RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRNP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000056596

Ensembl transcript IDs: ENSMUST00000125541.2

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGGGAAGCAATGCAGAGTGGAGCAAGTTCCCAGGACCCAGACCCTTaGCACTGTAAGGGCTCCTGGGAGGAGGGCGCCGAGACTGGGTAC +
Preference number: 1 (lower is better)
Translates to: WEAMQSGASSQDPDP*HCKGSWEEGAETGY
Trigger: GTACCCAGTCTCGGCGCCCTCCTCCCAGGAGCCCTTACAGTGGCAAGGGTCTGGGTCCTGGGAACTTGCTCCACTCTGCATTGCTTCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
3UTR CCA 90 bp GGATACATCAAGAAGTGGCTTGCCTTTCTGCATGTAACTTGGCTTTaGAGGTTACTGCCACCTCTTCCTGAGAAAAGTGTCCCCCTAGGA +
Preference number: 1 (lower is better)
Translates to: GYIKKWLAFLHVTWL*RLLPPLPEKSVPLG
Trigger: TCCTAGGGGGACACTTTTCTCAGGAAGAGGTGGCAGTAACCTCCAAAGCCAAGTTACATGCAGAAAGGCAAGCCACTTCTTGATGTATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
3UTR CCA 90 bp CTATCAGGATACATCAAGAAGTGGCTTGCCTTTCTGCATGTAACTTaGCTTTGGAGGTTACTGCCACCTCTTCCTGAGAAAAGTGTCCCC +
Preference number: 1 (lower is better)
Translates to: LSGYIKKWLAFLHVT*LWRLLPPLPEKSVP
Trigger: GGGGACACTTTTCTCAGGAAGAGGTGGCAGTAACCTCCAAAGCCAAGTTACATGCAGAAAGGCAAGCCACTTCTTGATGTATCCTGATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
3UTR CCA 90 bp GGGAGTAAATGTGCCTCCTTCCCTCTATCAGGATACATCAAGAAGTaGCTTGCCTTTCTGCATGTAACTTGGCTTTGGAGGTTACTGCCA +
Preference number: 1 (lower is better)
Translates to: GSKCASFPLSGYIKK*LAFLHVTWLWRLLP
Trigger: TGGCAGTAACCTCCAAAGCCAAGTTACATGCAGAAAGGCAAGCCACTTCTTGATGTATCCTGATAGAGGGAAGGAGGCACATTTACTCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
3UTR-3UTR CCA 90 bp ATCAAGAAGTGGCTTGCCTTTCTGCATGTAACTTGGCTTTGGAGGTTACTGCCACTGTCCTCCCGCACCTaGAGACTCGCCTGCCTCGGG +
Preference number: 2 (lower is better)
Translates to: IKKWLAFLHVTWLWRLLPLSSRT*RLACLG
Trigger: CCCGAGGCAGGCGAGTCTCCAGGTGCGGGAGGACAG...TGGCAGTAACCTCCAAAGCCAAGTTACATGCAGAAAGGCAAGCCACTTCTTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
3UTR-3UTR GCA 90 bp TCCAGCTACACTGTGACTTGTGATGACAGGGACTCCGTGACGTGTCAGAATGAGGTGTATGGGAAGCAATaGAGAGTGGAGCAAGTTCCC +
Preference number: 2 (lower is better)
Translates to: SSYTVTCDDRDSVTCQNEVYGKQ*RVEQVP
Trigger: GGGAACTTGCTCCACTCTGCATTGCTTCCCATACAC...CTCATTCTGACACGTCACGGAGTCCCTGTCATCACAAGTCACAGTGTAGCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
3UTR-3UTR GCA 90 bp ACAGCCACTTTAGAGAAGCCTATATGTTCTGGGCGGTGTGGGAGTAAATGTGCCGGTATCCAGAGAAGGTaGGGAATGCAGAAGTCAGTC +
Preference number: 2 (lower is better)
Translates to: TATLEKPICSGRCGSKCAGIQRR*GMQKSV
