Pregenerated sensors for TRIT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028653Ensembl transcript IDs: ENSMUST00000102649.4
Found 91 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACTGCAGACCACAGCACAGAATGAAAGAAGATGGTGGGGCCTTCTaGCCAGCATTCCTCAGTCCAGGCGTGGGAGAGCGACACTCCCCT | + |
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Preference number: 1 (lower is better) Translates to: HCRPQHRMKEDGGAF*PAFLSPGVGERHSP Trigger: AGGGGAGTGTCGCTCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCACCATCTTCTTTCATTCTGTGCTGTGGTCTGCAGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| 3UTR TCA 90 bp | GGAGCTGAAAGGCCTGCTGTTTCCACTGCAGACCACAGCACAGAATaGAAGAAGATGGTGGGGCCTTCTGCCCAGCATTCCTCAGTCCAG | + |
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Preference number: 1 (lower is better) Translates to: GAERPAVSTADHSTE*KKMVGPSAQHSSVQ Trigger: CTGGACTGAGGAATGCTGGGCAGAAGGCCCCACCATCTTCTTTCATTCTGTGCTGTGGTCTGCAGTGGAAACAGCAGGCCTTTCAGCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| 3UTR TCA 90 bp | TCTCTCTGCACTACTCCTTTCTGCCGTTCTCGAGTCCAGAGCTCCTaGCTGCGCCTTACAATACTTCAGTCATCTACAAAAGCATCTGGA | + |
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Preference number: 1 (lower is better) Translates to: SLCTTPFCRSRVQSS*LRLTILQSSTKASG Trigger: TCCAGATGCTTTTGTAGATGACTGAAGTATTGTAAGGCGCAGTCAGGAGCTCTGGACTCGAGAACGGCAGAAAGGAGTAGTGCAGAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| 3UTR GCA 90 bp | TCTGCACTACTCCTTTCTGCCGTTCTCGAGTCCAGAGCTCCTGACTaGGCCTTACAATACTTCAGTCATCTACAAAAGCATCTGGAAACG | + |
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Preference number: 1 (lower is better) Translates to: SALLLSAVLESRAPD*ALQYFSHLQKHLET Trigger: CGTTTCCAGATGCTTTTGTAGATGACTGAAGTATTGTAAGGCGCAGTCAGGAGCTCTGGACTCGAGAACGGCAGAAAGGAGTAGTGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| 3UTR CCA 90 bp | CTCCTGACTGCGCCTTACAATACTTCAGTCATCTACAAAAGCATCTaGAAACGAGCTATTTTTAGCCAGCGCCAGGGACAAGAACGCTCT | + |
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Preference number: 1 (lower is better) Translates to: LLTAPYNTSVIYKSI*KRAIFSQRQGQERS Trigger: AGAGCGTTCTTGTCCCTGGCGCTGGCTAAAAATAGCTCGTTTCCAGATGCTTTTGTAGATGACTGAAGTATTGTAAGGCGCAGTCAGGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| 3UTR-3UTR GCA 90 bp | AGGTCACAACCACCTCAGCCTGACCCCCTCTTCTGTAGATTCACAGAGCTGGGACGCTCTTTTAAAGGATaGACTGAATCTTGGTATTCA | + |
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Preference number: 2 (lower is better) Translates to: RSQPPQPDPLFCRFTELGRSFKG*TESWYS Trigger: TGAATACCAAGATTCAGTGCATCCTTTAAAAGAGCG...TCCCAGCTCTGTGAATCTACAGAAGAGGGGGTCAGGCTGAGGTGGTTGTGACCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| 3UTR-3UTR CCA 90 bp | GATCCAGGTCACAACCACCTCAGCCTGACCCCCTCTTCTGTAGATTCACAGAGCATCTACAAAAGCATCTaGAAACGAGCTATTTTTAGC | + |
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Preference number: 2 (lower is better) Translates to: DPGHNHLSLTPSSVDSQSIYKSI*KRAIFS Trigger: GCTAAAAATAGCTCGTTTCCAGATGCTTTTGTAGAT...GCTCTGTGAATCTACAGAAGAGGGGGTCAGGCTGAGGTGGTTGTGACCTGGATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| 3UTR CCA 72 bp | GTGGGGCCTTCTGCCCAGCATTCCTCAGTCCAGGCGTaGGAGAGCGACACTCCCCTCCCTCCTGGGCTTGAT | + |
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Preference number: 3 (lower is better) Translates to: VGPSAQHSSVQA*ESDTPLPPGLD Trigger: ATCAAGCCCAGGAGGGAGGGGAGTGTCGCTCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| 3UTR GCA 72 bp | CCACAGCACAGAATGAAAGAAGATGGTGGGGCCTTCTaGCCAGCATTCCTCAGTCCAGGCGTGGGAGAGCGA | + |
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Preference number: 3 (lower is better) Translates to: PQHRMKEDGGAF*PAFLSPGVGER Trigger: TCGCTCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCACCATCTTCTTTCATTCTGTGCTGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| 3UTR-3UTR CAA 90 bp | GTTCTCGAGTCCAGAGCTCCTGACTGCGCCTTACAATACTTCAGTCATCTACAACCCTCCCTCCTGGGCTaGATCCCCACGTCTCTGCAA | + |
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Preference number: 3 (lower is better) Translates to: VLESRAPDCALQYFSHLQPSLLG*IPTSLQ Trigger: TTGCAGAGACGTGGGGATCAAGCCCAGGAGGGAGGG...TTGTAGATGACTGAAGTATTGTAAGGCGCAGTCAGGAGCTCTGGACTCGAGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| 3UTR CCA 72 bp | CTCAGCCTGACCCCCTCTTCTGTAGATTCACAGAGCTaGGAGAGTTTGCTTAATCATCTCTCTGCACTACTC | + |
