Pregenerated sensors for TRMT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001909Ensembl transcript IDs: ENSMUST00000001974.11, ENSMUST00000109767.9, ENSMUST00000109768.9, ENSMUST00000125370.10, ENSMUST00000131700.8, ENSMUST00000136423.3, ENSMUST00000143427.8, ENSMUST00000152301.9, ENSMUST00000175784.2, ENSMUST00000175884.3, ENSMUST00000177084.8, ENSMUST00000177423.8, ENSMUST00000177531.8
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTGCAGCACAATCCGCAGGGCCATTTCATGGCAGGCTCGGCTCTTaGGGGCCATGGCCCCATACTTGCTGTAGCATGTCTCTCCGCTGT | + |
|
Preference number: 1 (lower is better) Translates to: CAAQSAGPFHGRLGS*GPWPHTCCSMSLRC Trigger: ACAGCGGAGAGACATGCTACAGCAAGTATGGGGCCATGGCCCTCAAGAGCCGAGCCTGCCATGAAATGGCCCTGCGGATTGTGCTGCACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131700.8 |
||
| 3UTR TCA 90 bp | AGAGAGAGACTCGGAAACCAGCATGAAGGAGAGCTGACCAGATTCTaGTGGTCCAAACTGCCCCACAAGGGCCCTCACCGAAGCTGCAGA | + |
|
Preference number: 1 (lower is better) Translates to: RERLGNQHEGELTRF*WSKLPHKGPHRSCR Trigger: TCTGCAGCTTCGGTGAGGGCCCTTGTGGGGCAGTTTGGACCATCAGAATCTGGTCAGCTCTCCTTCATGCTGGTTTCCGAGTCTCTCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| 3UTR TCA 90 bp | ACAAGCATGGGAGAGAGAGACTCGGAAACCAGCATGAAGGAGAGCTaGCCAGATTCTGATGGTCCAAACTGCCCCACAAGGGCCCTCACC | + |
|
Preference number: 1 (lower is better) Translates to: TSMGERDSETSMKES*PDSDGPNCPTRALT Trigger: GGTGAGGGCCCTTGTGGGGCAGTTTGGACCATCAGAATCTGGTCAGCTCTCCTTCATGCTGGTTTCCGAGTCTCTCTCTCCCATGCTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| 3UTR GCA 90 bp | TCGCTCAGGTGCCTTTTGGTGTTGGTACATCAGCATCCGGGCATCTaGCTGGTTGGGCTGAACAAGATGTGCCACACCATTGAGCTCCAC | + |
|
Preference number: 1 (lower is better) Translates to: SLRCLLVLVHQHPGI*LVGLNKMCHTIELH Trigger: GTGGAGCTCAATGGTGTGGCACATCTTGTTCAGCCCAACCAGGCAGATGCCCGGATGCTGATGTACCAACACCAAAAGGCACCTGAGCGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| 3UTR-3UTR GCA 90 bp | TGGAGGCCAGGAACCTCCAGGGCAAAACGGATGGAGCGCAGACCGGAAGCTGCCACAGATCTCACCCACTaGAGCAGTCCGTGGCCAGTC | + |
|
Preference number: 2 (lower is better) Translates to: WRPGTSRAKRMERRPEAATDLTH*SSPWPV Trigger: GACTGGCCACGGACTGCTGCAGTGGGTGAGATCTGT...GGCAGCTTCCGGTCTGCGCTCCATCCGTTTTGCCCTGGAGGTTCCTGGCCTCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| 3UTR-3UTR GCA 90 bp | GTAGCATGTCTCTCCGCTGTTCCCCGCCAGGACTGCCATGTCTGTGCAGGTGACACAGATCTCACCCACTaGAGCAGTCCGTGGCCAGTC | + |
|
Preference number: 2 (lower is better) Translates to: VACLSAVPRQDCHVCAGDTDLTH*SSPWPV Trigger: GACTGGCCACGGACTGCTGCAGTGGGTGAGATCTGT...GTCACCTGCACAGACATGGCAGTCCTGGCGGGGAACAGCGGAGAGACATGCTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131700.8 |
||
| 3UTR-3UTR CCA 90 bp | GCATGTCTCTCCGCTGTTCCCCGCCAGGACTGCCATGTCTGTGCAGGTGACACAGGGCATCTGCCTGGTTaGGCTGAACAAGATGTGCCA | + |
|
Preference number: 2 (lower is better) Translates to: ACLSAVPRQDCHVCAGDTGHLPG*AEQDVP Trigger: TGGCACATCTTGTTCAGCCCAACCAGGCAGATGCCC...TGTGTCACCTGCACAGACATGGCAGTCCTGGCGGGGAACAGCGGAGAGACATGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131700.8 |
||
| 3UTR-3UTR TCA 90 bp | GCACTCGTAGACCTTCCTCACAGATCTCACCCACTGCAGCAGTCCGTGGCCAGTCACAGCTATTTTCTCTaGGTCCTTCTCTCCTGGAAC | + |
|
Preference number: 2 (lower is better) Translates to: ALVDLPHRSHPLQQSVASHSYFL*VLLSWN Trigger: GTTCCAGGAGAGAAGGACTCAGAGAAAATAGCTGTG...ACTGGCCACGGACTGCTGCAGTGGGTGAGATCTGTGAGGAAGGTCTACGAGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| 3UTR-3UTR CCA 90 bp | CCTTTTGGTGTTGGTACATCAGCATCCGGGCATCTGCCTGGTTGGGCTGAACAACCGTGGCCAGTCCCCTaGGGCCAGATTTTCATTCTT | + |
