Pregenerated sensors for TRIP6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023348Ensembl transcript IDs: ENSMUST00000024119.11, ENSMUST00000199121.2
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGACAGCATTTGATGGCAAACACTAAGGGTAGATGTTGGGGGAAGTaGCGGACGGACGGACGGGGGCTGAGATCCCAGCAGGTACTTCTC | + |
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Preference number: 1 (lower is better) Translates to: RQHLMANTKGRCWGK*RTDGRGLRSQQVLL Trigger: GAGAAGTACCTGCTGGGATCTCAGCCCCCGTCCGTCCGTCCGTCACTTCCCCCAACATCTACCCTTAGTGTTTGCCATCAAATGCTGTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| 3UTR GCA 90 bp | AAACTAGGCTGGGCTCAAACTCACACTCTGCCTCCGCCTCCTGAGTaGTGGAGTTCAAGCTTTCACCAGCCTCATCCTGTGAGACTCCAA | + |
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Preference number: 1 (lower is better) Translates to: KLGWAQTHTLPPPPE*WSSSFHQPHPVRLQ Trigger: TTGGAGTCTCACAGGATGAGGCTGGTGAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGCCCAGCCTAGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| 3UTR CCA 90 bp | TTATGTAGCCCCTCACTGTCCTGGAACTTAGTATGTAAACTAGGCTaGGCTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGT | + |
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Preference number: 1 (lower is better) Translates to: LCSPSLSWNLVCKLG*AQTHTLPPPPECWS Trigger: ACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGCCCAGCCTAGTTTACATACTAAGTTCCAGGACAGTGAGGGGCTACATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| 3UTR-3UTR TCA 90 bp | TGGGCTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTCGGACGGACGGGGGCTaGGATCCCAGCAGGTACTTC | + |
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Preference number: 2 (lower is better) Translates to: WAQTHTLPPPPECWSSSFRTDGG*DPSRYF Trigger: GAAGTACCTGCTGGGATCTCAGCCCCCGTCCGTCCG...AAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGCCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| 3UTR-3UTR TCA 90 bp | TTATGTAGCCCCTCACTGTCCTGGAACTTAGTATGTAAACTAGGCTGGGCTCAAACCAGCCTCATCCTGTaGGACTCCAATAAAGAACAG | + |
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Preference number: 2 (lower is better) Translates to: LCSPSLSWNLVCKLGWAQTSLIL*DSNKEQ Trigger: CTGTTCTTTATTGGAGTCTCACAGGATGAGGCTGGT...TTGAGCCCAGCCTAGTTTACATACTAAGTTCCAGGACAGTGAGGGGCTACATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| 3UTR CCA 72 bp | ATGCTGGGAGCATCGGGGTTGGAACAGCACCTCCACTaGGCTTCAGGGAGCCTCCGCGGTAAGCATGGGGTG | + |
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Preference number: 3 (lower is better) Translates to: MLGASGLEQHLH*ASGSLRGKHGV Trigger: CACCCCATGCTTACCGCGGAGGCTCCCTGAAGCCCAGTGGAGGTGCTGTTCCAACCCCGATGCTCCCAGCAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199121.2 |
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| 3UTR GCA 72 bp | AGCATAGGAGGCTGGGGTAGGTCCACCATAGTGGGATaGTGGGAGCATCGGGGTTGGAACAGCACCTCCACT | + |
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Preference number: 3 (lower is better) Translates to: SIGGWGRSTIVG*WEHRGWNSTST Trigger: AGTGGAGGTGCTGTTCCAACCCCGATGCTCCCAGCATCCCACTATGGTGGACCTACCCCAGCCTCCTATGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199121.2 |
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| 3UTR TCA 72 bp | TTGATGGCAAACACTAAGGGTAGATGTTGGGGGAAGTaGCGGACGGACGGACGGGGGCTGAGATCCCAGCAG | + |
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Preference number: 3 (lower is better) Translates to: LMANTKGRCWGK*RTDGRGLRSQQ Trigger: CTGCTGGGATCTCAGCCCCCGTCCGTCCGTCCGTCACTTCCCCCAACATCTACCCTTAGTGTTTGCCATCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| 3UTR TCA 72 bp | AGGCTGGGCTCAAACTCACACTCTGCCTCCGCCTCCTaGGTGCTGGAGTTCAAGCTTTCACCAGCCTCATCC | + |