Trigger: GACTGACTTCTGCATTCCGCACCTTCTCTGGATACC...GGCACATTTACTCCCACACCGCCCAGAACATATAGGCTTCTCTAAAGTGGCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
3UTR-3UTR GCA 90 bp TCTATCTTTAAGAAGAAATTCTTCTCTCAGTCACACTGGCAATGTTTGCTGCGGCAGGACCCAGACCCTTaGCACTGTAAGGGCTCCTGG +
Preference number: 2 (lower is better)
Translates to: SIFKKKFFSQSHWQCLLRQDPDP*HCKGSW
Trigger: CCAGGAGCCCTTACAGTGGCAAGGGTCTGGGTCCTG...CCGCAGCAAACATTGCCAGTGTGACTGAGAGAAGAATTTCTTCTTAAAGATAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
3UTR-3UTR GCA 90 bp CAGAATGAGGAGTCTATCTTTAAGAAGAAATTCTTCTCTCAGTCACACTGGCAAAGAGAAGGTGCGGAATaGAGAAGTCAGTCCAGACCC +
Preference number: 2 (lower is better)
Translates to: QNEESIFKKKFFSQSHWQREGAE*RSQSRP
Trigger: GGGTCTGGACTGACTTCTGCATTCCGCACCTTCTCT...TTGCCAGTGTGACTGAGAGAAGAATTTCTTCTTAAAGATAGACTCCTCATTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
3UTR CCA 72 bp CACCTGGATCCGTCCGTCCGTCTGTCCTCCCGCACCTaGAGACTCGCCTGCCTCGGGAAGCCAGGGGTCCGG +
Preference number: 3 (lower is better)
Translates to: HLDPSVRLSSRT*RLACLGKPGVR
Trigger: CCGGACCCCTGGCTTCCCGAGGCAGGCGAGTCTCCAGGTGCGGGAGGACAGACGGACGGACGGATCCAGGTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
3UTR CCA 72 bp CTCCGCGTAGATGACGCCGTCCATCTGGCCAGCACCTaGATCCGTCCGTCCGTCTGTCCTCCCGCACCTGGA +
Preference number: 3 (lower is better)
Translates to: LRVDDAVHLAST*IRPSVCPPAPG
Trigger: TCCAGGTGCGGGAGGACAGACGGACGGACGGATCCAGGTGCTGGCCAGATGGACGGCGTCATCTACGCGGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
3UTR GCA 72 bp ATGCAGAGTGGAGCAAGTTCCCAGGACCCAGACCCTTaGCACTGTAAGGGCTCCTGGGAGGAGGGCGCCGAG +
Preference number: 3 (lower is better)
Translates to: MQSGASSQDPDP*HCKGSWEEGAE
Trigger: CTCGGCGCCCTCCTCCCAGGAGCCCTTACAGTGGCAAGGGTCTGGGTCCTGGGAACTTGCTCCACTCTGCAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
3UTR GCA 72 bp CTTCCTGAAGGCGGGGTATCCAGAGAAGGTGCGGAATaGAGAAGTCAGTCCAGACCCATAGAGTGGAGCCTC +
Preference number: 3 (lower is better)
Translates to: LPEGGVSREGAE*RSQSRPIEWSL
Trigger: GAGGCTCCACTCTATGGGTCTGGACTGACTTCTGCATTCCGCACCTTCTCTGGATACCCCGCCTTCAGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
3UTR GCA 72 bp GTATCAGCAAAGGCAAATACAGTGTATGGGAAGCAATaGAGAGTGGAGCAAGTTCCCAGGACCCAGACCCTT +
Preference number: 3 (lower is better)
Translates to: VSAKANTVYGKQ*RVEQVPRTQTL
Trigger: AAGGGTCTGGGTCCTGGGAACTTGCTCCACTCTGCATTGCTTCCCATACACTGTATTTGCCTTTGCTGATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
3UTR CCA 72 bp TGTGCCTCCTTCCCTCTATCAGGATACATCAAGAAGTaGCTTGCCTTTCTGCATGTAACTTGGCTTTGGAGG +