|
Preference number: 2 (lower is better) Translates to: PFGVGTSASGHLPGWAEQPWPVP*GQIFIL Trigger: AAGAATGAAAATCTGGCCCCAGGGGACTGGCCACGG...TTGTTCAGCCCAACCAGGCAGATGCCCGGATGCTGATGTACCAACACCAAAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| 3UTR-3UTR CCA 90 bp | GCCATAGGGGTCCAGGTCAATGACATCAAATCGCTCAGGTGCCTTTTGGTGTTGCCGTGGCCAGTCCCCTaGGGCCAGATTTTCATTCTT | + |
|
Preference number: 2 (lower is better) Translates to: AIGVQVNDIKSLRCLLVLPWPVP*GQIFIL Trigger: AAGAATGAAAATCTGGCCCCAGGGGACTGGCCACGG...CAACACCAAAAGGCACCTGAGCGATTTGATGTCATTGACCTGGACCCCTATGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| 3UTR-3UTR TCA 90 bp | GCCATAGGGGTCCAGGTCAATGACATCAAATCGCTCAGGTGCCTTTTGGTGTTGCACAGCTATTTTCTCTaGGTCCTTCTCTCCTGGAAC | + |
|
Preference number: 2 (lower is better) Translates to: AIGVQVNDIKSLRCLLVLHSYFL*VLLSWN Trigger: GTTCCAGGAGAGAAGGACTCAGAGAAAATAGCTGTG...CAACACCAAAAGGCACCTGAGCGATTTGATGTCATTGACCTGGACCCCTATGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| 3UTR-3UTR CAA 90 bp | CCCCATACTTGCTGTAGCATGTCTCTCCGCTGTTCCCCGCCAGGACTGCCATGTCGGGCAGAGGCATCATaGGCAACCACAGACTGGAGG | + |
|
Preference number: 3 (lower is better) Translates to: PHTCCSMSLRCSPPGLPCRAEAS*ATTDWR Trigger: CCTCCAGTCTGTGGTTGCCAATGATGCCTCTGCCCG...ACATGGCAGTCCTGGCGGGGAACAGCGGAGAGACATGCTACAGCAAGTATGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131700.8 |
||
| 3UTR-3UTR CAA 90 bp | CAGGTGCCTTTTGGTGTTGGTACATCAGCATCCGGGCATCTGCCTGGTTGGGCTCGGGCAGAGGCATCATaGGCAACCACAGACTGGAGG | + |
|
Preference number: 3 (lower is better) Translates to: QVPFGVGTSASGHLPGWARAEAS*ATTDWR Trigger: CCTCCAGTCTGTGGTTGCCAATGATGCCTCTGCCCG...AGCCCAACCAGGCAGATGCCCGGATGCTGATGTACCAACACCAAAAGGCACCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| 3UTR TCA 72 bp | CAATCCGCAGGGCCATTTCATGGCAGGCTCGGCTCTTaGGGGCCATGGCCCCATACTTGCTGTAGCATGTCT | + |
|
Preference number: 3 (lower is better) Translates to: QSAGPFHGRLGS*GPWPHTCCSMS Trigger: AGACATGCTACAGCAAGTATGGGGCCATGGCCCTCAAGAGCCGAGCCTGCCATGAAATGGCCCTGCGGATTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131700.8 |
||
| 3UTR CCA 72 bp | ACAACACTGAGGACGCCTTGGATCCTCATGGAAGTGTaGAAGCGGCCAGGATTCGTGGTCACTGCGTCAAGA | + |
|
Preference number: 3 (lower is better) Translates to: TTLRTPWILMEV*KRPGFVVTASR Trigger: TCTTGACGCAGTGACCACGAATCCTGGCCGCTTCCACACTTCCATGAGGATCCAAGGCGTCCTCAGTGTTGT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| 3UTR TCA 72 bp | GGAGAGAGAGACTCGGAAACCAGCATGAAGGAGAGCTaGCCAGATTCTGATGGTCCAAACTGCCCCACAAGG | + |
|
Preference number: 3 (lower is better) Translates to: GERDSETSMKES*PDSDGPNCPTR Trigger: CCTTGTGGGGCAGTTTGGACCATCAGAATCTGGTCAGCTCTCCTTCATGCTGGTTTCCGAGTCTCTCTCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| 3UTR GCA 72 bp | CATCCGGGCATCTGCCTGGTTGGGCTGAACAAGATGTaGCACACCATTGAGCTCCACATTTCTGTGCATAAG | + |
|
Preference number: 3 (lower is better) Translates to: HPGICLVGLNKM*HTIELHISVHK Trigger: CTTATGCACAGAAATGTGGAGCTCAATGGTGTGGCACATCTTGTTCAGCCCAACCAGGCAGATGCCCGGATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| 3UTR GCA 72 bp | TGCCTTTTGGTGTTGGTACATCAGCATCCGGGCATCTaGCTGGTTGGGCTGAACAAGATGTGCCACACCATT | + |
|
Preference number: 3 (lower is better) Translates to: CLLVLVHQHPGI*LVGLNKMCHTI Trigger: AATGGTGTGGCACATCTTGTTCAGCCCAACCAGGCAGATGCCCGGATGCTGATGTACCAACACCAAAAGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| 3UTR CCA 72 bp | TCAGGAAGTTCCTCAGTAACAACACTGAGGACGCCTTaGATCCTCATGGAAGTGTGGAAGCGGCCAGGATTC | + |
