Pregenerated sensors for TRMT10B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035601Ensembl transcript IDs: ENSMUST00000044673.9, ENSMUST00000107800.3, ENSMUST00000144781.3
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGATAGCATGTAGAGGCAAGTGTGTGCCATTGCCACACTTTGCCTaGTCCTTTGGTCAAGACACCTCTGGCACTTCACCCCCTGCAGCT | + |
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Preference number: 1 (lower is better) Translates to: EIACRGKCVPLPHFA*SFGQDTSGTSPPAA Trigger: AGCTGCAGGGGGTGAAGTGCCAGAGGTGTCTTGACCAAAGGACCAGGCAAAGTGTGGCAATGGCACACACTTGCCTCTACATGCTATCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR CCA 90 bp | TCAGTCAGACCTCTGAGAATGAGTTATGGACCCCTGAAGCCTATGTaGCCCAGTCCCTTAAAGGGCTTCCCTGAGGCCTTGCCTATCCTG | + |
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Preference number: 1 (lower is better) Translates to: SVRPLRMSYGPLKPM*PSPLKGFPEALPIL Trigger: CAGGATAGGCAAGGCCTCAGGGAAGCCCTTTAAGGGACTGGGCCACATAGGCTTCAGGGGTCCATAACTCATTCTCAGAGGTCTGACTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR TCA 90 bp | TGGACCCCTGAAGCCTATGTGGCCCAGTCCCTTAAAGGGCTTCCCTaGGGCCTTGCCTATCCTGCAATAAGAGTAACACAGAAGGTGGAT | + |
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Preference number: 1 (lower is better) Translates to: WTPEAYVAQSLKGLP*GLAYPAIRVTQKVD Trigger: ATCCACCTTCTGTGTTACTCTTATTGCAGGATAGGCAAGGCCTCAGGGAAGCCCTTTAAGGGACTGGGCCACATAGGCTTCAGGGGTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR CAA 90 bp | CATGTAGAGGCAAGTGTGTGCCATTGCCACACTTTGCCTGGTCCTTaGGTCAAGACACCTCTGGCACTTCACCCCCTGCAGCTGGAATCT | + |
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Preference number: 2 (lower is better) Translates to: HVEASVCHCHTLPGP*VKTPLALHPLQLES Trigger: AGATTCCAGCTGCAGGGGGTGAAGTGCCAGAGGTGTCTTGACCAAAGGACCAGGCAAAGTGTGGCAATGGCACACACTTGCCTCTACATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR-3UTR GCA 90 bp | GCTTCCCTGAGGCCTTGCCTATCCTGCAATAAGAGTAACACAGAAGGTGGATCATGGCACTTCACCCCCTaGAGCTGGAATCTTAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: ASLRPCLSCNKSNTEGGSWHFTP*SWNLRL Trigger: CAGCCTAAGATTCCAGCTGCAGGGGGTGAAGTGCCA...TGATCCACCTTCTGTGTTACTCTTATTGCAGGATAGGCAAGGCCTCAGGGAAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR CAA 90 bp | GGCTTTCAAAGATCCGAGATAGCATGTAGAGGCAAGTGTGTGCCATaGCCACACTTTGCCTGGTCCTTTGGTCAAGACACCTCTGGCACT | + |
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Preference number: 2 (lower is better) Translates to: GFQRSEIACRGKCVP*PHFAWSFGQDTSGT Trigger: AGTGCCAGAGGTGTCTTGACCAAAGGACCAGGCAAAGTGTGGCAATGGCACACACTTGCCTCTACATGCTATCTCGGATCTTTGAAAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR-3UTR CCA 90 bp | GCTTCCCTGAGGCCTTGCCTATCCTGCAATAAGAGTAACACAGAAGGTGGATCATTGCCACACTTTGCCTaGTCCTTTGGTCAAGACACC | + |
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Preference number: 2 (lower is better) Translates to: ASLRPCLSCNKSNTEGGSLPHFA*SFGQDT Trigger: GGTGTCTTGACCAAAGGACCAGGCAAAGTGTGGCAA...TGATCCACCTTCTGTGTTACTCTTATTGCAGGATAGGCAAGGCCTCAGGGAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR-3UTR GCA 90 bp | CTCCATGACTATAGTCAGAACAAGAACAGGGTGAGAGCCACAGGAAAGAACCAAGCCATTGCCACACTTTaGCTGGTCCTTTGGTCAAGA | + |
