Pregenerated sensors for TRNAU1AP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028898Ensembl transcript IDs: ENSMUST00000030730.14, ENSMUST00000105962.10, ENSMUST00000125513.9, ENSMUST00000127402.8, ENSMUST00000137520.8, ENSMUST00000147652.8
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGGATGGCCACACTCAGCCGCACGGGTTTACACCCCAGTCCCACTaGTCCCTGGCACTCCGTCAAGGCTCGCTTCTGTTCCAACTCATC | + |
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Preference number: 1 (lower is better) Translates to: RDGHTQPHGFTPQSH*SLALRQGSLLFQLI Trigger: GATGAGTTGGAACAGAAGCGAGCCTTGACGGAGTGCCAGGGAGCAGTGGGACTGGGGTGTAAACCCGTGCGGCTGAGTGTGGCCATCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000125513.9 ENSMUST00000137520.8 ENSMUST00000147652.8 |
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| 3UTR CCA 90 bp | GCCACACTCAGCCGCACGGGTTTACACCCCAGTCCCACTGCTCCCTaGCACTCCGTCAAGGCTCGCTTCTGTTCCAACTCATCTGTGAAT | + |
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Preference number: 1 (lower is better) Translates to: ATLSRTGLHPSPTAP*HSVKARFCSNSSVN Trigger: ATTCACAGATGAGTTGGAACAGAAGCGAGCCTTGACGGAGTGCCAGGGAGCAGTGGGACTGGGGTGTAAACCCGTGCGGCTGAGTGTGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000125513.9 ENSMUST00000137520.8 ENSMUST00000147652.8 |
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| 3UTR GCA 90 bp | TGGTGCTCTGGGTGTAGCCATACTGGGGGTAGCTGTAGCTGTAGCTaGCTGTGTTCTGGTCATAGCCCCACTGGGCATAGTAGTTCTGGT | + |
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Preference number: 1 (lower is better) Translates to: WCSGCSHTGGSCSCS*LCSGHSPTGHSSSG Trigger: ACCAGAACTACTATGCCCAGTGGGGCTATGACCAGAACACAGGCAGCTACAGCTACAGCTACCCCCAGTATGGCTACACCCAGAGCACCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147652.8 |
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| 3UTR TCA 90 bp | ATCATAGCTGGGATCTCTGAGGATACAGTGTCCAGGGGCTGCCAGTaGCAGTCCATCAGAGCATCGTACAGTTCCTCGCTCTGCTCCATG | + |
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Preference number: 1 (lower is better) Translates to: IIAGISEDTVSRGCQ*QSIRASYSSSLCSM Trigger: CATGGAGCAGAGCGAGGAACTGTACGATGCTCTGATGGACTGTCACTGGCAGCCCCTGGACACTGTATCCTCAGAGATCCCAGCTATGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147652.8 |
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| 3UTR TCA 90 bp | AGTGACAGTCCATCAGAGCATCGTACAGTTCCTCGCTCTGCTCCATaGACTCTTTGTTGGCTTCAGTCACATCCAGCTGTGGGGCTGGGT | + |
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Preference number: 1 (lower is better) Translates to: SDSPSEHRTVPRSAP*TLCWLQSHPAVGLG Trigger: ACCCAGCCCCACAGCTGGATGTGACTGAAGCCAACAAAGAGTTCATGGAGCAGAGCGAGGAACTGTACGATGCTCTGATGGACTGTCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147652.8 |
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| 3UTR-3UTR GCA 90 bp | ACACTCAGCCGCACGGGTTTACACCCCAGTCCCACTGCTCCCTGGCACTCCGTCGGTCCAAAACCACCTTaGCTCCCCGGCAGGACGGGT | + |
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Preference number: 2 (lower is better) Translates to: TLSRTGLHPSPTAPWHSVGPKPP*LPGRTG Trigger: ACCCGTCCTGCCGGGGAGGCAAGGTGGTTTTGGACC...GACGGAGTGCCAGGGAGCAGTGGGACTGGGGTGTAAACCCGTGCGGCTGAGTGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000125513.9 ENSMUST00000137520.8 ENSMUST00000147652.8 |