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Preference number: 3 (lower is better) Translates to: LSLTPSSVDSQS*ESLLNHLSALL Trigger: GAGTAGTGCAGAGAGATGATTAAGCAAACTCTCCCAGCTCTGTGAATCTACAGAAGAGGGGGTCAGGCTGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| 3UTR GCA 72 bp | CTCCTTTCTGCCGTTCTCGAGTCCAGAGCTCCTGACTaGGCCTTACAATACTTCAGTCATCTACAAAAGCAT | + |
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Preference number: 3 (lower is better) Translates to: LLSAVLESRAPD*ALQYFSHLQKH Trigger: ATGCTTTTGTAGATGACTGAAGTATTGTAAGGCGCAGTCAGGAGCTCTGGACTCGAGAACGGCAGAAAGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| 3UTR TCA 72 bp | ACTACTCCTTTCTGCCGTTCTCGAGTCCAGAGCTCCTaGCTGCGCCTTACAATACTTCAGTCATCTACAAAA | + |
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Preference number: 3 (lower is better) Translates to: TTPFCRSRVQSS*LRLTILQSSTK Trigger: TTTTGTAGATGACTGAAGTATTGTAAGGCGCAGTCAGGAGCTCTGGACTCGAGAACGGCAGAAAGGAGTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| 3UTR CCA 72 bp | GCGCCTTACAATACTTCAGTCATCTACAAAAGCATCTaGAAACGAGCTATTTTTAGCCAGCGCCAGGGACAA | + |
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Preference number: 3 (lower is better) Translates to: APYNTSVIYKSI*KRAIFSQRQGQ Trigger: TTGTCCCTGGCGCTGGCTAAAAATAGCTCGTTTCCAGATGCTTTTGTAGATGACTGAAGTATTGTAAGGCGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| 3UTR CAA 72 bp | AGGCGTGGGAGAGCGACACTCCCCTCCCTCCTGGGCTaGATCCCCACGTCTCTGCAAAGGCCACTAGGCATG | + |
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Preference number: 4 (lower is better) Translates to: RRGRATLPSLLG*IPTSLQRPLGM Trigger: CATGCCTAGTGGCCTTTGCAGAGACGTGGGGATCAAGCCCAGGAGGGAGGGGAGTGTCGCTCTCCCACGCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR GCA 90 bp | AAGAAGATGGTGGGGCCTTCTGCCCAGCATTCCTCAGTCCAGGCGTGGGAGAGCCACAGGAACTGCTCGTaGAGCAGCCGCAGCCGCCAT | + |
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Preference number: 4 (lower is better) Translates to: KKMVGPSAQHSSVQAWESHRNCS*SSRSRH Trigger: ATGGCGGCTGCGGCTGCTGCACGAGCAGTTCCTGTG...GCTCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCACCATCTTCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | TGGGGCCTTCTGCCCAGCATTCCTCAGTCCAGGCGTGGGAGAGCGACACTCCCCGAGAATCACTACAAGTaGCAGTGTTCGCCGCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: WGLLPSIPQSRRGRATLPENHYK*QCSPQA Trigger: GGCCTGCGGCGAACACTGCCACTTGTAGTGATTCTC...GGGGAGTGTCGCTCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | AACCACCTCAGCCTGACCCCCTCTTCTGTAGATTCACAGAGCTGGGAGAGTTTGTCGCCGCCGAGCCGCTaGCCTAACTGCAGAGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: NHLSLTPSSVDSQSWESLSPPSR*PNCRAR Trigger: CCTGGCTCTGCAGTTAGGCCAGCGGCTCGGCGGCGA...CAAACTCTCCCAGCTCTGTGAATCTACAGAAGAGGGGGTCAGGCTGAGGTGGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR TCA 90 bp | TGGGGCCTTCTGCCCAGCATTCCTCAGTCCAGGCGTGGGAGAGCGACACTCCCCTCTGGGGAATTACTTTaGCTTCCTGTGGCACTGACA | + |
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Preference number: 4 (lower is better) Translates to: WGLLPSIPQSRRGRATLPSGELL*LPVALT Trigger: TGTCAGTGCCACAGGAAGTCAAAGTAATTCCCCAGA...GGGGAGTGTCGCTCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR TCA 90 bp | GAAAGAAGATGGTGGGGCCTTCTGCCCAGCATTCCTCAGTCCAGGCGTGGGAGACTGGCCTTCAGCTCTTaGTTGTGCTGCCCCGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: ERRWWGLLPSIPQSRRGRLAFSS*LCCPED Trigger: ATCCTCGGGGCAGCACAATCAAGAGCTGAAGGCCAG...TCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCACCATCTTCTTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | CCCAGCATTCCTCAGTCCAGGCGTGGGAGAGCGACACTCCCCTCCCTCCTGGGCGTAGCTGGTCACAAGTaGATCCACAAAGCTGATCAT | + |
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Preference number: 4 (lower is better) Translates to: PSIPQSRRGRATLPSLLGVAGHK*IHKADH Trigger: ATGATCAGCTTTGTGGATCCACTTGTGACCAGCTAC...GCCCAGGAGGGAGGGGAGTGTCGCTCTCCCACGCCTGGACTGAGGAATGCTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | AGATGGTGGGGCCTTCTGCCCAGCATTCCTCAGTCCAGGCGTGGGAGAGCGACAGTATGCCATCTTCACTaGCATGGCTGTAGGTTTGTG | + |
