Pregenerated sensors for TRMT6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037376Ensembl transcript IDs: ENSMUST00000039554.7
Found 96 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCAAAGTTGGTAATCACAGCAGCCTTTATCAGAACAGCACAAGTTATTAGGAAATCCCCAGAAGGCACTTaGAACATACTTGACAAGAGT | + |
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Preference number: 2 (lower is better) Translates to: PKLVITAAFIRTAQVIRKSPEGT*NILDKS Trigger: ACTCTTGTCAAGTATGTTTCAAGTGCCTTCTGGGGA...TTTCCTAATAACTTGTGCTGTTCTGATAAAGGCTGCTGTGATTACCAACTTTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| 3UTR-3UTR GCA 90 bp | CAGCCTTTATCAGAACAGCACAAGTTATTAGGAAAGCATTTTTATCTTCCAAGACAACACACCAAGAGCTaGTCTGTCCTGCACAAGTCT | + |
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Preference number: 2 (lower is better) Translates to: QPLSEQHKLLGKHFYLPRQHTKS*SVLHKS Trigger: AGACTTGTGCAGGACAGAGCAGCTCTTGGTGTGTTG...TCTTGGAAGATAAAAATGCTTTCCTAATAACTTGTGCTGTTCTGATAAAGGCTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| 3UTR CAA 90 bp | GATACAGGTTTCTGTGTGTCTGTGTCTAGAGAGAGAAAAACCCAATaGTTTAATAGTACACAGAAGTTCCAATCACTTCACCCAGAACTG | + |
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Preference number: 2 (lower is better) Translates to: DTGFCVSVSRERKTQ*FNSTQKFQSLHPEL Trigger: CAGTTCTGGGTGAAGTGATTGGAACTTCTGTGTACTATTAAACAATTGGGTTTTTCTCTCTCTAGACACAGACACACAGAAACCTGTATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| 3UTR-3UTR CCA 90 bp | CCAAAGTTGGTAATCACAGCAGCCTTTATCAGAACAGCACAAGTTATTAGGAAAAGGAAAAGAAATACCTaGATCTTCCTCAGGCCATTG | + |
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Preference number: 2 (lower is better) Translates to: PKLVITAAFIRTAQVIRKRKRNT*IFLRPL Trigger: CAATGGCCTGAGGAAGATCCAGGTATTTCTTTTCCT...TTTCCTAATAACTTGTGCTGTTCTGATAAAGGCTGCTGTGATTACCAACTTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| 3UTR-3UTR CCA 90 bp | GTAATCACAGCAGCCTTTATCAGAACAGCACAAGTTATTAGGAAAGCATTTTTACTGCTCACCATGTTGTaGCTAGTTTGTATTATCATC | + |
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Preference number: 2 (lower is better) Translates to: VITAAFIRTAQVIRKAFLLLTML*LVCIII Trigger: GATGATAATACAAACTAGCCACAACATGGTGAGCAG...TAAAAATGCTTTCCTAATAACTTGTGCTGTTCTGATAAAGGCTGCTGTGATTAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| 3UTR CAA 90 bp | TACTCTAGACATTTTTATTCCTTACAATGGAGATGGTTAAGGAATTaGATTATACTTCTTTCAGAGCAGATAAAGACACCCACCTCACAC | + |
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Preference number: 2 (lower is better) Translates to: YSRHFYSLQWRWLRN*IILLSEQIKTPTSH Trigger: GTGTGAGGTGGGTGTCTTTATCTGCTCTGAAAGAAGTATAATCAAATTCCTTAACCATCTCCATTGTAAGGAATAAAAATGTCTAGAGTA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| 3UTR-3UTR GCA 90 bp | GTAATCACAGCAGCCTTTATCAGAACAGCACAAGTTATTAGGAAAGCATTTTTATTACCAGCTGCAGAATaGCTTGGAACAAACATTAAT | + |
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Preference number: 2 (lower is better) Translates to: VITAAFIRTAQVIRKAFLLPAAE*LGTNIN Trigger: ATTAATGTTTGTTCCAAGGCATTCTGCAGCTGGTAA...TAAAAATGCTTTCCTAATAACTTGTGCTGTTCTGATAAAGGCTGCTGTGATTAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| 3UTR GCA 72 bp | GATCCTTTAAGTACCGAGCCTGCTGTGATACAGGACTaGTGTACCAATCCATTACTGTCCATCAGAGTTGCA | + |
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Preference number: 3 (lower is better) Translates to: DPLSTEPAVIQD*CTNPLLSIRVA Trigger: TGCAACTCTGATGGACAGTAATGGATTGGTACAGCAGTCCTGTATCACAGCAGGCTCGGTACTTAAAGGATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| 3UTR TCA 72 bp | GCACACACATCCATATTGCTTAGGAGGAAGAGTGGATaGGAGGAAATTTCCTTTCACTGCTCACCATGTTGT | + |
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Preference number: 3 (lower is better) Translates to: AHTSILLRRKSG*EEISFHCSPCC Trigger: ACAACATGGTGAGCAGTGAAAGGAAATTTCCTCTCATCCACTCTTCCTCCTAAGCAATATGGATGTGTGTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| 3UTR TCA 72 bp | TGTACAGACCAGTGTGAGAAATCCCCAGAAGGCACTTaGAACATACTTGACAAGAGTAACAGCAACACACCA | + |
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Preference number: 3 (lower is better) Translates to: CTDQCEKSPEGT*NILDKSNSNTP Trigger: TGGTGTGTTGCTGTTACTCTTGTCAAGTATGTTTCAAGTGCCTTCTGGGGATTTCTCACACTGGTCTGTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| 3UTR-3UTR CAA 90 bp | GAACAGCACAAGTTATTAGGAAAGCATTTTTATCTTCCAAGATGCTCCACGCTGGCACACACATCCATATaGCTTAGGAGGAAGAGTGGA | + |