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| 3UTR-3UTR GCA 90 bp | GGGATGGCCACACTCAGCCGCACGGGTTTACACCCCAGTCCCACTGCTCCCTGGAGAACTCATACAGCATaGCATCGTCCACGTCGGGGG | + |
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Preference number: 2 (lower is better) Translates to: GMATLSRTGLHPSPTAPWRTHTA*HRPRRG Trigger: CCCCCGACGTGGACGATGGCATGCTGTATGAGTTCT...CCAGGGAGCAGTGGGACTGGGGTGTAAACCCGTGCGGCTGAGTGTGGCCATCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000125513.9 ENSMUST00000137520.8 ENSMUST00000147652.8 |
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| 3UTR-3UTR CCA 90 bp | GCCACACTCAGCCGCACGGGTTTACACCCCAGTCCCACTGCTCCCTGGCACTCCAACGTTTTGCAGGAGTaGCTCCCGGAAGGGGTTTCC | + |
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Preference number: 2 (lower is better) Translates to: ATLSRTGLHPSPTAPWHSNVLQE*LPEGVS Trigger: GGAAACCCCTTCCGGGAGCCACTCCTGCAAAACGTT...GGAGTGCCAGGGAGCAGTGGGACTGGGGTGTAAACCCGTGCGGCTGAGTGTGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000125513.9 |
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| 3UTR-3UTR CCA 90 bp | GCCACACTCAGCCGCACGGGTTTACACCCCAGTCCCACTGCTCCCTGGCACTCCCTTAGACACGCCTGTTaGGTCCAAAACCACCTTGCC | + |
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Preference number: 2 (lower is better) Translates to: ATLSRTGLHPSPTAPWHSLRHAC*VQNHLA Trigger: GGCAAGGTGGTTTTGGACCCAACAGGCGTGTCTAAG...GGAGTGCCAGGGAGCAGTGGGACTGGGGTGTAAACCCGTGCGGCTGAGTGTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000125513.9 ENSMUST00000147652.8 |
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| 3UTR-3UTR CCA 90 bp | GGGATGGCCACACTCAGCCGCACGGGTTTACACCCCAGTCCCACTGCTCCCTGGCTCAGGGCTATTGTCTaGCTGTTTCCCATAAGTGGC | + |
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Preference number: 2 (lower is better) Translates to: GMATLSRTGLHPSPTAPWLRAIV*LFPISG Trigger: GCCACTTATGGGAAACAGCCAGACAATAGCCCTGAG...CCAGGGAGCAGTGGGACTGGGGTGTAAACCCGTGCGGCTGAGTGTGGCCATCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000125513.9 ENSMUST00000137520.8 ENSMUST00000147652.8 |
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| 3UTR-3UTR GCA 90 bp | TGGCTGTACTCCACTGGCTTTACCCGGCTCGCTTTAGGGATGGCCACACTCAGCAGAACTCATACAGCATaGCATCGTCCACGTCGGGGG | + |
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Preference number: 2 (lower is better) Translates to: WLYSTGFTRLALGMATLSRTHTA*HRPRRG Trigger: CCCCCGACGTGGACGATGGCATGCTGTATGAGTTCT...GCTGAGTGTGGCCATCCCTAAAGCGAGCCGGGTAAAGCCAGTGGAGTACAGCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000137520.8 ENSMUST00000147652.8 |
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| 3UTR-3UTR TCA 90 bp | ACTCAGCCGCACGGGTTTACACCCCAGTCCCACTGCTCCCTGGCACTCCGTCAAAGGACGGGTAGACTTTaGCAAAGAACTCATACAGCA | + |
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Preference number: 2 (lower is better) Translates to: TQPHGFTPQSHCSLALRQRTGRL*QRTHTA Trigger: TGCTGTATGAGTTCTTTGTCAAAGTCTACCCGTCCT...TTGACGGAGTGCCAGGGAGCAGTGGGACTGGGGTGTAAACCCGTGCGGCTGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000125513.9 ENSMUST00000137520.8 ENSMUST00000147652.8 |