Preference number: 3 (lower is better)
Translates to: CASFPLSGYIKK*LAFLHVTWLWR
Trigger: CCTCCAAAGCCAAGTTACATGCAGAAAGGCAAGCCACTTCTTGATGTATCCTGATAGAGGGAAGGAGGCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
3UTR CCA 72 bp AAGAAGTGGCTTGCCTTTCTGCATGTAACTTGGCTTTaGAGGTTACTGCCACCTCTTCCTGAGAAAAGTGTC +
Preference number: 3 (lower is better)
Translates to: KKWLAFLHVTWL*RLLPPLPEKSV
Trigger: GACACTTTTCTCAGGAAGAGGTGGCAGTAACCTCCAAAGCCAAGTTACATGCAGAAAGGCAAGCCACTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
CDS-3UTR GCA 90 bp GGCCAGCACCTGGATCCGTCCGTCCGTCTGTCCTCCCGCACCTGGAGACTCGCCGGGCGACCCCGGTTCTaGCGTCCCTTCCTGGGCCCC +
Preference number: 4 (lower is better)
Translates to: GQHLDPSVRLSSRTWRLAGRPRF*RPFLGP
Trigger: GGGGCCCAGGAAGGGACGGCAGAACCGGGGTCGCCC...GGCGAGTCTCCAGGTGCGGGAGGACAGACGGACGGACGGATCCAGGTGCTGGCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
CDS-3UTR GCA 90 bp TCCGTCCGTCCGTCTGTCCTCCCGCACCTGGAGACTCGCCTGCCTCGGGAAGCCGCCAAGAAGACTCGGTaGAGCTGCAGCACCCGGCTC +
Preference number: 4 (lower is better)
Translates to: SVRPSVLPHLETRLPREAAKKTR*SCSTRL
Trigger: GAGCCGGGTGCTGCAGCTGCACCGAGTCTTCTTGGC...GGCTTCCCGAGGCAGGCGAGTCTCCAGGTGCGGGAGGACAGACGGACGGACGGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
CDS-3UTR CCA 90 bp AATCTGAGAGCATCTCGGGCCTCTGTATCAGCAAAGGCAAATACAGTGTATGGGCCCTTCCTGGGCCCCTaGGCCGCAGGCGCTGATTCG +
Preference number: 4 (lower is better)
Translates to: NLRASRASVSAKANTVYGPFLGP*AAGADS
Trigger: CGAATCAGCGCCTGCGGCCCAGGGGCCCAGGAAGGG...CCCATACACTGTATTTGCCTTTGCTGATACAGAGGCCCGAGATGCTCTCAGATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
CDS-3UTR GCA 90 bp GTATCAGCAAAGGCAAATACAGTGTATGGGAAGCAATGCAGAGTGGAGCAAGTTAGGCTCTCGGCGCGATaGGCCAGGCGCAGCTCCGCA +
Preference number: 4 (lower is better)
Translates to: VSAKANTVYGKQCRVEQVRLSAR*ARRSSA
Trigger: TGCGGAGCTGCGCCTGGCGCATCGCGCCGAGAGCCT...AACTTGCTCCACTCTGCATTGCTTCCCATACACTGTATTTGCCTTTGCTGATAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
CDS-3UTR CCA 90 bp GTATCAGCAAAGGCAAATACAGTGTATGGGAAGCAATGCAGAGTGGAGCAAGTTCCCCCACTAGCACCCTaGCGCCAGCGCTGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: VSAKANTVYGKQCRVEQVPPLAP*RQRCSS
Trigger: GGAGCTGCAGCGCTGGCGCCAGGGTGCTAGTGGGGG...AACTTGCTCCACTCTGCATTGCTTCCCATACACTGTATTTGCCTTTGCTGATAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
CDS-3UTR CCA 90 bp ATCAAGAAGTGGCTTGCCTTTCTGCATGTAACTTGGCTTTGGAGGTTACTGCCAAGTCGAGGTCGGCGATaGGGAAGGGGGCTGGAGGGA +
Preference number: 4 (lower is better)
Translates to: IKKWLAFLHVTWLWRLLPSRGRR*GRGLEG