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Preference number: 3 (lower is better) Translates to: RLGSNSHSASAS*VLEFKLSPASS Trigger: GGATGAGGCTGGTGAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGCCCAGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| 3UTR GCA 72 bp | TGGGCTCAAACTCACACTCTGCCTCCGCCTCCTGAGTaGTGGAGTTCAAGCTTTCACCAGCCTCATCCTGTG | + |
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Preference number: 3 (lower is better) Translates to: WAQTHTLPPPPE*WSSSFHQPHPV Trigger: CACAGGATGAGGCTGGTGAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGCCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| 3UTR CCA 72 bp | GCTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTaGAGTTCAAGCTTTCACCAGCCTCATCCTGTGAGA | + |
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Preference number: 3 (lower is better) Translates to: AQTHTLPPPPEC*SSSFHQPHPVR Trigger: TCTCACAGGATGAGGCTGGTGAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| 3UTR CCA 72 bp | CCCTCACTGTCCTGGAACTTAGTATGTAAACTAGGCTaGGCTCAAACTCACACTCTGCCTCCGCCTCCTGAG | + |
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Preference number: 3 (lower is better) Translates to: PSLSWNLVCKLG*AQTHTLPPPPE Trigger: CTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGCCCAGCCTAGTTTACATACTAAGTTCCAGGACAGTGAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| 3UTR-3UTR CAA 90 bp | GGGCTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTCAAGAAAAGACAGCATTaGATGGCAAACACTAAGGGT | + |
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Preference number: 3 (lower is better) Translates to: GLKLTLCLRLLSAGVQAFKKRQH*MANTKG Trigger: ACCCTTAGTGTTTGCCATCAAATGCTGTCTTTTCTT...GAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| 3UTR TCA 72 bp | AGTGCTGGAGTTCAAGCTTTCACCAGCCTCATCCTGTaGGACTCCAATAAAGAACAGACTTGGAAGTGCTTT | + |
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Preference number: 3 (lower is better) Translates to: SAGVQAFTSLIL*DSNKEQTWKCF Trigger: AAAGCACTTCCAAGTCTGTTCTTTATTGGAGTCTCACAGGATGAGGCTGGTGAAAGCTTGAACTCCAGCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| 3UTR CCA 72 bp | ATATGCAGGATCTCATTATGTAGCCCCTCACTGTCCTaGAACTTAGTATGTAAACTAGGCTGGGCTCAAACT | + |
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Preference number: 3 (lower is better) Translates to: ICRISLCSPSLS*NLVCKLGWAQT Trigger: AGTTTGAGCCCAGCCTAGTTTACATACTAAGTTCCAGGACAGTGAGGGGCTACATAATGAGATCCTGCATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| 3UTR GCA 72 bp | ACTCCAATAAAGAACAGACTTGGAAGTGCTTTTAAATaGTCCAGGGATTATTATTTCATGAAGAGAGGAAGA | + |
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Preference number: 3 (lower is better) Translates to: TPIKNRLGSAFK*SRDYYFMKRGR Trigger: TCTTCCTCTCTTCATGAAATAATAATCCCTGGAGCATTTAAAAGCACTTCCAAGTCTGTTCTTTATTGGAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | GAACAGCACCTCCACTGGGCTTCAGGGAGCCTCCGCGGTAAGCATGGGGTGGGGTGCTCCGTGGGCCGTTaGCGGGCCCAGGGCGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: EQHLHWASGSLRGKHGVGCSVGR*RAQGAS Trigger: AGAGGCGCCCTGGGCCCGCCAACGGCCCACGGAGCA...CCCCACCCCATGCTTACCGCGGAGGCTCCCTGAAGCCCAGTGGAGGTGCTGTTC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199121.2 |
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| CDS-3UTR CCA 90 bp | GCTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTCACTGCTCCGTGGGCCGTTaGCGGGCCCAGGGCGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: AQTHTLPPPPECWSSSFHCSVGR*RAQGAS Trigger: AGAGGCGCCCTGGGCCCGCCAACGGCCCACGGAGCA...GTGAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | GGGCTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTCGAGAGGCCCCTCGCCTaGGCAGTCCACAGCCTCTCA | + |