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Preference number: 2 (lower is better) Translates to: LHDYSQNKNRVRATGKNQAIATL*LVLWSR Trigger: TCTTGACCAAAGGACCAGGCAAAGTGTGGCAATGGC...TTGGTTCTTTCCTGTGGCTCTCACCCTGTTCTTGTTCTGACTATAGTCATGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR-3UTR GCA 90 bp | CTCCATGACTATAGTCAGAACAAGAACAGGGTGAGAGCCACAGGAAAGAACCAAGACAGCAGAGCTTGTTaGAGCATATGTCTGAGCTGG | + |
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Preference number: 2 (lower is better) Translates to: LHDYSQNKNRVRATGKNQDSRAC*SICLSW Trigger: CCAGCTCAGACATATGCTGCAACAAGCTCTGCTGTC...TTGGTTCTTTCCTGTGGCTCTCACCCTGTTCTTGTTCTGACTATAGTCATGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR-3UTR CAA 90 bp | AGTAGTGCGGGCCAGGCGGGGCTAGGACAGCAGAGCTTGTTGCAGCATATGTCTTGCCATTGCCACACTTaGCCTGGTCCTTTGGTCAAG | + |
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Preference number: 3 (lower is better) Translates to: SSAGQAGLGQQSLLQHMSCHCHT*PGPLVK Trigger: CTTGACCAAAGGACCAGGCAAAGTGTGGCAATGGCA...AGACATATGCTGCAACAAGCTCTGCTGTCCTAGCCCCGCCTGGCCCGCACTACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR CCA 72 bp | CCTCTGAGAATGAGTTATGGACCCCTGAAGCCTATGTaGCCCAGTCCCTTAAAGGGCTTCCCTGAGGCCTTG | + |
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Preference number: 3 (lower is better) Translates to: PLRMSYGPLKPM*PSPLKGFPEAL Trigger: CAAGGCCTCAGGGAAGCCCTTTAAGGGACTGGGCCACATAGGCTTCAGGGGTCCATAACTCATTCTCAGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR CCA 72 bp | TGTAGAGGCAAGTGTGTGCCATTGCCACACTTTGCCTaGTCCTTTGGTCAAGACACCTCTGGCACTTCACCC | + |
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Preference number: 3 (lower is better) Translates to: CRGKCVPLPHFA*SFGQDTSGTSP Trigger: GGGTGAAGTGCCAGAGGTGTCTTGACCAAAGGACCAGGCAAAGTGTGGCAATGGCACACACTTGCCTCTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR-3UTR CAA 90 bp | GCTTCCCTGAGGCCTTGCCTATCCTGCAATAAGAGTAACACAGAAGGTGGATCAGGCAAGTGTGTGCCATaGCCACACTTTGCCTGGTCC | + |
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Preference number: 3 (lower is better) Translates to: ASLRPCLSCNKSNTEGGSGKCVP*PHFAWS Trigger: GGACCAGGCAAAGTGTGGCAATGGCACACACTTGCC...TGATCCACCTTCTGTGTTACTCTTATTGCAGGATAGGCAAGGCCTCAGGGAAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR TCA 72 bp | CACAGGGAAAAGTGTAGGCTGGCAGGTGGTAAGAGCTaGGGGGTTCTCAGTTCAGTCAGACCTCTGAGAATG | + |
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Preference number: 3 (lower is better) Translates to: HREKCRLAGGKS*GVLSSVRPLRM Trigger: CATTCTCAGAGGTCTGACTGAACTGAGAACCCCTCAGCTCTTACCACCTGCCAGCCTACACTTTTCCCTGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR TCA 72 bp | GGGGCTAGGACAGCAGAGCTTGTTGCAGCATATGTCTaGGCTGGTGGAAATCGGCACATTTCAGGTGACAAA | + |
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Preference number: 3 (lower is better) Translates to: GARTAELVAAYV*AGGNRHISGDK Trigger: TTTGTCACCTGAAATGTGCCGATTTCCACCAGCTCAGACATATGCTGCAACAAGCTCTGCTGTCCTAGCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR-3UTR CAA 90 bp | GCTTCCCTGAGGCCTTGCCTATCCTGCAATAAGAGTAACACAGAAGGTGGATCAACTTGGGGTATATATTaGTCCAGAGCACTTGGCTTG | + |
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Preference number: 3 (lower is better) Translates to: ASLRPCLSCNKSNTEGGSTWGIY*SRALGL Trigger: CAAGCCAAGTGCTCTGGACAAATATATACCCCAAGT...TGATCCACCTTCTGTGTTACTCTTATTGCAGGATAGGCAAGGCCTCAGGGAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR CAA 72 bp | AGTGCGGGCCAGGCGGGGCTAGGACAGCAGAGCTTGTaGCAGCATATGTCTGAGCTGGTGGAAATCGGCACA | + |