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| 3UTR-3UTR GCA 90 bp | GGTCATAGCCCCACTGGGCATAGTAGTTCTGGTACTGCTGGTAATACTGGTTGTGGTCCAAAACCACCTTaGCTCCCCGGCAGGACGGGT | + |
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Preference number: 2 (lower is better) Translates to: GHSPTGHSSSGTAGNTGCGPKPP*LPGRTG Trigger: ACCCGTCCTGCCGGGGAGGCAAGGTGGTTTTGGACC...ACAACCAGTATTACCAGCAGTACCAGAACTACTATGCCCAGTGGGGCTATGACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000147652.8 |
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| 3UTR CAA 90 bp | ATCAGAGCATCGTACAGTTCCTCGCTCTGCTCCATGAACTCTTTGTaGGCTTCAGTCACATCCAGCTGTGGGGCTGGGTCTTCCAGAGCA | + |
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Preference number: 2 (lower is better) Translates to: IRASYSSSLCSMNSL*ASVTSSCGAGSSRA Trigger: TGCTCTGGAAGACCCAGCCCCACAGCTGGATGTGACTGAAGCCAACAAAGAGTTCATGGAGCAGAGCGAGGAACTGTACGATGCTCTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147652.8 |
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| 3UTR CAA 90 bp | TCCATCAGAGCATCGTACAGTTCCTCGCTCTGCTCCATGAACTCTTaGTTGGCTTCAGTCACATCCAGCTGTGGGGCTGGGTCTTCCAGA | + |
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Preference number: 2 (lower is better) Translates to: SIRASYSSSLCSMNS*LASVTSSCGAGSSR Trigger: TCTGGAAGACCCAGCCCCACAGCTGGATGTGACTGAAGCCAACAAAGAGTTCATGGAGCAGAGCGAGGAACTGTACGATGCTCTGATGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147652.8 |
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| 3UTR-3UTR GCA 90 bp | GGTCCCCCACAAACAGGGAGTACTCAGGGCTATTGTCTGGCTGTTTCCCATAAGCAGTTTAAAACGTTTTaGAGGAGTGGCTCCCGGAAG | + |
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Preference number: 2 (lower is better) Translates to: GPPQTGSTQGYCLAVSHKQFKTF*RSGSRK Trigger: CTTCCGGGAGCCACTCCTGCAAAACGTTTTAAACTG...CTTATGGGAAACAGCCAGACAATAGCCCTGAGTACTCCCTGTTTGTGGGGGACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000125513.9 |
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| 3UTR-3UTR CCA 90 bp | TCCCTGGCACTCCGTCAAGGCTCGCTTCTGTTCCAACTCATCTGTGAATTTCACCTCAGGGCTATTGTCTaGCTGTTTCCCATAAGTGGC | + |
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Preference number: 2 (lower is better) Translates to: SLALRQGSLLFQLICEFHLRAIV*LFPISG Trigger: GCCACTTATGGGAAACAGCCAGACAATAGCCCTGAG...GTGAAATTCACAGATGAGTTGGAACAGAAGCGAGCCTTGACGGAGTGCCAGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000125513.9 ENSMUST00000137520.8 ENSMUST00000147652.8 |
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| 3UTR-3UTR CAA 90 bp | CACTCAGCCGCACGGGTTTACACCCCAGTCCCACTGCTCCCTGGCACTCCGTCAGGGTCCAAAACCACCTaGCCTCCCCGGCAGGACGGG | + |
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Preference number: 3 (lower is better) Translates to: HSAARVYTPVPLLPGTPSGSKTT*PPRQDG Trigger: CCCGTCCTGCCGGGGAGGCAAGGTGGTTTTGGACCC...TGACGGAGTGCCAGGGAGCAGTGGGACTGGGGTGTAAACCCGTGCGGCTGAGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000125513.9 ENSMUST00000137520.8 ENSMUST00000147652.8 |
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| 3UTR GCA 72 bp | CACACTCAGCCGCACGGGTTTACACCCCAGTCCCACTaGTCCCTGGCACTCCGTCAAGGCTCGCTTCTGTTC | + |