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Preference number: 4 (lower is better) Translates to: GLKLTLCLRLLSAGVQAFERPLA*AVHSLS Trigger: TGAGAGGCTGTGGACTGCCCAGGCGAGGGGCCTCTC...GAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR GCA 90 bp | CTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTCACCTCTGGAGGGAGCCCCTaGAGGCGCTGGGGTGTTCCA | + |
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Preference number: 4 (lower is better) Translates to: LKLTLCLRLLSAGVQAFTSGGSP*RRWGVP Trigger: TGGAACACCCCAGCGCCTGCAGGGGCTCCCTCCAGA...GGTGAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | GCTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTCACAGCCCCTGCAGGCGCTaGGGTGTTCCATGGGATCCC | + |
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Preference number: 4 (lower is better) Translates to: AQTHTLPPPPECWSSSFHSPCRR*GVPWDP Trigger: GGGATCCCATGGAACACCCCAGCGCCTGCAGGGGCT...GTGAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | CTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTCACCGATGATCCCCCTGTCTaGAGGGAGCCCCTGCAGGCG | + |
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Preference number: 4 (lower is better) Translates to: LKLTLCLRLLSAGVQAFTDDPPV*REPLQA Trigger: CGCCTGCAGGGGCTCCCTCCAGACAGGGGGATCATC...GGTGAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | GCTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTCACAGGAAAGTGGGGGCCTaGAAGAGGCCCAGAGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: AQTHTLPPPPECWSSSFHRKVGA*KRPRGL Trigger: CAGGCCTCTGGGCCTCTTCCAGGCCCCCACTTTCCT...GTGAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR TCA 90 bp | GCTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTCACGGCCCCACCACACACTaGGCATCGTGGGGCAAATTT | + |
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Preference number: 4 (lower is better) Translates to: AQTHTLPPPPECWSSSFHGPTTH*ASWGKF Trigger: AAATTTGCCCCACGATGCTCAGTGTGTGGTGGGGCC...GTGAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR GCA 90 bp | TGGGCTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTTCCACCATAGTGGGATaGTGGGAGCATCGGGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: WAQTHTLPPPPECWSSSFSTIVG*WEHRGW Trigger: CCAACCCCGATGCTCCCAGCATCCCACTATGGTGGA...AAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | CTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTCACCTCAATGCAGTGGATCTaGCTGGTGGCGTCCACTGTG | + |
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Preference number: 4 (lower is better) Translates to: LKLTLCLRLLSAGVQAFTSMQWI*LVASTV Trigger: CACAGTGGACGCCACCAGCCAGATCCACTGCATTGA...GGTGAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR GCA 90 bp | TGGGCTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTTCCTCTCCCTCCTCCTaGAGGGATATGTACTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: WAQTHTLPPPPECWSSSFSSPSS*RDMYSR Trigger: TCTGGAGTACATATCCCTGCAGGAGGAGGGAGAGGA...AAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | CTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTCACCCAAAGTACTCCCCACTaGGAGGGTGGCTCATGTCAT | + |
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Preference number: 4 (lower is better) Translates to: LKLTLCLRLLSAGVQAFTQSTPH*EGGSCH Trigger: ATGACATGAGCCACCCTCCCAGTGGGGAGTACTTTG...GGTGAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR TCA 90 bp | GTGCTGGAGTTCAAGCTTTCACCAGCCTCATCCTGTGAGACTCCAATAAAGAACCTCACCGTCTCCTCCTaGCCTGGTTCCGGCATGATG | + |
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Preference number: 4 (lower is better) Translates to: VLEFKLSPASSCETPIKNLTVSS*PGSGMM Trigger: CATCATGCCGGAACCAGGTCAGGAGGAGACGGTGAG...GTTCTTTATTGGAGTCTCACAGGATGAGGCTGGTGAAAGCTTGAACTCCAGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | TTATGTAGCCCCTCACTGTCCTGGAACTTAGTATGTAAACTAGGCTGGGCTCAAGAACAGCACCTCCACTaGGCTTCAGGGAGCCTCCGC | + |