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Preference number: 4 (lower is better) Translates to: RWWGLLPSIPQSRRGRATVCHLH*HGCRFV Trigger: CACAAACCTACAGCCATGCCAGTGAAGATGGCATAC...TGTCGCTCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCACCATCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR GCA 90 bp | TCAAGATCCAGGTCACAACCACCTCAGCCTGACCCCCTCTTCTGTAGATTCACAAGCCGCTGGCCTAACTaGAGAGCCAGGGTGGACTTG | + |
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Preference number: 4 (lower is better) Translates to: SRSRSQPPQPDPLFCRFTSRWPN*RARVDL Trigger: CAAGTCCACCCTGGCTCTGCAGTTAGGCCAGCGGCT...TGTGAATCTACAGAAGAGGGGGTCAGGCTGAGGTGGTTGTGACCTGGATCTTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | AGATGGTGGGGCCTTCTGCCCAGCATTCCTCAGTCCAGGCGTGGGAGAGCGACACAGACTCCTCCCACTTaGAAACATCAGATACTTCTA | + |
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Preference number: 4 (lower is better) Translates to: RWWGLLPSIPQSRRGRATQTPPT*KHQILL Trigger: TAGAAGTATCTGATGTTTCCAAGTGGGAGGAGTCTG...TGTCGCTCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCACCATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR GCA 90 bp | ATCATCTCTCTGCACTACTCCTTTCTGCCGTTCTCGAGTCCAGAGCTCCTGACTACTTTGCGTTTGTCATaGGGGTGTAGCTTGGCGGCC | + |
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Preference number: 4 (lower is better) Translates to: IISLHYSFLPFSSPELLTTLRLS*GCSLAA Trigger: GGCCGCCAAGCTACACCCGCATGACAAACGCAAAGT...AGTCAGGAGCTCTGGACTCGAGAACGGCAGAAAGGAGTAGTGCAGAGAGATGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR GCA 90 bp | CAAGATCCAGGTCACAACCACCTCAGCCTGACCCCCTCTTCTGTAGATTCACAGAGCTCCTGGCCACTTTaGGTTTGTCATGCGGGTGTA | + |
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Preference number: 4 (lower is better) Translates to: QDPGHNHLSLTPSSVDSQSSWPL*VCHAGV Trigger: TACACCCGCATGACAAACGCAAAGTGGCCAGGAGCT...CTGTGAATCTACAGAAGAGGGGGTCAGGCTGAGGTGGTTGTGACCTGGATCTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | GTTCTCGAGTCCAGAGCTCCTGACTGCGCCTTACAATACTTCAGTCATCTACAACATGCGGGTGTAGCTTaGCGGCCATTTCTGGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: VLESRAPDCALQYFSHLQHAGVA*RPFLGP Trigger: TGGACCCAGAAATGGCCGCCAAGCTACACCCGCATG...TTGTAGATGACTGAAGTATTGTAAGGCGCAGTCAGGAGCTCTGGACTCGAGAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | AGGTCACAACCACCTCAGCCTGACCCCCTCTTCTGTAGATTCACAGAGCTGGGAACACTTGCAAGCTCCTaGCCACTTTGCGTTTGTCAT | + |
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Preference number: 4 (lower is better) Translates to: RSQPPQPDPLFCRFTELGTLASS*PLCVCH Trigger: ATGACAAACGCAAAGTGGCCAGGAGCTTGCAAGTGT...TCCCAGCTCTGTGAATCTACAGAAGAGGGGGTCAGGCTGAGGTGGTTGTGACCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | GAAAGAAGATGGTGGGGCCTTCTGCCCAGCATTCCTCAGTCCAGGCGTGGGAGAGGTGCAAGTGAGATTTaGATTTTAAATGTGCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: ERRWWGLLPSIPQSRRGRGASEI*ILNVLP Trigger: GGGCAGCACATTTAAAATCCAAATCTCACTTGCACC...TCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCACCATCTTCTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR TCA 90 bp | AGGTCACAACCACCTCAGCCTGACCCCCTCTTCTGTAGATTCACAGAGCTGGGAGTGGTCAGGTACTCGTaGAATTCCTTGAAGCCAATT | + |
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Preference number: 4 (lower is better) Translates to: RSQPPQPDPLFCRFTELGVVRYS*NSLKPI Trigger: AATTGGCTTCAAGGAATTTCACGAGTACCTGACCAC...TCCCAGCTCTGTGAATCTACAGAAGAGGGGGTCAGGCTGAGGTGGTTGTGACCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR GCA 90 bp | AACCACCTCAGCCTGACCCCCTCTTCTGTAGATTCACAGAGCTGGGAGAGTTTGAAGCTGATCATGTGGTaGTGGCACATCTTCTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: NHLSLTPSSVDSQSWESLKLIMW*WHIFCS Trigger: AGAGCAGAAGATGTGCCAGCACCACATGATCAGCTT...CAAACTCTCCCAGCTCTGTGAATCTACAGAAGAGGGGGTCAGGCTGAGGTGGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | TCAAGATCCAGGTCACAACCACCTCAGCCTGACCCCCTCTTCTGTAGATTCACACTGATCATGTGGTGCTaGCACATCTTCTGCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: SRSRSQPPQPDPLFCRFTLIMWC*HIFCSW Trigger: CCAAGAGCAGAAGATGTGCCAGCACCACATGATCAG...TGTGAATCTACAGAAGAGGGGGTCAGGCTGAGGTGGTTGTGACCTGGATCTTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR TCA 90 bp | AACCACCTCAGCCTGACCCCCTCTTCTGTAGATTCACAGAGCTGGGAGAGTTTGTTCCTTGAAGCCAATTaGCTGGAAGATACCGTGTTG | + |