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Preference number: 3 (lower is better) Translates to: HTQPHGFTPQSH*SLALRQGSLLF Trigger: GAACAGAAGCGAGCCTTGACGGAGTGCCAGGGAGCAGTGGGACTGGGGTGTAAACCCGTGCGGCTGAGTGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000125513.9 ENSMUST00000137520.8 ENSMUST00000147652.8 |
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| 3UTR-3UTR CAA 90 bp | GTTCTGGTCATAGCCCCACTGGGCATAGTAGTTCTGGTACTGCTGGTAATACTGGGGTCCAAAACCACCTaGCCTCCCCGGCAGGACGGG | + |
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Preference number: 3 (lower is better) Translates to: VLVIAPLGIVVLVLLVILGSKTT*PPRQDG Trigger: CCCGTCCTGCCGGGGAGGCAAGGTGGTTTTGGACCC...CAGTATTACCAGCAGTACCAGAACTACTATGCCCAGTGGGGCTATGACCAGAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000147652.8 |
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| 3UTR TCA 72 bp | GGGATCTCTGAGGATACAGTGTCCAGGGGCTGCCAGTaGCAGTCCATCAGAGCATCGTACAGTTCCTCGCTC | + |
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Preference number: 3 (lower is better) Translates to: GISEDTVSRGCQ*QSIRASYSSSL Trigger: GAGCGAGGAACTGTACGATGCTCTGATGGACTGTCACTGGCAGCCCCTGGACACTGTATCCTCAGAGATCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147652.8 |
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| 3UTR GCA 72 bp | GGGTGTAGCCATACTGGGGGTAGCTGTAGCTGTAGCTaGCTGTGTTCTGGTCATAGCCCCACTGGGCATAGT | + |
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Preference number: 3 (lower is better) Translates to: GCSHTGGSCSCS*LCSGHSPTGHS Trigger: ACTATGCCCAGTGGGGCTATGACCAGAACACAGGCAGCTACAGCTACAGCTACCCCCAGTATGGCTACACCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147652.8 |
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| 3UTR TCA 72 bp | AAACCACCTTGCCTCCCCGGCAGGACGGGTAGACTTTaGCAAAGAACTCATACAGCATGCCATCGTCCACGT | + |
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Preference number: 3 (lower is better) Translates to: KPPCLPGRTGRL*QRTHTACHRPR Trigger: ACGTGGACGATGGCATGCTGTATGAGTTCTTTGTCAAAGTCTACCCGTCCTGCCGGGGAGGCAAGGTGGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000125513.9 ENSMUST00000137520.8 ENSMUST00000147652.8 |
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| 3UTR CCA 72 bp | CATGAACTCTTTGTTGGCTTCAGTCACATCCAGCTGTaGGGCTGGGTCTTCCAGAGCATCATCCCCAACCTC | + |
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Preference number: 3 (lower is better) Translates to: HELFVGFSHIQL*GWVFQSIIPNL Trigger: GAGGTTGGGGATGATGCTCTGGAAGACCCAGCCCCACAGCTGGATGTGACTGAAGCCAACAAAGAGTTCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147652.8 |
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| 3UTR CCA 72 bp | GTTGTAGCTGTAACTGTACATCTGGCTGTACTCCACTaGCTTTACCCGGCTCGCTTTAGGGATGGCCACACT | + |
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Preference number: 3 (lower is better) Translates to: VVAVTVHLAVLH*LYPARFRDGHT Trigger: AGTGTGGCCATCCCTAAAGCGAGCCGGGTAAAGCCAGTGGAGTACAGCCAGATGTACAGTTACAGCTACAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000137520.8 ENSMUST00000147652.8 |
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| CDS-3UTR GCA 90 bp | GCCACACTCAGCCGCACGGGTTTACACCCCAGTCCCACTGCTCCCTGGCACTCCCAGTTTAAAACGTTTTaGCCAGTGAGGCGGTTTCGG | + |