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Preference number: 3 (lower is better) Translates to: EQHKLLGKHFYLPRCSTLAHTSI*LRRKSG Trigger: TCCACTCTTCCTCCTAAGCAATATGGATGTGTGTGC...CAGCGTGGAGCATCTTGGAAGATAAAAATGCTTTCCTAATAACTTGTGCTGTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| 3UTR-3UTR CAA 90 bp | TGTGTATGCATATATACCAACACTGATACAGGTTTCTGTGTGTCTGTGTCTAGACAGCTGCAGAATGCCTaGGAACAAACATTAATCTCC | + |
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Preference number: 3 (lower is better) Translates to: CVCIYTNTDTGFCVSVSRQLQNA*EQTLIS Trigger: GGAGATTAATGTTTGTTCCAAGGCATTCTGCAGCTG...TCTAGACACAGACACACAGAAACCTGTATCAGTGTTGGTATATATGCATACACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| 3UTR-3UTR CAA 90 bp | AAGGGTAGACGTTTTGGTACTGTAAATCTCACAGGCACACACATCCATATTGCTAACATTTTCAAGGTGTaGACATTCCCAAGGAATCTG | + |
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Preference number: 3 (lower is better) Translates to: KGRRFGTVNLTGTHIHIANIFKV*TFPRNL Trigger: CAGATTCCTTGGGAATGTCAACACCTTGAAAATGTT...AGCAATATGGATGTGTGTGCCTGTGAGATTTACAGTACCAAAACGTCTACCCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| 3UTR-3UTR CAA 90 bp | CCAAAGTTGGTAATCACAGCAGCCTTTATCAGAACAGCACAAGTTATTAGGAAAAAAAAGCTTCTTTCATaGCAGGGCAAGGGTAGACGT | + |
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Preference number: 3 (lower is better) Translates to: PKLVITAAFIRTAQVIRKKKLLS*QGKGRR Trigger: ACGTCTACCCTTGCCCTGCAATGAAAGAAGCTTTTT...TTTCCTAATAACTTGTGCTGTTCTGATAAAGGCTGCTGTGATTACCAACTTTGG 41% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| 3UTR-3UTR CAA 90 bp | CCAAAGTTGGTAATCACAGCAGCCTTTATCAGAACAGCACAAGTTATTAGGAAAGCACTTGAAACATACTaGACAAGAGTAACAGCAACA | + |
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Preference number: 3 (lower is better) Translates to: PKLVITAAFIRTAQVIRKALETY*TRVTAT Trigger: TGTTGCTGTTACTCTTGTCAAGTATGTTTCAAGTGC...TTTCCTAATAACTTGTGCTGTTCTGATAAAGGCTGCTGTGATTACCAACTTTGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR TCA 90 bp | AATAAACGTGTATTCCTTCTCTGTCCCACCACAGGTAGTACATTCTGTCCATGCGAGAGGCGGGGGCGGTaGGCTCGGCTGCTCCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: NKRVFLLCPTTGSTFCPCERRGR*ARLLRS Trigger: GCTGCGGAGCAGCCGAGCTCACCGCCCCCGCCTCTC...GCATGGACAGAATGTACTACCTGTGGTGGGACAGAGAAGGAATACACGTTTATT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR TCA 90 bp | CACACACATCCATATTGCTTAGGAGGAAGAGTGGATGAGAGGAAATTTCCTTTCCGCCTGTGCAGGACTTaGGGCTGGGGTCTGCCCGAA | + |
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Preference number: 4 (lower is better) Translates to: HTHPYCLGGRVDERKFPFRLCRT*GWGLPE Trigger: TTCGGGCAGACCCCAGCCTCAAGTCCTGCACAGGCG...GAAAGGAAATTTCCTCTCATCCACTCTTCCTCCTAAGCAATATGGATGTGTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR GCA 90 bp | AGTAACAGCAACACACCAAGAGCTGCTCTGTCCTGCACAAGTCTTTACCACAGTGAAGGCTGCCTCCACTaGTCACGTCAAACGCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: SNSNTPRAALSCTSLYHSEGCLH*SRQTLS Trigger: GCTCAGCGTTTGACGTGAGCAGTGGAGGCAGCCTTC...ACTGTGGTAAAGACTTGTGCAGGACAGAGCAGCTCTTGGTGTGTTGCTGTTACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR GCA 90 bp | ATCAGAGTTGCAGCCCTGACTAATCCTTCTGCAACAGAGGCAAACGAAAGGCTTTCCAAAACATGCTGTTaGCGCCCGAACGGGTCCATC | + |
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Preference number: 4 (lower is better) Translates to: IRVAALTNPSATEANERLSKTCC*RPNGSI Trigger: GATGGACCCGTTCGGGCGGCAACAGCATGTTTTGGA...AAGCCTTTCGTTTGCCTCTGTTGCAGAAGGATTAGTCAGGGCTGCAACTCTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR GCA 90 bp | TTACTGTCCATCAGAGTTGCAGCCCTGACTAATCCTTCTGCAACAGAGGCAAACGGGAAATCCAAAACATaGTGTTGCCGCCCGAACGGG | + |
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Preference number: 4 (lower is better) Translates to: LLSIRVAALTNPSATEANGKSKT*CCRPNG Trigger: CCCGTTCGGGCGGCAACAGCATGTTTTGGATTTCCC...GTTTGCCTCTGTTGCAGAAGGATTAGTCAGGGCTGCAACTCTGATGGACAGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR TCA 90 bp | ACACAGAAGTTCCAATCACTTCACCCAGAACTGAGGAGACCCTTTCACCGCAAAGCTGTCTTTAGGCTCTaGGGACAGCATCTCAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: TQKFQSLHPELRRPFHRKAVFRL*GQHLSR Trigger: TCTGCTGAGATGCTGTCCTCAGAGCCTAAAGACAGC...TTTGCGGTGAAAGGGTCTCCTCAGTTCTGGGTGAAGTGATTGGAACTTCTGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR CCA 90 bp | AAAGCATTTTTATCTTCCAAGATGCTCCACGCTGGCCAGGCTTCTATGATGACACAGTGCCTGCTTCTTTaGTCTCTGACGCGGGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: KAFLSSKMLHAGQASMMTQCLLL*SLTRAP Trigger: AGGAGCCCGCGTCAGAGACCAAAGAAGCAGGCACTG...TGTCATCATAGAAGCCTGGCCAGCGTGGAGCATCTTGGAAGATAAAAATGCTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR CCA 90 bp | GAACAGCACAAGTTATTAGGAAAGCATTTTTATCTTCCAAGATGCTCCACGCTGACAGCAGCAGGGGCGTaGGGTGGAAACGACTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: EQHKLLGKHFYLPRCSTLTAAGA*GGNDWP Trigger: TGGCCAGTCGTTTCCACCCCACGCCCCTGCTGCTGT...CAGCGTGGAGCATCTTGGAAGATAAAAATGCTTTCCTAATAACTTGTGCTGTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR TCA 90 bp | TTGCAGGGCAAGGGTAGACGTTTTGGTACTGTAAATCTCACAGGCACACACATCTGGTCTCTGTTCTCCTaGGTTGTTTTCTGCGGCATC | + |