|
Preference number: 3 (lower is better) Translates to: SGSSSVTTLRTP*ILMEVWKRPGF Trigger: GAATCCTGGCCGCTTCCACACTTCCATGAGGATCCAAGGCGTCCTCAGTGTTGTTACTGAGGAACTTCCTGA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| 3UTR-3UTR CAA 90 bp | TCTGTCTTCACTGCATTCTTACAAGCATGGGAGAGAGAGACTCGGAAACCAGCAAGAAGGCGGGGTGTGTaGCAGTGGATAGTGCTGCTC | + |
|
Preference number: 3 (lower is better) Translates to: SVFTAFLQAWERETRKPARRRGV*QWIVLL Trigger: GAGCAGCACTATCCACTGCAACACACCCCGCCTTCT...TGCTGGTTTCCGAGTCTCTCTCTCCCATGCTTGTAAGAATGCAGTGAAGACAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| 3UTR-3UTR CAA 90 bp | GCCATAGGGGTCCAGGTCAATGACATCAAATCGCTCAGGTGCCTTTTGGTGTTGAGCTGTTTCCTCTTCTaGATCAGACAAGTCCACAGC | + |
|
Preference number: 3 (lower is better) Translates to: AIGVQVNDIKSLRCLLVLSCFLF*IRQVHS Trigger: GCTGTGGACTTGTCTGATCAAGAAGAGGAAACAGCT...CAACACCAAAAGGCACCTGAGCGATTTGATGTCATTGACCTGGACCCCTATGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| CDS-3UTR CCA 90 bp | AAACTGCCCCACAAGGGCCCTCACCGAAGCTGCAGAAGGCGGGGTGTGTTGCAGATGGGGCCCCCAAGCTaGGCCCACCTGGTGTCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: KLPHKGPHRSCRRRGVLQMGPPS*AHLVSL Trigger: CAGAGACACCAGGTGGGCCCAGCTTGGGGGCCCCAT...CTGCAACACACCCCGCCTTCTGCAGCTTCGGTGAGGGCCCTTGTGGGGCAGTTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| CDS-3UTR CCA 90 bp | TGGAGGCCAGGAACCTCCAGGGCAAAACGGATGGAGCGCAGACCGGAAGCTGCCGTTCTCCATCGCTGGTaGAGAGGGAGGCTTCTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: WRPGTSRAKRMERRPEAAVLHRW*RGRLLG Trigger: GCCCAGAAGCCTCCCTCTCCACCAGCGATGGAGAAC...GGCAGCTTCCGGTCTGCGCTCCATCCGTTTTGCCCTGGAGGTTCCTGGCCTCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| CDS-3UTR TCA 90 bp | TGGTCCAAACTGCCCCACAAGGGCCCTCACCGAAGCTGCAGAAGGCGGGGTGTGAGGCTGCAGAGAACTTaGTCCTGCCACCAGGGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: WSKLPHKGPHRSCRRRGVRLQRT*SCHQGL Trigger: GAGACCCTGGTGGCAGGATCAAGTTCTCTGCAGCCT...CACACCCCGCCTTCTGCAGCTTCGGTGAGGGCCCTTGTGGGGCAGTTTGGACCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| CDS-3UTR TCA 90 bp | TGGAGGCCAGGAACCTCCAGGGCAAAACGGATGGAGCGCAGACCGGAAGCTGCCACGTCAGGTCCCGGTTaGATTCCTGCACCGGGTTAT | + |
|
Preference number: 4 (lower is better) Translates to: WRPGTSRAKRMERRPEAATSGPG*IPAPGY Trigger: ATAACCCGGTGCAGGAATTCAACCGGGACCTGACGT...GGCAGCTTCCGGTCTGCGCTCCATCCGTTTTGCCCTGGAGGTTCCTGGCCTCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| CDS-3UTR CCA 90 bp | TGGAGGCCAGGAACCTCCAGGGCAAAACGGATGGAGCGCAGACCGGAAGCTGCCGGCAAAAACCAGATCTaGATTCCCTTGGCCCCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: WRPGTSRAKRMERRPEAAGKNQI*IPLAPR Trigger: TCTTGGGGCCAAGGGAATCCAGATCTGGTTTTTGCC...GGCAGCTTCCGGTCTGCGCTCCATCCGTTTTGCCCTGGAGGTTCCTGGCCTCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000143427.8 |
||
| CDS-3UTR CCA 90 bp | TCATGGAAGTGTGGAAGCGGCCAGGATTCGTGGTCACTGCGTCAAGAACTCGGCCAAGCTGGGCCCACCTaGTGTCTCTGTCCACAGTGC | + |
|
Preference number: 4 (lower is better) Translates to: SWKCGSGQDSWSLRQELGQAGPT*CLCPQC Trigger: GCACTGTGGACAGAGACACCAGGTGGGCCCAGCTTG...GCCGAGTTCTTGACGCAGTGACCACGAATCCTGGCCGCTTCCACACTTCCATGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| CDS-3UTR TCA 90 bp | CATGGCCCCATACTTGCTGTAGCATGTCTCTCCGCTGTTCCCCGCCAGGACTGCTTCCGTTCCATGAACTaGGCTCTACAGAGGCTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: HGPILAVACLSAVPRQDCFRSMN*ALQRLW Trigger: CCACAGCCTCTGTAGAGCTCAGTTCATGGAACGGAA...GCAGTCCTGGCGGGGAACAGCGGAGAGACATGCTACAGCAAGTATGGGGCCATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131700.8 |