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Preference number: 4 (lower is better) Translates to: NHLSLTPSSVDSQSWESLFLEAN*LEDTVL Trigger: CAACACGGTATCTTCCAGTCAATTGGCTTCAAGGAA...CAAACTCTCCCAGCTCTGTGAATCTACAGAAGAGGGGGTCAGGCTGAGGTGGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | TCAAGATCCAGGTCACAACCACCTCAGCCTGACCCCCTCTTCTGTAGATTCACACACATCTTCTGCTCTTaGGCAGAGACCTTATTGGTG | + |
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Preference number: 4 (lower is better) Translates to: SRSRSQPPQPDPLFCRFTHIFCS*AETLLV Trigger: CACCAATAAGGTCTCTGCCCAAGAGCAGAAGATGTG...TGTGAATCTACAGAAGAGGGGGTCAGGCTGAGGTGGTTGTGACCTGGATCTTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| 3UTR CAA 72 bp | ACCCCCTCTTCTGTAGATTCACAGAGCTGGGAGAGTTaGCTTAATCATCTCTCTGCACTACTCCTTTCTGCC | + |
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Preference number: 4 (lower is better) Translates to: TPSSVDSQSWES*LNHLSALLLSA Trigger: GGCAGAAAGGAGTAGTGCAGAGAGATGATTAAGCAAACTCTCCCAGCTCTGTGAATCTACAGAAGAGGGGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | TTAGCCAGCGCCAGGGACAAGAACGCTCTTTTAAAGGATGCACTGAATCTTGGTACAAAGCTGATCATGTaGTGCTGGCACATCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: LASARDKNALLKDALNLGTKLIM*CWHIFC Trigger: GCAGAAGATGTGCCAGCACCACATGATCAGCTTTGT...ACCAAGATTCAGTGCATCCTTTAAAAGAGCGTTCTTGTCCCTGGCGCTGGCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | TTAGCCAGCGCCAGGGACAAGAACGCTCTTTTAAAGGATGCACTGAATCTTGGTCTGGTTACTAGTCTCTaGTGTGCATTTCCCCTCAGT | + |
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Preference number: 4 (lower is better) Translates to: LASARDKNALLKDALNLGLVTSL*CAFPLS Trigger: ACTGAGGGGAAATGCACACCAGAGACTAGTAACCAG...ACCAAGATTCAGTGCATCCTTTAAAAGAGCGTTCTTGTCCCTGGCGCTGGCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR TCA 90 bp | TTAGCCAGCGCCAGGGACAAGAACGCTCTTTTAAAGGATGCACTGAATCTTGGTATGGCTGTAGGTTTGTaGCCCTGGATGAAACTTTGT | + |
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Preference number: 4 (lower is better) Translates to: LASARDKNALLKDALNLGMAVGL*PWMKLC Trigger: ACAAAGTTTCATCCAGGGTCACAAACCTACAGCCAT...ACCAAGATTCAGTGCATCCTTTAAAAGAGCGTTCTTGTCCCTGGCGCTGGCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | GTTCTCGAGTCCAGAGCTCCTGACTGCGCCTTACAATACTTCAGTCATCTACAATTCCTCCCACCACAATaGGAATTTTGTCTCGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: VLESRAPDCALQYFSHLQFLPPQ*EFCLEQ Trigger: TTGCTCGAGACAAAATTCCCATTGTGGTGGGAGGAA...TTGTAGATGACTGAAGTATTGTAAGGCGCAGTCAGGAGCTCTGGACTCGAGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR TCA 90 bp | GTTCTCGAGTCCAGAGCTCCTGACTGCGCCTTACAATACTTCAGTCATCTACAAACTCGTGAAATTCCTTaGAGCCAATTGACTGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: VLESRAPDCALQYFSHLQTREIP*SQLTGR Trigger: TCTTCCAGTCAATTGGCTTCAAGGAATTTCACGAGT...TTGTAGATGACTGAAGTATTGTAAGGCGCAGTCAGGAGCTCTGGACTCGAGAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR GCA 90 bp | AGAGTTTGCTTAATCATCTCTCTGCACTACTCCTTTCTGCCGTTCTCGAGTCCAGTTTCTTCAAACACTTaGAAGCTCCTGGCCACTTTG | + |
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Preference number: 4 (lower is better) Translates to: RVCLIISLHYSFLPFSSPVSSNT*KLLATL Trigger: CAAAGTGGCCAGGAGCTTGCAAGTGTTTGAAGAAAC...TGGACTCGAGAACGGCAGAAAGGAGTAGTGCAGAGAGATGATTAAGCAAACTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | ATCATCTCTCTGCACTACTCCTTTCTGCCGTTCTCGAGTCCAGAGCTCCTGACTATTCAATGTAATAATTaGTTCCTCCCACCACAATGG | + |
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Preference number: 4 (lower is better) Translates to: IISLHYSFLPFSSPELLTIQCNN*FLPPQW Trigger: CCATTGTGGTGGGAGGAACCAATTATTACATTGAAT...AGTCAGGAGCTCTGGACTCGAGAACGGCAGAAAGGAGTAGTGCAGAGAGATGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | AGAGTTTGCTTAATCATCTCTCTGCACTACTCCTTTCTGCCGTTCTCGAGTCCATGCATTTCCCCTCAGTaGTCAGGTACTCGTGAAATT | + |
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Preference number: 4 (lower is better) Translates to: RVCLIISLHYSFLPFSSPCISPQ*SGTREI Trigger: AATTTCACGAGTACCTGACCACTGAGGGGAAATGCA...TGGACTCGAGAACGGCAGAAAGGAGTAGTGCAGAGAGATGATTAAGCAAACTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CCA 90 bp | CTTACAATACTTCAGTCATCTACAAAAGCATCTGGAAACGAGCTATTTTTAGCCATTTCTGGGTCCACCTaGCTTAGCCGTTTATGGAGT | + |
