Pregenerated sensors for TRIQK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055963Ensembl transcript IDs: ENSMUST00000143186.8, ENSMUST00000183345.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCCAGGAGACGAGGAACTCCACTTTAGGGACATATGTGACTCTTTaGGCTTCTGTCATCCAGGTGCCATTTCTGACGCAGCACATGTGC | + |
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Preference number: 1 (lower is better) Translates to: AQETRNSTLGTYVTL*ASVIQVPFLTQHMC Trigger: GCACATGTGCTGCGTCAGAAATGGCACCTGGATGACAGAAGCTCAAAGAGTCACATATGTCCCTAAAGTGGAGTTCCTCGTCTCCTGGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CCA 90 bp | CTTGGCTATTCCCTTGCCTCCCACATCGCGAACAGACATACCACATaGCAGAAAATGCTGCAACCTTTCCTAAAAATGCCACTTGGATGG | + |
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Preference number: 1 (lower is better) Translates to: LGYSLASHIANRHTT*QKMLQPFLKMPLGW Trigger: CCATCCAAGTGGCATTTTTAGGAAAGGTTGCAGCATTTTCTGCCATGTGGTATGTCTGTTCGCGATGTGGGAGGCAAGGGAATAGCCAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CCA 90 bp | GTCATCCAGGTGCCATTTCTGACGCAGCACATGTGCACTAACAGTTaGCAAGGAAGAAAAAGATTACTGTGCCTGTATGTGCAGATAGTC | + |
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Preference number: 1 (lower is better) Translates to: VIQVPFLTQHMCTNS*QGRKRLLCLYVQIV Trigger: GACTATCTGCACATACAGGCACAGTAATCTTTTTCTTCCTTGCCAACTGTTAGTGCACATGTGCTGCGTCAGAAATGGCACCTGGATGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CCA 90 bp | ACATGGCAGAAAATGCTGCAACCTTTCCTAAAAATGCCACTTGGATaGGTCCTCTGTGGTGAGTATGCAAGAGCTCTTGTTCCCTCTCTT | + |
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Preference number: 1 (lower is better) Translates to: TWQKMLQPFLKMPLG*VLCGEYARALVPSL Trigger: AAGAGAGGGAACAAGAGCTCTTGCATACTCACCACAGAGGACCCATCCAAGTGGCATTTTTAGGAAAGGTTGCAGCATTTTCTGCCATGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CCA 90 bp | CAGGACTGCCACTTGTCAAACATTTCCAGGAGACACACAACCATTTaGAACACTGAAAACTGCAGAACTATCTATCTCACCTGGATAGGT | + |
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Preference number: 1 (lower is better) Translates to: QDCHLSNISRRHTTI*NTENCRTIYLTWIG Trigger: ACCTATCCAGGTGAGATAGATAGTTCTGCAGTTTTCAGTGTTCCAAATGGTTGTGTGTCTCCTGGAAATGTTTGACAAGTGGCAGTCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR TCA 90 bp | CGCATTTATGACAAATGCTACCCACTAATCAAAAATGTGGTCCCCTaGAACAGCATGGAGTTAATATCTTTCTGCCTCGAAGTAGACTTT | + |
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Preference number: 1 (lower is better) Translates to: RIYDKCYPLIKNVVP*NSMELISFCLEVDF Trigger: AAAGTCTACTTCGAGGCAGAAAGATATTAACTCCATGCTGTTTCAGGGGACCACATTTTTGATTAGTGGGTAGCATTTGTCATAAATGCG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CCA 90 bp | ACAACCATTTGGAACACTGAAAACTGCAGAACTATCTATCTCACCTaGATAGGTCCTGATAAGCAATTATCACATGTCCTCTCATTTCAG | + |
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Preference number: 1 (lower is better) Translates to: TTIWNTENCRTIYLT*IGPDKQLSHVLSFQ Trigger: CTGAAATGAGAGGACATGTGATAATTGCTTATCAGGACCTATCCAGGTGAGATAGATAGTTCTGCAGTTTTCAGTGTTCCAAATGGTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CCA 90 bp | CAGCATGGAGTTAATATCTTTCTGCCTCGAAGTAGACTTTCAGTATaGTATTTCTGTTTAGTAGATTGGCTGCTTCCAGTTAATGTGAGT | + |