||
| CDS-3UTR TCA 90 bp | TCATTGGCAACCACAGACTGGAGGCCAGGAACCTCCAGGGCAAAACGGATGGAGGGGCCTTCCGTTCCATaGACTGAGCTCTACAGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: SLATTDWRPGTSRAKRMEGPSVP*TELYRG Trigger: GCCTCTGTAGAGCTCAGTTCATGGAACGGAAGGCCC...CTCCATCCGTTTTGCCCTGGAGGTTCCTGGCCTCCAGTCTGTGGTTGCCAATGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131700.8 |
||
| CDS-3UTR CCA 90 bp | GTGCCTTTTGGTGTTGGTACATCAGCATCCGGGCATCTGCCTGGTTGGGCTGAAGTTCTCCATCGCTGGTaGAGAGGGAGGCTTCTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: VPFGVGTSASGHLPGWAEVLHRW*RGRLLG Trigger: GCCCAGAAGCCTCCCTCTCCACCAGCGATGGAGAAC...TTCAGCCCAACCAGGCAGATGCCCGGATGCTGATGTACCAACACCAAAAGGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| CDS-3UTR CCA 90 bp | ATTCTGATGGTCCAAACTGCCCCACAAGGGCCCTCACCGAAGCTGCAGAAGGCGACACTCGGGAGTTACTaGAGGACCACAGGCTGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: ILMVQTAPQGPSPKLQKATLGSY*RTTGCR Trigger: TCTGCAGCCTGTGGTCCTCCAGTAACTCCCGAGTGT...CGCCTTCTGCAGCTTCGGTGAGGGCCCTTGTGGGGCAGTTTGGACCATCAGAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| CDS-3UTR TCA 90 bp | CATGTCTCTCCGCTGTTCCCCGCCAGGACTGCCATGTCTGTGCAGGTGACACACTTCGAGCAAACTCTGTaGTCACAGCACACGTCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: HVSPLFPARTAMSVQVTHFEQTL*SQHTSG Trigger: ACCTGACGTGTGCTGTGATCACAGAGTTTGCTCGAA...GTGTGTCACCTGCACAGACATGGCAGTCCTGGCGGGGAACAGCGGAGAGACATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131700.8 |
||
| CDS-3UTR TCA 90 bp | GCACTCGTAGACCTTCCTCACAGATCTCACCCACTGCAGCAGTCCGTGGCCAGTCCCTTGGCCCCAAGATaGATTCGAGCAAACTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: ALVDLPHRSHPLQQSVASPLAPR*IRANSV Trigger: CACAGAGTTTGCTCGAATTCATCTTGGGGCCAAGGG...ACTGGCCACGGACTGCTGCAGTGGGTGAGATCTGTGAGGAAGGTCTACGAGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| CDS-3UTR TCA 90 bp | AACAACACTGAGGACGCCTTGGATCCTCATGGAAGTGTGGAAGCGGCCAGGATTGCCACCAGGGTCTCCTaGTGCTTTGCCAAGGCGTTG | + |
|
Preference number: 4 (lower is better) Translates to: NNTEDALDPHGSVEAARIATRVS*CFAKAL Trigger: CAACGCCTTGGCAAAGCATCAGGAGACCCTGGTGGC...AATCCTGGCCGCTTCCACACTTCCATGAGGATCCAAGGCGTCCTCAGTGTTGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| CDS-3UTR TCA 90 bp | TCATTGGCAACCACAGACTGGAGGCCAGGAACCTCCAGGGCAAAACGGATGGAGGGGCCTTCCGTTCCATaGACTGAGCTCTACAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: SLATTDWRPGTSRAKRMEGPSVP*TELYRG Trigger: TCCTCTGTAGAGCTCAGTTCATGGAACGGAAGGCCC...CTCCATCCGTTTTGCCCTGGAGGTTCCTGGCCTCCAGTCTGTGGTTGCCAATGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143427.8 |
||
| CDS-3UTR GCA 90 bp | TGGATCCTCATGGAAGTGTGGAAGCGGCCAGGATTCGTGGTCACTGCGTCAAGATGGAGGACCACAGGCTaGAGAGAACTTGATCCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: WILMEVWKRPGFVVTASRWRTTG*RELDPA Trigger: GGCAGGATCAAGTTCTCTGCAGCCTGTGGTCCTCCA...TCTTGACGCAGTGACCACGAATCCTGGCCGCTTCCACACTTCCATGAGGATCCA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| CDS-3UTR TCA 90 bp | CCTTTTGGTGTTGGTACATCAGCATCCGGGCATCTGCCTGGTTGGGCTGAACAAACGTCAGGTCCCGGTTaGATTCCTGCACCGGGTTAT | + |
|