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Preference number: 4 (lower is better) Translates to: LTILQSSTKASGNELFLAISGST*LSRLWS Trigger: ACTCCATAAACGGCTAAGCCAGGTGGACCCAGAAAT...GGCTAAAAATAGCTCGTTTCCAGATGCTTTTGTAGATGACTGAAGTATTGTAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS GCA 90 bp | ATGGAGTCGGCGCTGACGATCTCGCCGCCGAGCCGCTGGCCTAACTaGAGAGCCAGGGTGGACTTGCCAGTCCCAGTAGCCCCGAGAATC | + |
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Preference number: 5 (lower is better) Translates to: MESALTISPPSRWPN*RARVDLPVPVAPRI Trigger: GATTCTCGGGGCTACTGGGACTGGCAAGTCCACCCTGGCTCTGCAGTTAGGCCAGCGGCTCGGCGGCGAGATCGTCAGCGCCGACTCCAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CAA 90 bp | AGATGGTGGGGCCTTCTGCCCAGCATTCCTCAGTCCAGGCGTGGGAGAGCGACATCATGCGGGTGTAGCTaGGCGGCCATTTCTGGGTCC | + |
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Preference number: 5 (lower is better) Translates to: RWWGLLPSIPQSRRGRATSCGCS*AAISGS Trigger: GGACCCAGAAATGGCCGCCAAGCTACACCCGCATGA...TGTCGCTCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCACCATCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CAA 90 bp | CCCAGCATTCCTCAGTCCAGGCGTGGGAGAGCGACACTCCCCTCCCTCCTGGGCTGGGCAGAGACCTTATaGGTGATGATGTCTAGCCCT | + |
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Preference number: 5 (lower is better) Translates to: PSIPQSRRGRATLPSLLGWAETL*VMMSSP Trigger: AGGGCTAGACATCATCACCAATAAGGTCTCTGCCCA...GCCCAGGAGGGAGGGGAGTGTCGCTCTCCCACGCCTGGACTGAGGAATGCTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CCA 90 bp | CAGGGTGGACTTGCCAGTCCCAGTAGCCCCGAGAATCACTACAAGTaGCAGTGTTCGCCGCAGGCCTCGGAATCCAGAGCTCACAGGAAC | + |
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Preference number: 5 (lower is better) Translates to: QGGLASPSSPENHYK*QCSPQASESRAHRN Trigger: GTTCCTGTGAGCTCTGGATTCCGAGGCCTGCGGCGAACACTGCCACTTGTAGTGATTCTCGGGGCTACTGGGACTGGCAAGTCCACCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CAA 90 bp | GAAAGAAGATGGTGGGGCCTTCTGCCCAGCATTCCTCAGTCCAGGCGTGGGAGACTGGCCACTTTGCGTTaGTCATGCGGGTGTAGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: ERRWWGLLPSIPQSRRGRLATLR*SCGCSL Trigger: CAAGCTACACCCGCATGACAAACGCAAAGTGGCCAG...TCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCACCATCTTCTTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CAA 90 bp | CCCAGCATTCCTCAGTCCAGGCGTGGGAGAGCGACACTCCCCTCCCTCCTGGGCACCCTGGATGAAACTTaGTACTATATTGAGAGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: PSIPQSRRGRATLPSLLGTLDET*YYIESR Trigger: CCTGCTCTCAATATAGTACAAAGTTTCATCCAGGGT...GCCCAGGAGGGAGGGGAGTGTCGCTCTCCCACGCCTGGACTGAGGAATGCTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CAA 90 bp | AAGAAGATGGTGGGGCCTTCTGCCCAGCATTCCTCAGTCCAGGCGTGGGAGAGCGTCTGGGGAATTACTTaGACTTCCTGTGGCACTGAC | + |
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Preference number: 5 (lower is better) Translates to: KKMVGPSAQHSSVQAWESVWGIT*TSCGTD Trigger: GTCAGTGCCACAGGAAGTCAAAGTAATTCCCCAGAC...GCTCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCACCATCTTCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CCA 90 bp | CTTGCAAGCTCCTGGCCACTTTGCGTTTGTCATGCGGGTGTAGCTTaGCGGCCATTTCTGGGTCCACCTGGCTTAGCCGTTTATGGAGTT | + |
|
Preference number: 5 (lower is better) Translates to: LASSWPLCVCHAGVA*RPFLGPPGLAVYGV Trigger: AACTCCATAAACGGCTAAGCCAGGTGGACCCAGAAATGGCCGCCAAGCTACACCCGCATGACAAACGCAAAGTGGCCAGGAGCTTGCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CAA 90 bp | GTTCTCGAGTCCAGAGCTCCTGACTGCGCCTTACAATACTTCAGTCATCTACAAAGAGCCAGGGTGGACTaGCCAGTCCCAGTAGCCCCG | + |
|
Preference number: 5 (lower is better) Translates to: VLESRAPDCALQYFSHLQRARVD*PVPVAP Trigger: CGGGGCTACTGGGACTGGCAAGTCCACCCTGGCTCT...TTGTAGATGACTGAAGTATTGTAAGGCGCAGTCAGGAGCTCTGGACTCGAGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CAA 90 bp | GAAAGAAGATGGTGGGGCCTTCTGCCCAGCATTCCTCAGTCCAGGCGTGGGAGAGCACATCTTCTGCTCTaGGGCAGAGACCTTATTGGT | + |
|