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Preference number: 4 (lower is better) Translates to: ATLSRTGLHPSPTAPWHSQFKTF*PVRRFR Trigger: CCGAAACCGCCTCACTGGGCAAAACGTTTTAAACTG...GGAGTGCCAGGGAGCAGTGGGACTGGGGTGTAAACCCGTGCGGCTGAGTGTGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000137520.8 |
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| CDS-3UTR GCA 90 bp | ACTCAGCCGCACGGGTTTACACCCCAGTCCCACTGCTCCCTGGCACTCCGTCAAGGCTGTGGCCAAATCTaGGAATTCCACAAAGCAGTA | + |
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Preference number: 4 (lower is better) Translates to: TQPHGFTPQSHCSLALRQGCGQI*EFHKAV Trigger: TACTGCTTTGTGGAATTCGCAGATTTGGCCACAGCC...TTGACGGAGTGCCAGGGAGCAGTGGGACTGGGGTGTAAACCCGTGCGGCTGAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000125513.9 ENSMUST00000147652.8 |
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| 3UTR CAA 72 bp | GCATCGTACAGTTCCTCGCTCTGCTCCATGAACTCTTaGTTGGCTTCAGTCACATCCAGCTGTGGGGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: ASYSSSLCSMNS*LASVTSSCGAG Trigger: CCCAGCCCCACAGCTGGATGTGACTGAAGCCAACAAAGAGTTCATGGAGCAGAGCGAGGAACTGTACGATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147652.8 |
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| 3UTR CAA 72 bp | TCGTACAGTTCCTCGCTCTGCTCCATGAACTCTTTGTaGGCTTCAGTCACATCCAGCTGTGGGGCTGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: SYSSSLCSMNSL*ASVTSSCGAGS Trigger: AGACCCAGCCCCACAGCTGGATGTGACTGAAGCCAACAAAGAGTTCATGGAGCAGAGCGAGGAACTGTACGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147652.8 |
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| CDS-3UTR CCA 90 bp | GTCCAAAACCACCTTGCCTCCCCGGCAGGACGGGTAGACTTTGACAAAGAACTCAAAGCAGTAGCCAGCTaGGATTCTCAACTGCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: VQNHLASPAGRVDFDKELKAVAS*DSQLLP Trigger: AGGCAGCAGTTGAGAATCCCAGCTGGCTACTGCTTT...GAGTTCTTTGTCAAAGTCTACCCGTCCTGCCGGGGAGGCAAGGTGGTTTTGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125513.9 |
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| CDS-3UTR GCA 90 bp | GTCCAAAACCACCTTGCCTCCCCGGCAGGACGGGTAGACTTTGACAAAGAACTCGGCTGTGGCCAAATCTaGGAATTCCACAAAGCAGTA | + |
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Preference number: 4 (lower is better) Translates to: VQNHLASPAGRVDFDKELGCGQI*EFHKAV Trigger: TACTGCTTTGTGGAATTCGCAGATTTGGCCACAGCC...GAGTTCTTTGTCAAAGTCTACCCGTCCTGCCGGGGAGGCAAGGTGGTTTTGGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000125513.9 ENSMUST00000147652.8 |
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| CDS-3UTR CCA 90 bp | GCCTCCCCGGCAGGACGGGTAGACTTTGACAAAGAACTCATACAGCATGCCATCAACACTTCTCGGCTGTaGCCAAATCTGCGAATTCCA | + |
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Preference number: 4 (lower is better) Translates to: ASPAGRVDFDKELIQHAINTSRL*PNLRIP Trigger: TGGAATTCGCAGATTTGGCCACAGCCGAGAAGTGTT...GATGGCATGCTGTATGAGTTCTTTGTCAAAGTCTACCCGTCCTGCCGGGGAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000125513.9 ENSMUST00000147652.8 |
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| CDS-3UTR CCA 90 bp | ACTGCTCCCTGGCACTCCGTCAAGGCTCGCTTCTGTTCCAACTCATCTGTGAATAACACTTCTCGGCTGTaGCCAAATCTGCGAATTCCA | + |