Preference number: 4 (lower is better) Translates to: PFGVGTSASGHLPGWAEQTSGPG*IPAPGY Trigger: ATAACCCGGTGCAGGAATTCAACCGGGACCTGACGT...TTGTTCAGCCCAACCAGGCAGATGCCCGGATGCTGATGTACCAACACCAAAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| CDS-3UTR TCA 90 bp | GCTGTAGCATGTCTCTCCGCTGTTCCCCGCCAGGACTGCCATGTCTGTGCAGGTAAACCAGACTATCAATaGTCTCTGGATTCCCTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: AVACLSAVPRQDCHVCAGKPDYQ*SLDSLG Trigger: GCCAAGGGAATCCAGAGATCATTGATAGTCTGGTTT...ACCTGCACAGACATGGCAGTCCTGGCGGGGAACAGCGGAGAGACATGCTACAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131700.8 |
||
| CDS-3UTR GCA 90 bp | TCATGGAAGTGTGGAAGCGGCCAGGATTCGTGGTCACTGCGTCAAGAACTCGGCTGTCTCTGTCCACAGTaGTCACACTCGGGAGTTACT | + |
|
Preference number: 4 (lower is better) Translates to: SWKCGSGQDSWSLRQELGCLCPQ*SHSGVT Trigger: AGTAACTCCCGAGTGTGAGCACTGTGGACAGAGACA...GCCGAGTTCTTGACGCAGTGACCACGAATCCTGGCCGCTTCCACACTTCCATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| CDS-3UTR CCA 90 bp | GCCATAGGGGTCCAGGTCAATGACATCAAATCGCTCAGGTGCCTTTTGGTGTTGGGAGAGGGAGGCTTCTaGGCCTTCCGTTCCATGAAC | + |
|
Preference number: 4 (lower is better) Translates to: AIGVQVNDIKSLRCLLVLGEGGF*AFRSMN Trigger: GTTCATGGAACGGAAGGCCCAGAAGCCTCCCTCTCC...CAACACCAAAAGGCACCTGAGCGATTTGATGTCATTGACCTGGACCCCTATGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| CDS-3UTR CCA 90 bp | TCCTCAGTAACAACACTGAGGACGCCTTGGATCCTCATGGAAGTGTGGAAGCGGCCACAACCCACACACTaGAACACCAGGGCCTGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: SSVTTLRTPWILMEVWKRPQPTH*NTRACL Trigger: CAAACAGGCCCTGGTGTTCCAGTGTGTGGGTTGTGG...CCGCTTCCACACTTCCATGAGGATCCAAGGCGTCCTCAGTGTTGTTACTGAGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| CDS-3UTR CCA 90 bp | AGCACTCGTAGACCTTCCTCACAGATCTCACCCACTGCAGCAGTCCGTGGCCAGACTATCAATGATCTCTaGATTCCCTTGGCCCCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: STRRPSSQISPTAAVRGQTINDL*IPLAPR Trigger: TCTTGGGGCCAAGGGAATCCAGAGATCATTGATAGT...CTGGCCACGGACTGCTGCAGTGGGTGAGATCTGTGAGGAAGGTCTACGAGTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131700.8 |
||
| CDS-3UTR CCA 90 bp | TCATTGGCAACCACAGACTGGAGGCCAGGAACCTCCAGGGCAAAACGGATGGAGAGATCTGGATTCCCTTaGCCCCAAGATGAATTCGAG | + |
|
Preference number: 4 (lower is better) Translates to: SLATTDWRPGTSRAKRMERSGFP*PQDEFE Trigger: CTCGAATTCATCTTGGGGCCAAGGGAATCCAGATCT...CTCCATCCGTTTTGCCCTGGAGGTTCCTGGCCTCCAGTCTGTGGTTGCCAATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143427.8 |
||
| CDS-3UTR TCA 90 bp | GCCATAGGGGTCCAGGTCAATGACATCAAATCGCTCAGGTGCCTTTTGGTGTTGCCCTTGGCCCCAAGATaGATTCGAGCAAACTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: AIGVQVNDIKSLRCLLVLPLAPR*IRANSV Trigger: CACAGAGTTTGCTCGAATTCATCTTGGGGCCAAGGG...CAACACCAAAAGGCACCTGAGCGATTTGATGTCATTGACCTGGACCCCTATGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000131700.8 ENSMUST00000143427.8 |
||
| CDS GCA 90 bp | CAGTCGCAACCGGGTCCGCGGGTGGGCGCTCTTCCCAGGACCGGGTaGCGTTCTCCATCGCTGGTGGAGAGGGAGGCTTCTGGGCCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: QSQPGPRVGALPRTG*RSPSLVEREASGPS Trigger: GGAAGGCCCAGAAGCCTCCCTCTCCACCAGCGATGGAGAACGGCACCCGGTCCTGGGAAGAGCGCCCACCCGCGGACCCGGTTGCGACTG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENSMUST00000001974.11 ENSMUST00000109767.9 ENSMUST00000109768.9 ENSMUST00000125370.10 ENSMUST00000131700.8 ENSMUST00000143427.8 ENSMUST00000152301.9 ENSMUST00000175784.2 ENSMUST00000177084.8 ENSMUST00000177423.8 ENSMUST00000177531.8 |
||
| CDS GCA 90 bp | ACATGGGGCCCCCAAGCTGGGCCCACCTGGTGTCTCTGTCCACAGTaGTCACACTCGGGAGTTACTGGAGGACCACAGGCTGCAGAGAAC | + |
|