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Preference number: 4 (lower is better) Translates to: LCSPSLSWNLVCKLGWAQEQHLH*ASGSLR Trigger: GCGGAGGCTCCCTGAAGCCCAGTGGAGGTGCTGTTC...TTGAGCCCAGCCTAGTTTACATACTAAGTTCCAGGACAGTGAGGGGCTACATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | GCTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTCACAACATTTCTCCAGGGTaGCCACATAGCAGCTCTCAC | + |
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Preference number: 4 (lower is better) Translates to: AQTHTLPPPPECWSSSFHNISPG*PHSSSH Trigger: GTGAGAGCTGCTATGTGGCCACCCTGGAGAAATGTT...GTGAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | AACTTAGTATGTAAACTAGGCTGGGCTCAAACTCACACTCTGCCTCCGCCTCCTGTGAAGCAACCAGGGTaGTACGCCTTCCCCATAGCC | + |
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Preference number: 4 (lower is better) Translates to: NLVCKLGWAQTHTLPPPPVKQPG*YAFPIA Trigger: GGCTATGGGGAAGGCGTACCACCCTGGTTGCTTCAC...AGGAGGCGGAGGCAGAGTGTGAGTTTGAGCCCAGCCTAGTTTACATACTAAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | TGGGCTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTCATGCACCAGTTTCTTaGTCAGTCTCTCCAGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: WAQTHTLPPPPECWSSSFHAPVS*SVSPVP Trigger: AGGAACTGGAGAGACTGACCAAGAAACTGGTGCATG...AAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAGCCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | AGGAAGAAAAGACAGCATTTGATGGCAAACACTAAGGGTAGATGTTGGGGGAAGCGTCTCCTCCTGACCTaGTTCCGGCATGATGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: RKKRQHLMANTKGRCWGKRLLLT*FRHDGP Trigger: GGGGCCATCATGCCGGAACCAGGTCAGGAGGAGACG...CTTCCCCCAACATCTACCCTTAGTGTTTGCCATCAAATGCTGTCTTTTCTTCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | AGGAAGAAAAGACAGCATTTGATGGCAAACACTAAGGGTAGATGTTGGGGGAAGCCTGTCAGAGGAAAGTaGGGGCCTGGAAGAGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: RKKRQHLMANTKGRCWGKPVRGK*GPGRGP Trigger: TGGGCCTCTTCCAGGCCCCCACTTTCCTCTGACAGG...CTTCCCCCAACATCTACCCTTAGTGTTTGCCATCAAATGCTGTCTTTTCTTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | AGGAAGAAAAGACAGCATTTGATGGCAAACACTAAGGGTAGATGTTGGGGGAAGTCCCCACTGGGAGGGTaGCTCATGTCATGCACCAGT | + |
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Preference number: 4 (lower is better) Translates to: RKKRQHLMANTKGRCWGKSPLGG*LMSCTS Trigger: ACTGGTGCATGACATGAGCCACCCTCCCAGTGGGGA...CTTCCCCCAACATCTACCCTTAGTGTTTGCCATCAAATGCTGTCTTTTCTTCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | AGGAAGAAAAGACAGCATTTGATGGCAAACACTAAGGGTAGATGTTGGGGGAAGGTGGCTGAGAGCTCTTaGATACGCCAGGCGCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: RKKRQHLMANTKGRCWGKVAESS*IRQALQ Trigger: TTGCAGCGCCTGGCGTATCCAAGAGCTCTCAGCCAC...CTTCCCCCAACATCTACCCTTAGTGTTTGCCATCAAATGCTGTCTTTTCTTCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR TCA 90 bp | GTGCTGGAGTTCAAGCTTTCACCAGCCTCATCCTGTGAGACTCCAATAAAGAACCAGCCAACATGCTGGTaGGCGAATCTATCTCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: VLEFKLSPASSCETPIKNQPTCW*ANLSQH Trigger: ATGCTGAGATAGATTCGCTCACCAGCATGTTGGCTG...GTTCTTTATTGGAGTCTCACAGGATGAGGCTGGTGAAAGCTTGAACTCCAGCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR TCA 90 bp | AACAGACTTGGAAGTGCTTTTAAATGCTCCAGGGATTATTATTTCATGAAGAGATGGCCTAAGGGGCCCTaGGGCTCATGCCCACCTCCT | + |
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Preference number: 4 (lower is better) Translates to: NRLGSAFKCSRDYYFMKRWPKGP*GSCPPP Trigger: AGGAGGTGGGCATGAGCCTCAGGGCCCCTTAGGCCA...TCTCTTCATGAAATAATAATCCCTGGAGCATTTAAAAGCACTTCCAAGTCTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR TCA 90 bp | CTTGGAAGTGCTTTTAAATGCTCCAGGGATTATTATTTCATGAAGAGAGGAAGAAAGTTGACCCTGGGGTaGGGCTGGAGTGTTGCTCCG | + |
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Preference number: 4 (lower is better) Translates to: LGSAFKCSRDYYFMKRGRKLTLG*GWSVAP Trigger: CGGAGCAACACTCCAGCCTCACCCCAGGGTCAACTT...TCTTCCTCTCTTCATGAAATAATAATCCCTGGAGCATTTAAAAGCACTTCCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR GCA 90 bp | AGACTTGGAAGTGCTTTTAAATGCTCCAGGGATTATTATTTCATGAAGAGAGGAGGATACGCCAGGCGCTaGAAGCCTTGCACAAGATGT | + |