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Preference number: 4 (lower is better) Translates to: LQGKGRRFGTVNLTGTHIWSLFS*VVFCGI Trigger: GATGCCGCAGAAAACAACTCAGGAGAACAGAGACCA...GATGTGTGTGCCTGTGAGATTTACAGTACCAAAACGTCTACCCTTGCCCTGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR CCA 90 bp | TCTGCAGATCCTTTAAGTACCGAGCCTGCTGTGATACAGGACTGCTGTACCAATCGTAACTATGGCCGATaGCGTTATCCAGGTAGAACC | + |
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Preference number: 4 (lower is better) Translates to: SADPLSTEPAVIQDCCTNRNYGR*RYPGRT Trigger: GGTTCTACCTGGATAACGCCATCGGCCATAGTTACG...ATTGGTACAGCAGTCCTGTATCACAGCAGGCTCGGTACTTAAAGGATCTGCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR CCA 90 bp | AACATACTTGACAAGAGTAACAGCAACACACCAAGAGCTGCTCTGTCCTGCACAGGGCTCCTTATTCTCTaGGTCCCCAGGAACAATCTC | + |
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Preference number: 4 (lower is better) Translates to: NILDKSNSNTPRAALSCTGLLIL*VPRNNL Trigger: GAGATTGTTCCTGGGGACCCAGAGAATAAGGAGCCC...TGTGCAGGACAGAGCAGCTCTTGGTGTGTTGCTGTTACTCTTGTCAAGTATGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR TCA 90 bp | TTACTGTCCATCAGAGTTGCAGCCCTGACTAATCCTTCTGCAACAGAGGCAAACTCTCCAGGATACAGCTaGATAATGGAGCCAAAGCCT | + |
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Preference number: 4 (lower is better) Translates to: LLSIRVAALTNPSATEANSPGYS*IMEPKP Trigger: AGGCTTTGGCTCCATTATTCAGCTGTATCCTGGAGA...GTTTGCCTCTGTTGCAGAAGGATTAGTCAGGGCTGCAACTCTGATGGACAGTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR TCA 90 bp | AACATACTTGACAAGAGTAACAGCAACACACCAAGAGCTGCTCTGTCCTGCACATGTCTGAGACAACAGTaGACCCTGACAGAAGGTACC | + |
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Preference number: 4 (lower is better) Translates to: NILDKSNSNTPRAALSCTCLRQQ*TLTEGT Trigger: GGTACCTTCTGTCAGGGTTCACTGTTGTCTCAGACA...TGTGCAGGACAGAGCAGCTCTTGGTGTGTTGCTGTTACTCTTGTCAAGTATGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR TCA 90 bp | AATAAACGTGTATTCCTTCTCTGTCCCACCACAGGTAGTACATTCTGTCCATGCGAACCTGGTAATTTCTaGGCCAGGTTTCAGACAACC | + |
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Preference number: 4 (lower is better) Translates to: NKRVFLLCPTTGSTFCPCEPGNF*ARFQTT Trigger: GGTTGTCTGAAACCTGGCTCAGAAATTACCAGGTTC...GCATGGACAGAATGTACTACCTGTGGTGGGACAGAGAAGGAATACACGTTTATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR GCA 90 bp | CACACACATCCATATTGCTTAGGAGGAAGAGTGGATGAGAGGAAATTTCCTTTCCCGCTGGACTTGCACTaGTTTGAACACATCTTCTCG | + |
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Preference number: 4 (lower is better) Translates to: HTHPYCLGGRVDERKFPFPLDLH*FEHIFS Trigger: CGAGAAGATGTGTTCAAAGCAGTGCAAGTCCAGCGG...GAAAGGAAATTTCCTCTCATCCACTCTTCCTCCTAAGCAATATGGATGTGTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR CCA 90 bp | CATCCATATTGCTTAGGAGGAAGAGTGGATGAGAGGAAATTTCCTTTCACTGCTTGGGGTGGAAACGACTaGCCACAATCAAACCATCTG | + |
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Preference number: 4 (lower is better) Translates to: HPYCLGGRVDERKFPFTAWGGND*PQSNHL Trigger: CAGATGGTTTGATTGTGGCCAGTCGTTTCCACCCCA...AGCAGTGAAAGGAAATTTCCTCTCATCCACTCTTCCTCCTAAGCAATATGGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR TCA 90 bp | TCACAGCAGCCTTTATCAGAACAGCACAAGTTATTAGGAAAGCATTTTTATCTTAGCTTCTTCCTGAGCTaGAGGCTGCCTCCACTGCTC | + |
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Preference number: 4 (lower is better) Translates to: SQQPLSEQHKLLGKHFYLSFFLS*RLPPLL Trigger: GAGCAGTGGAGGCAGCCTTCAGCTCAGGAAGAAGCT...AAGATAAAAATGCTTTCCTAATAACTTGTGCTGTTCTGATAAAGGCTGCTGTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR CCA 90 bp | AATAAACGTGTATTCCTTCTCTGTCCCACCACAGGTAGTACATTCTGTCCATGCCCCAACGTCAACATCTaGGCTAGTGTATCATATCTC | + |
