Pregenerated sensors for TRIP13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021569Ensembl transcript IDs: ENSMUST00000022053.11, ENSMUST00000222156.2, ENSMUST00000223017.2
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTAGTAGTCAGCCCTAGCTCCAGCCCTAGCTTCCCGTGGGGAAAGTaGAGTCAAGTACCCTCGGGGGCCAAGGAGTCAGAGAGCAGGGTT | + |
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Preference number: 1 (lower is better) Translates to: LVVSPSSSPSFPWGK*SQVPSGAKESESRV Trigger: AACCCTGCTCTCTGACTCCTTGGCCCCCGAGGGTACTTGACTTCACTTTCCCCACGGGAAGCTAGGGCTGGAGCTAGGGCTGACTACTAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR GCA 90 bp | TCGGGGGCCAAGGAGTCAGAGAGCAGGGTTCTGCTTTCAGTGCCCTaGTCGGAACAGGAGGTAGAGTTTAGTAGTCAGGCAGGAGCCAGG | + |
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Preference number: 1 (lower is better) Translates to: SGAKESESRVLLSVP*SEQEVEFSSQAGAR Trigger: CCTGGCTCCTGCCTGACTACTAAACTCTACCTCCTGTTCCGAGCAGGGCACTGAAAGCAGAACCCTGCTCTCTGACTCCTTGGCCCCCGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR TCA 90 bp | CTGGTCAATCTGAGTCAACACAGCATTGACTACTCGGATAGCATCTaGTGGCTCTGCGCCTGCCCTGCAAGCATTTCGAGCAGCTGTGAG | + |
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Preference number: 1 (lower is better) Translates to: LVNLSQHSIDYSDSI*WLCACPASISSSCE Trigger: CTCACAGCTGCTCGAAATGCTTGCAGGGCAGGCGCAGAGCCATCAGATGCTATCCGAGTAGTCAATGCTGTGTTGACTCAGATTGACCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR TCA 90 bp | CATCTGATGGCTCTGCGCCTGCCCTGCAAGCATTTCGAGCAGCTGTaGGACTCTCCACCTCATCAATCAGAACAAACACCAAAGCTTCCT | + |
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Preference number: 1 (lower is better) Translates to: HLMALRLPCKHFEQL*DSPPHQSEQTPKLP Trigger: AGGAAGCTTTGGTGTTTGTTCTGATTGATGAGGTGGAGAGTCTCACAGCTGCTCGAAATGCTTGCAGGGCAGGCGCAGAGCCATCAGATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR GCA 90 bp | CACACTGCTCCTGTGCACTACCAAAGAACTCTTCATCTTCTTACCTaGAGTCCCCTCTCAGTTTCCGTATCACAGCAACACGTCTTTCTC | + |
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Preference number: 1 (lower is better) Translates to: HTAPVHYQRTLHLLT*SPLSVSVSQQHVFL Trigger: GAGAAAGACGTGTTGCTGTGATACGGAAACTGAGAGGGGACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACAGGAGCAGTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022053.11 ENSMUST00000222156.2 |
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| 3UTR TCA 90 bp | AACCAAAGCCGACTCAAGCCAGAAAGCAACTGCTCCCTTCTAGCCTaGGCAAAGAATCCATCTTTCAATGCTGTAACTGCATTAGTTAGC | + |
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Preference number: 1 (lower is better) Translates to: NQSRLKPESNCSLLA*AKNPSFNAVTALVS Trigger: GCTAACTAATGCAGTTACAGCATTGAAAGATGGATTCTTTGCTCAGGCTAGAAGGGAGCAGTTGCTTTCTGGCTTGAGTCGGCTTTGGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022053.11 ENSMUST00000222156.2 |
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| 3UTR TCA 90 bp | CTCAGGAAGCAGATCTCTGTTAAGAGGCCAGCCTGGTCTACATTCTaGGTTCCAAGCCAACCAAATCTACATAGTGAGACTGTCTCAAAA | + |
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Preference number: 1 (lower is better) Translates to: LRKQISVKRPAWSTF*VPSQPNLHSETVSK Trigger: TTTTGAGACAGTCTCACTATGTAGATTTGGTTGGCTTGGAACTCAGAATGTAGACCAGGCTGGCCTCTTAACAGAGATCTGCTTCCTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR CCA 90 bp | TTTGACAAAGATTGTACACCCATCTGTCTGGCCTGCAGATCTACATaGCTTAGAGTCATTTCTGATGCACACTGTGAGGTAGACGGTATC | + |
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Preference number: 1 (lower is better) Translates to: FDKDCTPICLACRST*LRVISDAHCEVDGI Trigger: GATACCGTCTACCTCACAGTGTGCATCAGAAATGACTCTAAGCCATGTAGATCTGCAGGCCAGACAGATGGGTGTACAATCTTTGTCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022053.11 ENSMUST00000222156.2 |
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| 3UTR TCA 90 bp | TCATTTCCAGCTCCCGAAGGGTCAACAGCTGCTGACGAGGATATATaGTCTGGCACTTCATCAGTTCTTCTAAACAAGACAGGTAGATTT | + |
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Preference number: 1 (lower is better) Translates to: SFPAPEGSTAADEDI*SGTSSVLLNKTGRF Trigger: AAATCTACCTGTCTTGTTTAGAAGAACTGATGAAGTGCCAGATCATATATCCTCGTCAGCAGCTGTTGACCCTTCGGGAGCTGGAAATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR GCA 90 bp | ACACATAGTCCTTTTGACAAAGATTGTACACCCATCTGTCTGGCCTaGAGATCTACATGGCTTAGAGTCATTTCTGATGCACACTGTGAG | + |