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Preference number: 4 (lower is better) Translates to: SAGQAGLGQQSL*QHMSELVEIGT Trigger: TGTGCCGATTTCCACCAGCTCAGACATATGCTGCAACAAGCTCTGCTGTCCTAGCCCCGCCTGGCCCGCACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR CAA 72 bp | AGTAGTGCGGGCCAGGCGGGGCTAGGACAGCAGAGCTaGTTGCAGCATATGTCTGAGCTGGTGGAAATCGGC | + |
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Preference number: 4 (lower is better) Translates to: SSAGQAGLGQQS*LQHMSELVEIG Trigger: GCCGATTTCCACCAGCTCAGACATATGCTGCAACAAGCTCTGCTGTCCTAGCCCCGCCTGGCCCGCACTACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR CAA 72 bp | GCAAGTGTGTGCCATTGCCACACTTTGCCTGGTCCTTaGGTCAAGACACCTCTGGCACTTCACCCCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: ASVCHCHTLPGP*VKTPLALHPLQ Trigger: CTGCAGGGGGTGAAGTGCCAGAGGTGTCTTGACCAAAGGACCAGGCAAAGTGTGGCAATGGCACACACTTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR CCA 90 bp | GCTTCCCTGAGGCCTTGCCTATCCTGCAATAAGAGTAACACAGAAGGTGGATCAGCGTTTGCTGTGCTGTaGGCAGGTGCCGTTACCGGG | + |
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Preference number: 4 (lower is better) Translates to: ASLRPCLSCNKSNTEGGSAFAVL*AGAVTG Trigger: CCCGGTAACGGCACCTGCCCACAGCACAGCAAACGC...TGATCCACCTTCTGTGTTACTCTTATTGCAGGATAGGCAAGGCCTCAGGGAAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR CCA 90 bp | AGTAGTGCGGGCCAGGCGGGGCTAGGACAGCAGAGCTTGTTGCAGCATATGTCTCATGTATTCCTGGATTaGCAAGCGGGCTGTCTTGAC | + |
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Preference number: 4 (lower is better) Translates to: SSAGQAGLGQQSLLQHMSHVFLD*QAGCLD Trigger: GTCAAGACAGCCCGCTTGCCAATCCAGGAATACATG...AGACATATGCTGCAACAAGCTCTGCTGTCCTAGCCCCGCCTGGCCCGCACTACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR GCA 90 bp | AGTAGTGCGGGCCAGGCGGGGCTAGGACAGCAGAGCTTGTTGCAGCATATGTCTTACTCCACATCCACCTaGAGAAGCTGGAAGCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: SSAGQAGLGQQSLLQHMSYSTST*RSWKLS Trigger: TGAAAGCTTCCAGCTTCTGCAGGTGGATGTGGAGTA...AGACATATGCTGCAACAAGCTCTGCTGTCCTAGCCCCGCCTGGCCCGCACTACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR CCA 90 bp | AGTAGTGCGGGCCAGGCGGGGCTAGGACAGCAGAGCTTGTTGCAGCATATGTCTTTGATCATGTATTCCTaGATTGGCAAGCGGGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: SSAGQAGLGQQSLLQHMSLIMYS*IGKRAV Trigger: GACAGCCCGCTTGCCAATCCAGGAATACATGATCAA...AGACATATGCTGCAACAAGCTCTGCTGTCCTAGCCCCGCCTGGCCCGCACTACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR TCA 90 bp | CTCCATGACTATAGTCAGAACAAGAACAGGGTGAGAGCCACAGGAAAGAACCAAAGTCCGTCTGGTTCCTaGAAGGCCTGTGAGTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: LHDYSQNKNRVRATGKNQSPSGS*KACESV Trigger: AACAGACTCACAGGCCTTTCAGGAACCAGACGGACT...TTGGTTCTTTCCTGTGGCTCTCACCCTGTTCTTGTTCTGACTATAGTCATGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR TCA 90 bp | GCTTCCCTGAGGCCTTGCCTATCCTGCAATAAGAGTAACACAGAAGGTGGATCACCTTTTGCTCTTCTTTaGGGAGACTATCCTTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: ASLRPCLSCNKSNTEGGSPFALL*GDYPFP Trigger: TGGGAAAGGATAGTCTCCTCAAAGAAGAGCAAAAGG...TGATCCACCTTCTGTGTTACTCTTATTGCAGGATAGGCAAGGCCTCAGGGAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR TCA 90 bp | GCTCAGGTTTTGGATAAAGAGGAGTGTTTAGAGTTGGAGGAAGATTCTGTGCTAGAGGGGGCTGGCAGTTaGGAATCCAGTAAGGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: AQVLDKEECLELEEDSVLEGAGS*ESSKAD Trigger: ATCTGCCTTACTGGATTCTCAACTGCCAGCCCCCTC...TAGCACAGAATCTTCCTCCAACTCTAAACACTCCTCTTTATCCAAAACCTGAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR TCA 90 bp | GCTTCCCTGAGGCCTTGCCTATCCTGCAATAAGAGTAACACAGAAGGTGGATCATCTCATTCTGGCGCTTaGTCATGTATTCCTGGATTG | + |