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Preference number: 1 (lower is better) Translates to: QHGVNIFLPRSRLSV*YFCLVDWLLPVNVS Trigger: ACTCACATTAACTGGAAGCAGCCAATCTACTAAACAGAAATACCATACTGAAAGTCTACTTCGAGGCAGAAAGATATTAACTCCATGCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR TCA 90 bp | ACTCTGGCTAAATTTTGCCCTCAGATGTTTGGCATAAATAATATGTaGGGATATTGGAACCTTTGGCTGTTTCACACTGATGAAATAAAT | + |
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Preference number: 1 (lower is better) Translates to: TLAKFCPQMFGINNM*GYWNLWLFHTDEIN Trigger: ATTTATTTCATCAGTGTGAAACAGCCAAAGGTTCCAATATCCTCACATATTATTTATGCCAAACATCTGAGGGCAAAATTTAGCCAGAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CAA 90 bp | AGCCCAGGAGACGAGGAACTCCACTTTAGGGACATATGTGACTCTTaGAGCTTCTGTCATCCAGGTGCCATTTCTGACGCAGCACATGTG | + |
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Preference number: 2 (lower is better) Translates to: SPGDEELHFRDICDS*SFCHPGAISDAAHV Trigger: CACATGTGCTGCGTCAGAAATGGCACCTGGATGACAGAAGCTCAAAGAGTCACATATGTCCCTAAAGTGGAGTTCCTCGTCTCCTGGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR-3UTR TCA 90 bp | CACATCGCGAACAGACATACCACATGGCAGAAAATGCTGCAACCTTTCCTAAAATCCAGGTGCCATTTCTaGCGCAGCACATGTGCACTA | + |
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Preference number: 2 (lower is better) Translates to: HIANRHTTWQKMLQPFLKSRCHF*RSTCAL Trigger: TAGTGCACATGTGCTGCGTCAGAAATGGCACCTGGA...TTTTAGGAAAGGTTGCAGCATTTTCTGCCATGTGGTATGTCTGTTCGCGATGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR-3UTR TCA 90 bp | AAGGCCCATCAAATCCAAAATGCCAGCTTGGCTATTCCCTTGCCTCCCACATCGTATTTAACTGTACCATaGATAGGATATCTGCCAGGA | + |
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Preference number: 2 (lower is better) Translates to: KAHQIQNASLAIPLPPTSYLTVP*IGYLPG Trigger: TCCTGGCAGATATCCTATTCATGGTACAGTTAAATA...CGATGTGGGAGGCAAGGGAATAGCCAAGCTGGCATTTTGGATTTGATGGGCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR-3UTR GCA 90 bp | ACTTGTCAAACATTTCCAGGAGACACACAACCATTTGGAACACTGAAAACTGCAGGCAGATTGTTACACTaGTCCCTAACAAGAGGGCAA | + |
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Preference number: 2 (lower is better) Translates to: TCQTFPGDTQPFGTLKTAGRLLH*SLTRGQ Trigger: TTGCCCTCTTGTTAGGGAGCAGTGTAACAATCTGCC...TGCAGTTTTCAGTGTTCCAAATGGTTGTGTGTCTCCTGGAAATGTTTGACAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR-3UTR GCA 90 bp | TCAAAAGGAAGAATCCAGCAAATAACTCTGGCTAAATTTTGCCCTCAGATGTTTCTGACGCAGCACATGTaGACTAACAGTTGGCAAGGA | + |
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Preference number: 2 (lower is better) Translates to: SKGRIQQITLAKFCPQMFLTQHM*TNSWQG Trigger: TCCTTGCCAACTGTTAGTGCACATGTGCTGCGTCAG...AAACATCTGAGGGCAAAATTTAGCCAGAGTTATTTGCTGGATTCTTCCTTTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CAA 90 bp | AATTGCTCACGTAAATGTGATGAGACTGGAAGAAAGCAGCATTTCTaGACATGTGGCATGTCACTCAGGAAAGTAAAAGGCCCATCAAAT | + |
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Preference number: 2 (lower is better) Translates to: NCSRKCDETGRKQHF*TCGMSLRKVKGPSN Trigger: ATTTGATGGGCCTTTTACTTTCCTGAGTGACATGCCACATGTCAAGAAATGCTGCTTTCTTCCAGTCTCATCACATTTACGTGAGCAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CAA 90 bp | AATGACAGAAATAAACATCACCATATTCTCAGGGTCTCCCTGTCATaGAGTGGGGTTAGAAGTGCCATTAGTCTTTATAGAGAAGTTGAA | + |