Preference number: 5 (lower is better) Translates to: TWGPQAGPTWCLCPQ*SHSGVTGGPQAAEN Trigger: GTTCTCTGCAGCCTGTGGTCCTCCAGTAACTCCCGAGTGTGAGCACTGTGGACAGAGACACCAGGTGGGCCCAGCTTGGGGGCCCCATGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| CDS CCA 90 bp | GCCCACCTGGTGTCTCTGTCCACAGTGCTCACACTCGGGAGTTACTaGAGGACCACAGGCTGCAGAGAACTTGATCCTGCCACCAGGGTC | + |
|
Preference number: 5 (lower is better) Translates to: AHLVSLSTVLTLGSY*RTTGCRELDPATRV Trigger: GACCCTGGTGGCAGGATCAAGTTCTCTGCAGCCTGTGGTCCTCCAGTAACTCCCGAGTGTGAGCACTGTGGACAGAGACACCAGGTGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| CDS TCA 90 bp | AGGACCACAGGCTGCAGAGAACTTGATCCTGCCACCAGGGTCTCCTaGTGCTTTGCCAAGGCGTTGCAGGTAGAAGGCTCCACAACCCAC | + |
|
Preference number: 5 (lower is better) Translates to: RTTGCRELDPATRVS*CFAKALQVEGSTTH Trigger: GTGGGTTGTGGAGCCTTCTACCTGCAACGCCTTGGCAAAGCATCAGGAGACCCTGGTGGCAGGATCAAGTTCTCTGCAGCCTGTGGTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000001974.11 ENSMUST00000109767.9 ENSMUST00000109768.9 ENSMUST00000175884.3 |
||
| CDS TCA 90 bp | GCTCACACTCGGGAGTTACTGGAGGACCACAGGCTGCAGAGAACTTaGTCCTGCCACCAGGGTCTCCTGATGCTTTGCCAAGGCGTTGCA | + |
|
Preference number: 5 (lower is better) Translates to: AHTRELLEDHRLQRT*SCHQGLLMLCQGVA Trigger: TGCAACGCCTTGGCAAAGCATCAGGAGACCCTGGTGGCAGGATCAAGTTCTCTGCAGCCTGTGGTCCTCCAGTAACTCCCGAGTGTGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000001974.11 ENSMUST00000109767.9 ENSMUST00000109768.9 ENSMUST00000175884.3 |
||
| CDS TCA 90 bp | ACAAGCATGGGAGAGAGAGACTCGGAAACCAGCATGAAGGAGAGCTaGCCGAAGCTGCAGAAGGCGGGGTGTGTTGCAGTGGATAGTGCT | + |
|
Preference number: 5 (lower is better) Translates to: TSMGERDSETSMKES*PKLQKAGCVAVDSA Trigger: AGCACTATCCACTGCAACACACCCCGCCTTCTGCAGCTTCGGTCAGCTCTCCTTCATGCTGGTTTCCGAGTCTCTCTCTCCCATGCTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000001974.11 ENSMUST00000109767.9 ENSMUST00000109768.9 ENSMUST00000125370.10 |
||
| CDS GCA 90 bp | ACGCATGATGTCCCAGAGGGCCTCAGGGGGAGCATCTGTCTTCACTaGATTCTTACAAGCATGGGAGAGAGAGACTCGGAAACCAGCATG | + |
|
Preference number: 5 (lower is better) Translates to: THDVPEGLRGSICLH*ILTSMGERDSETSM Trigger: CATGCTGGTTTCCGAGTCTCTCTCTCCCATGCTTGTAAGAATGCAGTGAAGACAGATGCTCCCCCTGAGGCCCTCTGGGACATCATGCGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000001974.11 ENSMUST00000109767.9 ENSMUST00000109768.9 ENSMUST00000125370.10 |
||
| CDS-3UTR CAA 90 bp | ATCAGGAAGTTCCTCAGTAACAACACTGAGGACGCCTTGGATCCTCATGGAAGTCAGGCTGCAGAGAACTaGATCCTGCCACCAGGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: IRKFLSNNTEDALDPHGSQAAEN*ILPPGS Trigger: AGACCCTGGTGGCAGGATCAAGTTCTCTGCAGCCTG...ACTTCCATGAGGATCCAAGGCGTCCTCAGTGTTGTTACTGAGGAACTTCCTGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| CDS GCA 72 bp | CCGGGTCCGCGGGTGGGCGCTCTTCCCAGGACCGGGTaGCGTTCTCCATCGCTGGTGGAGAGGGAGGCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: PGPRVGALPRTG*RSPSLVEREAS Trigger: AGAAGCCTCCCTCTCCACCAGCGATGGAGAACGGCACCCGGTCCTGGGAAGAGCGCCCACCCGCGGACCCGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENSMUST00000001974.11 ENSMUST00000109767.9 ENSMUST00000109768.9 ENSMUST00000125370.10 ENSMUST00000131700.8 ENSMUST00000143427.8 ENSMUST00000152301.9 ENSMUST00000175784.2 ENSMUST00000177084.8 ENSMUST00000177423.8 ENSMUST00000177531.8 |
||
| CDS CAA 72 bp | TCTGTAGCAGCCTCCGCCTCCCTGCTAGATCTTCACTaGCTGCCTTGCCCCCTGGCCGGGCACGGGGCCGGG | + |
|