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Preference number: 4 (lower is better) Translates to: NKRVFLLCPTTGSTFCPCPNVNI*ASVSYL Trigger: GAGATATGATACACTAGCCCAGATGTTGACGTTGGG...GCATGGACAGAATGTACTACCTGTGGTGGGACAGAGAAGGAATACACGTTTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR CCA 90 bp | GAGAGAAAAACCCAATTGTTTAATAGTACACAGAAGTTCCAATCACTTCACCCACCATTCGTTCCATCATaGCACCTAGCACCAAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: ERKTQLFNSTQKFQSLHPPFVPS*HLAPSP Trigger: CGGGCTTGGTGCTAGGTGCCATGATGGAACGAATGG...TGGGTGAAGTGATTGGAACTTCTGTGTACTATTAAACAATTGGGTTTTTCTCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR CCA 90 bp | GAGTGGATGAGAGGAAATTTCCTTTCACTGCTCACCATGTTGTGGCTAGTTTGTCACTCATCAATAATTTaGGATGACTCCGATCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: EWMRGNFLSLLTMLWLVCHSSII*DDSDLA Trigger: TGCCAGATCGGAGTCATCCCAAATTATTGATGAGTG...ACAAACTAGCCACAACATGGTGAGCAGTGAAAGGAAATTTCCTCTCATCCACTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR TCA 90 bp | CAGCCTTTATCAGAACAGCACAAGTTATTAGGAAAGCATTTTTATCTTCCAAGACCGAGCACGTTTCCATaGCAATCATTTTATTGCCGG | + |
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Preference number: 4 (lower is better) Translates to: QPLSEQHKLLGKHFYLPRPSTFP*QSFYCR Trigger: CCGGCAATAAAATGATTGTCATGGAAACGTGCTCGG...TCTTGGAAGATAAAAATGCTTTCCTAATAACTTGTGCTGTTCTGATAAAGGCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR TCA 90 bp | TGTGTATGCATATATACCAACACTGATACAGGTTTCTGTGTGTCTGTGTCTAGAGACTGTTTACTTTGTTaGGAGGGAACTCGTAAAGAC | + |
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Preference number: 4 (lower is better) Translates to: CVCIYTNTDTGFCVSVSRDCLLC*EGTRKD Trigger: GTCTTTACGAGTTCCCTCTCAACAAAGTAAACAGTC...TCTAGACACAGACACACAGAAACCTGTATCAGTGTTGGTATATATGCATACACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR CCA 90 bp | CACACACATCCATATTGCTTAGGAGGAAGAGTGGATGAGAGGAAATTTCCTTTCAAGAATACGGGTAGATaGCTTCAAGATAGTAACGAT | + |
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Preference number: 4 (lower is better) Translates to: HTHPYCLGGRVDERKFPFKNTGR*LQDSND Trigger: ATCGTTACTATCTTGAAGCCATCTACCCGTATTCTT...GAAAGGAAATTTCCTCTCATCCACTCTTCCTCCTAAGCAATATGGATGTGTGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR CCA 90 bp | TGTGTATGCATATATACCAACACTGATACAGGTTTCTGTGTGTCTGTGTCTAGAGTTACTTTCTTCAACTaGAGTGCTGTCTTTAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: CVCIYTNTDTGFCVSVSRVTFFN*SAVFRL Trigger: GAGCCTAAAGACAGCACTCCAGTTGAAGAAAGTAAC...TCTAGACACAGACACACAGAAACCTGTATCAGTGTTGGTATATATGCATACACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR GCA 90 bp | CTCTCAAGGGAACAAGAGCCTTCAATTACTCTAGACATTTTTATTCCTTACAATTTTCTCCGCTGGACTTaGACTGCTTTGAACACATCT | + |
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Preference number: 4 (lower is better) Translates to: LSREQEPSITLDIFIPYNFLRWT*TALNTS Trigger: AGATGTGTTCAAAGCAGTGCAAGTCCAGCGGAGAAA...ATTGTAAGGAATAAAAATGTCTAGAGTAATTGAAGGCTCTTGTTCCCTTGAGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR GCA 90 bp | CCAAAGTTGGTAATCACAGCAGCCTTTATCAGAACAGCACAAGTTATTAGGAAATATTTCGATTATCAGTaGCTGCTTCTTTGGTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: PKLVITAAFIRTAQVIRKYFDYQ*LLLWSL Trigger: CAGAGACCAAAGAAGCAGGCACTGATAATCGAAATA...TTTCCTAATAACTTGTGCTGTTCTGATAAAGGCTGCTGTGATTACCAACTTTGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR GCA 90 bp | CCTTTCACTGCTCACCATGTTGTGGCTAGTTTGTATTATCATCTTTGCTTAAAACACAATCAAACCATCTaGATTTCTTTCTCCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: PFTAHHVVASLYYHLCLKHNQTI*ISFSQQ Trigger: CTGCTGGGAGAAAGAAATGCAGATGGTTTGATTGTG...TTTTAAGCAAAGATGATAATACAAACTAGCCACAACATGGTGAGCAGTGAAAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR TCA 90 bp | TGTCTAGAGAGAGAAAAACCCAATTGTTTAATAGTACACAGAAGTTCCAATCACACTCGTAAAGACCACTaGGGAAAGATTTGGGAAATC | + |
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Preference number: 4 (lower is better) Translates to: CLEREKPNCLIVHRSSNHTRKDH*GKIWEI Trigger: GATTTCCCAAATCTTTCCTCAGTGGTCTTTACGAGT...GTGATTGGAACTTCTGTGTACTATTAAACAATTGGGTTTTTCTCTCTCTAGACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| 3UTR CAA 72 bp | TTCTGTGTGTCTGTGTCTAGAGAGAGAAAAACCCAATaGTTTAATAGTACACAGAAGTTCCAATCACTTCAC | + |
