGAGATGCACACTGTGGTTCACTTTTaGAAACAAACAGCCAAGAAA | + |
|
Preference number: 2 (lower is better) Translates to: YRPCESWGGSSEDRKEMHTVVHF*KQTAKK Trigger: TTTCTTGGCTGTTTGTTTTCAAAAGTGAACCACAGT...GTGCATCTCTTTTCTGTCTTCAGAGGAGCCGCCCCAGCTTTCACAGGGCCTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR-3UTR GCA 90 bp | ACACAGATGACATTCTCATCACTGCTGCAAAGTAGAGGGACTACAGATAACCAACCACACAACTATCACTaGATTTCACACTTAGCCAGT | + |
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Preference number: 2 (lower is better) Translates to: TQMTFSSLLQSRGTTDNQPHNYH*ISHLAS Trigger: ACTGGCTAAGTGTGAAATGCAGTGATAGTTGTGTGG...TTGGTTATCTGTAGTCCCTCTACTTTGCAGCAGTGATGAGAATGTCATCTGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR-3UTR TCA 90 bp | TGCTGCAAAGTAGAGGGACTACAGATAACCAAAAAGTTCACAAGGGGATTGAATAGTATCGGAATACTCTaGTTTGTTGTACCACTTGCT | + |
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Preference number: 2 (lower is better) Translates to: CCKVEGLQITKKFTRGLNSIGIL*FVVPLA Trigger: AGCAAGTGGTACAACAAATCAGAGTATTCCGATACT...ATTCAATCCCCTTGTGAACTTTTTGGTTATCTGTAGTCCCTCTACTTTGCAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR TCA 72 bp | GTGACCTCAAACTCACTGTGTAGCCAAGGCTGGCATTaGACTCATGGCCTTCATGCCTTAGGATCCCTCAGT | + |
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Preference number: 3 (lower is better) Translates to: VTSNSLCSQGWH*THGLHALGSLS Trigger: ACTGAGGGATCCTAAGGCATGAAGGCCATGAGTTCAATGCCAGCCTTGGCTACACAGTGAGTTTGAGGTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR GCA 72 bp | AAAGCTGGGGCGGCTCCTCTGAAGACAGAAAAGAGATaGACCCTCGAGTTTATCTATCCAAAGGCAGTCAGG | + |
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Preference number: 3 (lower is better) Translates to: KAGAAPLKTEKR*TLEFIYPKAVR Trigger: CCTGACTGCCTTTGGATAGATAAACTCGAGGGTGCATCTCTTTTCTGTCTTCAGAGGAGCCGCCCCAGCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR-3UTR CAA 90 bp | TACAGGCCCTGTGAAAGCTGGGGCGGCTCCTCTGAAGACAGAAAAGAGATGCACTTTCTGTGTCATTTTTaGGTGAGGCACCGAATATGT | + |
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Preference number: 3 (lower is better) Translates to: YRPCESWGGSSEDRKEMHFLCHF*VRHRIC Trigger: ACATATTCGGTGCCTCACCAAAAAATGACACAGAAA...GTGCATCTCTTTTCTGTCTTCAGAGGAGCCGCCCCAGCTTTCACAGGGCCTGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR TCA 72 bp | TATCTATCCAAAGGCAGTCAGGTCTGTGTCAGGATGTaGTCCTGGCTCTCCTGTGTTCACTGTGGTTCACTT | + |
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Preference number: 3 (lower is better) Translates to: YLSKGSQVCVRM*SWLSCVHCGSL Trigger: AAGTGAACCACAGTGAACACAGGAGAGCCAGGATCACATCCTGACACAGACCTGACTGCCTTTGGATAGATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR-3UTR CAA 90 bp | TACAGGCCCTGTGAAAGCTGGGGCGGCTCCTCTGAAGACAGAAAAGAGATGCACCTAAACATGATAGCTTaGAGGGAAGAGATGTGTTTA | + |
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Preference number: 3 (lower is better) Translates to: YRPCESWGGSSEDRKEMHLNMIA*REEMCL Trigger: TAAACACATCTCTTCCCTCAAAGCTATCATGTTTAG...GTGCATCTCTTTTCTGTCTTCAGAGGAGCCGCCCCAGCTTTCACAGGGCCTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR-3UTR CAA 90 bp | ACACAGATGACATTCTCATCACTGCTGCAAAGTAGAGGGACTACAGATAACCAAGAATACTCTGATTTGTaGTACCACTTGCTAGCACTC | + |
|