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Preference number: 4 (lower is better) Translates to: TAPWHSVKARFCSNSSVNNTSRL*PNLRIP Trigger: TGGAATTCGCAGATTTGGCCACAGCCGAGAAGTGTT...ATTCACAGATGAGTTGGAACAGAAGCGAGCCTTGACGGAGTGCCAGGGAGCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000125513.9 ENSMUST00000147652.8 |
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| CDS-3UTR GCA 90 bp | CAAACAGGGAGTACTCAGGGCTATTGTCTGGCTGTTTCCCATAAGTGGCATAATGGGATTCTCAACTGCTaGCTCCAGAGTGCTGGGATT | + |
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Preference number: 4 (lower is better) Translates to: QTGSTQGYCLAVSHKWHNGILNC*LQSAGI Trigger: AATCCCAGCACTCTGGAGGCAGCAGTTGAGAATCCC...ATTATGCCACTTATGGGAAACAGCCAGACAATAGCCCTGAGTACTCCCTGTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125513.9 |
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| CDS-3UTR GCA 90 bp | CTCAGGGCTATTGTCTGGCTGTTTCCCATAAGTGGCATAATTCAGTTTAAAACGGCTGGGATTCTCAACTaGTGCCTCCAGAGTGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: LRAIVWLFPISGIIQFKTAGILN*CLQSAG Trigger: CCCAGCACTCTGGAGGCAGCAGTTGAGAATCCCAGC...CGTTTTAAACTGAATTATGCCACTTATGGGAAACAGCCAGACAATAGCCCTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125513.9 |
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| CDS-3UTR GCA 90 bp | TTTCACAAAACCATAGCCCTTAGACACGCCTGTTGGGTCCAAAACCACCTTGCCTTCCCATTAATTTTATaGAAACACTTCTCGGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: FHKTIALRHACWVQNHLAFPLIL*KHFSAV Trigger: CACAGCCGAGAAGTGTTTGCATAAAATTAATGGGAA...GGCAAGGTGGTTTTGGACCCAACAGGCGTGTCTAAGGGCTATGGTTTTGTGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000147652.8 |
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| CDS-3UTR CAA 90 bp | GGCTTTACCCGGCTCGCTTTAGGGATGGCCACACTCAGCCGCACGGGTTTACACCGGTTTCGGATAATTTaGACGCTCATCACGGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: GFTRLALGMATLSRTGLHRFRII*TLITVS Trigger: GGAGACCGTGATGAGCGTCAAAATTATCCGAAACCG...GTGTAAACCCGTGCGGCTGAGTGTGGCCATCCCTAAAGCGAGCCGGGTAAAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000137520.8 ENSMUST00000147652.8 |
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| CDS-3UTR CAA 90 bp | CCCCACAAACAGGGAGTACTCAGGGCTATTGTCTGGCTGTTTCCCATAAGTGGCCGGTTTCGGATAATTTaGACGCTCATCACGGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: PHKQGVLRAIVWLFPISGRFRII*TLITVS Trigger: GGAGACCGTGATGAGCGTCAAAATTATCCGAAACCG...GCCACTTATGGGAAACAGCCAGACAATAGCCCTGAGTACTCCCTGTTTGTGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000137520.8 ENSMUST00000147652.8 |
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| CDS CCA 90 bp | GTAATACTGGTTGTAGCTGTAACTGTACATCTGGCTGTACTCCACTaGCTTTACCCGGCTCCTATTGTCTGGCTGTTTCCCATAAGTGGC | + |
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Preference number: 5 (lower is better) Translates to: VILVVAVTVHLAVLH*LYPAPIVWLFPISG Trigger: GCCACTTATGGGAAACAGCCAGACAATAGGAGCCGGGTAAAGCCAGTGGAGTACAGCCAGATGTACAGTTACAGCTACAACCAGTATTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127402.8 |
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| CDS GCA 90 bp | TTTCCCATTAATTTTATGCAAACACTTCTCGGCTGTGGCCAAATCTaGGAATTCCACAAAGCAGTAGCCAGCTGGGATTCCAGTGAGGCG | + |