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Preference number: 4 (lower is better) Translates to: ASLRPCLSCNKSNTEGGSSHSGA*SCIPGL Trigger: CAATCCAGGAATACATGATCAAGCGCCAGAATGAGA...TGATCCACCTTCTGTGTTACTCTTATTGCAGGATAGGCAAGGCCTCAGGGAAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR GCA 90 bp | ATTCCCACAATCTTAAAAACCTACGAGCTCAGGTTTTGGATAAAGAGGAGTGTTGTTACCGGGGTCTTCTaGACGCTTGGCTTTCCTTCG | + |
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Preference number: 4 (lower is better) Translates to: IPTILKTYELRFWIKRSVVTGVF*TLGFPS Trigger: CGAAGGAAAGCCAAGCGTGCAGAAGACCCCGGTAAC...AACACTCCTCTTTATCCAAAACCTGAGCTCGTAGGTTTTTAAGATTGTGGGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR GCA 90 bp | CTCCATGACTATAGTCAGAACAAGAACAGGGTGAGAGCCACAGGAAAGAACCAATGTCTCTGTTTTCTTTaGATGTTTTTCGAGCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: LHDYSQNKNRVRATGKNQCLCFL*MFFELH Trigger: GTGGAGCTCGAAAAACATGCAAAGAAAACAGAGACA...TTGGTTCTTTCCTGTGGCTCTCACCCTGTTCTTGTTCTGACTATAGTCATGGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR GCA 90 bp | TCTAAGCTCAAGGCTACACAAAGCTATTTACAAAGACTAGAGGAGAGGAGCCCTTCACCTTCTTCTGAATaGTCTCATCTACAAGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: SKLKATQSYLQRLEERSPSPSSE*SHLQVH Trigger: GTGGACTTGTAGATGAGAGCATTCAGAAGAAGGTGA...AGGGCTCCTCTCCTCTAGTCTTTGTAAATAGCTTTGTGTAGCCTTGAGCTTAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR TCA 90 bp | GCTCAGGTTTTGGATAAAGAGGAGTGTTTAGAGTTGGAGGAAGATTCTGTGCTAAATGTCACCTTCTTCTaGATGCTCTCATCTACAAGT | + |
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Preference number: 4 (lower is better) Translates to: AQVLDKEECLELEEDSVLNVTFF*MLSSTS Trigger: ACTTGTAGATGAGAGCATTCAGAAGAAGGTGACATT...TAGCACAGAATCTTCCTCCAACTCTAAACACTCCTCTTTATCCAAAACCTGAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR CCA 90 bp | GCTCAGGTTTTGGATAAAGAGGAGTGTTTAGAGTTGGAGGAAGATTCTGTGCTACCAAAAGTTTCTCTTTaGTTAAGGCTTTCAAAAAGC | + |
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Preference number: 4 (lower is better) Translates to: AQVLDKEECLELEEDSVLPKVSL*LRLSKS Trigger: GCTTTTTGAAAGCCTTAACCAAAGAGAAACTTTTGG...TAGCACAGAATCTTCCTCCAACTCTAAACACTCCTCTTTATCCAAAACCTGAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| 3UTR CAA 72 bp | TTAACTTGGGGTATATATTTGTCCAGAGCACTTGGCTaGTCTAAGCTCAAGGCTACACAAAGCTATTTACAA | + |
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Preference number: 4 (lower is better) Translates to: LTWGIYLSRALG*SKLKATQSYLQ Trigger: TTGTAAATAGCTTTGTGTAGCCTTGAGCTTAGACAAGCCAAGTGCTCTGGACAAATATATACCCCAAGTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS GCA 90 bp | TTTGCAGGGCTGGTCTCTTCTGGGCGCTCGTACTCCACATCCACCTaGAGAAGCTGGAAGCTTTCAGAGAGTCCATCTTCACCTCCGGCC | + |
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Preference number: 5 (lower is better) Translates to: FAGLVSSGRSYSTST*RSWKLSESPSSPPA Trigger: GGCCGGAGGTGAAGATGGACTCTCTGAAAGCTTCCAGCTTCTGCAGGTGGATGTGGAGTACGAGCGCCCAGAAGAGACCAGCCCTGCAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044673.9 ENSMUST00000107800.3 ENSMUST00000144781.3 |