Preference number: 3 (lower is better) Translates to: TQMTFSSLLQSRGTTDNQEYSDL*YHLLAL Trigger: GAGTGCTAGCAAGTGGTACAACAAATCAGAGTATTC...TTGGTTATCTGTAGTCCCTCTACTTTGCAGCAGTGATGAGAATGTCATCTGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR-3UTR CAA 90 bp | ACAAGGACACAGATGACATTCTCATCACTGCTGCAAAGTAGAGGGACTACAGATAAGTTCACAAGGGGATaGAATGCTTTTAGCCTAAAC | + |
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Preference number: 3 (lower is better) Translates to: TRTQMTFSSLLQSRGTTDKFTRG*NAFSLN Trigger: GTTTAGGCTAAAAGCATTCAATCCCCTTGTGAACTT...ATCTGTAGTCCCTCTACTTTGCAGCAGTGATGAGAATGTCATCTGTGTCCTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| 3UTR TCA 72 bp | AGCCAGTTTCTCCAACTTTTAAGTATCGGAATACTCTaGTTTGTTGTACCACTTGCTAGCACTCTCTTTCTG | + |
|
Preference number: 3 (lower is better) Translates to: SQFLQLLSIGIL*FVVPLASTLFL Trigger: CAGAAAGAGAGTGCTAGCAAGTGGTACAACAAATCAGAGTATTCCGATACTTAAAAGTTGGAGAAACTGGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| CDS-3UTR TCA 90 bp | GCAGTCAGGTCTGTGTCAGGATGTGATCCTGGCTCTCCTGTGTTCACTGTGGTTAACATCTCCTTCATCTaGGTAGGGGTGGCAGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: AVRSVSGCDPGSPVFTVVNISFI*VGVAVV Trigger: CACCACTGCCACCCCTACTCAGATGAAGGAGATGTT...AACCACAGTGAACACAGGAGAGCCAGGATCACATCCTGACACAGACCTGACTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| CDS-3UTR CCA 90 bp | TACAGGCCCTGTGAAAGCTGGGGCGGCTCCTCTGAAGACAGAAAAGAGATGCACTCGGTGAAAAGGGACTaGAATTCTGGGGACTGCAAC | + |
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Preference number: 4 (lower is better) Translates to: YRPCESWGGSSEDRKEMHSVKRD*NSGDCN Trigger: GTTGCAGTCCCCAGAATTCCAGTCCCTTTTCACCGA...GTGCATCTCTTTTCTGTCTTCAGAGGAGCCGCCCCAGCTTTCACAGGGCCTGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| CDS-3UTR TCA 90 bp | GCAGTCAGGTCTGTGTCAGGATGTGATCCTGGCTCTCCTGTGTTCACTGTGGTTCATGCGAATGCCAGCTaGCTGGAACATCTCCTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: AVRSVSGCDPGSPVFTVVHANAS*LEHLLH Trigger: ATGAAGGAGATGTTCCAGTCAGCTGGCATTCGCATG...AACCACAGTGAACACAGGAGAGCCAGGATCACATCCTGACACAGACCTGACTGC 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| CDS-3UTR TCA 90 bp | TACAGGCCCTGTGAAAGCTGGGGCGGCTCCTCTGAAGACAGAAAAGAGATGCACTCTCTCCTTTGTTGTTaGTCATGCGAATGCCAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: YRPCESWGGSSEDRKEMHSLLCC*SCECQL Trigger: CAGCTGGCATTCGCATGATCAACAACAAAGGAGAGA...GTGCATCTCTTTTCTGTCTTCAGAGGAGCCGCCCCAGCTTTCACAGGGCCTGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| CDS-3UTR GCA 90 bp | GCGTCCAACCTGAATCTGATAGGCCGGCCTTCTACAGTGCACAGCTGGTTTCCCTCTTTGAGAAGACCATaGTCTCCTTGGTACTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: ASNLNLIGRPSTVHSWFPSLRRP*SPWYFS Trigger: GCTGAAGTACCAAGGAGAGCATGGTCTTCTCAAAGA...GGGAAACCAGCTGTGCACTGTAGAAGGCCGGCCTATCAGATTCAGGTTGGACGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR CCA 90 bp | GAATCTGATAGGCCGGCCTTCTACAGTGCACAGCTGGTTTCCCGGGTAATACAGGCTTCTAGAGTCTCATaGTCATGGTCACCAGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: ESDRPAFYSAQLVSRVIQASRVS*SWSPGL Trigger: CAGACCTGGTGACCATGACCATGAGACTCTAGAAGC...CTGTATTACCCGGGAAACCAGCTGTGCACTGTAGAAGGCCGGCCTATCAGATTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR TCA 90 bp | AGGCCGGCCTTCTACAGTGCACAGCTGGTTTCCCGGGTAATACAGCTGTTTACTTCTGCCAGTCAGTTGTaGATTCTACCTCTGCATGTC | + |