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Preference number: 1 (lower is better) Translates to: THSPFDKDCTPICLA*RSTWLRVISDAHCE Trigger: CTCACAGTGTGCATCAGAAATGACTCTAAGCCATGTAGATCTGCAGGCCAGACAGATGGGTGTACAATCTTTGTCAAAAGGACTATGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022053.11 ENSMUST00000222156.2 |
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| 3UTR TCA 90 bp | AAATTTCACTCAAAAGGAGGCTCAACTTTGACACATTATTTTCAATaGAGCCAATCATTTCCAGCTCCCGAAGGGTCAACAGCTGCTGAC | + |
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Preference number: 1 (lower is better) Translates to: KFHSKGGSTLTHYFQ*SQSFPAPEGSTAAD Trigger: GTCAGCAGCTGTTGACCCTTCGGGAGCTGGAAATGATTGGCTTCATTGAAAATAATGTGTCAAAGTTGAGCCTCCTTTTGAGTGAAATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR-3UTR CCA 90 bp | GTGAAGTCAAGTACCCTCGGGGGCCAAGGAGTCAGAGAGCAGGGTTCTGCTTTCGTACACCCATCTGTCTaGCCTGCAGATCTACATGGC | + |
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Preference number: 2 (lower is better) Translates to: VKSSTLGGQGVREQGSAFVHPSV*PADLHG Trigger: GCCATGTAGATCTGCAGGCCAGACAGATGGGTGTAC...GAAAGCAGAACCCTGCTCTCTGACTCCTTGGCCCCCGAGGGTACTTGACTTCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR-3UTR TCA 90 bp | CACACACTGCTCCTGTGCACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCGGAAACCCTCGATGGTaGCGCTGGGGGCCTGGATGT | + |
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Preference number: 2 (lower is better) Translates to: HTLLLCTTKELFIFLPAVGNPRW*RWGPGC Trigger: ACATCCAGGCCCCCAGCGTCACCATCGAGGGTTTCC...GACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACAGGAGCAGTGTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR-3UTR GCA 90 bp | TCGGAACAGGAGGTAGAGTTTAGTAGTCAGGCAGGAGCCAGGGCCTGTAGTGTCGAGTGGATGAGTTCCTaGCATGATGCAACTGCACCA | + |
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Preference number: 2 (lower is better) Translates to: SEQEVEFSSQAGARACSVEWMSS*HDATAP Trigger: TGGTGCAGTTGCATCATGGCAGGAACTCATCCACTC...GACACTACAGGCCCTGGCTCCTGCCTGACTACTAAACTCTACCTCCTGTTCCGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR-3UTR GCA 90 bp | TGTGCACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCCCCTCTCAGTTTCGCTCTGCGCCTGCCCTaGAAGCATTTCGAGCAGCTG | + |
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Preference number: 2 (lower is better) Translates to: CALPKNSSSSYLQSPLSFALRLP*KHFEQL Trigger: CAGCTGCTCGAAATGCTTGCAGGGCAGGCGCAGAGC...GAAACTGAGAGGGGACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR-3UTR CCA 90 bp | GAAAGTGAAGTCAAGTACCCTCGGGGGCCAAGGAGTCAGAGAGCAGGGTTCTGCGCCTGCAGATCTACATaGCTTAGAGTCATTTCTGAT | + |
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Preference number: 2 (lower is better) Translates to: ESEVKYPRGPRSQRAGFCACRST*LRVISD Trigger: ATCAGAAATGACTCTAAGCCATGTAGATCTGCAGGC...GCAGAACCCTGCTCTCTGACTCCTTGGCCCCCGAGGGTACTTGACTTCACTTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR-3UTR CCA 90 bp | TGTTTGTCCACTGCCAGAGATAGGGCCTGGAGGAAACCCTCGATGGTGACGCTGGCCTGCAGATCTACATaGCTTAGAGTCATTTCTGAT | + |
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Preference number: 2 (lower is better) Translates to: CLSTARDRAWRKPSMVTLACRST*LRVISD Trigger: ATCAGAAATGACTCTAAGCCATGTAGATCTGCAGGC...CAGCGTCACCATCGAGGGTTTCCTCCAGGCCCTATCTCTGGCAGTGGACAAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR-3UTR CCA 90 bp | TCCTGTGCACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCCCCTCTCAGTGTACACCCATCTGTCTaGCCTGCAGATCTACATGGC | + |
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Preference number: 2 (lower is better) Translates to: SCALPKNSSSSYLQSPLSVHPSV*PADLHG Trigger: GCCATGTAGATCTGCAGGCCAGACAGATGGGTGTAC...ACTGAGAGGGGACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022053.11 ENSMUST00000222156.2 |
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| 3UTR-3UTR TCA 90 bp | CACACACTGCTCCTGTGCACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCAGGGTCAACAGCTGCTaGCGAGGATATATGATCTGG | + |
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Preference number: 2 (lower is better) Translates to: HTLLLCTTKELFIFLPAVRVNSC*RGYMIW Trigger: CCAGATCATATATCCTCGTCAGCAGCTGTTGACCCT...GACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACAGGAGCAGTGTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR-3UTR GCA 90 bp | GTTCCCTTCTGGTGGCCATGTCTATGTACAGGCACATACACCCACACGTATGCAATAGAAAGCACACACTaGTCCTGTGCACTACCAAAG | + |