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Preference number: 2 (lower is better) Translates to: NDRNKHHHILRVSLS*SGVRSAISLYREVE Trigger: TTCAACTTCTCTATAAAGACTAATGGCACTTCTAACCCCACTCAATGACAGGGAGACCCTGAGAATATGGTGATGTTTATTTCTGTCATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR-3UTR GCA 90 bp | ATTACTGTGCCTGTATGTGCAGATAGTCTCCCTAATGACATGAAATATGTCTGGGCACAAAGATATTTCTaGAAACTGACAGTAGCAAGA | + |
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Preference number: 2 (lower is better) Translates to: ITVPVCADSLPNDMKYVWAQRYF*KLTVAR Trigger: TCTTGCTACTGTCAGTTTGCAGAAATATCTTTGTGC...CCAGACATATTTCATGTCATTAGGGAGACTATCTGCACATACAGGCACAGTAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR-3UTR CCA 90 bp | ACTAACAGTTGGCAAGGAAGAAAAAGATTACTGTGCCTGTATGTGCAGATAGTCATGATCCTAGATTGCTaGGTAAGGTCTTCTTTTGAT | + |
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Preference number: 2 (lower is better) Translates to: TNSWQGRKRLLCLYVQIVMILDC*VRSSFD Trigger: ATCAAAAGAAGACCTTACCCAGCAATCTAGGATCAT...GACTATCTGCACATACAGGCACAGTAATCTTTTTCTTCCTTGCCAACTGTTAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR-3UTR GCA 90 bp | ACTTGTCAAACATTTCCAGGAGACACACAACCATTTGGAACACTGAAAACTGCAAATAGGCATTTTCTATaGATCTCTATATCAGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: TCQTFPGDTQPFGTLKTANRHFL*ISISER Trigger: CCTCTCTGATATAGAGATGCATAGAAAATGCCTATT...TGCAGTTTTCAGTGTTCCAAATGGTTGTGTGTCTCCTGGAAATGTTTGACAAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR-3UTR CCA 90 bp | ACTATCTATCTCACCTGGATAGGTCCTGATAAGCAATTATCACATGTCCTCTCAATGTGCACTAACAGTTaGCAAGGAAGAAAAAGATTA | + |
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Preference number: 2 (lower is better) Translates to: TIYLTWIGPDKQLSHVLSMCTNS*QGRKRL Trigger: TAATCTTTTTCTTCCTTGCCAACTGTTAGTGCACAT...TGAGAGGACATGTGATAATTGCTTATCAGGACCTATCCAGGTGAGATAGATAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CAA 90 bp | CTTTACTATTTCTATTTGCTGAAATCAAAGCTTTTAGCCTGGGATTaGTTCTCTGGGAATGTCATAAATCAACCAGCTAGACAAACAGAC | + |
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Preference number: 2 (lower is better) Translates to: LYYFYLLKSKLLAWD*FSGNVINQPARQTD Trigger: GTCTGTTTGTCTAGCTGGTTGATTTATGACATTCCCAGAGAACAAATCCCAGGCTAAAAGCTTTGATTTCAGCAAATAGAAATAGTAAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CAA 90 bp | TGTCCTCTCATTTCAGTTACGACAGAAAACCAGAAATATTCTTCATaGGATGTGACTGTTTTAACACCATATGGGAGGGAAATAACTAAA | + |
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Preference number: 2 (lower is better) Translates to: CPLISVTTENQKYSS*DVTVLTPYGREITK Trigger: TTTAGTTATTTCCCTCCCATATGGTGTTAAAACAGTCACATCCAATGAAGAATATTTCTGGTTTTCTGTCGTAACTGAAATGAGAGGACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR-3UTR GCA 90 bp | AATAGGATATCTGCCAGGACAGAGAGATTTATAAAGTATCAAGTAGCATACATGGCACAAAGATATTTCTaGAAACTGACAGTAGCAAGA | + |
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Preference number: 2 (lower is better) Translates to: NRISARTERFIKYQVAYMAQRYF*KLTVAR Trigger: TCTTGCTACTGTCAGTTTGCAGAAATATCTTTGTGC...CATGTATGCTACTTGATACTTTATAAATCTCTCTGTCCTGGCAGATATCCTATT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000143186.8 ENSMUST00000183345.2 |