Preference number: 5 (lower is better) Translates to: ERRWWGLLPSIPQSRRGRAHLLL*GRDLIG Trigger: ACCAATAAGGTCTCTGCCCAAGAGCAGAAGATGTGC...TCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCACCATCTTCTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CAA 90 bp | AGATGGTGGGGCCTTCTGCCCAGCATTCCTCAGTCCAGGCGTGGGAGAGCGACATGTTTCTTCAAACACTaGCAAGCTCCTGGCCACTTT | + |
|
Preference number: 5 (lower is better) Translates to: RWWGLLPSIPQSRRGRATCFFKH*QAPGHF Trigger: AAAGTGGCCAGGAGCTTGCAAGTGTTTGAAGAAACA...TGTCGCTCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCACCATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CAA 90 bp | AAGAAGATGGTGGGGCCTTCTGCCCAGCATTCCTCAGTCCAGGCGTGGGAGAGCACAGACTCCTCCCACTaGGAAACATCAGATACTTCT | + |
|
Preference number: 5 (lower is better) Translates to: KKMVGPSAQHSSVQAWESTDSSH*ETSDTS Trigger: AGAAGTATCTGATGTTTCCAAGTGGGAGGAGTCTGT...GCTCTCCCACGCCTGGACTGAGGAATGCTGGGCAGAAGGCCCCACCATCTTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CAA 90 bp | TCAAGATCCAGGTCACAACCACCTCAGCCTGACCCCCTCTTCTGTAGATTCACAACTGGCCTTCAGCTCTaGATTGTGCTGCCCCGAGGA | + |
|
Preference number: 5 (lower is better) Translates to: SRSRSQPPQPDPLFCRFTTGLQL*IVLPRG Trigger: TCCTCGGGGCAGCACAATCAAGAGCTGAAGGCCAGT...TGTGAATCTACAGAAGAGGGGGTCAGGCTGAGGTGGTTGTGACCTGGATCTTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS TCA 90 bp | GATTCCCCCTCGATGCGTTCCGGGTCACAGTCTGGGGAATTACTTTaGCTTCCTGTGGCACTGACAGCGTCTAAGTCCAACCTTCTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: DSPSMRSGSQSGELL*LPVALTASKSNLLL Trigger: AAGAAGAAGGTTGGACTTAGACGCTGTCAGTGCCACAGGAAGTCAAAGTAATTCCCCAGACTGTGACCCGGAACGCATCGAGGGGGAATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CCA 90 bp | CGTTGCTTTGTTCCTAAAGTCCACCACGGTGTAGCTGGTCACAAGTaGATCCACAAAGCTGATCATGTGGTGCTGGCACATCTTCTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: RCFVPKVHHGVAGHK*IHKADHVVLAHLLL Trigger: GAGCAGAAGATGTGCCAGCACCACATGATCAGCTTTGTGGATCCACTTGTGACCAGCTACACCGTGGTGGACTTTAGGAACAAAGCAACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CCA 90 bp | AGCATGTCATCCACTCTTTTATCCAAGCGCTCATCTAGAACTGCCTaGTCAGCATGGAGCCAGAGGATGCATGGGTTAGGGAACCTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: SMSSTLLSKRSSRTA*SAWSQRMHGLGNLR Trigger: TCTCAGGTTCCCTAACCCATGCATCCTCTGGCTCCATGCTGACCAGGCAGTTCTAGATGAGCGCTTGGATAAAAGAGTGGATGACATGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CAA 90 bp | GAGTCCAGAGCTCCTGACTGCGCCTTACAATACTTCAGTCATCTACAAAAGCATAAGCTCCTGGCCACTTaGCGTTTGTCATGCGGGTGT | + |
|
Preference number: 5 (lower is better) Translates to: ESRAPDCALQYFSHLQKHKLLAT*RLSCGC Trigger: ACACCCGCATGACAAACGCAAAGTGGCCAGGAGCTT...ATGCTTTTGTAGATGACTGAAGTATTGTAAGGCGCAGTCAGGAGCTCTGGACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS TCA 90 bp | GCGGCCATTTCTGGGTCCACCTGGCTTAGCCGTTTATGGAGTTCATaGCCATCTTCCTTTTCAAGCTCTACTTTCCGATCAACCACTTTC | + |
|
Preference number: 5 (lower is better) Translates to: AAISGSTWLSRLWSS*PSSFSSSTFRSTTF Trigger: GAAAGTGGTTGATCGGAAAGTAGAGCTTGAAAAGGAAGATGGTCATGAACTCCATAAACGGCTAAGCCAGGTGGACCCAGAAATGGCCGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS GCA 90 bp | ACAAGTGGATCCACAAAGCTGATCATGTGGTGCTGGCACATCTTCTaGTCTTGGGCAGAGACCTTATTGGTGATGATGTCTAGCCCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: TSGSTKLIMWCWHIF*SWAETLLVMMSSPS Trigger: TGAAGGGCTAGACATCATCACCAATAAGGTCTCTGCCCAAGAGCAGAAGATGTGCCAGCACCACATGATCAGCTTTGTGGATCCACTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS TCA 90 bp | GTTCCGGGTCACAGTCTGGGGAATTACTTTGACTTCCTGTGGCACTaGCAGCGTCTAAGTCCAACCTTCTTCTTTTCTTCAATTGGTGCA | + |
|
Preference number: 5 (lower is better) Translates to: VPGHSLGNYFDFLWH*QRLSPTFFFSSIGA Trigger: TGCACCAATTGAAGAAAAGAAGAAGGTTGGACTTAGACGCTGTCAGTGCCACAGGAAGTCAAAGTAATTCCCCAGACTGTGACCCGGAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CAA 90 bp | GAGTCCAGAGCTCCTGACTGCGCCTTACAATACTTCAGTCATCTACAAAAGCATTTGTTCTCACTTTCATaGTATGCCATCTTCACTGGC | + |
|
Preference number: 5 (lower is better) Translates to: ESRAPDCALQYFSHLQKHLFSLS*YAIFTG Trigger: GCCAGTGAAGATGGCATACAATGAAAGTGAGAACAA...ATGCTTTTGTAGATGACTGAAGTATTGTAAGGCGCAGTCAGGAGCTCTGGACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CAA 90 bp | GAGTCCAGAGCTCCTGACTGCGCCTTACAATACTTCAGTCATCTACAAAAGCATACCACAATGGGAATTTaGTCTCGAGCAAAAATATCT | + |