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Preference number: 4 (lower is better) Translates to: RPAFYSAQLVSRVIQLFTSASQL*ILPLHV Trigger: GACATGCAGAGGTAGAATTCACAACTGACTGGCAGA...AGTAAACAGCTGTATTACCCGGGAAACCAGCTGTGCACTGTAGAAGGCCGGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR TCA 90 bp | AGGCCGGCCTTCTACAGTGCACAGCTGGTTTCCCGGGTAATACAGCTGTTTACTACTGCTGCATCTCTTTaGGAAGACCATGCTCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: RPAFYSAQLVSRVIQLFTTAASL*EDHALL Trigger: AAGGAGAGCATGGTCTTCTCAAAGAGATGCAGCAGT...AGTAAACAGCTGTATTACCCGGGAAACCAGCTGTGCACTGTAGAAGGCCGGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR CCA 90 bp | AGGCCGGCCTTCTACAGTGCACAGCTGGTTTCCCGGGTAATACAGCTGTTTACTAGACCATGCTCTCCTTaGTACTTCAGCAGCTCACAA | + |
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Preference number: 4 (lower is better) Translates to: RPAFYSAQLVSRVIQLFTRPCSP*YFSSSQ Trigger: TTGTGAGCTGCTGAAGTACCAAGGAGAGCATGGTCT...AGTAAACAGCTGTATTACCCGGGAAACCAGCTGTGCACTGTAGAAGGCCGGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR TCA 90 bp | GAATCTGATAGGCCGGCCTTCTACAGTGCACAGCTGGTTTCCCGGGTAATACAGCCCAATTTCCTTCCCTaGAGAAATACCCACTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: ESDRPAFYSAQLVSRVIQPNFLP*RNTHFP Trigger: AGGAAAGTGGGTATTTCTTCAGGGAAGGAAATTGGG...CTGTATTACCCGGGAAACCAGCTGTGCACTGTAGAAGGCCGGCCTATCAGATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR TCA 90 bp | CTGACTGTGTATAAAGCGTCCAACCTGAATCTGATAGGCCGGCCTTCTACAGTGTCTCTCCTTTGTTGTTaGTCATGCGAATGCCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: LTVYKASNLNLIGRPSTVSLLCC*SCECQL Trigger: CAGCTGGCATTCGCATGATCAACAACAAAGGAGAGA...CACTGTAGAAGGCCGGCCTATCAGATTCAGGTTGGACGCTTTATACACAGTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR TCA 90 bp | TACAGGCCCTGTGAAAGCTGGGGCGGCTCCTCTGAAGACAGAAAAGAGATGCACTCAAAATTTTCTTCATaGAGCCTGGCAGTGATAGTC | + |
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Preference number: 4 (lower is better) Translates to: YRPCESWGGSSEDRKEMHSKFSS*SLAVIV Trigger: GACTATCACTGCCAGGCTTCATGAAGAAAATTTTGA...GTGCATCTCTTTTCTGTCTTCAGAGGAGCCGCCCCAGCTTTCACAGGGCCTGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| CDS-3UTR TCA 90 bp | GCACAGCTGGTTTCCCGGGTAATACAGCTGTTTACTTTTCTTGTTGACTCTTCAAACATCTCCTTCATCTaGGTAGGGGTGGCAGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: AQLVSRVIQLFTFLVDSSNISFI*VGVAVV Trigger: CACCACTGCCACCCCTACTCAGATGAAGGAGATGTT...TGAAGAGTCAACAAGAAAAGTAAACAGCTGTATTACCCGGGAAACCAGCTGTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR GCA 90 bp | TACAGGCCCTGTGAAAGCTGGGGCGGCTCCTCTGAAGACAGAAAAGAGATGCACCTGAATTCTCTGTTTTaGATGTCCAACAAATCGAAC | + |
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Preference number: 4 (lower is better) Translates to: YRPCESWGGSSEDRKEMHLNSLF*MSNKSN Trigger: GTTCGATTTGTTGGACATGCAAAACAGAGAATTCAG...GTGCATCTCTTTTCTGTCTTCAGAGGAGCCGCCCCAGCTTTCACAGGGCCTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| CDS-3UTR TCA 90 bp | TTCTACAGTGCACAGCTGGTTTCCCGGGTAATACAGCTGTTTACTTTTCTTGTTAACATCTCCTTCATCTaGGTAGGGGTGGCAGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: FYSAQLVSRVIQLFTFLVNISFI*VGVAVV Trigger: CACCACTGCCACCCCTACTCAGATGAAGGAGATGTT...AACAAGAAAAGTAAACAGCTGTATTACCCGGGAAACCAGCTGTGCACTGTAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR GCA 90 bp | ACAAGGGGATTGAATGCTTTTAGCCTAAACATGATAGCTTTGAGGGAAGAGATGCTACACCTCAGGACCTaGCTGTGCCAAGGATACAGG | + |