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| 3UTR GCA 72 bp | TCACTCAGGAAAGTAAAAGGCCCATCAAATCCAAAATaGCAGCTTGGCTATTCCCTTGCCTCCCACATCGCG | + |
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Preference number: 3 (lower is better) Translates to: SLRKVKGPSNPK*QLGYSLASHIA Trigger: CGCGATGTGGGAGGCAAGGGAATAGCCAAGCTGGCATTTTGGATTTGATGGGCCTTTTACTTTCCTGAGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR TCA 72 bp | ACGAGGAACTCCACTTTAGGGACATATGTGACTCTTTaGGCTTCTGTCATCCAGGTGCCATTTCTGACGCAG | + |
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Preference number: 3 (lower is better) Translates to: TRNSTLGTYVTL*ASVIQVPFLTQ Trigger: CTGCGTCAGAAATGGCACCTGGATGACAGAAGCTCAAAGAGTCACATATGTCCCTAAAGTGGAGTTCCTCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CCA 72 bp | TCCCTTGCCTCCCACATCGCGAACAGACATACCACATaGCAGAAAATGCTGCAACCTTTCCTAAAAATGCCA | + |
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Preference number: 3 (lower is better) Translates to: SLASHIANRHTT*QKMLQPFLKMP Trigger: TGGCATTTTTAGGAAAGGTTGCAGCATTTTCTGCCATGTGGTATGTCTGTTCGCGATGTGGGAGGCAAGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CCA 72 bp | GAAAGTAAAAGGCCCATCAAATCCAAAATGCCAGCTTaGCTATTCCCTTGCCTCCCACATCGCGAACAGACA | + |
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Preference number: 3 (lower is better) Translates to: ESKRPIKSKMPA*LFPCLPHREQT Trigger: TGTCTGTTCGCGATGTGGGAGGCAAGGGAATAGCCAAGCTGGCATTTTGGATTTGATGGGCCTTTTACTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR TCA 72 bp | CATAGAAACAACGGTTTCACCCCAGAGCACATCTCATaGGTAAAACAGGATAGTGGAGCTTCTCTCAGGACT | + |
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Preference number: 3 (lower is better) Translates to: HRNNGFTPEHIS*VKQDSGASLRT Trigger: AGTCCTGAGAGAAGCTCCACTATCCTGTTTTACTCATGAGATGTGCTCTGGGGTGAAACCGTTGTTTCTATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR GCA 72 bp | AAAAACCCTGCACAATTAAATGGCAGATTGTTACACTaGTCCCTAACAAGAGGGCAAACTGATACTGCAGGC | + |
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Preference number: 3 (lower is better) Translates to: KNPAQLNGRLLH*SLTRGQTDTAG Trigger: GCCTGCAGTATCAGTTTGCCCTCTTGTTAGGGAGCAGTGTAACAATCTGCCATTTAATTGTGCAGGGTTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR GCA 72 bp | TCCAGGAGACACACAACCATTTGGAACACTGAAAACTaGAGAACTATCTATCTCACCTGGATAGGTCCTGAT | + |
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Preference number: 3 (lower is better) Translates to: SRRHTTIWNTEN*RTIYLTWIGPD Trigger: ATCAGGACCTATCCAGGTGAGATAGATAGTTCTGCAGTTTTCAGTGTTCCAAATGGTTGTGTGTCTCCTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CCA 72 bp | AAAATGCTGCAACCTTTCCTAAAAATGCCACTTGGATaGGTCCTCTGTGGTGAGTATGCAAGAGCTCTTGTT | + |
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Preference number: 3 (lower is better) Translates to: KMLQPFLKMPLG*VLCGEYARALV Trigger: AACAAGAGCTCTTGCATACTCACCACAGAGGACCCATCCAAGTGGCATTTTTAGGAAAGGTTGCAGCATTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR-3UTR CAA 90 bp | ACTTGTCAAACATTTCCAGGAGACACACAACCATTTGGAACACTGAAAACTGCAAGTATGCAAGAGCTCTaGTTCCCTCTCTTGAGTCTG | + |