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Preference number: 4 (lower is better) Translates to: RLGSAFKCSRDYYFMKRGGYARR*KPCTRC Trigger: ACATCTTGTGCAAGGCTTGCAGCGCCTGGCGTATCC...TCCTCTCTTCATGAAATAATAATCCCTGGAGCATTTAAAAGCACTTCCAAGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | CTTGGAAGTGCTTTTAAATGCTCCAGGGATTATTATTTCATGAAGAGAGGAAGAACCATAGTGGGATGCTaGGAGCATCGGGGTTGGAAC | + |
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Preference number: 4 (lower is better) Translates to: LGSAFKCSRDYYFMKRGRTIVGC*EHRGWN Trigger: GTTCCAACCCCGATGCTCCCAGCATCCCACTATGGT...TCTTCCTCTCTTCATGAAATAATAATCCCTGGAGCATTTAAAAGCACTTCCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR TCA 90 bp | AACAGACTTGGAAGTGCTTTTAAATGCTCCAGGGATTATTATTTCATGAAGAGACAGCCTCTCACAGGTTaGGCCACCTTCACTTGTACA | + |
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Preference number: 4 (lower is better) Translates to: NRLGSAFKCSRDYYFMKRQPLTG*ATFTCT Trigger: TGTACAAGTGAAGGTGGCTCAACCTGTGAGAGGCTG...TCTCTTCATGAAATAATAATCCCTGGAGCATTTAAAAGCACTTCCAAGTCTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CCA 90 bp | AGACTTGGAAGTGCTTTTAAATGCTCCAGGGATTATTATTTCATGAAGAGAGGATGGGTTCAGAGCATGTaGAACATTTCTCCAGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: RLGSAFKCSRDYYFMKRGWVQSM*NISPGW Trigger: CCACCCTGGAGAAATGTTCCACATGCTCTGAACCCA...TCCTCTCTTCATGAAATAATAATCCCTGGAGCATTTAAAAGCACTTCCAAGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR GCA 90 bp | CTTGGAAGTGCTTTTAAATGCTCCAGGGATTATTATTTCATGAAGAGAGGAAGATGTGGAAATCTTCAATaGAGTGGATCTGGCTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: LGSAFKCSRDYYFMKRGRCGNLQ*SGSGWW Trigger: CCACCAGCCAGATCCACTGCATTGAAGATTTCCACA...TCTTCCTCTCTTCATGAAATAATAATCCCTGGAGCATTTAAAAGCACTTCCAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CCA 90 bp | GCGGGCCCAGGGCGCCTCTGGGCAGCGATCTCCCCTGAGGGAGTCTaGAGGGTTCTGGCTGCTTCGGGGGAAGCCAGGTGGGCCCGGACA | + |
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Preference number: 5 (lower is better) Translates to: AGPGRLWAAISPEGV*RVLAASGEARWART Trigger: TGTCCGGGCCCACCTGGCTTCCCCCGAAGCAGCCAGAACCCTCCAGACTCCCTCAGGGGAGATCGCTGCCCAGAGGCGCCCTGGGCCCGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024119.11 ENSMUST00000199121.2 |
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| CDS CCA 90 bp | AGTGGGGGCCTGGAAGAGGCCCAGAGGCCTGAGAGGCCCCTCGCCTaGGCAGTCCACAGCCTCTCACAGGTTGAGCCACCTTCACTTGTA | + |
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Preference number: 5 (lower is better) Translates to: SGGLEEAQRPERPLA*AVHSLSQVEPPSLV Trigger: TACAAGTGAAGGTGGCTCAACCTGTGAGAGGCTGTGGACTGCCCAGGCGAGGGGCCTCTCAGGCCTCTGGGCCTCTTCCAGGCCCCCACT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CCA 90 bp | CCCCGGAGCTGGGCCCGACAGGTAGAACACACAAAGCAACCAATATaGAAGACACGGTCCAGGGCCACAACCCCAGCTCCATCGCCCACC | + |
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Preference number: 5 (lower is better) Translates to: PRSWARQVEHTKQPI*KTRSRATTPAPSPT Trigger: GGTGGGCGATGGAGCTGGGGTTGTGGCCCTGGACCGTGTCTTCCATATTGGTTGCTTTGTGTGTTCTACCTGTCGGGCCCAGCTCCGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS TCA 90 bp | GTCAGTCTCTCCAGTTCCTCTTCAGGAGGTTGGCCTAAGGGGCCCTaGGGCTCATGCCCACCTCCTCTCCCTCCTCCTGCAGGGATATGT | + |
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Preference number: 5 (lower is better) Translates to: VSLSSSSSGGWPKGP*GSCPPPLPPPAGIC Trigger: ACATATCCCTGCAGGAGGAGGGAGAGGAGGTGGGCATGAGCCTCAGGGCCCCTTAGGCCAACCTCCTGAAGAGGAACTGGAGAGACTGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CCA 90 bp | CACAGGTTGAGCCACCTTCACTTGTACAGGGAAAGCAGGGCCAGCTaGCGTGCTCGCGGTAGCATAGGAGGCTGGGGTAGGTCCACCATA | + |