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| CDS-3UTR CAA 90 bp | AGTAGTGCGGGCCAGGCGGGGCTAGGACAGCAGAGCTTGTTGCAGCATATGTCTGGGTCTTCTGCACGCTaGGCTTTCCTTCGTTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: SSAGQAGLGQQSLLQHMSGSSAR*AFLRSL Trigger: AAGAGAACGAAGGAAAGCCAAGCGTGCAGAAGACCC...AGACATATGCTGCAACAAGCTCTGCTGTCCTAGCCCCGCCTGGCCCGCACTACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS CCA 90 bp | TGCTGTGCTGTGGGCAGGTGCCGTTACCGGGGTCTTCTGCACGCTTaGCTTTCCTTCGTTCTCTTTCCTGCTTCCTTTTGCTCTTCTTTG | + |
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Preference number: 5 (lower is better) Translates to: CCAVGRCRYRGLLHA*LSFVLFPASFCSSL Trigger: CAAAGAAGAGCAAAAGGAAGCAGGAAAGAGAACGAAGGAAAGCCAAGCGTGCAGAAGACCCCGGTAACGGCACCTGCCCACAGCACAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044673.9 ENSMUST00000144781.3 |
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| CDS CCA 90 bp | AGCGTTTGCTGTGCTGTGGGCAGGTGCCGGGGTCTTCTGCACGCTTaGCTTTCCTTCGTTCTCTTTCCTGCTTCCTTTTGCTCTTCTTTG | + |
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Preference number: 5 (lower is better) Translates to: SVCCAVGRCRGLLHA*LSFVLFPASFCSSL Trigger: CAAAGAAGAGCAAAAGGAAGCAGGAAAGAGAACGAAGGAAAGCCAAGCGTGCAGAAGACCCCGGCACCTGCCCACAGCACAGCAAACGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107800.3 |
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| CDS GCA 90 bp | TCTCTGTTTTCTTTGCATGTTTTTCGAGCTCCACACGGCACTGTTTaGAGGGCTGGTCTCTTCTGGGCGCTCGTACTCCACATCCACCTG | + |
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Preference number: 5 (lower is better) Translates to: SLFSLHVFRAPHGTV*RAGLFWALVLHIHL Trigger: CAGGTGGATGTGGAGTACGAGCGCCCAGAAGAGACCAGCCCTGCAAACAGTGCCGTGTGGAGCTCGAAAAACATGCAAAGAAAACAGAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000044673.9 ENSMUST00000107800.3 ENSMUST00000144781.3 |
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| CDS GCA 90 bp | CTTTGGTTAAGGCTTTCAAAAAGCGTTTGCTGTGCTGTGGGCAGGTaGCGTTACCGGGGTCTTCTGCACGCTTGGCTTTCCTTCGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: LWLRLSKSVCCAVGR*RYRGLLHAWLSFVL Trigger: GAGAACGAAGGAAAGCCAAGCGTGCAGAAGACCCCGGTAACGGCACCTGCCCACAGCACAGCAAACGCTTTTTGAAAGCCTTAACCAAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000044673.9 ENSMUST00000144781.3 |
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| CDS GCA 90 bp | CTTTGGTTAAGGCTTTCAAAAAGCGTTTGCTGTGCTGTGGGCAGGTaGCGGGGTCTTCTGCACGCTTGGCTTTCCTTCGTTCTCTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: LWLRLSKSVCCAVGR*RGLLHAWLSFVLFP Trigger: AGGAAAGAGAACGAAGGAAAGCCAAGCGTGCAGAAGACCCCGGCACCTGCCCACAGCACAGCAAACGCTTTTTGAAAGCCTTAACCAAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107800.3 |
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| CDS-3UTR CAA 90 bp | CTCCATGACTATAGTCAGAACAAGAACAGGGTGAGAGCCACAGGAAAGAACCAAGCTTTCAAAAAGCGTTaGCTGTGCTGTGGGCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: LHDYSQNKNRVRATGKNQAFKKR*LCCGQV Trigger: CACCTGCCCACAGCACAGCAAACGCTTTTTGAAAGC...TTGGTTCTTTCCTGTGGCTCTCACCCTGTTCTTGTTCTGACTATAGTCATGGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR CAA 90 bp | GCTTCCCTGAGGCCTTGCCTATCCTGCAATAAGAGTAACACAGAAGGTGGATCAGGCCTGCTGGCTTTTTaGTTCGAACCATACAACCTT | + |