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Preference number: 3 (lower is better) Translates to: TCQTFPGDTQPFGTLKTASMQEL*FPLLSL Trigger: CAGACTCAAGAGAGGGAACAAGAGCTCTTGCATACT...TGCAGTTTTCAGTGTTCCAAATGGTTGTGTGTCTCCTGGAAATGTTTGACAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR TCA 72 bp | ATAAACATCACCATATTCTCAGGGTCTCCCTGTCATTaGGTGGGGTTAGAAGTGCCATTAGTCTTTATAGAG | + |
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Preference number: 3 (lower is better) Translates to: INITIFSGSPCH*VGLEVPLVFIE Trigger: CTCTATAAAGACTAATGGCACTTCTAACCCCACTCAATGACAGGGAGACCCTGAGAATATGGTGATGTTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CCA 72 bp | TGGAACACTGAAAACTGCAGAACTATCTATCTCACCTaGATAGGTCCTGATAAGCAATTATCACATGTCCTC | + |
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Preference number: 3 (lower is better) Translates to: WNTENCRTIYLT*IGPDKQLSHVL Trigger: GAGGACATGTGATAATTGCTTATCAGGACCTATCCAGGTGAGATAGATAGTTCTGCAGTTTTCAGTGTTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CCA 72 bp | CACTTGTCAAACATTTCCAGGAGACACACAACCATTTaGAACACTGAAAACTGCAGAACTATCTATCTCACC | + |
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Preference number: 3 (lower is better) Translates to: HLSNISRRHTTI*NTENCRTIYLT Trigger: GGTGAGATAGATAGTTCTGCAGTTTTCAGTGTTCCAAATGGTTGTGTGTCTCCTGGAAATGTTTGACAAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR-3UTR CAA 90 bp | ACTAACAGTTGGCAAGGAAGAAAAAGATTACTGTGCCTGTATGTGCAGATAGTCATACATGATCCTAGATaGCTGGGTAAGGTCTTCTTT | + |
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Preference number: 3 (lower is better) Translates to: TNSWQGRKRLLCLYVQIVIHDPR*LGKVFF Trigger: AAAGAAGACCTTACCCAGCAATCTAGGATCATGTAT...GACTATCTGCACATACAGGCACAGTAATCTTTTTCTTCCTTGCCAACTGTTAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR TCA 72 bp | CTGTGCCTGTATGTGCAGATAGTCTCCCTAATGACATaGAATATGTCTGGAAAGAAAGCACACTTCCTTTTA | + |
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Preference number: 3 (lower is better) Translates to: LCLYVQIVSLMT*NMSGKKAHFLL Trigger: TAAAAGGAAGTGTGCTTTCTTTCCAGACATATTTCATGTCATTAGGGAGACTATCTGCACATACAGGCACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CCA 72 bp | GTCATTCACAACTCTTTACAACTCTGTGCCCTTAGTTaGAAATTTATACCACAATGCACGTTAGCAGATTCC | + |
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Preference number: 3 (lower is better) Translates to: VIHNSLQLCALS*KFIPQCTLADS Trigger: GGAATCTGCTAACGTGCATTGTGGTATAAATTTCCAACTAAGGGCACAGAGTTGTAAAGAGTTGTGAATGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR-3UTR CAA 90 bp | AAATCAAAGCTTTTAGCCTGGGATTTGTTCTCTGGGAATGTCATAAATCAACCACAATTAAATGGCAGATaGTTACACTGCTCCCTAACA | + |
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Preference number: 3 (lower is better) Translates to: KSKLLAWDLFSGNVINQPQLNGR*LHCSLT Trigger: TGTTAGGGAGCAGTGTAACAATCTGCCATTTAATTG...TGGTTGATTTATGACATTCCCAGAGAACAAATCCCAGGCTAAAAGCTTTGATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR-3UTR CAA 90 bp | TCAAAAGGAAGAATCCAGCAAATAACTCTGGCTAAATTTTGCCCTCAGATGTTTAAATTGGTAATGTGTTaGTCCCCAAAGATGCTCTTA | + |