|
Preference number: 5 (lower is better) Translates to: ESRAPDCALQYFSHLQKHTTMGI*SRAKIS Trigger: AGATATTTTTGCTCGAGACAAAATTCCCATTGTGGT...ATGCTTTTGTAGATGACTGAAGTATTGTAAGGCGCAGTCAGGAGCTCTGGACTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS-3UTR CAA 90 bp | AGAGTTTGCTTAATCATCTCTCTGCACTACTCCTTTCTGCCGTTCTCGAGTCCAATATCTCTTAGTTACTaGTTTCAGAGCCTCAATACC | + |
|
Preference number: 5 (lower is better) Translates to: RVCLIISLHYSFLPFSSPISLSY*FQSLNT Trigger: GGTATTGAGGCTCTGAAACAAGTAACTAAGAGATAT...TGGACTCGAGAACGGCAGAAAGGAGTAGTGCAGAGAGATGATTAAGCAAACTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS GCA 72 bp | GCGCTGACGATCTCGCCGCCGAGCCGCTGGCCTAACTaGAGAGCCAGGGTGGACTTGCCAGTCCCAGTAGCC | + |
|
Preference number: 6 (lower is better) Translates to: ALTISPPSRWPN*RARVDLPVPVA Trigger: GGCTACTGGGACTGGCAAGTCCACCCTGGCTCTGCAGTTAGGCCAGCGGCTCGGCGGCGAGATCGTCAGCGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CCA 72 bp | ATGGAGTCGGCGCTGACGATCTCGCCGCCGAGCCGCTaGCCTAACTGCAGAGCCAGGGTGGACTTGCCAGTC | + |
|
Preference number: 6 (lower is better) Translates to: MESALTISPPSR*PNCRARVDLPV Trigger: GACTGGCAAGTCCACCCTGGCTCTGCAGTTAGGCCAGCGGCTCGGCGGCGAGATCGTCAGCGCCGACTCCAT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS TCA 72 bp | TGTCTAGCCCTTCATAGACCTGCATGGAGTCGGCGCTaGCGATCTCGCCGCCGAGCCGCTGGCCTAACTGCA | + |
|
Preference number: 6 (lower is better) Translates to: CLALHRPAWSRR*RSRRRAAGLTA Trigger: TGCAGTTAGGCCAGCGGCTCGGCGGCGAGATCGTCAGCGCCGACTCCATGCAGGTCTATGAAGGGCTAGACA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CAA 90 bp | ATCTCGCCGCCGAGCCGCTGGCCTAACTGCAGAGCCAGGGTGGACTaGCCAGTCCCAGTAGCCCCGAGAATCACTACAAGTGGCAGTGTT | + |
|
Preference number: 6 (lower is better) Translates to: ISPPSRWPNCRARVD*PVPVAPRITTSGSV Trigger: AACACTGCCACTTGTAGTGATTCTCGGGGCTACTGGGACTGGCAAGTCCACCCTGGCTCTGCAGTTAGGCCAGCGGCTCGGCGGCGAGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CAA 72 bp | CCGAGCCGCTGGCCTAACTGCAGAGCCAGGGTGGACTaGCCAGTCCCAGTAGCCCCGAGAATCACTACAAGT | + |
|
Preference number: 6 (lower is better) Translates to: PSRWPNCRARVD*PVPVAPRITTS Trigger: ACTTGTAGTGATTCTCGGGGCTACTGGGACTGGCAAGTCCACCCTGGCTCTGCAGTTAGGCCAGCGGCTCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CCA 72 bp | CTTGCCAGTCCCAGTAGCCCCGAGAATCACTACAAGTaGCAGTGTTCGCCGCAGGCCTCGGAATCCAGAGCT | + |
|
Preference number: 6 (lower is better) Translates to: LASPSSPENHYK*QCSPQASESRA Trigger: AGCTCTGGATTCCGAGGCCTGCGGCGAACACTGCCACTTGTAGTGATTCTCGGGGCTACTGGGACTGGCAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CAA 72 bp | CTCCTGGCCACTTTGCGTTTGTCATGCGGGTGTAGCTaGGCGGCCATTTCTGGGTCCACCTGGCTTAGCCGT | + |
|
Preference number: 6 (lower is better) Translates to: LLATLRLSCGCS*AAISGSTWLSR Trigger: ACGGCTAAGCCAGGTGGACCCAGAAATGGCCGCCAAGCTACACCCGCATGACAAACGCAAAGTGGCCAGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CCA 72 bp | TCCTGGCCACTTTGCGTTTGTCATGCGGGTGTAGCTTaGCGGCCATTTCTGGGTCCACCTGGCTTAGCCGTT | + |
|
Preference number: 6 (lower is better) Translates to: SWPLCVCHAGVA*RPFLGPPGLAV Trigger: AACGGCTAAGCCAGGTGGACCCAGAAATGGCCGCCAAGCTACACCCGCATGACAAACGCAAAGTGGCCAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CAA 90 bp | ACTTGCAAGCTCCTGGCCACTTTGCGTTTGTCATGCGGGTGTAGCTaGGCGGCCATTTCTGGGTCCACCTGGCTTAGCCGTTTATGGAGT | + |
|
Preference number: 6 (lower is better) Translates to: TCKLLATLRLSCGCS*AAISGSTWLSRLWS Trigger: ACTCCATAAACGGCTAAGCCAGGTGGACCCAGAAATGGCCGCCAAGCTACACCCGCATGACAAACGCAAAGTGGCCAGGAGCTTGCAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS TCA 72 bp | CCACGGTGTAGCTGGTCACAAGTGGATCCACAAAGCTaGTCATGTGGTGCTGGCACATCTTCTGCTCTTGGG | + |
|
Preference number: 6 (lower is better) Translates to: PRCSWSQVDPQS*SCGAGTSSALG Trigger: CCCAAGAGCAGAAGATGTGCCAGCACCACATGATCAGCTTTGTGGATCCACTTGTGACCAGCTACACCGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CAA 72 bp | TCTTCAAACACTTGCAAGCTCCTGGCCACTTTGCGTTaGTCATGCGGGTGTAGCTTGGCGGCCATTTCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: SSNTCKLLATLR*SCGCSLAAISG Trigger: CCCAGAAATGGCCGCCAAGCTACACCCGCATGACAAACGCAAAGTGGCCAGGAGCTTGCAAGTGTTTGAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS TCA 72 bp | TCGATGCGTTCCGGGTCACAGTCTGGGGAATTACTTTaGCTTCCTGTGGCACTGACAGCGTCTAAGTCCAAC | + |
