RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRIR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041203

Ensembl transcript IDs: ENSMUST00000047281.10

Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCGCCTTCGTTTCCTTCTGTGTATCAGTCCTCCAGAGAAGGCTGCTaGCGGAACCGCATTAAATATTATGTACATCGCAGAGAGTCCCAG +
Preference number: 1 (lower is better)
Translates to: APSFPSVYQSSREGC*RNRIKYYVHRRESQ
Trigger: CTGGGACTCTCTGCGATGTACATAATATTTAATGCGGTTCCGGCAGCAGCCTTCTCTGGAGGACTGATACACAGAAGGAAACGAAGGCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
3UTR GCA 90 bp CAAGCGCCTTCGTTTCCTTCTGTGTATCAGTCCTCCAGAGAAGGCTaGTGCCGGAACCGCATTAAATATTATGTACATCGCAGAGAGTCC +
Preference number: 1 (lower is better)
Translates to: QAPSFPSVYQSSREG*CRNRIKYYVHRRES
Trigger: GGACTCTCTGCGATGTACATAATATTTAATGCGGTTCCGGCAGCAGCCTTCTCTGGAGGACTGATACACAGAAGGAAACGAAGGCGCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
3UTR GCA 72 bp TCGTTTCCTTCTGTGTATCAGTCCTCCAGAGAAGGCTaGTGCCGGAACCGCATTAAATATTATGTACATCGC +
Preference number: 3 (lower is better)
Translates to: SFPSVYQSSREG*CRNRIKYYVHR
Trigger: GCGATGTACATAATATTTAATGCGGTTCCGGCAGCAGCCTTCTCTGGAGGACTGATACACAGAAGGAAACGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
3UTR GCA 72 bp TTTCCTTCTGTGTATCAGTCCTCCAGAGAAGGCTGCTaGCGGAACCGCATTAAATATTATGTACATCGCAGA +
Preference number: 3 (lower is better)
Translates to: FPSVYQSSREGC*RNRIKYYVHRR
Trigger: TCTGCGATGTACATAATATTTAATGCGGTTCCGGCAGCAGCCTTCTCTGGAGGACTGATACACAGAAGGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR GCA 90 bp AGAGTCCTGGAGAACGGTCTGCGGCCACAGCAAGCGCCTTCGTTTCCTTCTGTGGGGGGTGGCTCCTCCTaGCGCTGCCGCTGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: RVLENGLRPQQAPSFPSVGGGSS*RCRCSS
Trigger: GGAGGAGCAGCGGCAGCGGCAGGAGGAGCCACCCCC...CACAGAAGGAAACGAAGGCGCTTGCTGTGGCCGCAGACCGTTCTCCAGGACTCT
66% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR GCA 90 bp CTTCGTTTCCTTCTGTGTATCAGTCCTCCAGAGAAGGCTGCTGCCGGAACCGCATCCTGCCGCTGCCGCTaGTCCTCCTCCATCTTCCGC +
Preference number: 4 (lower is better)
Translates to: LRFLLCISPPEKAAAGTASCRCR*SSSIFR
Trigger: GCGGAAGATGGAGGAGGAGCAGCGGCAGCGGCAGGA...TGCGGTTCCGGCAGCAGCCTTCTCTGGAGGACTGATACACAGAAGGAAACGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR CCA 90 bp AAGGCTGCTGCCGGAACCGCATTAAATATTATGTACATCGCAGAGAGTCCCAGGGCTGAGCGTGGGGCCTaGGCCGCCCTTCCTCTTCGG +
Preference number: 4 (lower is better)
Translates to: KAAAGTALNIMYIAESPRAERGA*AALPLR