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Preference number: 3 (lower is better) Translates to: SKGRIQQITLAKFCPQMFKLVMC*SPKMLL Trigger: TAAGAGCATCTTTGGGGACAAACACATTACCAATTT...AAACATCTGAGGGCAAAATTTAGCCAGAGTTATTTGCTGGATTCTTCCTTTTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR TCA 72 bp | ATACATGATCCTAGATTGCTGGGTAAGGTCTTCTTTTaGTATTCTATGCCACTAAGCACAAAGATATTTCTG | + |
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Preference number: 3 (lower is better) Translates to: IHDPRLLGKVFF*YSMPLSTKIFL Trigger: CAGAAATATCTTTGTGCTTAGTGGCATAGAATATCAAAAGAAGACCTTACCCAGCAATCTAGGATCATGTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000143186.8 ENSMUST00000183345.2 |
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| 3UTR TCA 72 bp | AAATTTTGCCCTCAGATGTTTGGCATAAATAATATGTaGGGATATTGGAACCTTTGGCTGTTTCACACTGAT | + |
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Preference number: 3 (lower is better) Translates to: KFCPQMFGINNM*GYWNLWLFHTD Trigger: ATCAGTGTGAAACAGCCAAAGGTTCCAATATCCTCACATATTATTTATGCCAAACATCTGAGGGCAAAATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR GCA 72 bp | TTTATAAAGTATCAAGTAGCATACATGATCCTAGATTaGTGGGTAAGGTCTTCTTTTGATATTCTATGCCAC | + |
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Preference number: 3 (lower is better) Translates to: FIKYQVAYMILD*WVRSSFDILCH Trigger: GTGGCATAGAATATCAAAAGAAGACCTTACCCAGCAATCTAGGATCATGTATGCTACTTGATACTTTATAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000143186.8 ENSMUST00000183345.2 |
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| 3UTR CAA 72 bp | GACGAGGAACTCCACTTTAGGGACATATGTGACTCTTaGAGCTTCTGTCATCCAGGTGCCATTTCTGACGCA | + |
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Preference number: 4 (lower is better) Translates to: DEELHFRDICDS*SFCHPGAISDA Trigger: TGCGTCAGAAATGGCACCTGGATGACAGAAGCTCAAAGAGTCACATATGTCCCTAAAGTGGAGTTCCTCGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CAA 72 bp | CGTAAATGTGATGAGACTGGAAGAAAGCAGCATTTCTaGACATGTGGCATGTCACTCAGGAAAGTAAAAGGC | + |
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Preference number: 4 (lower is better) Translates to: RKCDETGRKQHF*TCGMSLRKVKG Trigger: GCCTTTTACTTTCCTGAGTGACATGCCACATGTCAAGAAATGCTGCTTTCTTCCAGTCTCATCACATTTACG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| CDS-3UTR CCA 90 bp | ACTTGTCAAACATTTCCAGGAGACACACAACCATTTGGAACACTGAAAACTGCACAGGAAGTTTTGTATTaGAAGAGTCTTTTCTACCCA | + |
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Preference number: 4 (lower is better) Translates to: TCQTFPGDTQPFGTLKTAQEVLY*KSLFYP Trigger: TGGGTAGAAAAGACTCTTCCAATACAAAACTTCCTG...TGCAGTTTTCAGTGTTCCAAATGGTTGTGTGTCTCCTGGAAATGTTTGACAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| 3UTR CAA 72 bp | TTCTATTTGCTGAAATCAAAGCTTTTAGCCTGGGATTaGTTCTCTGGGAATGTCATAAATCAACCAGCTAGA | + |
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Preference number: 4 (lower is better) Translates to: FYLLKSKLLAWD*FSGNVINQPAR Trigger: TCTAGCTGGTTGATTTATGACATTCCCAGAGAACAAATCCCAGGCTAAAAGCTTTGATTTCAGCAAATAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| CDS-3UTR CCA 90 bp | ATTTATAAAGTATCAAGTAGCATACATGATCCTAGATTGCTGGGTAAGGTCTTCCAGGAAGTTTTGTATTaGAAGAGTCTTTTCTACCCA | + |