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Preference number: 2 (lower is better) Translates to: VPFWWPCLCTGTYTHTYAIESTH*SCALPK Trigger: CTTTGGTAGTGCACAGGAGCAGTGTGTGCTTTCTAT...TGCATACGTGTGGGTGTATGTGCCTGTACATAGACATGGCCACCAGAAGGGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR-3UTR GCA 90 bp | CATAGAAAGCACACACTGCTCCTGTGCACTACCAAAGAACTCTTCATCTTCTTAGGGTTCTGCTTTCAGTaGCCTGCTCGGAACAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: HRKHTLLLCTTKELFIFLGFCFQ*PARNRR Trigger: CCTCCTGTTCCGAGCAGGGCACTGAAAGCAGAACCC...TAAGAAGATGAAGAGTTCTTTGGTAGTGCACAGGAGCAGTGTGTGCTTTCTATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR-3UTR TCA 90 bp | CACACACTGCTCCTGTGCACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCTGCTCCCTTCTAGCCTaGGCAAAGAATCCATCTTTC | + |
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Preference number: 2 (lower is better) Translates to: HTLLLCTTKELFIFLPAVCSLLA*AKNPSF Trigger: GAAAGATGGATTCTTTGCTCAGGCTAGAAGGGAGCA...GACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACAGGAGCAGTGTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022053.11 ENSMUST00000222156.2 |
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| 3UTR-3UTR TCA 90 bp | TCGGAACAGGAGGTAGAGTTTAGTAGTCAGGCAGGAGCCAGGGCCTGTAGTGTCAGACTTAATGCTGTGTaGGTATGCCAGTCATTATTA | + |
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Preference number: 2 (lower is better) Translates to: SEQEVEFSSQAGARACSVRLNAV*VCQSLL Trigger: TAATAATGACTGGCATACTCACACAGCATTAAGTCT...GACACTACAGGCCCTGGCTCCTGCCTGACTACTAAACTCTACCTCCTGTTCCGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR-3UTR GCA 90 bp | TGTGCACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCCCCTCTCAGTTTCCCCATCTGTCTGGCCTaGAGATCTACATGGCTTAGA | + |
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Preference number: 2 (lower is better) Translates to: CALPKNSSSSYLQSPLSFPICLA*RSTWLR Trigger: TCTAAGCCATGTAGATCTGCAGGCCAGACAGATGGG...GAAACTGAGAGGGGACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022053.11 ENSMUST00000222156.2 |
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| 3UTR-3UTR GCA 90 bp | TCGGAACAGGAGGTAGAGTTTAGTAGTCAGGCAGGAGCCAGGGCCTGTAGTGTCAGAAACAAAACACATTaGCTGATTGACGTGACCATA | + |
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Preference number: 2 (lower is better) Translates to: SEQEVEFSSQAGARACSVRNKTH*LIDVTI Trigger: TATGGTCACGTCAATCAGGCAATGTGTTTTGTTTCT...GACACTACAGGCCCTGGCTCCTGCCTGACTACTAAACTCTACCTCCTGTTCCGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR-3UTR TCA 90 bp | ACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCCCCTCTCAGTTTCCGTATTGCTCCCTTCTAGCCTaGGCAAAGAATCCATCTTTC | + |
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Preference number: 2 (lower is better) Translates to: TTKELFIFLPAVPSQFPYCSLLA*AKNPSF Trigger: GAAAGATGGATTCTTTGCTCAGGCTAGAAGGGAGCA...ATACGGAAACTGAGAGGGGACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022053.11 ENSMUST00000222156.2 |
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| 3UTR-3UTR TCA 90 bp | CATAGAAAGCACACACTGCTCCTGTGCACTACCAAAGAACTCTTCATCTTCTTACATTTCGAGCAGCTGTaGGACTCTCCACCTCATCAA | + |
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Preference number: 2 (lower is better) Translates to: HRKHTLLLCTTKELFIFLHFEQL*DSPPHQ Trigger: TTGATGAGGTGGAGAGTCTCACAGCTGCTCGAAATG...TAAGAAGATGAAGAGTTCTTTGGTAGTGCACAGGAGCAGTGTGTGCTTTCTATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR-3UTR TCA 90 bp | TGTGCACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCCCCTCTCAGTTTCGCCCTCACTCTTCCTTaGAATTTCACTCAAAAGGAG | + |
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Preference number: 2 (lower is better) Translates to: CALPKNSSSSYLQSPLSFALTLP*NFTQKE Trigger: CTCCTTTTGAGTGAAATTTCAAGGAAGAGTGAGGGC...GAAACTGAGAGGGGACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR-3UTR GCA 90 bp | TGTGCACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCCCCTCTCAGTTTCATAGAAAGCACACACTaGTCCTGTGCACTACCAAAG | + |
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Preference number: 2 (lower is better) Translates to: CALPKNSSSSYLQSPLSFIESTH*SCALPK Trigger: CTTTGGTAGTGCACAGGAGCAGTGTGTGCTTTCTAT...GAAACTGAGAGGGGACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022053.11 ENSMUST00000222156.2 |