Trigger: CCGAAGAGGAAGGGCGGCCCAGGCCCCACGCTCAGC...CCTGGGACTCTCTGCGATGTACATAATATTTAATGCGGTTCCGGCAGCAGCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR CCA 90 bp AGAGAGAGCAAGGTGATGGGAAGAAAGGGCACAGTAAACCACTGGTCTAAAAGTCCTCTTCGGATTCCCTaGGCCCGCCGCGGCGGAGGC +
Preference number: 4 (lower is better)
Translates to: RESKVMGRKGTVNHWSKSPLRIP*ARRGGG
Trigger: GCCTCCGCCGCGGCGGGCCCAGGGAATCCGAAGAGG...ACTTTTAGACCAGTGGTTTACTGTGCCCTTTCTTCCCATCACCTTGCTCTCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR TCA 90 bp CAGCAAGCGCCTTCGTTTCCTTCTGTGTATCAGTCCTCCAGAGAAGGCTGCTGCCCTCCATCTTCCGCTTaGACAGCTCCAGGAAGCTGC +
Preference number: 4 (lower is better)
Translates to: QQAPSFPSVYQSSREGCCPPSSA*TAPGSC
Trigger: GCAGCTTCCTGGAGCTGTTCAAGCGGAAGATGGAGG...GCAGCAGCCTTCTCTGGAGGACTGATACACAGAAGGAAACGAAGGCGCTTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR CCA 90 bp AGAGTCCTGGAGAACGGTCTGCGGCCACAGCAAGCGCCTTCGTTTCCTTCTGTGCTTCTGCCATGTACTTaGCCCATGCGTCACCTTTAC +
Preference number: 4 (lower is better)
Translates to: RVLENGLRPQQAPSFPSVLLPCT*PMRHLY
Trigger: GTAAAGGTGACGCATGGGCCAAGTACATGGCAGAAG...CACAGAAGGAAACGAAGGCGCTTGCTGTGGCCGCAGACCGTTCTCCAGGACTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR TCA 90 bp CAGCAAGCGCCTTCGTTTCCTTCTGTGTATCAGTCCTCCAGAGAAGGCTGCTGCCTACTATTCCCGTCTTaGGGGCTAGTTTGTTCCCGC +
Preference number: 4 (lower is better)
Translates to: QQAPSFPSVYQSSREGCCLLFPS*GLVCSR
Trigger: GCGGGAACAAACTAGCCCTCAAGACGGGAATAGTAG...GCAGCAGCCTTCTCTGGAGGACTGATACACAGAAGGAAACGAAGGCGCTTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR CCA 90 bp GCGCCTTCGTTTCCTTCTGTGTATCAGTCCTCCAGAGAAGGCTGCTGCCGGAACTCATCCCCGCACTGGTaGGCTTTGTACTTTTTCACT +
Preference number: 4 (lower is better)
Translates to: APSFPSVYQSSREGCCRNSSPHW*ALYFFT
Trigger: AGTGAAAAAGTACAAAGCCCACCAGTGCGGGGATGA...GTTCCGGCAGCAGCCTTCTCTGGAGGACTGATACACAGAAGGAAACGAAGGCGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR CCA 90 bp CAAGCGCCTTCGTTTCCTTCTGTGTATCAGTCCTCCAGAGAAGGCTGCTGCCGGTCATCATCCCCGCACTaGTGGGCTTTGTACTTTTTC +
Preference number: 4 (lower is better)
Translates to: QAPSFPSVYQSSREGCCRSSSPH*WALYFF
Trigger: GAAAAAGTACAAAGCCCACCAGTGCGGGGATGATGA...CCGGCAGCAGCCTTCTCTGGAGGACTGATACACAGAAGGAAACGAAGGCGCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR GCA 90 bp TCGTTTCCTTCTGTGTATCAGTCCTCCAGAGAAGGCTGCTGCCGGAACCGCATTTCATCCTCCGTCTTCTaGTTCTTGGCTACTATTCCC +
Preference number: 4 (lower is better)
Translates to: SFPSVYQSSREGCCRNRISSSVF*FLATIP