Trigger: TCCCTCCAGCCCCCTTCCCCATCGCCGACCTCGACT...TGGCAGTAACCTCCAAAGCCAAGTTACATGCAGAAAGGCAAGCCACTTCTTGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
CDS-3UTR GCA 90 bp ATCAGCAAAGGCAAATACAGTGTATGGGAAGCAATGCAGAGTGGAGCAAGTTCCAAGACTCGGTGCAGCTaGAGCACCCGGCTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: ISKGKYSVWEAMQSGASSKTRCS*STRLSS
Trigger: GCTGGAGAGCCGGGTGCTGCAGCTGCACCGAGTCTT...GGAACTTGCTCCACTCTGCATTGCTTCCCATACACTGTATTTGCCTTTGCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
CDS-3UTR GCA 90 bp CAGAATGAGGAGTCTATCTTTAAGAAGAAATTCTTCTCTCAGTCACACTGGCAACCCTGGCGCCAGCGCTaGAGCTCCTGCCCTTCCACG +
Preference number: 4 (lower is better)
Translates to: QNEESIFKKKFFSQSHWQPWRQR*SSCPST
Trigger: CGTGGAAGGGCAGGAGCTGCAGCGCTGGCGCCAGGG...TTGCCAGTGTGACTGAGAGAAGAATTTCTTCTTAAAGATAGACTCCTCATTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
CDS TCA 90 bp GCAGCGCCGGGGGACGACCCCGGCGACCGCGGCGCGCACCCTTCTTaGGACGGGACCCGTGCGCAGCCAGGTAGAGCTCGGCCTGGGCCA +
Preference number: 5 (lower is better)
Translates to: AAPGDDPGDRGAHPS*DGTRAQPGRARPGP
Trigger: TGGCCCAGGCCGAGCTCTACCTGGCTGCGCACGGGTCCCGTCTCAAGAAGGGTGCGCGCCGCGGTCGCCGGGGTCGTCCCCCGGCGCTGC
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
CDS GCA 90 bp CGATGCGCCAGGCGCAGCTCCGCAGCCAAGAAGACTCGGTGCAGCTaGAGCACCCGGCTCTCCAGCTCCGACACCAGGCGCCGGCGGCCC +
Preference number: 5 (lower is better)
Translates to: RCARRSSAAKKTRCS*STRLSSSDTRRRRP
Trigger: GGGCCGCCGGCGCCTGGTGTCGGAGCTGGAGAGCCGGGTGCTGCAGCTGCACCGAGTCTTCTTGGCTGCGGAGCTGCGCCTGGCGCATCG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
CDS GCA 90 bp TCGGCGCGATGCGCCAGGCGCAGCTCCGCAGCCAAGAAGACTCGGTaGAGCTGCAGCACCCGGCTCTCCAGCTCCGACACCAGGCGCCGG +
Preference number: 5 (lower is better)
Translates to: SARCARRSSAAKKTR*SCSTRLSSSDTRRR
Trigger: CCGGCGCCTGGTGTCGGAGCTGGAGAGCCGGGTGCTGCAGCTGCACCGAGTCTTCTTGGCTGCGGAGCTGCGCCTGGCGCATCGCGCCGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
CDS GCA 72 bp CCCCCACTAGCACCCTGGCGCCAGCGCTGCAGCTCCTaGCCTTCCACGGGTGTCTCGGCCGCCTCGGGTAAG +
Preference number: 6 (lower is better)
Translates to: PPLAPWRQRCSS*PSTGVSAASGK
Trigger: CTTACCCGAGGCGGCCGAGACACCCGTGGAAGGGCAGGAGCTGCAGCGCTGGCGCCAGGGTGCTAGTGGGGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2
CDS GCA 72 bp TGCGCCAGGCGCAGCTCCGCAGCCAAGAAGACTCGGTaGAGCTGCAGCACCCGGCTCTCCAGCTCCGACACC +
Preference number: 6 (lower is better)
Translates to: CARRSSAAKKTR*SCSTRLSSSDT
Trigger: GGTGTCGGAGCTGGAGAGCCGGGTGCTGCAGCTGCACCGAGTCTTCTTGGCTGCGGAGCTGCGCCTGGCGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125541.2