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| 3UTR-3UTR CCA 90 bp | TTAAGAGGCCAGCCTGGTCTACATTCTGAGTTCCAAGCCAACCAAATCTACATATGCACCATGAGATCCTaGGAGCACAGCAGACTTAAT | + |
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Preference number: 2 (lower is better) Translates to: LRGQPGLHSEFQANQIYICTMRS*EHSRLN Trigger: ATTAAGTCTGCTGTGCTCCCAGGATCTCATGGTGCA...TATGTAGATTTGGTTGGCTTGGAACTCAGAATGTAGACCAGGCTGGCCTCTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR-3UTR TCA 90 bp | TGTGCACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCCCCTCTCAGTTTCTTAATCTGGTCAATCTaGGTCAACACAGCATTGACT | + |
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Preference number: 2 (lower is better) Translates to: CALPKNSSSSYLQSPLSFLIWSI*VNTALT Trigger: AGTCAATGCTGTGTTGACTCAGATTGACCAGATTAA...GAAACTGAGAGGGGACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR-3UTR TCA 90 bp | CATAGAAAGCACACACTGCTCCTGTGCACTACCAAAGAACTCTTCATCTTCTTACATCAATCTTCTCAGTaGTGTTGGAAGTGGTCAGAA | + |
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Preference number: 2 (lower is better) Translates to: HRKHTLLLCTTKELFIFLHQSSQ*CWKWSE Trigger: TTCTGACCACTTCCAACATCACTGAGAAGATTGATG...TAAGAAGATGAAGAGTTCTTTGGTAGTGCACAGGAGCAGTGTGTGCTTTCTATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR-3UTR GCA 90 bp | TGTGCACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCCCCTCTCAGTTTCATCACCACATTGGAATaGCTTTTAATCTGGTCAATC | + |
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Preference number: 2 (lower is better) Translates to: CALPKNSSSSYLQSPLSFITTLE*LLIWSI Trigger: GATTGACCAGATTAAAAGGCATTCCAATGTGGTGAT...GAAACTGAGAGGGGACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR TCA 72 bp | AGCCCTAGCTCCAGCCCTAGCTTCCCGTGGGGAAAGTaGAGTCAAGTACCCTCGGGGGCCAAGGAGTCAGAG | + |
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Preference number: 3 (lower is better) Translates to: SPSSSPSFPWGK*SQVPSGAKESE Trigger: CTCTGACTCCTTGGCCCCCGAGGGTACTTGACTTCACTTTCCCCACGGGAAGCTAGGGCTGGAGCTAGGGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR CCA 72 bp | TCCTCAAACTGTTTGTCCACTGCCAGAGATAGGGCCTaGAGGAAACCCTCGATGGTGACGCTGGGGGCCTGG | + |
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Preference number: 3 (lower is better) Translates to: SSNCLSTARDRA*RKPSMVTLGAW Trigger: CCAGGCCCCCAGCGTCACCATCGAGGGTTTCCTCCAGGCCCTATCTCTGGCAGTGGACAAACAGTTTGAGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR-3UTR CAA 90 bp | GCCAGAGATAGGGCCTGGAGGAAACCCTCGATGGTGACGCTGGGGGCCTGGATGTTGTGTCTGACAGGCTaGAGTCAGGATGGGGCTTTA | + |
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Preference number: 3 (lower is better) Translates to: ARDRAWRKPSMVTLGAWMLCLTG*SQDGAL Trigger: TAAAGCCCCATCCTGACTCAAGCCTGTCAGACACAA...CATCCAGGCCCCCAGCGTCACCATCGAGGGTTTCCTCCAGGCCCTATCTCTGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR-3UTR CAA 90 bp | GTGAAGTCAAGTACCCTCGGGGGCCAAGGAGTCAGAGAGCAGGGTTCTGCTTTCTTGTGTCTGACAGGCTaGAGTCAGGATGGGGCTTTA | + |
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Preference number: 3 (lower is better) Translates to: VKSSTLGGQGVREQGSAFLCLTG*SQDGAL Trigger: TAAAGCCCCATCCTGACTCAAGCCTGTCAGACACAA...GAAAGCAGAACCCTGCTCTCTGACTCCTTGGCCCCCGAGGGTACTTGACTTCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR TCA 72 bp | GGGCCTGTAGTGTCTCAGAAGTGCCACCCTCAAACCTaGTTGGCAGAGTGGATGAGTTCCTGCCATGATGCA | + |
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Preference number: 3 (lower is better) Translates to: GPVVSQKCHPQT*LAEWMSSCHDA Trigger: TGCATCATGGCAGGAACTCATCCACTCTGCCAATCAGGTTTGAGGGTGGCACTTCTGAGACACTACAGGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR TCA 72 bp | GCTCTGCGCCTGCCCTGCAAGCATTTCGAGCAGCTGTaGGACTCTCCACCTCATCAATCAGAACAAACACCA | + |
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Preference number: 3 (lower is better) Translates to: ALRLPCKHFEQL*DSPPHQSEQTP Trigger: TGGTGTTTGTTCTGATTGATGAGGTGGAGAGTCTCACAGCTGCTCGAAATGCTTGCAGGGCAGGCGCAGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR TCA 72 bp | CTGAGTCAACACAGCATTGACTACTCGGATAGCATCTaGTGGCTCTGCGCCTGCCCTGCAAGCATTTCGAGC | + |
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Preference number: 3 (lower is better) Translates to: LSQHSIDYSDSI*WLCACPASISS Trigger: GCTCGAAATGCTTGCAGGGCAGGCGCAGAGCCATCAGATGCTATCCGAGTAGTCAATGCTGTGTTGACTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR GCA 72 bp | AAGGAGTCAGAGAGCAGGGTTCTGCTTTCAGTGCCCTaGTCGGAACAGGAGGTAGAGTTTAGTAGTCAGGCA | + |