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Preference number: 4 (lower is better) Translates to: TRGLNAFSLNMIALREEMLHLRT*LCQGYR Trigger: CCTGTATCCTTGGCACAGGCAGGTCCTGAGGTGTAG...CATCTCTTCCCTCAAAGCTATCATGTTTAGGCTAAAAGCATTCAATCCCCTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| CDS-3UTR GCA 90 bp | CAGCTGGTTTCCCGGGTAATACAGCTGTTTACTTTTCTTGTTGACTCTTCATTTCTACACCTCAGGACCTaGCTGTGCCAAGGATACAGG | + |
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Preference number: 4 (lower is better) Translates to: QLVSRVIQLFTFLVDSSFLHLRT*LCQGYR Trigger: CCTGTATCCTTGGCACAGGCAGGTCCTGAGGTGTAG...AAATGAAGAGTCAACAAGAAAAGTAAACAGCTGTATTACCCGGGAAACCAGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR CCA 90 bp | GCACAGCTGGTTTCCCGGGTAATACAGCTGTTTACTTTTCTTGTTGACTCTTCAGCTTCTAGAGTCTCATaGTCATGGTCACCAGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: AQLVSRVIQLFTFLVDSSASRVS*SWSPGL Trigger: CAGACCTGGTGACCATGACCATGAGACTCTAGAAGC...TGAAGAGTCAACAAGAAAAGTAAACAGCTGTATTACCCGGGAAACCAGCTGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR TCA 90 bp | TATGTACATGAGACACTGACTGTGTATAAAGCGTCCAACCTGAATCTGATAGGCGCAGGTAAACCTATGTaGGGAGCCACACCAAGATCA | + |
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Preference number: 4 (lower is better) Translates to: YVHETLTVYKASNLNLIGAGKPM*GATPRS Trigger: TGATCTTGGTGTGGCTCCTCACATAGGTTTACCTGC...GCCTATCAGATTCAGGTTGGACGCTTTATACACAGTCAGTGTCTCATGTACATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR CCA 90 bp | CTGACTGTGTATAAAGCGTCCAACCTGAATCTGATAGGCCGGCCTTCTACAGTGATCAGGTGGATCAAATaGTTTACATGGTCACCAGTA | + |
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Preference number: 4 (lower is better) Translates to: LTVYKASNLNLIGRPSTVIRWIK*FTWSPV Trigger: TACTGGTGACCATGTAAACCATTTGATCCACCTGAT...CACTGTAGAAGGCCGGCCTATCAGATTCAGGTTGGACGCTTTATACACAGTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR TCA 90 bp | TTCTACAGTGCACAGCTGGTTTCCCGGGTAATACAGCTGTTTACTTTTCTTGTTTCTCTCCTTTGTTGTTaGTCATGCGAATGCCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: FYSAQLVSRVIQLFTFLVSLLCC*SCECQL Trigger: CAGCTGGCATTCGCATGATCAACAACAAAGGAGAGA...AACAAGAAAAGTAAACAGCTGTATTACCCGGGAAACCAGCTGTGCACTGTAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR TCA 90 bp | GCACAGCTGGTTTCCCGGGTAATACAGCTGTTTACTTTTCTTGTTGACTCTTCACCCAATTTCCTTCCCTaGAGAAATACCCACTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: AQLVSRVIQLFTFLVDSSPNFLP*RNTHFP Trigger: AGGAAAGTGGGTATTTCTTCAGGGAAGGAAATTGGG...TGAAGAGTCAACAAGAAAAGTAAACAGCTGTATTACCCGGGAAACCAGCTGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR GCA 90 bp | GCAACAGAATATCTGCCAACCTCCTGTATACTTGTCTTACATTTTACACAAAGTCTACACCTCAGGACCTaGCTGTGCCAAGGATACAGG | + |
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Preference number: 4 (lower is better) Translates to: ATEYLPTSCILVLHFTQSLHLRT*LCQGYR Trigger: CCTGTATCCTTGGCACAGGCAGGTCCTGAGGTGTAG...ACTTTGTGTAAAATGTAAGACAAGTATACAGGAGGTTGGCAGATATTCTGTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057578.16 |
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| CDS-3UTR CCA 90 bp | GTGTATAAAGCGTCCAACCTGAATCTGATAGGCCGGCCTTCTACAGTGCACAGCTCTATCACAAAGTCTTaGTATGGTTTCAATGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: VYKASNLNLIGRPSTVHSSITKS*YGFNGS Trigger: AGAACCATTGAAACCATACCAAGACTTTGTGATAGA...GCTGTGCACTGTAGAAGGCCGGCCTATCAGATTCAGGTTGGACGCTTTATACAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| 3UTR CAA 72 bp | GTACCACTTGCTAGCACTCTCTTTCTGTGTCATTTTTaGGTGAGGCACCGAATATGTTCCAGAACATCGACT | + |