Preference number: 6 (lower is better) Translates to: SVAASASLLDLH*LPCPLAGHGAG Trigger: CCCGGCCCCGTGCCCGGCCAGGGGGCAAGGCAGCAAGTGAAGATCTAGCAGGGAGGCGGAGGCTGCTACAGA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000001974.11 ENSMUST00000109767.9 ENSMUST00000109768.9 ENSMUST00000125370.10 ENSMUST00000136423.3 |
||
| CDS CCA 72 bp | GCGCTCTTCCCAGGACCGGGTGCCGTTCTCCATCGCTaGTGGAGAGGGAGGCTTCTGGGCCTTCCGTTCCAT | + |
|
Preference number: 6 (lower is better) Translates to: ALFPGPGAVLHR*WRGRLLGLPFH Trigger: ATGGAACGGAAGGCCCAGAAGCCTCCCTCTCCACCAGCGATGGAGAACGGCACCCGGTCCTGGGAAGAGCGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENSMUST00000001974.11 ENSMUST00000109767.9 ENSMUST00000109768.9 ENSMUST00000125370.10 ENSMUST00000131700.8 ENSMUST00000143427.8 ENSMUST00000152301.9 ENSMUST00000175784.2 ENSMUST00000177084.8 ENSMUST00000177423.8 ENSMUST00000177531.8 |
||
| CDS TCA 72 bp | GGAGAGGGAGGCTTCTGGGCCTTCCGTTCCATGAACTaGGCTCTACAGAGGCTGTGGGCCGGACGGAGAGGA | + |
|
Preference number: 6 (lower is better) Translates to: GEGGFWAFRSMN*ALQRLWAGRRG Trigger: TCCTCTCCGTCCGGCCCACAGCCTCTGTAGAGCTCAGTTCATGGAACGGAAGGCCCAGAAGCCTCCCTCTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000001974.11 ENSMUST00000109767.9 ENSMUST00000125370.10 ENSMUST00000131700.8 ENSMUST00000152301.9 ENSMUST00000175784.2 ENSMUST00000177531.8 |
||
| CDS TCA 72 bp | CTGGTGGAGAGGGAGGCTTCTGGGCCTTCCGTTCCATaGACTGAGCTCTACAGAGGCTGTGGGCCGGACGGA | + |
|
Preference number: 6 (lower is better) Translates to: LVEREASGPSVP*TELYRGCGPDG Trigger: TCCGTCCGGCCCACAGCCTCTGTAGAGCTCAGTTCATGGAACGGAAGGCCCAGAAGCCTCCCTCTCCACCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000001974.11 ENSMUST00000109767.9 ENSMUST00000125370.10 ENSMUST00000131700.8 ENSMUST00000152301.9 ENSMUST00000175784.2 ENSMUST00000177531.8 |
||
| CDS GCA 72 bp | CCCCAAGCTGGGCCCACCTGGTGTCTCTGTCCACAGTaGTCACACTCGGGAGTTACTGGAGGACCACAGGCT | + |
|
Preference number: 6 (lower is better) Translates to: PQAGPTWCLCPQ*SHSGVTGGPQA Trigger: AGCCTGTGGTCCTCCAGTAACTCCCGAGTGTGAGCACTGTGGACAGAGACACCAGGTGGGCCCAGCTTGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175884.3 |
||
| CDS CAA 90 bp | TGCTCACACTCGGGAGTTACTGGAGGACCACAGGCTGCAGAGAACTaGATCCTGCCACCAGGGTCTCCTGATGCTTTGCCAAGGCGTTGC | + |
|
Preference number: 6 (lower is better) Translates to: CSHSGVTGGPQAAEN*ILPPGSPDALPRRC Trigger: GCAACGCCTTGGCAAAGCATCAGGAGACCCTGGTGGCAGGATCAAGTTCTCTGCAGCCTGTGGTCCTCCAGTAACTCCCGAGTGTGAGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000001974.11 ENSMUST00000109767.9 ENSMUST00000109768.9 ENSMUST00000175884.3 |
||
| CDS TCA 72 bp | GGCTGCAGAGAACTTGATCCTGCCACCAGGGTCTCCTaGTGCTTTGCCAAGGCGTTGCAGGTAGAAGGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: GCRELDPATRVS*CFAKALQVEGS Trigger: GGAGCCTTCTACCTGCAACGCCTTGGCAAAGCATCAGGAGACCCTGGTGGCAGGATCAAGTTCTCTGCAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000001974.11 ENSMUST00000109767.9 ENSMUST00000109768.9 ENSMUST00000175884.3 |
||
| CDS TCA 72 bp | GGAGAGAGAGACTCGGAAACCAGCATGAAGGAGAGCTaGCCGAAGCTGCAGAAGGCGGGGTGTGTTGCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: GERDSETSMKES*PKLQKAGCVAV Trigger: CACTGCAACACACCCCGCCTTCTGCAGCTTCGGTCAGCTCTCCTTCATGCTGGTTTCCGAGTCTCTCTCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000001974.11 ENSMUST00000109767.9 ENSMUST00000109768.9 ENSMUST00000125370.10 |
||
| CDS TCA 72 bp | GGAGAGGGAGGCTTCTGGGCCTTCCGTTCCATGAACTaGGCTCTACAGAGGAGGATCCAACGAGTCACGGTG | + |