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Preference number: 5 (lower is better) Translates to: HRLSHLHLYRESRAS*RARGSIGGWGRSTI Trigger: TATGGTGGACCTACCCCAGCCTCCTATGCTACCGCGAGCACGCCAGCTGGCCCTGCTTTCCCTGTACAAGTGAAGGTGGCTCAACCTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS GCA 90 bp | TGTGGAACATTTCTCCAGGGTGGCCACATAGCAGCTCTCACAATATaGCCGCCTCTCCACAGCATAGAAGTGCTGGCCCCGGAGCTGGGC | + |
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Preference number: 5 (lower is better) Translates to: CGTFLQGGHIAALTI*PPLHSIEVLAPELG Trigger: GCCCAGCTCCGGGGCCAGCACTTCTATGCTGTGGAGAGGCGGGCATATTGTGAGAGCTGCTATGTGGCCACCCTGGAGAAATGTTCCACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CCA 90 bp | TCGCCACAGCCACCACACCGACCAAAGTACTCCCCACTGGGAGGGTaGCTCATGTCATGCACCAGTTTCTTGGTCAGTCTCTCCAGTTCC | + |
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Preference number: 5 (lower is better) Translates to: SPQPPHRPKYSPLGG*LMSCTSFLVSLSSS Trigger: GGAACTGGAGAGACTGACCAAGAAACTGGTGCATGACATGAGCCACCCTCCCAGTGGGGAGTACTTTGGTCGGTGTGGTGGCTGTGGCGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CAA 90 bp | CTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTCACCCAGGCGCTGCAAGCCTaGCACAAGATGTGCCCATCC | + |
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Preference number: 5 (lower is better) Translates to: LKLTLCLRLLSAGVQAFTQALQA*HKMCPS Trigger: GGATGGGCACATCTTGTGCAAGGCTTGCAGCGCCTG...GGTGAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CCA 90 bp | AGTACTCCCCACTGGGAGGGTGGCTCATGTCATGCACCAGTTTCTTaGTCAGTCTCTCCAGTTCCTCTTCAGGAGGTTGGCCTAAGGGGC | + |
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Preference number: 5 (lower is better) Translates to: STPHWEGGSCHAPVS*SVSPVPLQEVGLRG Trigger: GCCCCTTAGGCCAACCTCCTGAAGAGGAACTGGAGAGACTGACCAAGAAACTGGTGCATGACATGAGCCACCCTCCCAGTGGGGAGTACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CCA 90 bp | CCACATCTTCGCCACAGCCACCACACCGACCAAAGTACTCCCCACTaGGAGGGTGGCTCATGTCATGCACCAGTTTCTTGGTCAGTCTCT | + |
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Preference number: 5 (lower is better) Translates to: PHLRHSHHTDQSTPH*EGGSCHAPVSWSVS Trigger: AGAGACTGACCAAGAAACTGGTGCATGACATGAGCCACCCTCCCAGTGGGGAGTACTTTGGTCGGTGTGGTGGCTGTGGCGAAGATGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS GCA 90 bp | CCACACCGACCAAAGTACTCCCCACTGGGAGGGTGGCTCATGTCATaGACCAGTTTCTTGGTCAGTCTCTCCAGTTCCTCTTCAGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: PHRPKYSPLGGWLMS*TSFLVSLSSSSSGG Trigger: ACCTCCTGAAGAGGAACTGGAGAGACTGACCAAGAAACTGGTGCATGACATGAGCCACCCTCCCAGTGGGGAGTACTTTGGTCGGTGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CAA 90 bp | CTCAAACTCACACTCTGCCTCCGCCTCCTGAGTGCTGGAGTTCAAGCTTTCACCTTGAGCCACCTTCACTaGTACAGGGAAAGCAGGGCC | + |
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Preference number: 5 (lower is better) Translates to: LKLTLCLRLLSAGVQAFTLSHLH*YRESRA Trigger: GGCCCTGCTTTCCCTGTACAAGTGAAGGTGGCTCAA...GGTGAAAGCTTGAACTCCAGCACTCAGGAGGCGGAGGCAGAGTGTGAGTTTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CAA 90 bp | GTGCTGGAGTTCAAGCTTTCACCAGCCTCATCCTGTGAGACTCCAATAAAGAACCTGGGAGCATCGGGGTaGGAACAGCACCTCCACTGG | + |
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Preference number: 5 (lower is better) Translates to: VLEFKLSPASSCETPIKNLGASG*EQHLHW Trigger: CCAGTGGAGGTGCTGTTCCAACCCCGATGCTCCCAG...GTTCTTTATTGGAGTCTCACAGGATGAGGCTGGTGAAAGCTTGAACTCCAGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CAA 90 bp | AACTTAGTATGTAAACTAGGCTGGGCTCAAACTCACACTCTGCCTCCGCCTCCTACAGCCTCTCACAGGTaGAGCCACCTTCACTTGTAC | + |