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Preference number: 4 (lower is better) Translates to: VPLASTLFLCHF*VRHRICSRTST Trigger: AGTCGATGTTCTGGAACATATTCGGTGCCTCACCAAAAAATGACACAGAAAGAGAGTGCTAGCAAGTGGTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| CDS-3UTR TCA 90 bp | ACAAGGGGATTGAATGCTTTTAGCCTAAACATGATAGCTTTGAGGGAAGAGATGTCTGCCAGTCAGTTGTaGATTCTACCTCTGCATGTC | + |
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Preference number: 4 (lower is better) Translates to: TRGLNAFSLNMIALREEMSASQL*ILPLHV Trigger: GACATGCAGAGGTAGAATTCACAACTGACTGGCAGA...CATCTCTTCCCTCAAAGCTATCATGTTTAGGCTAAAAGCATTCAATCCCCTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| CDS-3UTR TCA 90 bp | TTTGTCTGTAGTTTATCCTTATGTGGTCCAATGGCAGCATATGTGAATCCTCATGCAGGTAAACCTATGTaGGGAGCCACACCAAGATCA | + |
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Preference number: 4 (lower is better) Translates to: FVCSLSLCGPMAAYVNPHAGKPM*GATPRS Trigger: TGATCTTGGTGTGGCTCCTCACATAGGTTTACCTGC...ATGAGGATTCACATATGCTGCCATTGGACCACATAAGGATAAACTACAGACAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR CCA 90 bp | CTTCATTTAGTTTTAGATGAACTTTCAAGACTTCCCCTGTTTCATACAGGGCTCTCGGTGAAAAGGGACTaGAATTCTGGGGACTGCAAC | + |
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Preference number: 4 (lower is better) Translates to: LHLVLDELSRLPLFHTGLSVKRD*NSGDCN Trigger: GTTGCAGTCCCCAGAATTCCAGTCCCTTTTCACCGA...GAGCCCTGTATGAAACAGGGGAAGTCTTGAAAGTTCATCTAAAACTAAATGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR CCA 90 bp | AGTTTATCCTTATGTGGTCCAATGGCAGCATATGTGAATCCTCATGGATATGTATCGGTGAAAAGGGACTaGAATTCTGGGGACTGCAAC | + |
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Preference number: 4 (lower is better) Translates to: SLSLCGPMAAYVNPHGYVSVKRD*NSGDCN Trigger: GTTGCAGTCCCCAGAATTCCAGTCCCTTTTCACCGA...TACATATCCATGAGGATTCACATATGCTGCCATTGGACCACATAAGGATAAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR CCA 90 bp | CATTTAGTTTTAGATGAACTTTCAAGACTTCCCCTGTTTCATACAGGGCTCATCAGAGTCTCATGGTCATaGTCACCAGGTCTGTCGACA | + |
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Preference number: 4 (lower is better) Translates to: HLVLDELSRLPLFHTGLIRVSWS*SPGLST Trigger: TGTCGACAGACCTGGTGACCATGACCATGAGACTCT...GATGAGCCCTGTATGAAACAGGGGAAGTCTTGAAAGTTCATCTAAAACTAAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR CCA 90 bp | AGTTTATCCTTATGTGGTCCAATGGCAGCATATGTGAATCCTCATGGATATGTAAGAGTCTCATGGTCATaGTCACCAGGTCTGTCGACA | + |
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Preference number: 4 (lower is better) Translates to: SLSLCGPMAAYVNPHGYVRVSWS*SPGLST Trigger: TGTCGACAGACCTGGTGACCATGACCATGAGACTCT...TACATATCCATGAGGATTCACATATGCTGCCATTGGACCACATAAGGATAAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR TCA 90 bp | GCAACAGAATATCTGCCAACCTCCTGTATACTTGTCTTACATTTTACACAAAGTCATGCGAATGCCAGCTaGCTGGAACATCTCCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: ATEYLPTSCILVLHFTQSHANAS*LEHLLH Trigger: ATGAAGGAGATGTTCCAGTCAGCTGGCATTCGCATG...ACTTTGTGTAAAATGTAAGACAAGTATACAGGAGGTTGGCAGATATTCTGTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057578.16 |
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| CDS-3UTR TCA 90 bp | TTATCCTTATGTGGTCCAATGGCAGCATATGTGAATCCTCATGGATATGTACATTCTGCCAGTCAGTTGTaGATTCTACCTCTGCATGTC | + |