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Preference number: 3 (lower is better) Translates to: KESESRVLLSVP*SEQEVEFSSQA Trigger: TGCCTGACTACTAAACTCTACCTCCTGTTCCGAGCAGGGCACTGAAAGCAGAACCCTGCTCTCTGACTCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR CCA 72 bp | AGCGTGATAGAGGAGGAAACTGATGTTCCCTTCTGGTaGCCATGTCTATGTACAGGCACATACACCCACACG | + |
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Preference number: 3 (lower is better) Translates to: SVIEEETDVPFW*PCLCTGTYTHT Trigger: CGTGTGGGTGTATGTGCCTGTACATAGACATGGCCACCAGAAGGGAACATCAGTTTCCTCCTCTATCACGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR TCA 72 bp | GAGCCAGGAAAGGAAGTTTCCTCAAGACCCGGCCACTaGGGCCCTCACTCTTCCTTGAAATTTCACTCAAAA | + |
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Preference number: 3 (lower is better) Translates to: EPGKEVSSRPGH*GPHSSLKFHSK Trigger: TTTTGAGTGAAATTTCAAGGAAGAGTGAGGGCCTCAGTGGCCGGGTCTTGAGGAAACTTCCTTTCCTGGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR TCA 72 bp | CGACTCAAGCCAGAAAGCAACTGCTCCCTTCTAGCCTaGGCAAAGAATCCATCTTTCAATGCTGTAACTGCA | + |
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Preference number: 3 (lower is better) Translates to: RLKPESNCSLLA*AKNPSFNAVTA Trigger: TGCAGTTACAGCATTGAAAGATGGATTCTTTGCTCAGGCTAGAAGGGAGCAGTTGCTTTCTGGCTTGAGTCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022053.11 ENSMUST00000222156.2 |
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| 3UTR TCA 72 bp | GCTCCCGAAGGGTCAACAGCTGCTGACGAGGATATATaGTCTGGCACTTCATCAGTTCTTCTAAACAAGACA | + |
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Preference number: 3 (lower is better) Translates to: APEGSTAADEDI*SGTSSVLLNKT Trigger: TGTCTTGTTTAGAAGAACTGATGAAGTGCCAGATCATATATCCTCGTCAGCAGCTGTTGACCCTTCGGGAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR CCA 72 bp | GATTGTACACCCATCTGTCTGGCCTGCAGATCTACATaGCTTAGAGTCATTTCTGATGCACACTGTGAGGTA | + |
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Preference number: 3 (lower is better) Translates to: DCTPICLACRST*LRVISDAHCEV Trigger: TACCTCACAGTGTGCATCAGAAATGACTCTAAGCCATGTAGATCTGCAGGCCAGACAGATGGGTGTACAATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022053.11 ENSMUST00000222156.2 |
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| 3UTR-3UTR CAA 90 bp | TGTGCACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCCCCTCTCAGTTTCGGCCCTCACTCTTCCTaGAAATTTCACTCAAAAGGA | + |
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Preference number: 3 (lower is better) Translates to: CALPKNSSSSYLQSPLSFGPHSS*KFHSKG Trigger: TCCTTTTGAGTGAAATTTCAAGGAAGAGTGAGGGCC...GAAACTGAGAGGGGACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR TCA 72 bp | CAGATCTCTGTTAAGAGGCCAGCCTGGTCTACATTCTaGGTTCCAAGCCAACCAAATCTACATAGTGAGACT | + |
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Preference number: 3 (lower is better) Translates to: QISVKRPAWSTF*VPSQPNLHSET Trigger: AGTCTCACTATGTAGATTTGGTTGGCTTGGAACTCAGAATGTAGACCAGGCTGGCCTCTTAACAGAGATCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR TCA 72 bp | GTACGGTGGTCATCACATAATCAAGGAGATGTGATTTaGCCTCCACATCATACACGAGGCTATCCCAAAGTC | + |
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Preference number: 3 (lower is better) Translates to: VRWSSHNQGDVI*PPHHTRGYPKV Trigger: GACTTTGGGATAGCCTCGTGTATGATGTGGAGGTCAAATCACATCTCCTTGATTATGTGATGACCACCGTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223017.2 |
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| 3UTR TCA 72 bp | ATGAGATCCTGGGAGCACAGCAGACTTAATGCTGTGTaGGTATGCCAGTCATTATTAGTAAAACTCACAGCA | + |
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Preference number: 3 (lower is better) Translates to: MRSWEHSRLNAV*VCQSLLVKLTA Trigger: TGCTGTGAGTTTTACTAATAATGACTGGCATACTCACACAGCATTAAGTCTGCTGTGCTCCCAGGATCTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR-3UTR CAA 90 bp | ACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCCCCTCTCAGTTTCCGTATGACAAGCAGTCTTTTTaGCCTTTAGATATGCACTGT | + |
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Preference number: 3 (lower is better) Translates to: TTKELFIFLPAVPSQFPYDKQSF*PLDMHC Trigger: ACAGTGCATATCTAAAGGCAAAAAAGACTGCTTGTC...ATACGGAAACTGAGAGGGGACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022053.11 ENSMUST00000222156.2 |