Trigger: GGGAATAGTAGCCAAGAAGCAGAAGACGGAGGATGA...AATGCGGTTCCGGCAGCAGCCTTCTCTGGAGGACTGATACACAGAAGGAAACGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR CCA 90 bp GGAAGAAAGGGCACAGTAAACCACTGGTCTAAAAGTCTGAGGAGGCAAGTGCTCGGAAGCTGCCATCGTTaGCAAACAAGTTCACACCGC +
Preference number: 4 (lower is better)
Translates to: GRKGTVNHWSKSLRRQVLGSCHR*QTSSHR
Trigger: GCGGTGTGAACTTGTTTGCCAACGATGGCAGCTTCC...GAGCACTTGCCTCCTCAGACTTTTAGACCAGTGGTTTACTGTGCCCTTTCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR GCA 90 bp GTGATGGGAAGAAAGGGCACAGTAAACCACTGGTCTAAAAGTCTGAGGAGGCAAGTACTTTTTCACTTCTaGCATGTACTTGGCCCATGC +
Preference number: 4 (lower is better)
Translates to: VMGRKGTVNHWSKSLRRQVLFHF*HVLGPC
Trigger: GCATGGGCCAAGTACATGGCAGAAGTGAAAAAGTAC...TTGCCTCCTCAGACTTTTAGACCAGTGGTTTACTGTGCCCTTTCTTCCCATCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS GCA 90 bp CGGGTGACGTTCCCGGTCCCGACTCAGCCCATCGGCTCCTGCCGCTaGCCGCCGGGCCGGGCGCCTCCCGACCCGGAGGCTCCGCCCGTC +
Preference number: 5 (lower is better)
Translates to: RVTFPVPTQPIGSCR*PPGRAPPDPEAPPV
Trigger: GACGGGCGGAGCCTCCGGGTCGGGAGGCGCCCGGCCCGGCGGGCAGCGGCAGGAGCCGATGGGCTGAGTCGGGACCGGGAACGTCACCCG
80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS CCA 90 bp GCCCTTCCTCTTCGGATTCCCTGGGCCCGCCGCGGCGGAGGCCGGTaGATCGGGTCGCTGCGGGCCCGGGGGTGGCTCCTCCTGCCGCTG +
Preference number: 5 (lower is better)
Translates to: ALPLRIPWARRGGGR*IGSLRARGWLLLPL
Trigger: CAGCGGCAGGAGGAGCCACCCCCGGGCCCGCAGCGACCCGATCCACCGGCCTCCGCCGCGGCGGGCCCAGGGAATCCGAAGAGGAAGGGC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS TCA 90 bp GGACACCGGACTCGAGCCCGACACCTCGTCGTCCCCACTCTCGGGTaGCGTTCCCGGTCCCGACTCAGCCCATCGGCTCCTGCCGCTGCC +
Preference number: 5 (lower is better)
Translates to: GHRTRARHLVVPTLG*RSRSRLSPSAPAAA
Trigger: GGCAGCGGCAGGAGCCGATGGGCTGAGTCGGGACCGGGAACGTCACCCGAGAGTGGGGACGACGAGGTGTCGGGCTCGAGTCCGGTGTCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR CAA 90 bp GCAAGCGCCTTCGTTTCCTTCTGTGTATCAGTCCTCCAGAGAAGGCTGCTGCCGGTCTTGAGGGCTAGTTaGTTCCCGCCTCTGCGCTTG +
Preference number: 5 (lower is better)
Translates to: ASAFVSFCVSVLQRRLLPVLRAS*FPPLRL
Trigger: CAAGCGCAGAGGCGGGAACAAACTAGCCCTCAAGAC...CGGCAGCAGCCTTCTCTGGAGGACTGATACACAGAAGGAAACGAAGGCGCTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR CAA 90 bp GCAAGCGCCTTCGTTTCCTTCTGTGTATCAGTCCTCCAGAGAAGGCTGCTGCCGACTTCTGCCATGTACTaGGCCCATGCGTCACCTTTA +
Preference number: 5 (lower is better)
Translates to: ASAFVSFCVSVLQRRLLPTSAMY*AHASPL