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Preference number: 4 (lower is better) Translates to: LSLCGPMAAYVNPHGYVHSASQL*ILPLHV Trigger: GACATGCAGAGGTAGAATTCACAACTGACTGGCAGA...ATGTACATATCCATGAGGATTCACATATGCTGCCATTGGACCACATAAGGATAA 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR TCA 90 bp | CATTTAGTTTTAGATGAACTTTCAAGACTTCCCCTGTTTCATACAGGGCTCATCACTGCTGCATCTCTTTaGGAAGACCATGCTCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: HLVLDELSRLPLFHTGLITAASL*EDHALL Trigger: AAGGAGAGCATGGTCTTCTCAAAGAGATGCAGCAGT...GATGAGCCCTGTATGAAACAGGGGAAGTCTTGAAAGTTCATCTAAAACTAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR CCA 90 bp | TTTGTCTGTAGTTTATCCTTATGTGGTCCAATGGCAGCATATGTGAATCCTCATAGACCATGCTCTCCTTaGTACTTCAGCAGCTCACAA | + |
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Preference number: 4 (lower is better) Translates to: FVCSLSLCGPMAAYVNPHRPCSP*YFSSSQ Trigger: TTGTGAGCTGCTGAAGTACCAAGGAGAGCATGGTCT...ATGAGGATTCACATATGCTGCCATTGGACCACATAAGGATAAACTACAGACAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR GCA 90 bp | CATTATTTCTTTGTCTGTAGTTTATCCTTATGTGGTCCAATGGCAGCATATGTGTCTTTGAGAAGACCATaGTCTCCTTGGTACTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: HYFFVCSLSLCGPMAAYVSLRRP*SPWYFS Trigger: GCTGAAGTACCAAGGAGAGCATGGTCTTCTCAAAGA...CACATATGCTGCCATTGGACCACATAAGGATAAACTACAGACAAAGAAATAATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR TCA 90 bp | CTTCATTTAGTTTTAGATGAACTTTCAAGACTTCCCCTGTTTCATACAGGGCTCTCAAAATTTTCTTCATaGAGCCTGGCAGTGATAGTC | + |
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Preference number: 4 (lower is better) Translates to: LHLVLDELSRLPLFHTGLSKFSS*SLAVIV Trigger: GACTATCACTGCCAGGCTTCATGAAGAAAATTTTGA...GAGCCCTGTATGAAACAGGGGAAGTCTTGAAAGTTCATCTAAAACTAAATGAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| 3UTR CAA 72 bp | AGGGGATTGAATGCTTTTAGCCTAAACATGATAGCTTaGAGGGAAGAGATGTGTTTACCTTCAATACCAATG | + |
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Preference number: 4 (lower is better) Translates to: RGLNAFSLNMIA*REEMCLPSIPM Trigger: CATTGGTATTGAAGGTAAACACATCTCTTCCCTCAAAGCTATCATGTTTAGGCTAAAAGCATTCAATCCCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113247.8 |
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| CDS-3UTR TCA 90 bp | CATTATTTCTTTGTCTGTAGTTTATCCTTATGTGGTCCAATGGCAGCATATGTGTCAAAATTTTCTTCATaGAGCCTGGCAGTGATAGTC | + |
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Preference number: 4 (lower is better) Translates to: HYFFVCSLSLCGPMAAYVSKFSS*SLAVIV Trigger: GACTATCACTGCCAGGCTTCATGAAGAAAATTTTGA...CACATATGCTGCCATTGGACCACATAAGGATAAACTACAGACAAAGAAATAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR GCA 90 bp | CATTTAGTTTTAGATGAACTTTCAAGACTTCCCCTGTTTCATACAGGGCTCATCCTGAATTCTCTGTTTTaGATGTCCAACAAATCGAAC | + |
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Preference number: 4 (lower is better) Translates to: HLVLDELSRLPLFHTGLILNSLF*MSNKSN Trigger: GTTCGATTTGTTGGACATGCAAAACAGAGAATTCAG...GATGAGCCCTGTATGAAACAGGGGAAGTCTTGAAAGTTCATCTAAAACTAAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR CCA 90 bp | CATTATTTCTTTGTCTGTAGTTTATCCTTATGTGGTCCAATGGCAGCATATGTGATCAGGTGGATCAAATaGTTTACATGGTCACCAGTA | + |