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Preference number: 4 (lower is better) Translates to: FCVSVSRERKTQ*FNSTQKFQSLH Trigger: GTGAAGTGATTGGAACTTCTGTGTACTATTAAACAATTGGGTTTTTCTCTCTCTAGACACAGACACACAGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS CCA 90 bp | ACATCTTCTCGCTTCAGCACCACGAAGTCACCGTCATGGATGCAGTaGTCCCCGAGAGGCGGGGGCGGTGAGCTCGGCTGCTCCGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: TSSRFSTTKSPSWMQ*SPRGGGGELGCSAA Trigger: AGCTGCGGAGCAGCCGAGCTCACCGCCCCCGCCTCTCGGGGACCACTGCATCCATGACGGTGACTTCGTGGTGCTGAAGCGAGAAGATGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS CCA 90 bp | GCTTTGAACACATCTTCTCGCTTCAGCACCACGAAGTCACCGTCATaGATGCAGTGGTCCCCGAGAGGCGGGGGCGGTGAGCTCGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: ALNTSSRFSTTKSPS*MQWSPRGGGGELGC Trigger: GCAGCCGAGCTCACCGCCCCCGCCTCTCGGGGACCACTGCATCCATGACGGTGACTTCGTGGTGCTGAAGCGAGAAGATGTGTTCAAAGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS-3UTR CAA 90 bp | GCAACAGAGGCAAACGAAAGGCTTACTTCTTCCCAGGAACAGGTGTACACACACGCGCCTGTGCAGGACTaGAGGCTGGGGTCTGCCCGA | + |
|
Preference number: 5 (lower is better) Translates to: ATEANERLTSSQEQVYTHAPVQD*RLGSAR Trigger: TCGGGCAGACCCCAGCCTCAAGTCCTGCACAGGCGC...GTGTGTGTACACCTGTTCCTGGGAAGAAGTAAGCCTTTCGTTTGCCTCTGTTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS GCA 90 bp | CAGCAGGGGCGTGGGGTGGAAACGACTGGCCACAATCAAACCATCTaGATTTCTTTCTCCCAGCAGAGCAGCAGCCTCCAGATGTCTTTT | + |
|
Preference number: 5 (lower is better) Translates to: QQGRGVETTGHNQTI*ISFSQQSSSLQMSF Trigger: AAAAGACATCTGGAGGCTGCTGCTCTGCTGGGAGAAAGAAATGCAGATGGTTTGATTGTGGCCAGTCGTTTCCACCCCACGCCCCTGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CCA 90 bp | CAAAGTCCAGCAAAGACAGCAGCAGGGGCGTGGGGTGGAAACGACTaGCCACAATCAAACCATCTGCATTTCTTTCTCCCAGCAGAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: QSPAKTAAGAWGGND*PQSNHLHFFLPAEQ Trigger: CTGCTCTGCTGGGAGAAAGAAATGCAGATGGTTTGATTGTGGCCAGTCGTTTCCACCCCACGCCCCTGCTGCTGTCTTTGCTGGACTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CCA 90 bp | GCCTTGACGGGGCTACAAAGTCCAGCAAAGACAGCAGCAGGGGCGTaGGGTGGAAACGACTGGCCACAATCAAACCATCTGCATTTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: ALTGLQSPAKTAAGA*GGNDWPQSNHLHFF Trigger: AAAGAAATGCAGATGGTTTGATTGTGGCCAGTCGTTTCCACCCCACGCCCCTGCTGCTGTCTTTGCTGGACTTTGTAGCCCCGTCAAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS TCA 90 bp | TTCCAACAAAGGCTCTTTATACTGACAGTAGACCACAAACGGCCTTaGCGGGGCTACAAAGTCCAGCAAAGACAGCAGCAGGGGCGTGGG | + |
|
Preference number: 5 (lower is better) Translates to: FQQRLFILTVDHKRP*RGYKVQQRQQQGRG Trigger: CCCACGCCCCTGCTGCTGTCTTTGCTGGACTTTGTAGCCCCGTCAAGGCCGTTTGTGGTCTACTGTCAGTATAAAGAGCCTTTGTTGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS-3UTR CAA 90 bp | TCTGCAGATCCTTTAAGTACCGAGCCTGCTGTGATACAGGACTGCTGTACCAATAGACCACAAACGGCCTaGACGGGGCTACAAAGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: SADPLSTEPAVIQDCCTNRPQTA*TGLQSP Trigger: TGGACTTTGTAGCCCCGTCAAGGCCGTTTGTGGTCT...ATTGGTACAGCAGTCCTGTATCACAGCAGGCTCGGTACTTAAAGGATCTGCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS TCA 90 bp | TTCGTTCCATCATGGCACCTAGCACCAAGCCCGAGCACGTTTCCATaGCAATCATTTTATTGCCGGCACGGATATTTCCCAACGTCAACA | + |
|
Preference number: 5 (lower is better) Translates to: FVPSWHLAPSPSTFP*QSFYCRHGYFPTST Trigger: TGTTGACGTTGGGAAATATCCGTGCCGGCAATAAAATGATTGTCATGGAAACGTGCTCGGGCTTGGTGCTAGGTGCCATGATGGAACGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS GCA 90 bp | GAACTCGTAAAGACCACTGAGGAAAGATTTGGGAAATCCAAAACATaGTGTTGCCGCCCGAACGGGTCCATCTCCAGGATACAGCTGAAT | + |
|
Preference number: 5 (lower is better) Translates to: ELVKTTEERFGKSKT*CCRPNGSISRIQLN Trigger: ATTCAGCTGTATCCTGGAGATGGACCCGTTCGGGCGGCAACAGCATGTTTTGGATTTCCCAAATCTTTCCTCAGTGGTCTTTACGAGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS GCA 90 bp | GTAAAGACCACTGAGGAAAGATTTGGGAAATCCAAAACATGCTGTTaGCGCCCGAACGGGTCCATCTCCAGGATACAGCTGAATAATGGA | + |
|
Preference number: 5 (lower is better) Translates to: VKTTEERFGKSKTCC*RPNGSISRIQLNNG Trigger: TCCATTATTCAGCTGTATCCTGGAGATGGACCCGTTCGGGCGGCAACAGCATGTTTTGGATTTCCCAAATCTTTCCTCAGTGGTCTTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CCA 90 bp | TGCCTCCACTGCTCACGTCAAACGCTGAGCCGTAACTATGGCCGATaGCGTTATCCAGGTAGAACCACTGCTTTTCAAAAGTTACTTTTT | + |
|
Preference number: 5 (lower is better) Translates to: CLHCSRQTLSRNYGR*RYPGRTTAFQKLLF Trigger: AAAAAGTAACTTTTGAAAAGCAGTGGTTCTACCTGGATAACGCCATCGGCCATAGTTACGGCTCAGCGTTTGACGTGAGCAGTGGAGGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS-3UTR CAA 90 bp | AGTAACAGCAACACACCAAGAGCTGCTCTGTCCTGCACAAGTCTTTACCACAGTTTTTCTCCGCTGGACTaGCACTGCTTTGAACACATC | + |
|