Trigger: TAAAGGTGACGCATGGGCCAAGTACATGGCAGAAGT...CGGCAGCAGCCTTCTCTGGAGGACTGATACACAGAAGGAAACGAAGGCGCTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS CCA 90 bp CCCCGCACTGGTGGGCTTTGTACTTTTTCACTTCTGCCATGTACTTaGCCCATGCGTCACCTTTACTTGTTAATACCTCATCCTCCGTCT +
Preference number: 5 (lower is better)
Translates to: PRTGGLCTFSLLPCT*PMRHLYLLIPHPPS
Trigger: AGACGGAGGATGAGGTATTAACAAGTAAAGGTGACGCATGGGCCAAGTACATGGCAGAAGTGAAAAAGTACAAAGCCCACCAGTGCGGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR CAA 90 bp CCAGAGAAGGCTGCTGCCGGAACCGCATTAAATATTATGTACATCGCAGAGAGTGCTACTATTCCCGTCTaGAGGGCTAGTTTGTTCCCG +
Preference number: 5 (lower is better)
Translates to: PEKAAAGTALNIMYIAESATIPV*RASLFP
Trigger: CGGGAACAAACTAGCCCTCAAGACGGGAATAGTAGC...ACTCTCTGCGATGTACATAATATTTAATGCGGTTCCGGCAGCAGCCTTCTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR CAA 90 bp AGAGAGAGCAAGGTGATGGGAAGAAAGGGCACAGTAAACCACTGGTCTAAAAGTAGGAAGCTGCCATCGTaGGCAAACAAGTTCACACCG +
Preference number: 5 (lower is better)
Translates to: RESKVMGRKGTVNHWSKSRKLPS*ANKFTP
Trigger: CGGTGTGAACTTGTTTGCCAACGATGGCAGCTTCCT...ACTTTTAGACCAGTGGTTTACTGTGCCCTTTCTTCCCATCACCTTGCTCTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR CAA 90 bp CCAGAGAAGGCTGCTGCCGGAACCGCATTAAATATTATGTACATCGCAGAGAGTTCCGTCTTCTGCTTCTaGGCTACTATTCCCGTCTTG +
Preference number: 5 (lower is better)
Translates to: PEKAAAGTALNIMYIAESSVFCF*ATIPVL
Trigger: CAAGACGGGAATAGTAGCCAAGAAGCAGAAGACGGA...ACTCTCTGCGATGTACATAATATTTAATGCGGTTCCGGCAGCAGCCTTCTCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR CAA 90 bp AGAGAGAGCAAGGTGATGGGAAGAAAGGGCACAGTAAACCACTGGTCTAAAAGTCCGCACTGGTGGGCTTaGTACTTTTTCACTTCTGCC +
Preference number: 5 (lower is better)
Translates to: RESKVMGRKGTVNHWSKSPHWWA*YFFTSA
Trigger: GGCAGAAGTGAAAAAGTACAAAGCCCACCAGTGCGG...ACTTTTAGACCAGTGGTTTACTGTGCCCTTTCTTCCCATCACCTTGCTCTCTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS-3UTR CAA 90 bp TGCCGGAACCGCATTAAATATTATGTACATCGCAGAGAGTCCCAGGTAGTGAGCATGCGTCACCTTTACTaGTTAATACCTCATCCTCCG +
Preference number: 5 (lower is better)
Translates to: CRNRIKYYVHRRESQVVSMRHLY*LIPHPP
Trigger: CGGAGGATGAGGTATTAACAAGTAAAGGTGACGCAT...GCTCACTACCTGGGACTCTCTGCGATGTACATAATATTTAATGCGGTTCCGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS GCA 72 bp TTCCCGGTCCCGACTCAGCCCATCGGCTCCTGCCGCTaGCCGCCGGGCCGGGCGCCTCCCGACCCGGAGGCT +
Preference number: 6 (lower is better)
Translates to: FPVPTQPIGSCR*PPGRAPPDPEA