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Preference number: 4 (lower is better) Translates to: HYFFVCSLSLCGPMAAYVIRWIK*FTWSPV Trigger: TACTGGTGACCATGTAAACCATTTGATCCACCTGAT...CACATATGCTGCCATTGGACCACATAAGGATAAACTACAGACAAAGAAATAATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR CCA 90 bp | AGTTTATCCTTATGTGGTCCAATGGCAGCATATGTGAATCCTCATGGATATGTATCTATCACAAAGTCTTaGTATGGTTTCAATGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: SLSLCGPMAAYVNPHGYVSITKS*YGFNGS Trigger: AGAACCATTGAAACCATACCAAGACTTTGTGATAGA...TACATATCCATGAGGATTCACATATGCTGCCATTGGACCACATAAGGATAAACT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS GCA 90 bp | CTGATGTCATGTCCACTCACAGGGAACGGCGGGACAGACCACTGCTaGATCTCTTTGAGAAGACCATGCTCTCCTTGGTACTTCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LMSCPLTGNGGTDHC*ISLRRPCSPWYFSS Trigger: GCTGCTGAAGTACCAAGGAGAGCATGGTCTTCTCAAAGAGATGCAGCAGTGGTCTGTCCCGCCGTTCCCTGTGAGTGGACATGACATCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057578.16 ENSMUST00000113248.4 ENSMUST00000113249.8 |
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| CDS GCA 90 bp | TTCCTGATGTCATGTCCACTCACAGGGAACGGCGGGACAGACCACTaGTGCATCTCTTTGAGAAGACCATGCTCTCCTTGGTACTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: FLMSCPLTGNGGTDH*CISLRRPCSPWYFS Trigger: GCTGAAGTACCAAGGAGAGCATGGTCTTCTCAAAGAGATGCAGCAGTGGTCTGTCCCGCCGTTCCCTGTGAGTGGACATGACATCAGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057578.16 ENSMUST00000113248.4 ENSMUST00000113249.8 |
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| CDS-3UTR CAA 90 bp | GCGTCCAACCTGAATCTGATAGGCCGGCCTTCTACAGTGCACAGCTGGTTTCCCTGGCATTTTCTGCAATaGCTTCTAGAGTCTCATGGT | + |
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Preference number: 5 (lower is better) Translates to: ASNLNLIGRPSTVHSWFPWHFLQ*LLESHG Trigger: ACCATGAGACTCTAGAAGCAATTGCAGAAAATGCCA...GGGAAACCAGCTGTGCACTGTAGAAGGCCGGCCTATCAGATTCAGGTTGGACGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR CAA 90 bp | GTGTATAAAGCGTCCAACCTGAATCTGATAGGCCGGCCTTCTACAGTGCACAGCTGGCATTTTCTGCAATaGCTTCTAGAGTCTCATGGT | + |
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Preference number: 5 (lower is better) Translates to: VYKASNLNLIGRPSTVHSWHFLQ*LLESHG Trigger: ACCATGAGACTCTAGAAGCAATTGCAGAAAATGCCA...GCTGTGCACTGTAGAAGGCCGGCCTATCAGATTCAGGTTGGACGCTTTATACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR CAA 90 bp | GCACAGCTGGTTTCCCGGGTAATACAGCTGTTTACTTTTCTTGTTGACTCTTCAAAGACCATGCTCTCCTaGGTACTTCAGCAGCTCACA | + |
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Preference number: 5 (lower is better) Translates to: AQLVSRVIQLFTFLVDSSKTMLS*VLQQLT Trigger: TGTGAGCTGCTGAAGTACCAAGGAGAGCATGGTCTT...TGAAGAGTCAACAAGAAAAGTAAACAGCTGTATTACCCGGGAAACCAGCTGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057578.16 ENSMUST00000113249.8 |
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| CDS-3UTR CAA 90 bp | TATATTTCCATATTCCCTTCTGTGGTTCCACTTTCCATATTTTCTCCAGTGCCTAAGACCATGCTCTCCTaGGTACTTCAGCAGCTCACA | + |
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Preference number: 5 (lower is better) Translates to: YISIFPSVVPLSIFSPVPKTMLS*VLQQLT Trigger: TGTGAGCTGCTGAAGTACCAAGGAGAGCATGGTCTT...AGGCACTGGAGAAAATATGGAAAGTGGAACCACAGAAGGGAATATGGAAATATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057578.16 |