Preference number: 5 (lower is better) Translates to: SNSNTPRAALSCTSLYHSFSPLD*HCFEHI Trigger: GATGTGTTCAAAGCAGTGCAAGTCCAGCGGAGAAAA...ACTGTGGTAAAGACTTGTGCAGGACAGAGCAGCTCTTGGTGTGTTGCTGTTACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS-3UTR CAA 90 bp | ACACAGAAGTTCCAATCACTTCACCCAGAACTGAGGAGACCCTTTCACCGCAAACAGGAACAATCTCCATaGGTCTCTGTTCTCCTGAGT | + |
|
Preference number: 5 (lower is better) Translates to: TQKFQSLHPELRRPFHRKQEQSP*VSVLLS Trigger: ACTCAGGAGAACAGAGACCAATGGAGATTGTTCCTG...TTTGCGGTGAAAGGGTCTCCTCAGTTCTGGGTGAAGTGATTGGAACTTCTGTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS TCA 90 bp | AAGCTCACCGTTACTTTCTTCAACTGGAGTGCTGTCTTTAGGCTCTaGGGACAGCATCTCAGCAGAAAATGTCCCATTGAGGAGACTGTT | + |
|
Preference number: 5 (lower is better) Translates to: KLTVTFFNWSAVFRL*GQHLSRKCPIEETV Trigger: AACAGTCTCCTCAATGGGACATTTTCTGCTGAGATGCTGTCCTCAGAGCCTAAAGACAGCACTCCAGTTGAAGAAAGTAACGGTGAGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS-3UTR CAA 90 bp | AATAAACGTGTATTCCTTCTCTGTCCCACCACAGGTAGTACATTCTGTCCATGCTGGACTTGCACTGCTTaGAACACATCTTCTCGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: NKRVFLLCPTTGSTFCPCWTCTA*NTSSRF Trigger: GAAGCGAGAAGATGTGTTCAAAGCAGTGCAAGTCCA...GCATGGACAGAATGTACTACCTGTGGTGGGACAGAGAAGGAATACACGTTTATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS-3UTR CAA 90 bp | TGTGTATGCATATATACCAACACTGATACAGGTTTCTGTGTGTCTGTGTCTAGAATCCAAAACATGCTGTaGCCGCCCGAACGGGTCCAT | + |
|
Preference number: 5 (lower is better) Translates to: CVCIYTNTDTGFCVSVSRIQNML*PPERVH Trigger: ATGGACCCGTTCGGGCGGCAACAGCATGTTTTGGAT...TCTAGACACAGACACACAGAAACCTGTATCAGTGTTGGTATATATGCATACACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS-3UTR CAA 90 bp | TCACAGCAGCCTTTATCAGAACAGCACAAGTTATTAGGAAAGCATTTTTATCTTGCTGGCTCCTCAGCCTaGTGTGGGTCTAAAGCGCCT | + |
|
Preference number: 5 (lower is better) Translates to: SQQPLSEQHKLLGKHFYLAGSSA*CGSKAP Trigger: AGGCGCTTTAGACCCACACAAGGCTGAGGAGCCAGC...AAGATAAAAATGCTTTCCTAATAACTTGTGCTGTTCTGATAAAGGCTGCTGTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS-3UTR CAA 90 bp | AAGGGTAGACGTTTTGGTACTGTAAATCTCACAGGCACACACATCCATATTGCTCCCTCTCCCGAAGTTTaGTGTAGCATTCCAACAAAG | + |
|
Preference number: 5 (lower is better) Translates to: KGRRFGTVNLTGTHIHIAPSPEV*CSIPTK Trigger: CTTTGTTGGAATGCTACACAAAACTTCGGGAGAGGG...AGCAATATGGATGTGTGTGCCTGTGAGATTTACAGTACCAAAACGTCTACCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS-3UTR CAA 90 bp | AAAGCATTTTTATCTTCCAAGATGCTCCACGCTGGCCAGGCTTCTATGATGACAGCAGAAAATGTCCCATaGAGGAGACTGTTTACTTTG | + |
|
Preference number: 5 (lower is better) Translates to: KAFLSSKMLHAGQASMMTAENVP*RRLFTL Trigger: CAAAGTAAACAGTCTCCTCAATGGGACATTTTCTGC...TGTCATCATAGAAGCCTGGCCAGCGTGGAGCATCTTGGAAGATAAAAATGCTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS-3UTR CAA 90 bp | CACACACATCCATATTGCTTAGGAGGAAGAGTGGATGAGAGGAAATTTCCTTTCTGGGCAAATTCTGTCTaGTCACGGAATGTTGTACTA | + |
|
Preference number: 5 (lower is better) Translates to: HTHPYCLGGRVDERKFPFWANSV*SRNVVL Trigger: TAGTACAACATTCCGTGACAAGACAGAATTTGCCCA...GAAAGGAAATTTCCTCTCATCCACTCTTCCTCCTAAGCAATATGGATGTGTGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CCA 90 bp | ACAATCATTTTATTGCCGGCACGGATATTTCCCAACGTCAACATCTaGGCTAGTGTATCATATCTCATGTGGTTAATTTTTCCAGGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: TIILLPARIFPNVNI*ASVSYLMWLIFPGS Trigger: AGAACCTGGAAAAATTAACCACATGAGATATGATACACTAGCCCAGATGTTGACGTTGGGAAATATCCGTGCCGGCAATAAAATGATTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS-3UTR CAA 90 bp | GAGAGAAAAACCCAATTGTTTAATAGTACACAGAAGTTCCAATCACTTCACCCAATGACAATCATTTTATaGCCGGCACGGATATTTCCC | + |
|
Preference number: 5 (lower is better) Translates to: ERKTQLFNSTQKFQSLHPMTIIL*PARIFP Trigger: GGGAAATATCCGTGCCGGCAATAAAATGATTGTCAT...TGGGTGAAGTGATTGGAACTTCTGTGTACTATTAAACAATTGGGTTTTTCTCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS TCA 90 bp | TCTCATGTGGTTAATTTTTCCAGGTTCTCTTGCATAATACATAATTaGAAGAATACGGGTAGATGGCTTCAAGATAGTAACGATGGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: SHVVNFSRFSCIIHN*KNTGRWLQDSNDGF Trigger: GAAGCCATCGTTACTATCTTGAAGCCATCTACCCGTATTCTTTCAATTATGTATTATGCAAGAGAACCTGGAAAAATTAACCACATGAGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS-3UTR CAA 90 bp | GTAATCACAGCAGCCTTTATCAGAACAGCACAAGTTATTAGGAAAGCATTTTTATCTCCTTTAATGCCCTaGTCTTTCAGAGCTTTTATA | + |
|