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Preference number: 5 (lower is better) Translates to: ASLRPCLSCNKSNTEGGSGLLAF*FEPYNL Trigger: AAGGTTGTATGGTTCGAACAAAAAAGCCAGCAGGCC...TGATCCACCTTCTGTGTTACTCTTATTGCAGGATAGGCAAGGCCTCAGGGAAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR CAA 90 bp | GCTCAGGTTTTGGATAAAGAGGAGTGTTTAGAGTTGGAGGAAGATTCTGTGCTAGGCAAGCGGGCTGTCTaGACAGAGTATTCTCGGGCT | + |
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Preference number: 5 (lower is better) Translates to: AQVLDKEECLELEEDSVLGKRAV*TEYSRA Trigger: AGCCCGAGAATACTCTGTCAAGACAGCCCGCTTGCC...TAGCACAGAATCTTCCTCCAACTCTAAACACTCCTCTTTATCCAAAACCTGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS CCA 90 bp | ATGGTAGTTTTTCTCATTCTGGCGCTTGATCATGTATTCCTGGATTaGCAAGCGGGCTGTCTTGACAGAGTATTCTCGGGCTTTTTGAAA | + |
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Preference number: 5 (lower is better) Translates to: MVVFLILALDHVFLD*QAGCLDRVFSGFLK Trigger: TTTCAAAAAGCCCGAGAATACTCTGTCAAGACAGCCCGCTTGCCAATCCAGGAATACATGATCAAGCGCCAGAATGAGAAAAACTACCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000044673.9 ENSMUST00000107800.3 |
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| CDS-3UTR CAA 90 bp | TCTAAGCTCAAGGCTACACAAAGCTATTTACAAAGACTAGAGGAGAGGAGCCCTTACTCAATTCCTTCTTaGACATGTGCTGGGTCATGC | + |
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Preference number: 5 (lower is better) Translates to: SKLKATQSYLQRLEERSPYSIPS*TCAGSC Trigger: GCATGACCCAGCACATGTCAAAGAAGGAATTGAGTA...AGGGCTCCTCTCCTCTAGTCTTTGTAAATAGCTTTGTGTAGCCTTGAGCTTAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR CAA 90 bp | TCTAAGCTCAAGGCTACACAAAGCTATTTACAAAGACTAGAGGAGAGGAGCCCTGTGTCTCTGTTTTCTTaGCATGTTTTTCGAGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: SKLKATQSYLQRLEERSPVSLFS*HVFRAP Trigger: TGGAGCTCGAAAAACATGCAAAGAAAACAGAGACAC...AGGGCTCCTCTCCTCTAGTCTTTGTAAATAGCTTTGTGTAGCCTTGAGCTTAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR CAA 90 bp | ATTCCCACAATCTTAAAAACCTACGAGCTCAGGTTTTGGATAAAGAGGAGTGTTTCCTTTTGCTCTTCTTaGAGGAGACTATCCTTTCCC | + |
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Preference number: 5 (lower is better) Translates to: IPTILKTYELRFWIKRSVSFCSS*RRLSFP Trigger: GGGAAAGGATAGTCTCCTCAAAGAAGAGCAAAAGGA...AACACTCCTCTTTATCCAAAACCTGAGCTCGTAGGTTTTTAAGATTGTGGGAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS-3UTR CAA 90 bp | ATTCCCACAATCTTAAAAACCTACGAGCTCAGGTTTTGGATAAAGAGGAGTGTTAGTCAACACATAGTCTaGGTCCTGAGTGTTTGGCTT | + |
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Preference number: 5 (lower is better) Translates to: IPTILKTYELRFWIKRSVSQHIV*VLSVWL Trigger: AAGCCAAACACTCAGGACCAAGACTATGTGTTGACT...AACACTCCTCTTTATCCAAAACCTGAGCTCGTAGGTTTTTAAGATTGTGGGAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044673.9 |
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| CDS GCA 72 bp | AGGCTTTCAAAAAGCGTTTGCTGTGCTGTGGGCAGGTaGCGTTACCGGGGTCTTCTGCACGCTTGGCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: RLSKSVCCAVGR*RYRGLLHAWLS Trigger: GGAAAGCCAAGCGTGCAGAAGACCCCGGTAACGGCACCTGCCCACAGCACAGCAAACGCTTTTTGAAAGCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000044673.9 ENSMUST00000144781.3 |