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Preference number: 4 (lower is better) Translates to: IYKVSSSIHDPRLLGKVFQEVLY*KSLFYP Trigger: TGGGTAGAAAAGACTCTTCCAATACAAAACTTCCTG...GAAGACCTTACCCAGCAATCTAGGATCATGTATGCTACTTGATACTTTATAAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000143186.8 ENSMUST00000183345.2 |
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| 3UTR CAA 72 bp | ATTTCAGTTACGACAGAAAACCAGAAATATTCTTCATaGGATGTGACTGTTTTAACACCATATGGGAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: ISVTTENQKYSS*DVTVLTPYGRE Trigger: TTCCCTCCCATATGGTGTTAAAACAGTCACATCCAATGAAGAATATTTCTGGTTTTCTGTCGTAACTGAAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| CDS-3UTR CAA 90 bp | ATAGTGGAGCTTCTCTCAGGACTGCCACTTGTCAAACATTTCCAGGAGACACACGATCAACAGGAAGTTTaGTATTGGAAGAGTCTTTTC | + |
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Preference number: 5 (lower is better) Translates to: IVELLSGLPLVKHFQETHDQQEV*YWKSLF Trigger: GAAAAGACTCTTCCAATACAAAACTTCCTGTTGATC...GTGTGTCTCCTGGAAATGTTTGACAAGTGGCAGTCCTGAGAGAAGCTCCACTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183345.2 |
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| CDS-3UTR CAA 90 bp | GAGAGATTTATAAAGTATCAAGTAGCATACATGATCCTAGATTGCTGGGTAAGGACAGGAAGTTTTGTATaGGAAGAGTCTTTTCTACCC | + |
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Preference number: 5 (lower is better) Translates to: ERFIKYQVAYMILDCWVRTGSFV*EESFLP Trigger: GGGTAGAAAAGACTCTTCCAATACAAAACTTCCTGT...CCTTACCCAGCAATCTAGGATCATGTATGCTACTTGATACTTTATAAATCTCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000143186.8 ENSMUST00000183345.2 |
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| CDS-3UTR CAA 90 bp | ACAGAGAGATTTATAAAGTATCAAGTAGCATACATGATCCTAGATTGCTGGGTAACAGGAAGTTTTGTATaGGAAGAGTCTTTTCTACCC | + |
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Preference number: 5 (lower is better) Translates to: TERFIKYQVAYMILDCWVTGSFV*EESFLP Trigger: GGGTAGAAAAGACTCTTCCAATACAAAACTTCCTGT...TACCCAGCAATCTAGGATCATGTATGCTACTTGATACTTTATAAATCTCTCTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000143186.8 ENSMUST00000183345.2 |
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| CDS-3UTR CAA 90 bp | ATTTATAAAGTATCAAGTAGCATACATGATCCTAGATTGCTGGGTAAGGTCTTCGATCAACAGGAAGTTTaGTATTGGAAGAGTCTTTTC | + |
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Preference number: 5 (lower is better) Translates to: IYKVSSSIHDPRLLGKVFDQQEV*YWKSLF Trigger: GAAAAGACTCTTCCAATACAAAACTTCCTGTTGATC...GAAGACCTTACCCAGCAATCTAGGATCATGTATGCTACTTGATACTTTATAAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000143186.8 ENSMUST00000183345.2 |
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| CDS-3UTR CAA 90 bp | ACAGAGAGATTTATAAAGTATCAAGTAGCATACATGATCCTAGATTGCTGGGTAGCTTCTGCTTTTAATTaGGTTGCTCGTAAAATAGGT | + |
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Preference number: 5 (lower is better) Translates to: TERFIKYQVAYMILDCWVASAFN*VARKIG Trigger: ACCTATTTTACGAGCAACCAAATTAAAAGCAGAAGC...TACCCAGCAATCTAGGATCATGTATGCTACTTGATACTTTATAAATCTCTCTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000143186.8 ENSMUST00000183345.2 |
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