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| 3UTR TCA 72 bp | TCAAAAGGAGGCTCAACTTTGACACATTATTTTCAATaGAGCCAATCATTTCCAGCTCCCGAAGGGTCAACA | + |
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Preference number: 3 (lower is better) Translates to: SKGGSTLTHYFQ*SQSFPAPEGST Trigger: TGTTGACCCTTCGGGAGCTGGAAATGATTGGCTTCATTGAAAATAATGTGTCAAAGTTGAGCCTCCTTTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000222156.2 |
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| 3UTR-3UTR CAA 90 bp | GGCTTGAGTCAGGATGGGGCTTTACATAGATGCAAACAGACTGGAATTATCTTTGACAAGCAGTCTTTTTaGCCTTTAGATATGCACTGT | + |
|
Preference number: 3 (lower is better) Translates to: GLSQDGALHRCKQTGIIFDKQSF*PLDMHC Trigger: ACAGTGCATATCTAAAGGCAAAAAAGACTGCTTGTC...AAAGATAATTCCAGTCTGTTTGCATCTATGTAAAGCCCCATCCTGACTCAAGCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022053.11 ENSMUST00000222156.2 |
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| 3UTR TCA 72 bp | AAGGGAGTGGTTTTAGACACTTCTTCTGCATCTACATaGATGATAACAGTCAGAACAACAGACATTTATTCC | + |
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Preference number: 3 (lower is better) Translates to: KGVVLDTSSAST*MITVRTTDIYS Trigger: GGAATAAATGTCTGTTGTTCTGACTGTTATCATTCATGTAGATGCAGAAGAAGTGTCTAAAACCACTCCCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR GCA 90 bp | TCGGAACAGGAGGTAGAGTTTAGTAGTCAGGCAGGAGCCAGGGCCTGTAGTGTCGTACCCGGAGGACCGTaGAGCAGCACCACCCGGTTC | + |
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Preference number: 4 (lower is better) Translates to: SEQEVEFSSQAGARACSVVPGGP*SSTTRF Trigger: GAACCGGGTGGTGCTGCTGCACGGTCCTCCGGGTAC...GACACTACAGGCCCTGGCTCCTGCCTGACTACTAAACTCTACCTCCTGTTCCGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR TCA 90 bp | GTGAAGTCAAGTACCCTCGGGGGCCAAGGAGTCAGAGAGCAGGGTTCTGCTTTCAGGGTCAACAGCTGCTaGCGAGGATATATGATCTGG | + |
|
Preference number: 4 (lower is better) Translates to: VKSSTLGGQGVREQGSAFRVNSC*RGYMIW Trigger: CCAGATCATATATCCTCGTCAGCAGCTGTTGACCCT...GAAAGCAGAACCCTGCTCTCTGACTCCTTGGCCCCCGAGGGTACTTGACTTCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR TCA 90 bp | GTGAAGTCAAGTACCCTCGGGGGCCAAGGAGTCAGAGAGCAGGGTTCTGCTTTCCTATCCCAAAGTCCATaGAATTCAGCTGCAGGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: VKSSTLGGQGVREQGSAFLSQSP*NSAAGR Trigger: TCTGCCTGCAGCTGAATTTCATGGACTTTGGGATAG...GAAAGCAGAACCCTGCTCTCTGACTCCTTGGCCCCCGAGGGTACTTGACTTCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR TCA 90 bp | TCGGAACAGGAGGTAGAGTTTAGTAGTCAGGCAGGAGCCAGGGCCTGTAGTGTCCATTTCGAGCAGCTGTaGGACTCTCCACCTCATCAA | + |
|
Preference number: 4 (lower is better) Translates to: SEQEVEFSSQAGARACSVHFEQL*DSPPHQ Trigger: TTGATGAGGTGGAGAGTCTCACAGCTGCTCGAAATG...GACACTACAGGCCCTGGCTCCTGCCTGACTACTAAACTCTACCTCCTGTTCCGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR GCA 90 bp | GTTCCCTTCTGGTGGCCATGTCTATGTACAGGCACATACACCCACACGTATGCATTGCAGTGCTTCCGCTaGGCTGCAGAACCTCCACAT | + |
|
Preference number: 4 (lower is better) Translates to: VPFWWPCLCTGTYTHTYALQCFR*AAEPPH Trigger: ATGTGGAGGTTCTGCAGCGCAGCGGAAGCACTGCAA...TGCATACGTGTGGGTGTATGTGCCTGTACATAGACATGGCCACCAGAAGGGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR TCA 90 bp | GAAAGTGAAGTCAAGTACCCTCGGGGGCCAAGGAGTCAGAGAGCAGGGTTCTGCGCCCTCACTCTTCCTTaGAATTTCACTCAAAAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: ESEVKYPRGPRSQRAGFCALTLP*NFTQKE Trigger: CTCCTTTTGAGTGAAATTTCAAGGAAGAGTGAGGGC...GCAGAACCCTGCTCTCTGACTCCTTGGCCCCCGAGGGTACTTGACTTCACTTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR TCA 90 bp | CATAGAAAGCACACACTGCTCCTGTGCACTACCAAAGAACTCTTCATCTTCTTAGGAAACCCTCGATGGTaGCGCTGGGGGCCTGGATGT | + |
|
Preference number: 4 (lower is better) Translates to: HRKHTLLLCTTKELFIFLGNPRW*RWGPGC Trigger: ACATCCAGGCCCCCAGCGTCACCATCGAGGGTTTCC...TAAGAAGATGAAGAGTTCTTTGGTAGTGCACAGGAGCAGTGTGTGCTTTCTATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR GCA 90 bp | CATAGAAAGCACACACTGCTCCTGTGCACTACCAAAGAACTCTTCATCTTCTTAACACAGGGAAGCGCTTaGTTCAGGTCGCCCACCGCC | + |
|
Preference number: 4 (lower is better) Translates to: HRKHTLLLCTTKELFIFLTQGSA*FRSPTA Trigger: GGCGGTGGGCGACCTGAAGCAAGCGCTTCCCTGTGT...TAAGAAGATGAAGAGTTCTTTGGTAGTGCACAGGAGCAGTGTGTGCTTTCTATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR GCA 90 bp | ATCCCAAAGTCCATGAAATTCAGCTGTTGGAACCCAGTAGCAAAGACCTCAGAGCAGGCAAGGACTGCCTaGAGGCAGAACCCAGTGACT | + |