Trigger: AGCCTCCGGGTCGGGAGGCGCCCGGCCCGGCGGGCAGCGGCAGGAGCCGATGGGCTGAGTCGGGACCGGGAA
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS CCA 72 bp GCCTCTGCGCTTGCCCACGAAGCTGAGCGTGGGGCCTaGGCCGCCCTTCCTCTTCGGATTCCCTGGGCCCGC +
Preference number: 6 (lower is better)
Translates to: ASALAHEAERGA*AALPLRIPWAR
Trigger: GCGGGCCCAGGGAATCCGAAGAGGAAGGGCGGCCCAGGCCCCACGCTCAGCTTCGTGGGCAAGCGCAGAGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS CAA 72 bp CCCGTCTTGAGGGCTAGTTTGTTCCCGCCTCTGCGCTaGCCCACGAAGCTGAGCGTGGGGCCTGGGCCGCCC +
Preference number: 6 (lower is better)
Translates to: PVLRASLFPPLR*PTKLSVGPGPP
Trigger: GGGCGGCCCAGGCCCCACGCTCAGCTTCGTGGGCAAGCGCAGAGGCGGGAACAAACTAGCCCTCAAGACGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS TCA 72 bp ACTCGAGCCCGACACCTCGTCGTCCCCACTCTCGGGTaGCGTTCCCGGTCCCGACTCAGCCCATCGGCTCCT +
Preference number: 6 (lower is better)
Translates to: TRARHLVVPTLG*RSRSRLSPSAP
Trigger: AGGAGCCGATGGGCTGAGTCGGGACCGGGAACGTCACCCGAGAGTGGGGACGACGAGGTGTCGGGCTCGAGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS CCA 72 bp GGAAGCTGCCATCGTTGGCAAACAAGTTCACACCGCTaGACACCGGACTCGAGCCCGACACCTCGTCGTCCC +
Preference number: 6 (lower is better)
Translates to: GSCHRWQTSSHR*TPDSSPTPRRP
Trigger: GGGACGACGAGGTGTCGGGCTCGAGTCCGGTGTCCAGCGGTGTGAACTTGTTTGCCAACGATGGCAGCTTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS CAA 90 bp TCCGTCTTCTGCTTCTTGGCTACTATTCCCGTCTTGAGGGCTAGTTaGTTCCCGCCTCTGCGCTTGCCCACGAAGCTGAGCGTGGGGCCT +
Preference number: 6 (lower is better)
Translates to: SVFCFLATIPVLRAS*FPPLRLPTKLSVGP
Trigger: AGGCCCCACGCTCAGCTTCGTGGGCAAGCGCAGAGGCGGGAACAAACTAGCCCTCAAGACGGGAATAGTAGCCAAGAAGCAGAAGACGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS TCA 72 bp CCTCCGTCTTCTGCTTCTTGGCTACTATTCCCGTCTTaGGGGCTAGTTTGTTCCCGCCTCTGCGCTTGCCCA +
Preference number: 6 (lower is better)
Translates to: PPSSASWLLFPS*GLVCSRLCACP
Trigger: TGGGCAAGCGCAGAGGCGGGAACAAACTAGCCCTCAAGACGGGAATAGTAGCCAAGAAGCAGAAGACGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS CAA 72 bp TGCTTCTTGGCTACTATTCCCGTCTTGAGGGCTAGTTaGTTCCCGCCTCTGCGCTTGCCCACGAAGCTGAGC +
Preference number: 6 (lower is better)
Translates to: CFLATIPVLRAS*FPPLRLPTKLS
Trigger: GCTCAGCTTCGTGGGCAAGCGCAGAGGCGGGAACAAACTAGCCCTCAAGACGGGAATAGTAGCCAAGAAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS CAA 72 bp TCCTCCGTCTTCTGCTTCTTGGCTACTATTCCCGTCTaGAGGGCTAGTTTGTTCCCGCCTCTGCGCTTGCCC +