|
Preference number: 6 (lower is better) Translates to: SMRSGSQSGELL*LPVALTASKSN Trigger: GTTGGACTTAGACGCTGTCAGTGCCACAGGAAGTCAAAGTAATTCCCCAGACTGTGACCCGGAACGCATCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CCA 72 bp | TCCACTCTTTTATCCAAGCGCTCATCTAGAACTGCCTaGTCAGCATGGAGCCAGAGGATGCATGGGTTAGGG | + |
|
Preference number: 6 (lower is better) Translates to: STLLSKRSSRTA*SAWSQRMHGLG Trigger: CCCTAACCCATGCATCCTCTGGCTCCATGCTGACCAGGCAGTTCTAGATGAGCGCTTGGATAAAAGAGTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CCA 72 bp | GTTCCTAAAGTCCACCACGGTGTAGCTGGTCACAAGTaGATCCACAAAGCTGATCATGTGGTGCTGGCACAT | + |
|
Preference number: 6 (lower is better) Translates to: VPKVHHGVAGHK*IHKADHVVLAH Trigger: ATGTGCCAGCACCACATGATCAGCTTTGTGGATCCACTTGTGACCAGCTACACCGTGGTGGACTTTAGGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CCA 72 bp | AAGCTGATCATGTGGTGCTGGCACATCTTCTGCTCTTaGGCAGAGACCTTATTGGTGATGATGTCTAGCCCT | + |
|
Preference number: 6 (lower is better) Translates to: KLIMWCWHIFCS*AETLLVMMSSP Trigger: AGGGCTAGACATCATCACCAATAAGGTCTCTGCCCAAGAGCAGAAGATGTGCCAGCACCACATGATCAGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CCA 72 bp | GTCACAAGTGGATCCACAAAGCTGATCATGTGGTGCTaGCACATCTTCTGCTCTTGGGCAGAGACCTTATTG | + |
|
Preference number: 6 (lower is better) Translates to: VTSGSTKLIMWC*HIFCSWAETLL Trigger: CAATAAGGTCTCTGCCCAAGAGCAGAAGATGTGCCAGCACCACATGATCAGCTTTGTGGATCCACTTGTGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS TCA 72 bp | TCTGGTGTGCATTTCCCCTCAGTGGTCAGGTACTCGTaGAATTCCTTGAAGCCAATTGACTGGAAGATACCG | + |
|
Preference number: 6 (lower is better) Translates to: SGVHFPSVVRYS*NSLKPIDWKIP Trigger: CGGTATCTTCCAGTCAATTGGCTTCAAGGAATTTCACGAGTACCTGACCACTGAGGGGAAATGCACACCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS GCA 72 bp | TCCACAAAGCTGATCATGTGGTGCTGGCACATCTTCTaGTCTTGGGCAGAGACCTTATTGGTGATGATGTCT | + |
|
Preference number: 6 (lower is better) Translates to: STKLIMWCWHIF*SWAETLLVMMS Trigger: AGACATCATCACCAATAAGGTCTCTGCCCAAGAGCAGAAGATGTGCCAGCACCACATGATCAGCTTTGTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS TCA 72 bp | TCTGGGTCCACCTGGCTTAGCCGTTTATGGAGTTCATaGCCATCTTCCTTTTCAAGCTCTACTTTCCGATCA | + |
|
Preference number: 6 (lower is better) Translates to: SGSTWLSRLWSS*PSSFSSSTFRS Trigger: TGATCGGAAAGTAGAGCTTGAAAAGGAAGATGGTCATGAACTCCATAAACGGCTAAGCCAGGTGGACCCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS TCA 72 bp | CACAGTCTGGGGAATTACTTTGACTTCCTGTGGCACTaGCAGCGTCTAAGTCCAACCTTCTTCTTTTCTTCA | + |
|
Preference number: 6 (lower is better) Translates to: HSLGNYFDFLWH*QRLSPTFFFSS Trigger: TGAAGAAAAGAAGAAGGTTGGACTTAGACGCTGTCAGTGCCACAGGAAGTCAAAGTAATTCCCCAGACTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS GCA 72 bp | TTTGTCTCGAGCAAAAATATCTTCAATCAGGGCCGTTaGTTTGTTCCTAAAGTCCACCACGGTGTAGCTGGT | + |
|
Preference number: 6 (lower is better) Translates to: FVSSKNIFNQGR*FVPKVHHGVAG Trigger: ACCAGCTACACCGTGGTGGACTTTAGGAACAAAGCAACGGCCCTGATTGAAGATATTTTTGCTCGAGACAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CAA 72 bp | ATATTGAGAGCAGGTTCCAGAACAGACTCCTCCCACTaGGAAACATCAGATACTTCTAAGCCATATACCGGG | + |
|
Preference number: 6 (lower is better) Translates to: ILRAGSRTDSSH*ETSDTSKPYTG Trigger: CCCGGTATATGGCTTAGAAGTATCTGATGTTTCCAAGTGGGAGGAGTCTGTTCTGGAACCTGCTCTCAATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS TCA 72 bp | ATTTCCCCTCAGTGGTCAGGTACTCGTGAAATTCCTTaGAGCCAATTGACTGGAAGATACCGTGTTGATAGT | + |
|
Preference number: 6 (lower is better) Translates to: ISPQWSGTREIP*SQLTGRYRVDS Trigger: ACTATCAACACGGTATCTTCCAGTCAATTGGCTTCAAGGAATTTCACGAGTACCTGACCACTGAGGGGAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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| CDS CCA 72 bp | ACTTGTTTCAGAGCCTCAATACCTTTCTTTAGAAGCTaGTTACTAGTCTCTGGTGTGCATTTCCCCTCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: TCFRASIPFFRS*LLVSGVHFPSV Trigger: CACTGAGGGGAAATGCACACCAGAGACTAGTAACCAGCTTCTAAAGAAAGGTATTGAGGCTCTGAAACAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102649.4 |
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