|
Preference number: 4 (lower is better) Translates to: IPKSMKFSCWNPVAKTSEQARTA*RQNPVT Trigger: AGTCACTGGGTTCTGCCTGCAGGCAGTCCTTGCCTG...CTCTGAGGTCTTTGCTACTGGGTTCCAACAGCTGAATTTCATGGACTTTGGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223017.2 |
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| CDS-3UTR GCA 90 bp | GAGTTCCAAGCCAACCAAATCTACATAGTGAGACTGTCTCAAAACCCAAAACCTGCTCTGCGCCTGCCCTaGAAGCATTTCGAGCAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: EFQANQIYIVRLSQNPKPALRLP*KHFEQL Trigger: CAGCTGCTCGAAATGCTTGCAGGGCAGGCGCAGAGC...AGGTTTTGGGTTTTGAGACAGTCTCACTATGTAGATTTGGTTGGCTTGGAACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR GCA 90 bp | ATCATACACGAGGCTATCCCAAAGTCCATGAAATTCAGCTGTTGGAACCCAGTAACAGCAGGCAAGGACTaGCTGCAGGCAGAACCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: IIHEAIPKSMKFSCWNPVTAGKD*LQAEPS Trigger: ACTGGGTTCTGCCTGCAGGCAGTCCTTGCCTGCTGT...TACTGGGTTCCAACAGCTGAATTTCATGGACTTTGGGATAGCCTCGTGTATGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223017.2 |
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| CDS-3UTR CCA 90 bp | ACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCCCCTCTCAGTTTCCGTATGCCAGAGATAGGGCCTaGAGGAAACCCTCGATGGTG | + |
|
Preference number: 4 (lower is better) Translates to: TTKELFIFLPAVPSQFPYARDRA*RKPSMV Trigger: CACCATCGAGGGTTTCCTCCAGGCCCTATCTCTGGC...ATACGGAAACTGAGAGGGGACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR TCA 90 bp | TCGGAACAGGAGGTAGAGTTTAGTAGTCAGGCAGGAGCCAGGGCCTGTAGTGTCTTAATCTGGTCAATCTaGGTCAACACAGCATTGACT | + |
|
Preference number: 4 (lower is better) Translates to: SEQEVEFSSQAGARACSVLIWSI*VNTALT Trigger: AGTCAATGCTGTGTTGACTCAGATTGACCAGATTAA...GACACTACAGGCCCTGGCTCCTGCCTGACTACTAAACTCTACCTCCTGTTCCGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR GCA 90 bp | CATACACGAGGCTATCCCAAAGTCCATGAAATTCAGCTGTTGGAACCCAGTAGCCATCCAAATTCTCACTaGTGGGGCCTTCTTCATTCA | + |
|
Preference number: 4 (lower is better) Translates to: HTRGYPKVHEIQLLEPSSHPNSH*WGLLHS Trigger: TGAATGAAGAAGGCCCCAGCAGTGAGAATTTGGATG...GCTACTGGGTTCCAACAGCTGAATTTCATGGACTTTGGGATAGCCTCGTGTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223017.2 |
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| CDS-3UTR TCA 90 bp | CACACACTGCTCCTGTGCACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCCATCAATCTTCTCAGTaGTGTTGGAAGTGGTCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: HTLLLCTTKELFIFLPAVHQSSQ*CWKWSE Trigger: TTCTGACCACTTCCAACATCACTGAGAAGATTGATG...GACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACAGGAGCAGTGTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR TCA 90 bp | CATAGAAAGCACACACTGCTCCTGTGCACTACCAAAGAACTCTTCATCTTCTTAGGCCAATGTATTGCTTaGTGTCAGCTCTATCCACGA | + |
|
Preference number: 4 (lower is better) Translates to: HRKHTLLLCTTKELFIFLGQCIA*CQLYPR Trigger: TCGTGGATAGAGCTGACATCAAGCAATACATTGGCC...TAAGAAGATGAAGAGTTCTTTGGTAGTGCACAGGAGCAGTGTGTGCTTTCTATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR GCA 90 bp | GGCTTGAGTCAGGATGGGGCTTTACATAGATGCAAACAGACTGGAATTATCTTTCATCCAAATTCTCACTaGTGGGGCCTTCTTCATTCA | + |
|
Preference number: 4 (lower is better) Translates to: GLSQDGALHRCKQTGIIFHPNSH*WGLLHS Trigger: TGAATGAAGAAGGCCCCAGCAGTGAGAATTTGGATG...AAAGATAATTCCAGTCTGTTTGCATCTATGTAAAGCCCCATCCTGACTCAAGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR GCA 90 bp | CACACACTGCTCCTGTGCACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCATCACCACATTGGAATaGCTTTTAATCTGGTCAATC | + |
|
Preference number: 4 (lower is better) Translates to: HTLLLCTTKELFIFLPAVITTLE*LLIWSI Trigger: GATTGACCAGATTAAAAGGCATTCCAATGTGGTGAT...GACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACAGGAGCAGTGTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR GCA 90 bp | CACACACTGCTCCTGTGCACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCCTGACTGAACATTTCTaGTTAGAAAAGGATCATCAA | + |
|