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| CDS GCA 72 bp | TGTCCACTCACAGGGAACGGCGGGACAGACCACTGCTaGATCTCTTTGAGAAGACCATGCTCTCCTTGGTAC | + |
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Preference number: 6 (lower is better) Translates to: CPLTGNGGTDHC*ISLRRPCSPWY Trigger: GTACCAAGGAGAGCATGGTCTTCTCAAAGAGATGCAGCAGTGGTCTGTCCCGCCGTTCCCTGTGAGTGGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057578.16 ENSMUST00000113248.4 ENSMUST00000113249.8 |
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| CDS GCA 72 bp | TCATGTCCACTCACAGGGAACGGCGGGACAGACCACTaGTGCATCTCTTTGAGAAGACCATGCTCTCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: SCPLTGNGGTDH*CISLRRPCSPW Trigger: CCAAGGAGAGCATGGTCTTCTCAAAGAGATGCAGCAGTGGTCTGTCCCGCCGTTCCCTGTGAGTGGACATGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057578.16 ENSMUST00000113248.4 ENSMUST00000113249.8 |
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| CDS CAA 90 bp | CGGGACAGACCACTGCTGCATCTCTTTGAGAAGACCATGCTCTCCTaGGTACTTCAGCAGCTCACAAACACGGGCAGTTGCATCTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: RDRPLLHLFEKTMLS*VLQQLTNTGSCIWF Trigger: GAACCAGATGCAACTGCCCGTGTTTGTGAGCTGCTGAAGTACCAAGGAGAGCATGGTCTTCTCAAAGAGATGCAGCAGTGGTCTGTCCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057578.16 ENSMUST00000113248.4 ENSMUST00000113249.8 |
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| CDS TCA 72 bp | ATGCGAATGCCAGCTGACTGGAACATCTCCTTCATCTaGGTAGGGGTGGCAGTGGTGGCGAAATCCACATCT | + |
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Preference number: 6 (lower is better) Translates to: MRMPADWNISFI*VGVAVVAKSTS Trigger: AGATGTGGATTTCGCCACCACTGCCACCCCTACTCAGATGAAGGAGATGTTCCAGTCAGCTGGCATTCGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000057578.16 ENSMUST00000113247.8 ENSMUST00000113248.4 ENSMUST00000113249.8 ENSMUST00000204782.2 |
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| CDS CAA 72 bp | CCACTGCTGCATCTCTTTGAGAAGACCATGCTCTCCTaGGTACTTCAGCAGCTCACAAACACGGGCAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: PLLHLFEKTMLS*VLQQLTNTGSC Trigger: GCAACTGCCCGTGTTTGTGAGCTGCTGAAGTACCAAGGAGAGCATGGTCTTCTCAAAGAGATGCAGCAGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057578.16 ENSMUST00000113248.4 ENSMUST00000113249.8 |
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| CDS CCA 72 bp | GTACTTCAGCAGCTCACAAACACGGGCAGTTGCATCTaGTTCCCTAGAGTCTATCACAAAGTCTTGGTATGG | + |
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Preference number: 6 (lower is better) Translates to: VLQQLTNTGSCI*FPRVYHKVLVW Trigger: CCATACCAAGACTTTGTGATAGACTCTAGGGAACCAGATGCAACTGCCCGTGTTTGTGAGCTGCTGAAGTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000057578.16 ENSMUST00000113248.4 ENSMUST00000113249.8 |
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| CDS CAA 72 bp | AGCCTGGCAGTGATAGTCCCATGTTTCTCTCCTTTGTaGTTGATCATGCGAATGCCAGCTGACTGGAACATC | + |
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Preference number: 6 (lower is better) Translates to: SLAVIVPCFSPL*LIMRMPADWNI Trigger: GATGTTCCAGTCAGCTGGCATTCGCATGATCAACAACAAAGGAGAGAAACATGGGACTATCACTGCCAGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000057578.16 ENSMUST00000113247.8 ENSMUST00000113248.4 ENSMUST00000113249.8 ENSMUST00000204782.2 |
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