|
Preference number: 6 (lower is better) Translates to: GEGGFWAFRSMN*ALQRRIQRVTV Trigger: CACCGTGACTCGTTGGATCCTCCTCTGTAGAGCTCAGTTCATGGAACGGAAGGCCCAGAAGCCTCCCTCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109768.9 ENSMUST00000143427.8 ENSMUST00000177423.8 |
||
| CDS GCA 72 bp | AGCTGGGTTTCTTTCCTCAGTCTCTGGCCCCAGCTGTaGCAGAGGCCCAACCTTGGTCCAGTTGCATGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: SWVSFLSLWPQL*QRPNLGPVAWK Trigger: CTTCCATGCAACTGGACCAAGGTTGGGCCTCTGGCACAGCTGGGGCCAGAGACTGAGGAAAGAAACCCAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136423.3 |
||
| CDS CAA 72 bp | TCAGTCTCTGGCCCCAGCTGTGCCAGAGGCCCAACCTaGGTCCAGTTGCATGGAAGGTGGAAGGAGAGATCA | + |
|
Preference number: 6 (lower is better) Translates to: SVSGPSCARGPT*VQLHGRWKERS Trigger: TGATCTCTCCTTCCACCTTCCATGCAACTGGACCAAGGTTGGGCCTCTGGCACAGCTGGGGCCAGAGACTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136423.3 |
||
| CDS TCA 72 bp | CTGGTGGAGAGGGAGGCTTCTGGGCCTTCCGTTCCATaGACTGAGCTCTACAGAGGAGGATCCAACGAGTCA | + |
|
Preference number: 6 (lower is better) Translates to: LVEREASGPSVP*TELYRGGSNES Trigger: TGACTCGTTGGATCCTCCTCTGTAGAGCTCAGTTCATGGAACGGAAGGCCCAGAAGCCTCCCTCTCCACCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109768.9 ENSMUST00000143427.8 ENSMUST00000177423.8 |
||
| CDS GCA 72 bp | GCCCCAGCTGTGCCAGAGGCCCAACCTTGGTCCAGTTaGATGGAAGGTGGAAGGAGAGATCACCTCTTTGAA | + |
|
Preference number: 6 (lower is better) Translates to: APAVPEAQPWSS*MEGGRRDHLFE Trigger: TTCAAAGAGGTGATCTCTCCTTCCACCTTCCATGCAACTGGACCAAGGTTGGGCCTCTGGCACAGCTGGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136423.3 |
||
| CDS CCA 72 bp | GTGTCTCTGTCCACAGTGCTCACACTCGGGAGTTACTaGAGGACCACAGGCTGCAGAGAACTTGATCCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: VSLSTVLTLGSY*RTTGCRELDPA Trigger: GGCAGGATCAAGTTCTCTGCAGCCTGTGGTCCTCCAGTAACTCCCGAGTGTGAGCACTGTGGACAGAGACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000001974.11 ENSMUST00000109767.9 ENSMUST00000109768.9 ENSMUST00000175884.3 |
||
| CDS CCA 72 bp | GTGTCTCTGTCCACAGTGCTCACACTCGGGAGTTACTaGAGGACCACAGGCTGCAGAGAACTTGATCCTGGC | + |
|
Preference number: 6 (lower is better) Translates to: VSLSTVLTLGSY*RTTGCRELDPG Trigger: GCCAGGATCAAGTTCTCTGCAGCCTGTGGTCCTCCAGTAACTCCCGAGTGTGAGCACTGTGGACAGAGACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125370.10 |
||
| CDS CCA 72 bp | TGCTGGACTGCTTTCAGACAGCCGCTCCCGTTTCACTaGACATTCCTTTTCCCAGCAACGCATGATGTCCCA | + |
|
Preference number: 6 (lower is better) Translates to: CWTAFRQPLPFH*TFLFPATHDVP Trigger: TGGGACATCATGCGTTGCTGGGAAAAGGAATGTCCAGTGAAACGGGAGCGGCTGTCTGAAAGCAGTCCAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000001974.11 ENSMUST00000109767.9 ENSMUST00000109768.9 ENSMUST00000125370.10 |
||
| CDS CCA 72 bp | CAGCTGTGCCAGAGGCCCAACCTTGGTCCAGTTGCATaGAAGGTGGAAGGAGAGATCACCTCTTTGAATCGT | + |
|
Preference number: 6 (lower is better) Translates to: QLCQRPNLGPVA*KVEGEITSLNR Trigger: ACGATTCAAAGAGGTGATCTCTCCTTCCACCTTCCATGCAACTGGACCAAGGTTGGGCCTCTGGCACAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136423.3 |
||
| CDS CAA 72 bp | CCAGTTGCATGGAAGGTGGAAGGAGAGATCACCTCTTaGAATCGTTTGCAAGGAAATGTCTTAAGGCGAGCT | + |
|
Preference number: 6 (lower is better) Translates to: PVAWKVEGEITS*NRLQGNVLRRA Trigger: AGCTCGCCTTAAGACATTTCCTTGCAAACGATTCAAAGAGGTGATCTCTCCTTCCACCTTCCATGCAACTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136423.3 |
||