Preference number: 4 (lower is better) Translates to: HTLLLCTTKELFIFLPAVLTEHF*LEKDHQ Trigger: TTGATGATCCTTTTCTAAGCAGAAATGTTCAGTCAG...GACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACAGGAGCAGTGTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| 3UTR CAA 72 bp | GTCCAGGGTAACCCTGTTTTGGTTTACCCTTGGGTTTaGTTGTTCCCTCCTTTCGATTTCCTAATATTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: VQGNPVLVYPWV*LFPPFDFLIFC Trigger: ACAAAATATTAGGAAATCGAAAGGAGGGAACAACAAAACCCAAGGGTAAACCAAAACAGGGTTACCCTGGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR TCA 90 bp | TTAAGAGGCCAGCCTGGTCTACATTCTGAGTTCCAAGCCAACCAAATCTACATAATAATCAAGGAGATGTaGTTTGACCTCCACATCATA | + |
|
Preference number: 4 (lower is better) Translates to: LRGQPGLHSEFQANQIYIIIKEM*FDLHII Trigger: TATGATGTGGAGGTCAAATCACATCTCCTTGATTAT...TATGTAGATTTGGTTGGCTTGGAACTCAGAATGTAGACCAGGCTGGCCTCTTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR CCA 90 bp | GAGTTCCAAGCCAACCAAATCTACATAGTGAGACTGTCTCAAAACCCAAAACCTCGAGGATATATGATCTaGCACTTCATCAGTTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: EFQANQIYIVRLSQNPKPRGYMI*HFISSS Trigger: AGAAGAACTGATGAAGTGCCAGATCATATATCCTCG...AGGTTTTGGGTTTTGAGACAGTCTCACTATGTAGATTTGGTTGGCTTGGAACTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR GCA 90 bp | ATCATACACGAGGCTATCCCAAAGTCCATGAAATTCAGCTGTTGGAACCCAGTACTGACTGAACATTTCTaGTTAGAAAAGGATCATCAA | + |
|
Preference number: 4 (lower is better) Translates to: IIHEAIPKSMKFSCWNPVLTEHF*LEKDHQ Trigger: TTGATGATCCTTTTCTAAGCAGAAATGTTCAGTCAG...TACTGGGTTCCAACAGCTGAATTTCATGGACTTTGGGATAGCCTCGTGTATGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223017.2 |
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| CDS-3UTR GCA 90 bp | TTGGTTTACCCTTGGGTTTTGTTGTTCCCTCCTTTCGATTTCCTAATATTTTGTTGTGAAGTGCAATGGTaGATGCACTCAGATCAATGG | + |
|
Preference number: 4 (lower is better) Translates to: LVYPWVLLFPPFDFLIFCCEVQW*MHSDQW Trigger: CCATTGATCTGAGTGCATGCACCATTGCACTTCACA...ACAAAATATTAGGAAATCGAAAGGAGGGAACAACAAAACCCAAGGGTAAACCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR CCA 90 bp | TTGGTTTACCCTTGGGTTTTGTTGTTCCCTCCTTTCGATTTCCTAATATTTTGTCTGAGAAGAGTACGGTaGTCATCACATAATCAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: LVYPWVLLFPPFDFLIFCLRRVR*SSHNQG Trigger: TCCTTGATTATGTGATGACCACCGTACTCTTCTCAG...ACAAAATATTAGGAAATCGAAAGGAGGGAACAACAAAACCCAAGGGTAAACCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR CAA 90 bp | GTTCCCTTCTGGTGGCCATGTCTATGTACAGGCACATACACCCACACGTATGCAAACACAGGGAAGCGCTaGCTTCAGGTCGCCCACCGC | + |
|
Preference number: 5 (lower is better) Translates to: VPFWWPCLCTGTYTHTYANTGKR*LQVAHR Trigger: GCGGTGGGCGACCTGAAGCAAGCGCTTCCCTGTGTT...TGCATACGTGTGGGTGTATGTGCCTGTACATAGACATGGCCACCAGAAGGGAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR CAA 90 bp | GTGAAGTCAAGTACCCTCGGGGGCCAAGGAGTCAGAGAGCAGGGTTCTGCTTTCTTCCAGGTGATGAGGTaGCTGTCCACGTTCTTGTCT | + |
|
Preference number: 5 (lower is better) Translates to: VKSSTLGGQGVREQGSAFFQVMR*LSTFLS Trigger: AGACAAGAACGTGGACAGCAACCTCATCACCTGGAA...GAAAGCAGAACCCTGCTCTCTGACTCCTTGGCCCCCGAGGGTACTTGACTTCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR CAA 90 bp | ATGCCTGAGATCCTAGCACTCAGGAAGCAGATCTCTGTTAAGAGGCCAGCCTGGGGCCCTCACTCTTCCTaGAAATTTCACTCAAAAGGA | + |
|
Preference number: 5 (lower is better) Translates to: MPEILALRKQISVKRPAWGPHSS*KFHSKG Trigger: TCCTTTTGAGTGAAATTTCAAGGAAGAGTGAGGGCC...CCAGGCTGGCCTCTTAACAGAGATCTGCTTCCTGAGTGCTAGGATCTCAGGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS-3UTR CAA 90 bp | CACACACTGCTCCTGTGCACTACCAAAGAACTCTTCATCTTCTTACCTGCAGTCGGGCCAATGTATTGCTaGATGTCAGCTCTATCCACG | + |
|
Preference number: 5 (lower is better) Translates to: HTLLLCTTKELFIFLPAVGPMYC*MSALST Trigger: CGTGGATAGAGCTGACATCAAGCAATACATTGGCCC...GACTGCAGGTAAGAAGATGAAGAGTTCTTTGGTAGTGCACAGGAGCAGTGTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS CCA 72 bp | TTTGCAGTGCTTCCGCTGCGCTGCAGAACCTCCACATaGACCGCGGGCGATTCGGCAACACAGGGAAGCGCT | + |
|
Preference number: 6 (lower is better) Translates to: FAVLPLRCRTST*TAGDSATQGSA Trigger: AGCGCTTCCCTGTGTTGCCGAATCGCCCGCGGTCCATGTGGAGGTTCTGCAGCGCAGCGGAAGCACTGCAAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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| CDS TCA 72 bp | TCCAGACGTAATCTCCAAACACAATATTATGCCGGTTaGGCAGCCTGTAAACACTCGACTTTATATCTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: SRRNLQTQYYAG*AACKHSTLYLL Trigger: AAGAAGATATAAAGTCGAGTGTTTACAGGCTGCTCAACCGGCATAATATTGTGTTTGGAGATTACGTCTGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022053.11 |
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