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| CDS CCA 72 bp | GTGGGCAGGTGCCGTTACCGGGGTCTTCTGCACGCTTaGCTTTCCTTCGTTCTCTTTCCTGCTTCCTTTTGC | + |
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Preference number: 6 (lower is better) Translates to: VGRCRYRGLLHA*LSFVLFPASFC Trigger: GCAAAAGGAAGCAGGAAAGAGAACGAAGGAAAGCCAAGCGTGCAGAAGACCCCGGTAACGGCACCTGCCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044673.9 ENSMUST00000144781.3 |
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| CDS CCA 72 bp | TGTGCTGTGGGCAGGTGCCGGGGTCTTCTGCACGCTTaGCTTTCCTTCGTTCTCTTTCCTGCTTCCTTTTGC | + |
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Preference number: 6 (lower is better) Translates to: CAVGRCRGLLHA*LSFVLFPASFC Trigger: GCAAAAGGAAGCAGGAAAGAGAACGAAGGAAAGCCAAGCGTGCAGAAGACCCCGGCACCTGCCCACAGCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107800.3 |
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| CDS GCA 72 bp | AGGCTTTCAAAAAGCGTTTGCTGTGCTGTGGGCAGGTaGCGGGGTCTTCTGCACGCTTGGCTTTCCTTCGTT | + |
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Preference number: 6 (lower is better) Translates to: RLSKSVCCAVGR*RGLLHAWLSFV Trigger: AACGAAGGAAAGCCAAGCGTGCAGAAGACCCCGGCACCTGCCCACAGCACAGCAAACGCTTTTTGAAAGCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107800.3 |
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| CDS CAA 72 bp | TGTGGGCAGGTGCCGTTACCGGGGTCTTCTGCACGCTaGGCTTTCCTTCGTTCTCTTTCCTGCTTCCTTTTG | + |
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Preference number: 6 (lower is better) Translates to: CGQVPLPGSSAR*AFLRSLSCFLL Trigger: CAAAAGGAAGCAGGAAAGAGAACGAAGGAAAGCCAAGCGTGCAGAAGACCCCGGTAACGGCACCTGCCCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044673.9 ENSMUST00000144781.3 |
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| CDS GCA 72 bp | CTGGTCTCTTCTGGGCGCTCGTACTCCACATCCACCTaGAGAAGCTGGAAGCTTTCAGAGAGTCCATCTTCA | + |
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Preference number: 6 (lower is better) Translates to: LVSSGRSYSTST*RSWKLSESPSS Trigger: TGAAGATGGACTCTCTGAAAGCTTCCAGCTTCTGCAGGTGGATGTGGAGTACGAGCGCCCAGAAGAGACCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044673.9 ENSMUST00000107800.3 ENSMUST00000144781.3 |
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| CDS CAA 72 bp | TTCTTTGCATGTTTTTCGAGCTCCACACGGCACTGTTaGCAGGGCTGGTCTCTTCTGGGCGCTCGTACTCCA | + |
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Preference number: 6 (lower is better) Translates to: FFACFSSSTRHC*QGWSLLGARTP Trigger: TGGAGTACGAGCGCCCAGAAGAGACCAGCCCTGCAAACAGTGCCGTGTGGAGCTCGAAAAACATGCAAAGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044673.9 ENSMUST00000107800.3 ENSMUST00000144781.3 |
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| CDS CAA 90 bp | TTGCTGTGCTGTGGGCAGGTGCCGTTACCGGGGTCTTCTGCACGCTaGGCTTTCCTTCGTTCTCTTTCCTGCTTCCTTTTGCTCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: LLCCGQVPLPGSSAR*AFLRSLSCFLLLFF Trigger: AAAGAAGAGCAAAAGGAAGCAGGAAAGAGAACGAAGGAAAGCCAAGCGTGCAGAAGACCCCGGTAACGGCACCTGCCCACAGCACAGCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044673.9 ENSMUST00000144781.3 |