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Preference number: 5 (lower is better) Translates to: FPINFMQTLLGCGQI*EFHKAVASWDSSEA Trigger: CGCCTCACTGGAATCCCAGCTGGCTACTGCTTTGTGGAATTCGCAGATTTGGCCACAGCCGAGAAGTGTTTGCATAAAATTAATGGGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030730.14 ENSMUST00000105962.10 ENSMUST00000127402.8 ENSMUST00000147652.8 |
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| CDS GCA 90 bp | CTAAGTAAAGGAGTGGCTCCCGGAAGGGGTTTCCCATTAATTTTATaGAAACACTTCTCGGCTGTGGCCAAATCTGCGAATTCCACAAAG | + |
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Preference number: 5 (lower is better) Translates to: LSKGVAPGRGFPLIL*KHFSAVAKSANSTK Trigger: CTTTGTGGAATTCGCAGATTTGGCCACAGCCGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCGGGAGCCACTCCTTTACTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147652.8 |
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| CDS CCA 72 bp | CTCCACTGGCTTTACCCGGCTCTTAGACACGCCTGTTaGGTCCAAAACCACCTTGCCTCCCCGGCAGGACGG | + |
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Preference number: 6 (lower is better) Translates to: LHWLYPALRHAC*VQNHLASPAGR Trigger: CCGTCCTGCCGGGGAGGCAAGGTGGTTTTGGACCCAACAGGCGTGTCTAAGAGCCGGGTAAAGCCAGTGGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105962.10 |
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| CDS CAA 72 bp | CCAGCTGGGATTCCAGTGAGGCGGTTTCGGATAATTTaGACGCTCATCACGGTCTCCCCCATGGTGGCAAAG | + |
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Preference number: 6 (lower is better) Translates to: PAGIPVRRFRII*TLITVSPMVAK Trigger: CTTTGCCACCATGGGGGAGACCGTGATGAGCGTCAAAATTATCCGAAACCGCCTCACTGGAATCCCAGCTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000030730.14 ENSMUST00000105962.10 ENSMUST00000127402.8 ENSMUST00000147652.8 |
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| CDS CCA 72 bp | GTTGTAGCTGTAACTGTACATCTGGCTGTACTCCACTaGCTTTACCCGGCTCTTAGACACGCCTGTTGGGTC | + |
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Preference number: 6 (lower is better) Translates to: VVAVTVHLAVLH*LYPALRHACWV Trigger: GACCCAACAGGCGTGTCTAAGAGCCGGGTAAAGCCAGTGGAGTACAGCCAGATGTACAGTTACAGCTACAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105962.10 |
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| CDS CCA 72 bp | GTTGTAGCTGTAACTGTACATCTGGCTGTACTCCACTaGCTTTACCCGGCTCCTATTGTCTGGCTGTTTCCC | + |
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Preference number: 6 (lower is better) Translates to: VVAVTVHLAVLH*LYPAPIVWLFP Trigger: GGGAAACAGCCAGACAATAGGAGCCGGGTAAAGCCAGTGGAGTACAGCCAGATGTACAGTTACAGCTACAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127402.8 |
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| CDS GCA 72 bp | GGAGTGGCTCCCGGAAGGGGTTTCCCATTAATTTTATaGAAACACTTCTCGGCTGTGGCCAAATCTGCGAAT | + |
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Preference number: 6 (lower is better) Translates to: GVAPGRGFPLIL*KHFSAVAKSAN Trigger: ATTCGCAGATTTGGCCACAGCCGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCGGGAGCCACTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000030730.14 ENSMUST00000105962.10 ENSMUST00000127402.8 ENSMUST00000147652.8 |
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