Preference number: 6 (lower is better)
Translates to: SSVFCFLATIPV*RASLFPPLRLP
Trigger: GGGCAAGCGCAGAGGCGGGAACAAACTAGCCCTCAAGACGGGAATAGTAGCCAAGAAGCAGAAGACGGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS CAA 90 bp AATACCTCATCCTCCGTCTTCTGCTTCTTGGCTACTATTCCCGTCTaGAGGGCTAGTTTGTTCCCGCCTCTGCGCTTGCCCACGAAGCTG +
Preference number: 6 (lower is better)
Translates to: NTSSSVFCFLATIPV*RASLFPPLRLPTKL
Trigger: CAGCTTCGTGGGCAAGCGCAGAGGCGGGAACAAACTAGCCCTCAAGACGGGAATAGTAGCCAAGAAGCAGAAGACGGAGGATGAGGTATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS CAA 90 bp TCCCCGCACTGGTGGGCTTTGTACTTTTTCACTTCTGCCATGTACTaGGCCCATGCGTCACCTTTACTTGTTAATACCTCATCCTCCGTC +
Preference number: 6 (lower is better)
Translates to: SPHWWALYFFTSAMY*AHASPLLVNTSSSV
Trigger: GACGGAGGATGAGGTATTAACAAGTAAAGGTGACGCATGGGCCAAGTACATGGCAGAAGTGAAAAAGTACAAAGCCCACCAGTGCGGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS GCA 72 bp ATCCCCGCACTGGTGGGCTTTGTACTTTTTCACTTCTaGCATGTACTTGGCCCATGCGTCACCTTTACTTGT +
Preference number: 6 (lower is better)
Translates to: IPALVGFVLFHF*HVLGPCVTFTC
Trigger: ACAAGTAAAGGTGACGCATGGGCCAAGTACATGGCAGAAGTGAAAAAGTACAAAGCCCACCAGTGCGGGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS GCA 72 bp TCACCTTTACTTGTTAATACCTCATCCTCCGTCTTCTaGTTCTTGGCTACTATTCCCGTCTTGAGGGCTAGT +
Preference number: 6 (lower is better)
Translates to: SPLLVNTSSSVF*FLATIPVLRAS
Trigger: ACTAGCCCTCAAGACGGGAATAGTAGCCAAGAAGCAGAAGACGGAGGATGAGGTATTAACAAGTAAAGGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS CCA 72 bp GGTGGGCTTTGTACTTTTTCACTTCTGCCATGTACTTaGCCCATGCGTCACCTTTACTTGTTAATACCTCAT +
Preference number: 6 (lower is better)
Translates to: GGLCTFSLLPCT*PMRHLYLLIPH
Trigger: ATGAGGTATTAACAAGTAAAGGTGACGCATGGGCCAAGTACATGGCAGAAGTGAAAAAGTACAAAGCCCACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS CAA 72 bp TTACTTGTTAATACCTCATCCTCCGTCTTCTGCTTCTaGGCTACTATTCCCGTCTTGAGGGCTAGTTTGTTC +
Preference number: 6 (lower is better)
Translates to: LLVNTSSSVFCF*ATIPVLRASLF
Trigger: GAACAAACTAGCCCTCAAGACGGGAATAGTAGCCAAGAAGCAGAAGACGGAGGATGAGGTATTAACAAGTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10
CDS CAA 72 bp TGGTGGGCTTTGTACTTTTTCACTTCTGCCATGTACTaGGCCCATGCGTCACCTTTACTTGTTAATACCTCA +
Preference number: 6 (lower is better)
Translates to: WWALYFFTSAMY*AHASPLLVNTS
Trigger: TGAGGTATTAACAAGTAAAGGTGACGCATGGGCCAAGTACATGGCAGAAGTGAAAAAGTACAAAGCCCACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047281.10