Preference number: 5 (lower is better) Translates to: VITAAFIRTAQVIRKAFLSPLMP*SFRAFI Trigger: TATAAAAGCTCTGAAAGACAAGGGCATTAAAGGAGA...TAAAAATGCTTTCCTAATAACTTGTGCTGTTCTGATAAAGGCTGCTGTGATTAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CCA 72 bp | CGCTTCAGCACCACGAAGTCACCGTCATGGATGCAGTaGTCCCCGAGAGGCGGGGGCGGTGAGCTCGGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: RFSTTKSPSWMQ*SPRGGGGELGC Trigger: GCAGCCGAGCTCACCGCCCCCGCCTCTCGGGGACCACTGCATCCATGACGGTGACTTCGTGGTGCTGAAGCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS GCA 72 bp | CTTCTCGCTTCAGCACCACGAAGTCACCGTCATGGATaGAGTGGTCCCCGAGAGGCGGGGGCGGTGAGCTCG | + |
|
Preference number: 6 (lower is better) Translates to: LLASAPRSHRHG*SGPREAGAVSS Trigger: CGAGCTCACCGCCCCCGCCTCTCGGGGACCACTGCATCCATGACGGTGACTTCGTGGTGCTGAAGCGAGAAG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CCA 72 bp | ACATCTTCTCGCTTCAGCACCACGAAGTCACCGTCATaGATGCAGTGGTCCCCGAGAGGCGGGGGCGGTGAG | + |
|
Preference number: 6 (lower is better) Translates to: TSSRFSTTKSPS*MQWSPRGGGGE Trigger: CTCACCGCCCCCGCCTCTCGGGGACCACTGCATCCATGACGGTGACTTCGTGGTGCTGAAGCGAGAAGATGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS TCA 72 bp | GGCTGGGGTCTGCCCGAAGGCTGTCTGAGACAACAGTaGACCCTGACAGAAGGTACCCTCCACCGCCACTCA | + |
|
Preference number: 6 (lower is better) Translates to: GWGLPEGCLRQQ*TLTEGTLHRHS Trigger: TGAGTGGCGGTGGAGGGTACCTTCTGTCAGGGTTCACTGTTGTCTCAGACAGCCTTCGGGCAGACCCCAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CAA 90 bp | GCTGGCTCCTCAGCCTTGTGTGGGTCTAAAGCGCCTGTGCAGGACTaGAGGCTGGGGTCTGCCCGAAGGCTGTCTGAGACAACAGTGAAC | + |
|
Preference number: 6 (lower is better) Translates to: AGSSALCGSKAPVQD*RLGSARRLSETTVN Trigger: GTTCACTGTTGTCTCAGACAGCCTTCGGGCAGACCCCAGCCTCAAGTCCTGCACAGGCGCTTTAGACCCACACAAGGCTGAGGAGCCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS TCA 72 bp | CAGCCTTGTGTGGGTCTAAAGCGCCTGTGCAGGACTTaGGGCTGGGGTCTGCCCGAAGGCTGTCTGAGACAA | + |
|
Preference number: 6 (lower is better) Translates to: QPCVGLKRLCRT*GWGLPEGCLRQ Trigger: TTGTCTCAGACAGCCTTCGGGCAGACCCCAGCCTCAAGTCCTGCACAGGCGCTTTAGACCCACACAAGGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS TCA 72 bp | GAGCTGAAGGCTGCCTCCACTGCTCACGTCAAACGCTaGGCCGTAACTATGGCCGATGGCGTTATCCAGGTA | + |
|
Preference number: 6 (lower is better) Translates to: ELKAASTAHVKR*AVTMADGVIQV Trigger: TACCTGGATAACGCCATCGGCCATAGTTACGGCTCAGCGTTTGACGTGAGCAGTGGAGGCAGCCTTCAGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CCA 72 bp | GGGCTACAAAGTCCAGCAAAGACAGCAGCAGGGGCGTaGGGTGGAAACGACTGGCCACAATCAAACCATCTG | + |
|
Preference number: 6 (lower is better) Translates to: GLQSPAKTAAGA*GGNDWPQSNHL Trigger: CAGATGGTTTGATTGTGGCCAGTCGTTTCCACCCCACGCCCCTGCTGCTGTCTTTGCTGGACTTTGTAGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS TCA 72 bp | GTTGCCGCCCGAACGGGTCCATCTCCAGGATACAGCTaGATAATGGAGCCAAAGCCTCCCATTCGTTCCATC | + |
|
Preference number: 6 (lower is better) Translates to: VAARTGPSPGYS*IMEPKPPIRSI Trigger: GATGGAACGAATGGGAGGCTTTGGCTCCATTATTCAGCTGTATCCTGGAGATGGACCCGTTCGGGCGGCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS GCA 72 bp | CGTGGGGTGGAAACGACTGGCCACAATCAAACCATCTaGATTTCTTTCTCCCAGCAGAGCAGCAGCCTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: RGVETTGHNQTI*ISFSQQSSSLQ Trigger: CTGGAGGCTGCTGCTCTGCTGGGAGAAAGAAATGCAGATGGTTTGATTGTGGCCAGTCGTTTCCACCCCACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CCA 72 bp | GCAAAGACAGCAGCAGGGGCGTGGGGTGGAAACGACTaGCCACAATCAAACCATCTGCATTTCTTTCTCCCA | + |
|
Preference number: 6 (lower is better) Translates to: AKTAAGAWGGND*PQSNHLHFFLP Trigger: TGGGAGAAAGAAATGCAGATGGTTTGATTGTGGCCAGTCGTTTCCACCCCACGCCCCTGCTGCTGTCTTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CAA 90 bp | ATTCCAACAAAGGCTCTTTATACTGACAGTAGACCACAAACGGCCTaGACGGGGCTACAAAGTCCAGCAAAGACAGCAGCAGGGGCGTGG | + |
|
Preference number: 6 (lower is better) Translates to: IPTKALYTDSRPQTA*TGLQSPAKTAAGAW Trigger: CCACGCCCCTGCTGCTGTCTTTGCTGGACTTTGTAGCCCCGTCAAGGCCGTTTGTGGTCTACTGTCAGTATAAAGAGCCTTTGTTGGAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS TCA 72 bp | AGGCTCTTTATACTGACAGTAGACCACAAACGGCCTTaGCGGGGCTACAAAGTCCAGCAAAGACAGCAGCAG | + |
|
Preference number: 6 (lower is better) Translates to: RLFILTVDHKRP*RGYKVQQRQQQ Trigger: CTGCTGCTGTCTTTGCTGGACTTTGTAGCCCCGTCAAGGCCGTTTGTGGTCTACTGTCAGTATAAAGAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS GCA 72 bp | ACTGAGGAAAGATTTGGGAAATCCAAAACATGCTGTTaGCGCCCGAACGGGTCCATCTCCAGGATACAGCTG | + |
|