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Preference number: 5 (lower is better) Translates to: NLVCKLGWAQTHTLPPPPTASHR*SHLHLY Trigger: GTACAAGTGAAGGTGGCTCAACCTGTGAGAGGCTGT...AGGAGGCGGAGGCAGAGTGTGAGTTTGAGCCCAGCCTAGTTTACATACTAAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CAA 90 bp | AGGAAGAAAAGACAGCATTTGATGGCAAACACTAAGGGTAGATGTTGGGGGAAGCAGCGGGTAGCAGCCTaGACACTCTCCCTCAGAGGA | + |
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Preference number: 5 (lower is better) Translates to: RKKRQHLMANTKGRCWGKQRVAA*TLSLRG Trigger: TCCTCTGAGGGAGAGTGTCAAGGCTGCTACCCGCTG...CTTCCCCCAACATCTACCCTTAGTGTTTGCCATCAAATGCTGTCTTTTCTTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS-3UTR CAA 90 bp | GTGCTGGAGTTCAAGCTTTCACCAGCCTCATCCTGTGAGACTCCAATAAAGAACTCATGCACCAGTTTCTaGGTCAGTCTCTCCAGTTCC | + |
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Preference number: 5 (lower is better) Translates to: VLEFKLSPASSCETPIKNSCTSF*VSLSSS Trigger: GGAACTGGAGAGACTGACCAAGAAACTGGTGCATGA...GTTCTTTATTGGAGTCTCACAGGATGAGGCTGGTGAAAGCTTGAACTCCAGCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CAA 72 bp | CCCTGGGGTGAGGCTGGAGTGTTGCTCCGTGGGCCGTaGGCGGGCCCAGGGCGCCTCTGGGCAGCGATCTCC | + |
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Preference number: 6 (lower is better) Translates to: PWGEAGVLLRGP*AGPGRLWAAIS Trigger: GGAGATCGCTGCCCAGAGGCGCCCTGGGCCCGCCAACGGCCCACGGAGCAACACTCCAGCCTCACCCCAGGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CCA 72 bp | TTGCTCCGTGGGCCGTTGGCGGGCCCAGGGCGCCTCTaGGCAGCGATCTCCCCTGAGGGAGTCTGGAGGGTT | + |
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Preference number: 6 (lower is better) Translates to: LLRGPLAGPGRL*AAISPEGVWRV Trigger: AACCCTCCAGACTCCCTCAGGGGAGATCGCTGCCCAGAGGCGCCCTGGGCCCGCCAACGGCCCACGGAGCAA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024119.11 ENSMUST00000199121.2 |
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| CDS CCA 72 bp | GGGCGCCTCTGGGCAGCGATCTCCCCTGAGGGAGTCTaGAGGGTTCTGGCTGCTTCGGGGGAAGCCAGGTGG | + |
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Preference number: 6 (lower is better) Translates to: GRLWAAISPEGV*RVLAASGEARW Trigger: CCACCTGGCTTCCCCCGAAGCAGCCAGAACCCTCCAGACTCCCTCAGGGGAGATCGCTGCCCAGAGGCGCCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024119.11 ENSMUST00000199121.2 |
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| CDS CCA 72 bp | ATGATCCCCCTGTCTGGAGGGAGCCCCTGCAGGCGCTaGGGTGTTCCATGGGATCCCACCCAAGTAGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: MIPLSGGSPCRR*GVPWDPTQVGP Trigger: GGGGCCTACTTGGGTGGGATCCCATGGAACACCCCAGCGCCTGCAGGGGCTCCCTCCAGACAGGGGGATCAT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CAA 90 bp | GGCCTGAGAGGCCCCTCGCCTGGGCAGTCCACAGCCTCTCACAGGTaGAGCCACCTTCACTTGTACAGGGAAAGCAGGGCCAGCTGGCGT | + |
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Preference number: 6 (lower is better) Translates to: GLRGPSPGQSTASHR*SHLHLYRESRASWR Trigger: ACGCCAGCTGGCCCTGCTTTCCCTGTACAAGTGAAGGTGGCTCAACCTGTGAGAGGCTGTGGACTGCCCAGGCGAGGGGCCTCTCAGGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS TCA 72 bp | GCGAATCTATCTCAGCATCCAGACTGCCAGGGCGGATaGTCCCCCTGTCTGGAGGGAGCCCCTGCAGGCGCT | + |
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Preference number: 6 (lower is better) Translates to: ANLSQHPDCQGG*SPCLEGAPAGA Trigger: AGCGCCTGCAGGGGCTCCCTCCAGACAGGGGGATCATCCGCCCTGGCAGTCTGGATGCTGAGATAGATTCGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CAA 72 bp | GGCCCCTCGCCTGGGCAGTCCACAGCCTCTCACAGGTaGAGCCACCTTCACTTGTACAGGGAAAGCAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: GPSPGQSTASHR*SHLHLYRESRA Trigger: GGCCCTGCTTTCCCTGTACAAGTGAAGGTGGCTCAACCTGTGAGAGGCTGTGGACTGCCCAGGCGAGGGGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS TCA 72 bp | GCCCCTCGCCTGGGCAGTCCACAGCCTCTCACAGGTTaGGCCACCTTCACTTGTACAGGGAAAGCAGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: APRLGSPQPLTG*ATFTCTGKAGP Trigger: TGGCCCTGCTTTCCCTGTACAAGTGAAGGTGGCTCAACCTGTGAGAGGCTGTGGACTGCCCAGGCGAGGGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CCA 72 bp | AGCCACCTTCACTTGTACAGGGAAAGCAGGGCCAGCTaGCGTGCTCGCGGTAGCATAGGAGGCTGGGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: SHLHLYRESRAS*RARGSIGGWGR Trigger: CCTACCCCAGCCTCCTATGCTACCGCGAGCACGCCAGCTGGCCCTGCTTTCCCTGTACAAGTGAAGGTGGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CAA 90 bp | TCGCCTGGGCAGTCCACAGCCTCTCACAGGTTGAGCCACCTTCACTaGTACAGGGAAAGCAGGGCCAGCTGGCGTGCTCGCGGTAGCATA | + |