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| CDS CAA 90 bp | AAGCGTTTGCTGTGCTGTGGGCAGGTGCCGGGGTCTTCTGCACGCTaGGCTTTCCTTCGTTCTCTTTCCTGCTTCCTTTTGCTCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: KRLLCCGQVPGSSAR*AFLRSLSCFLLLFF Trigger: AAAGAAGAGCAAAAGGAAGCAGGAAAGAGAACGAAGGAAAGCCAAGCGTGCAGAAGACCCCGGCACCTGCCCACAGCACAGCAAACGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107800.3 |
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| CDS GCA 72 bp | TTCTCTTTGGTTAAGGCTTTCAAAAAGCGTTTGCTGTaGTGTGGGCAGGTGCCGGGGTCTTCTGCACGCTTG | + |
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Preference number: 6 (lower is better) Translates to: FSLVKAFKKRLL*CGQVPGSSARL Trigger: CAAGCGTGCAGAAGACCCCGGCACCTGCCCACAGCACAGCAAACGCTTTTTGAAAGCCTTAACCAAAGAGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107800.3 |
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| CDS GCA 72 bp | TTCTCTTTGGTTAAGGCTTTCAAAAAGCGTTTGCTGTaGTGTGGGCAGGTGCCGTTACCGGGGTCTTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: FSLVKAFKKRLL*CGQVPLPGSSA Trigger: TGCAGAAGACCCCGGTAACGGCACCTGCCCACAGCACAGCAAACGCTTTTTGAAAGCCTTAACCAAAGAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000044673.9 ENSMUST00000144781.3 |
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| CDS GCA 72 bp | AAAGTTTCTCTTTGGTTAAGGCTTTCAAAAAGCGTTTaGTGTGCTGTGGGCAGGTGCCGGGGTCTTCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: KVSLWLRLSKSV*CAVGRCRGLLH Trigger: GTGCAGAAGACCCCGGCACCTGCCCACAGCACAGCAAACGCTTTTTGAAAGCCTTAACCAAAGAGAAACTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107800.3 |
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| CDS CCA 72 bp | TTTCTCATTCTGGCGCTTGATCATGTATTCCTGGATTaGCAAGCGGGCTGTCTTGACAGAGTATTCTCGGGC | + |
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Preference number: 6 (lower is better) Translates to: FLILALDHVFLD*QAGCLDRVFSG Trigger: GCCCGAGAATACTCTGTCAAGACAGCCCGCTTGCCAATCCAGGAATACATGATCAAGCGCCAGAATGAGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044673.9 ENSMUST00000107800.3 |
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| CDS GCA 72 bp | AAAGTTTCTCTTTGGTTAAGGCTTTCAAAAAGCGTTTaGTGTGCTGTGGGCAGGTGCCGTTACCGGGGTCTT | + |
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Preference number: 6 (lower is better) Translates to: KVSLWLRLSKSV*CAVGRCRYRGL Trigger: AAGACCCCGGTAACGGCACCTGCCCACAGCACAGCAAACGCTTTTTGAAAGCCTTAACCAAAGAGAAACTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000044673.9 ENSMUST00000144781.3 |
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| CDS TCA 72 bp | ATATTTCCGAATGGTAGTTTTTCTCATTCTGGCGCTTaGTCATGTATTCCTGGATTGGCAAGCGGGCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: IFPNGSFSHSGA*SCIPGLASGLS Trigger: AGACAGCCCGCTTGCCAATCCAGGAATACATGATCAAGCGCCAGAATGAGAAAAACTACCATTCGGAAATAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044673.9 ENSMUST00000107800.3 |
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| CDS CAA 90 bp | AGGCCAGTTACGAGTTTCAAAGTAAGTAGACAGGATATCGAACACTaGGTTGATGGCCAATATTTCCGAATGGTAGTTTTTCTCATTCTG | + |
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Preference number: 6 (lower is better) Translates to: RPVTSFKVSRQDIEH*VDGQYFRMVVFLIL Trigger: CAGAATGAGAAAAACTACCATTCGGAAATATTGGCCATCAACCAAGTGTTCGATATCCTGTCTACTTACTTTGAAACTCGTAACTGGCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044673.9 ENSMUST00000107800.3 |
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