Pregenerated sensors for TRMT112 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038812Ensembl transcript IDs: ENSMUST00000088257.14, ENSMUST00000116551.10, ENSMUST00000174786.2
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | GTACAACAGAAACACACAGTCAACAAAATACCAAAGTaGCGGCTAGCAAGGTTACGTCTCAGTCTCCTCATC | + |
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Preference number: 3 (lower is better) Translates to: VQQKHTVNKIPK*RLARLRLSLLI Trigger: GATGAGGAGACTGAGACGTAACCTTGCTAGCCGCCACTTTGGTATTTTGTTGACTGTGTGTTTCTGTTGTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174786.2 |
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| CDS-3UTR GCA 90 bp | ACAGACCGTACAACAGAAACACACAGTCAACAAAATACCAAAGTGGCGGCTAGCGCGGGAAGCCACGCGTaGCCACGCCCCGCACATGGG | + |
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Preference number: 4 (lower is better) Translates to: TDRTTETHSQQNTKVAASAGSHA*PRPAHG Trigger: CCCATGTGCGGGGCGTGGGCACGCGTGGCTTCCCGC...GCTAGCCGCCACTTTGGTATTTTGTTGACTGTGTGTTTCTGTTGTACGGTCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000088257.14 ENSMUST00000116551.10 ENSMUST00000174786.2 |
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| CDS-3UTR GCA 90 bp | CAGACCGTACAACAGAAACACACAGTCAACAAAATACCAAAGTGGCGGCTAGCAGCGGGAAGCCACGCGTaGCCACGCCCCGCACATGGG | + |
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Preference number: 4 (lower is better) Translates to: QTVQQKHTVNKIPKWRLAAGSHA*PRPAHG Trigger: CCCATGTGCGGGGCGTGGGCACGCGTGGCTTCCCGC...TGCTAGCCGCCACTTTGGTATTTTGTTGACTGTGTGTTTCTGTTGTACGGTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000088257.14 ENSMUST00000116551.10 ENSMUST00000174786.2 |
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| CDS-3UTR GCA 90 bp | GACCGTACAACAGAAACACACAGTCAACAAAATACCAAAGTGGCGGCTAGCAAGCGGACCTCAGTGGCCTaGAGGCGCAGCGGGAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: DRTTETHSQQNTKVAASKRTSVA*RRSGKP Trigger: TGGCTTCCCGCTGCGCCTGCAGGCCACTGAGGTCCG...CTTGCTAGCCGCCACTTTGGTATTTTGTTGACTGTGTGTTTCTGTTGTACGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088257.14 ENSMUST00000116551.10 ENSMUST00000174786.2 |
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| CDS-3UTR GCA 90 bp | CAGACCGTACAACAGAAACACACAGTCAACAAAATACCAAAGTGGCGGCTAGCACGGACCTCAGTGGCCTaGAGGCGCAGCGGGAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: QTVQQKHTVNKIPKWRLARTSVA*RRSGKP Trigger: TGGCTTCCCGCTGCGCCTGCAGGCCACTGAGGTCCG...TGCTAGCCGCCACTTTGGTATTTTGTTGACTGTGTGTTTCTGTTGTACGGTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088257.14 ENSMUST00000116551.10 ENSMUST00000174786.2 |
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| CDS-3UTR CCA 90 bp | GACCGTACAACAGAAACACACAGTCAACAAAATACCAAAGTGGCGGCTAGCAAGCCTCAGTGGGAGGTCTaGGCAGGCGATGCCCAAGGA | + |
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Preference number: 4 (lower is better) Translates to: DRTTETHSQQNTKVAASKPQWEV*AGDAQG Trigger: TCCTTGGGCATCGCCTGCCCAGACCTCCCACTGAGG...CTTGCTAGCCGCCACTTTGGTATTTTGTTGACTGTGTGTTTCTGTTGTACGGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174786.2 |
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| CDS-3UTR GCA 90 bp | CGTCTATTTAACAGACCGTACAACAGAAACACACAGTCAACAAAATACCAAAGTCGGACCTCAGTGGCCTaGAGGCGCAGCGGGAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: RLFNRPYNRNTQSTKYQSRTSVA*RRSGKP Trigger: TGGCTTCCCGCTGCGCCTGCAGGCCACTGAGGTCCG...ACTTTGGTATTTTGTTGACTGTGTGTTTCTGTTGTACGGTCTGTTAAATAGACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088257.14 ENSMUST00000116551.10 ENSMUST00000174786.2 |
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| CDS-3UTR GCA 90 bp | TTTAACAGACCGTACAACAGAAACACACAGTCAACAAAATACCAAAGTGGCGGCCTGGGCATTGCAGGGTaGCCTCCAGTACATCAACCT | + |
|
Preference number: 4 (lower is better) Translates to: FNRPYNRNTQSTKYQSGGLGIAG*PPVHQP Trigger: AGGTTGATGTACTGGAGGGCACCCTGCAATGCCCAG...GCCGCCACTTTGGTATTTTGTTGACTGTGTGTTTCTGTTGTACGGTCTGTTAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088257.14 ENSMUST00000116551.10 |
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| CDS-3UTR GCA 90 bp | GTCTATTTAACAGACCGTACAACAGAAACACACAGTCAACAAAATACCAAAGTGCTGGGCATTGCAGGGTaGCCTCCAGTACATCAACCT | + |
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Preference number: 4 (lower is better) Translates to: VYLTDRTTETHSQQNTKVLGIAG*PPVHQP Trigger: AGGTTGATGTACTGGAGGGCACCCTGCAATGCCCAG...CACTTTGGTATTTTGTTGACTGTGTGTTTCTGTTGTACGGTCTGTTAAATAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088257.14 ENSMUST00000116551.10 |
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| CDS GCA 72 bp | GCACCGGTAGCCTCAGTGGGAGGTCTGGGCAGGCGATaGCCAAGGATTCTCACCTCAAGCAACACGTGGTGC | + |
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Preference number: 6 (lower is better) Translates to: APVASVGGLGRR*PRILTSSNTWC Trigger: GCACCACGTGTTGCTTGAGGTGAGAATCCTTGGGCATCGCCTGCCCAGACCTCCCACTGAGGCTACCGGTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174786.2 |
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| CDS GCA 72 bp | TTGGGTACCTCGGCCAAGTTTAAGGTGTCCGCTGCCTaGACAAGCGCCGCCCACTCCACTTTGGGGATCATC | + |
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Preference number: 6 (lower is better) Translates to: LGTSAKFKVSAA*TSAAHSTLGII Trigger: GATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACCTTAAACTTGGCCGAGGTACCCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000088257.14 ENSMUST00000116551.10 ENSMUST00000174786.2 |
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