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Preference number: 6 (lower is better) Translates to: SPGQSTASHRLSHLH*YRESRASWRARGSI Trigger: TATGCTACCGCGAGCACGCCAGCTGGCCCTGCTTTCCCTGTACAAGTGAAGGTGGCTCAACCTGTGAGAGGCTGTGGACTGCCCAGGCGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS GCA 72 bp | GGGAGCCTCAAAAGCCTGTCTGTCTGGCCGCCTAGGTaGATGACTGCGACCCCCGTCCAGATCAGCCAACAT | + |
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Preference number: 6 (lower is better) Translates to: GSLKSLSVWPPR*MTATPVQISQH Trigger: ATGTTGGCTGATCTGGACGGGGGTCGCAGTCATGCACCTAGGCGGCCAGACAGACAGGCTTTTGAGGCTCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CCA 72 bp | CGCCACAGCCACCACACCGACCAAAGTACTCCCCACTaGGAGGGTGGCTCATGTCATGCACCAGTTTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: RHSHHTDQSTPH*EGGSCHAPVSW Trigger: CCAAGAAACTGGTGCATGACATGAGCCACCCTCCCAGTGGGGAGTACTTTGGTCGGTGTGGTGGCTGTGGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS GCA 72 bp | TTTCTCCAGGGTGGCCACATAGCAGCTCTCACAATATaGCCGCCTCTCCACAGCATAGAAGTGCTGGCCCCG | + |
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Preference number: 6 (lower is better) Translates to: FLQGGHIAALTI*PPLHSIEVLAP Trigger: CGGGGCCAGCACTTCTATGCTGTGGAGAGGCGGGCATATTGTGAGAGCTGCTATGTGGCCACCCTGGAGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS TCA 72 bp | CTTCGATCCAGAGCAACAATTCTCACCGTCTCCTCCTaGCCTGGTTCCGGCATGATGGCCCCACCACACACT | + |
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Preference number: 6 (lower is better) Translates to: LRSRATILTVSS*PGSGMMAPPHT Trigger: AGTGTGTGGTGGGGCCATCATGCCGGAACCAGGTCAGGAGGAGACGGTGAGAATTGTTGCTCTGGATCGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CCA 72 bp | CCACCACACCGACCAAAGTACTCCCCACTGGGAGGGTaGCTCATGTCATGCACCAGTTTCTTGGTCAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: PPHRPKYSPLGG*LMSCTSFLVSL Trigger: GAGACTGACCAAGAAACTGGTGCATGACATGAGCCACCCTCCCAGTGGGGAGTACTTTGGTCGGTGTGGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CAA 90 bp | AAGTACTCCCCACTGGGAGGGTGGCTCATGTCATGCACCAGTTTCTaGGTCAGTCTCTCCAGTTCCTCTTCAGGAGGTTGGCCTAAGGGG | + |
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Preference number: 6 (lower is better) Translates to: KYSPLGGWLMSCTSF*VSLSSSSSGGWPKG Trigger: CCCCTTAGGCCAACCTCCTGAAGAGGAACTGGAGAGACTGACCAAGAAACTGGTGCATGACATGAGCCACCCTCCCAGTGGGGAGTACTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS TCA 72 bp | CTGACCTGGTTCCGGCATGATGGCCCCACCACACACTaGGCATCGTGGGGCAAATTTCCTGTGGAAATCTTC | + |
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Preference number: 6 (lower is better) Translates to: LTWFRHDGPTTH*ASWGKFPVEIF Trigger: GAAGATTTCCACAGGAAATTTGCCCCACGATGCTCAGTGTGTGGTGGGGCCATCATGCCGGAACCAGGTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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| CDS CAA 72 bp | CCACTGGGAGGGTGGCTCATGTCATGCACCAGTTTCTaGGTCAGTCTCTCCAGTTCCTCTTCAGGAGGTTGG | + |
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Preference number: 6 (lower is better) Translates to: PLGGWLMSCTSF*VSLSSSSSGGW Trigger: CCAACCTCCTGAAGAGGAACTGGAGAGACTGACCAAGAAACTGGTGCATGACATGAGCCACCCTCCCAGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024119.11 |
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