Preference number: 6 (lower is better) Translates to: TEERFGKSKTCC*RPNGSISRIQL Trigger: CAGCTGTATCCTGGAGATGGACCCGTTCGGGCGGCAACAGCATGTTTTGGATTTCCCAAATCTTTCCTCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CAA 90 bp | GCACCTAGCACCAAGCCCGAGCACGTTTCCATGACAATCATTTTATaGCCGGCACGGATATTTCCCAACGTCAACATCTGGGCTAGTGTA | + |
|
Preference number: 6 (lower is better) Translates to: APSTKPEHVSMTIIL*PARIFPNVNIWASV Trigger: TACACTAGCCCAGATGTTGACGTTGGGAAATATCCGTGCCGGCAATAAAATGATTGTCATGGAAACGTGCTCGGGCTTGGTGCTAGGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS TCA 72 bp | TATATTTCGATTATCAGTGCCTGCTTCTTTGGTCTCTaGCGCGGGCTCCTCCAGCTTCTTCCTGAGCTGAAG | + |
|
Preference number: 6 (lower is better) Translates to: YISIISACFFGL*RGLLQLLPELK Trigger: CTTCAGCTCAGGAAGAAGCTGGAGGAGCCCGCGTCAGAGACCAAAGAAGCAGGCACTGATAATCGAAATATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS TCA 72 bp | TCATGGCACCTAGCACCAAGCCCGAGCACGTTTCCATaGCAATCATTTTATTGCCGGCACGGATATTTCCCA | + |
|
Preference number: 6 (lower is better) Translates to: SWHLAPSPSTFP*QSFYCRHGYFP Trigger: TGGGAAATATCCGTGCCGGCAATAAAATGATTGTCATGGAAACGTGCTCGGGCTTGGTGCTAGGTGCCATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CCA 72 bp | TGCTCACGTCAAACGCTGAGCCGTAACTATGGCCGATaGCGTTATCCAGGTAGAACCACTGCTTTTCAAAAG | + |
|
Preference number: 6 (lower is better) Translates to: CSRQTLSRNYGR*RYPGRTTAFQK Trigger: CTTTTGAAAAGCAGTGGTTCTACCTGGATAACGCCATCGGCCATAGTTACGGCTCAGCGTTTGACGTGAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CAA 72 bp | GCTCCTTATTCTCTGGGTCCCCAGGAACAATCTCCATaGGTCTCTGTTCTCCTGAGTTGTTTTCTGCGGCAT | + |
|
Preference number: 6 (lower is better) Translates to: APYSLGPQEQSP*VSVLLSCFLRH Trigger: ATGCCGCAGAAAACAACTCAGGAGAACAGAGACCAATGGAGATTGTTCCTGGGGACCCAGAGAATAAGGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CAA 72 bp | AAGGCTCTTTATACTGACAGTAGACCACAAACGGCCTaGACGGGGCTACAAAGTCCAGCAAAGACAGCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: KALYTDSRPQTA*TGLQSPAKTAA Trigger: TGCTGCTGTCTTTGCTGGACTTTGTAGCCCCGTCAAGGCCGTTTGTGGTCTACTGTCAGTATAAAGAGCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS GCA 72 bp | GGGACTTTCCATCATCAACTATATTTCGATTATCAGTaGCTGCTTCTTTGGTCTCTGACGCGGGCTCCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: GTFHHQLYFDYQ*LLLWSLTRAPP Trigger: TGGAGGAGCCCGCGTCAGAGACCAAAGAAGCAGGCACTGATAATCGAAATATAGTTGATGATGGAAAGTCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CCA 72 bp | ACAGAAGGTACCCTCCACCGCCACTCATCAATAATTTaGGATGACTCCGATCTGGCAGAACCTGGTAATTTC | + |
|
Preference number: 6 (lower is better) Translates to: TEGTLHRHSSII*DDSDLAEPGNF Trigger: GAAATTACCAGGTTCTGCCAGATCGGAGTCATCCCAAATTATTGATGAGTGGCGGTGGAGGGTACCTTCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CAA 72 bp | TCATCAACTATATTTCGATTATCAGTGCCTGCTTCTTaGGTCTCTGACGCGGGCTCCTCCAGCTTCTTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: SSTIFRLSVPAS*VSDAGSSSFFL Trigger: CAGGAAGAAGCTGGAGGAGCCCGCGTCAGAGACCAAAGAAGCAGGCACTGATAATCGAAATATAGTTGATGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CAA 72 bp | ACCAAGCCCGAGCACGTTTCCATGACAATCATTTTATaGCCGGCACGGATATTTCCCAACGTCAACATCTGG | + |
|
Preference number: 6 (lower is better) Translates to: TKPEHVSMTIIL*PARIFPNVNIW Trigger: CCAGATGTTGACGTTGGGAAATATCCGTGCCGGCAATAAAATGATTGTCATGGAAACGTGCTCGGGCTTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS CAA 72 bp | GGCTCTGAGGACAGCATCTCAGCAGAAAATGTCCCATaGAGGAGACTGTTTACTTTGTTGAGAGGGAACTCG | + |
|
Preference number: 6 (lower is better) Translates to: GSEDSISAENVP*RRLFTLLRGNS Trigger: CGAGTTCCCTCTCAACAAAGTAAACAGTCTCCTCAATGGGACATTTTCTGCTGAGATGCTGTCCTCAGAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
||
| CDS TCA 72 bp | GTTACTTTCTTCAACTGGAGTGCTGTCTTTAGGCTCTaGGGACAGCATCTCAGCAGAAAATGTCCCATTGAG | + |
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Preference number: 6 (lower is better) Translates to: VTFFNWSAVFRL*GQHLSRKCPIE Trigger: CTCAATGGGACATTTTCTGCTGAGATGCTGTCCTCAGAGCCTAAAGACAGCACTCCAGTTGAAGAAAGTAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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| CDS CCA 72 bp | TTATTGCCGGCACGGATATTTCCCAACGTCAACATCTaGGCTAGTGTATCATATCTCATGTGGTTAATTTTT | + |
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Preference number: 6 (lower is better) Translates to: LLPARIFPNVNI*ASVSYLMWLIF Trigger: AAAAATTAACCACATGAGATATGATACACTAGCCCAGATGTTGACGTTGGGAAATATCCGTGCCGGCAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039554.7 |
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