RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRIM71 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079259

Ensembl transcript IDs: ENSMUST00000111816.3

Found 259 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTCGTAGCTCACACAGGCAAACTGAGCATCCCAAAGCAATTCGACTaGGCCCTTATCCTGTCCCCACCGCCTCTTCCTCTGTGGAGTTCC +
Preference number: 1 (lower is better)
Translates to: VVAHTGKLSIPKQFD*ALILSPPPLPLWSS
Trigger: GGAACTCCACAGAGGAAGAGGCGGTGGGGACAGGATAAGGGCTCAGTCGAATTGCTTTGGGATGCTCAGTTTGCCTGTGTGAGCTACGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR GCA 90 bp TTGGCTCAATCTACAAAATGCATGCACCCCACCATATGCTTCCAGTaGCCTCAAGGTTGCAGGACCGCTGTCCTGTGCCTCCTAGGCCTT +
Preference number: 1 (lower is better)
Translates to: LAQSTKCMHPTICFQ*PQGCRTAVLCLLGL
Trigger: AAGGCCTAGGAGGCACAGGACAGCGGTCCTGCAACCTTGAGGGCACTGGAAGCATATGGTGGGGTGCATGCATTTTGTAGATTGAGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR GCA 90 bp TGGGTTTCCTTGGCTCAATCTACAAAATGCATGCACCCCACCATATaGTTCCAGTGCCCTCAAGGTTGCAGGACCGCTGTCCTGTGCCTC +
Preference number: 1 (lower is better)
Translates to: WVSLAQSTKCMHPTI*FQCPQGCRTAVLCL
Trigger: GAGGCACAGGACAGCGGTCCTGCAACCTTGAGGGCACTGGAAGCATATGGTGGGGTGCATGCATTTTGTAGATTGAGCCAAGGAAACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 90 bp CCGGTCACTGTAGACGGGCTACACCGCCGTGACGGGAGATTCTGCTaGGCACAGACAGCTTCAAATACAATCATGAAGTCAGAGACTCTC +
Preference number: 1 (lower is better)
Translates to: PVTVDGLHRRDGRFC*AQTASNTIMKSETL
Trigger: GAGAGTCTCTGACTTCATGATTGTATTTGAAGCTGTCTGTGCCCAGCAGAATCTCCCGTCACGGCGGTGTAGCCCGTCTACAGTGACCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR GCA 90 bp TCACCGGTCACTGTAGACGGGCTACACCGCCGTGACGGGAGATTCTaGTGGGCACAGACAGCTTCAAATACAATCATGAAGTCAGAGACT +
Preference number: 1 (lower is better)
Translates to: SPVTVDGLHRRDGRF*WAQTASNTIMKSET
Trigger: AGTCTCTGACTTCATGATTGTATTTGAAGCTGTCTGTGCCCAGCAGAATCTCCCGTCACGGCGGTGTAGCCCGTCTACAGTGACCGGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 90 bp CACGGTGTCTCCTTCCTGAATCTCTTTCCTGTCGTACCTCAGAACTaGCTGCAGGTGCTCACCAAACATGGCTGGTGTCATGATATGGAT +
Preference number: 1 (lower is better)
Translates to: HGVSFLNLFPVVPQN*LQVLTKHGWCHDMD
Trigger: ATCCATATCATGACACCAGCCATGTTTGGTGAGCACCTGCAGCCAGTTCTGAGGTACGACAGGAAAGAGATTCAGGAAGGAGACACCGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 90 bp GCAACCAGGTGGTTAATACTCAAACTTAAGAAACTTCACTTCCAATaGGAATCTCCTGGTACCCACCCTCACCAGCTCCTGCCAGCTCCT +
Preference number: 1 (lower is better)
Translates to: ATRWLILKLKKLHFQ*ESPGTHPHQLLPAP
Trigger: AGGAGCTGGCAGGAGCTGGTGAGGGTGGGTACCAGGAGATTCCCATTGGAAGTGAAGTTTCTTAAGTTTGAGTATTAACCACCTGGTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 90 bp CCTCTTCCTCTGTGGAGTTCCTGCCGTGCAATGGGGGTCAGAAACTaGGTTTTAGATCTATGTTGGGCAGTCTTCTGTCCTCTTTCAAAT +
Preference number: 1 (lower is better)
Translates to: PLPLWSSCRAMGVRN*VLDLCWAVFCPLSN
Trigger: ATTTGAAAGAGGACAGAAGACTGCCCAACATAGATCTAAAACCCAGTTTCTGACCCCCATTGCACGGCAGGAACTCCACAGAGGAAGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 90 bp AGAACTGGCTGCAGGTGCTCACCAAACATGGCTGGTGTCATGATATaGATCAGTCCATATCAAGGTACACTCTCCAAAGTGCTTAGCACC +
Preference number: 1 (lower is better)
Translates to: RTGCRCSPNMAGVMI*ISPYQGTLSKVLST
Trigger: GGTGCTAAGCACTTTGGAGAGTGTACCTTGATATGGACTGATCCATATCATGACACCAGCCATGTTTGGTGAGCACCTGCAGCCAGTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 90 bp AGAAGGCCCACTCTGTGGCTTACAATACATCAGACTTCAATGGGATaGGAGCCACAGGCCCCCAAGTTTCTATTCTTTGGTACAGGTTTT +
Preference number: 1 (lower is better)
Translates to: RRPTLWLTIHQTSMG*EPQAPKFLFFGTGF
Trigger: AAAACCTGTACCAAAGAATAGAAACTTGGGGGCCTGTGGCTCCCATCCCATTGAAGTCTGATGTATTGTAAGCCACAGAGTGGGCCTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR TCA 90 bp TTATTCAAGGTCAAACGTTTGTCTAAGAAATCAATCCTGCATCCCTaGACATCCCTGCATCTAGAGAGGGTCTCCCACATCCACACCCTC +
Preference number: 1 (lower is better)
Translates to: LFKVKRLSKKSILHP*TSLHLERVSHIHTL
Trigger: GAGGGTGTGGATGTGGGAGACCCTCTCTAGATGCAGGGATGTTCAGGGATGCAGGATTGATTTCTTAGACAAACGTTTGACCTTGAATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR TCA 90 bp GGGAAAGCCAGACTGGCTGAGAACTACTTGGGTGAACGACGACACTaGCCAGACAGCTCTTATTCAAGGTCAAACGTTTGTCTAAGAAAT +
Preference number: 1 (lower is better)
Translates to: GKARLAENYLGERRH*PDSSYSRSNVCLRN
Trigger: ATTTCTTAGACAAACGTTTGACCTTGAATAAGAGCTGTCTGGTCAGTGTCGTCGTTCACCCAAGTAGTTCTCAGCCAGTCTGGCTTTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR TCA 90 bp GTGACGGGAGATTCTGCTGGGCACAGACAGCTTCAAATACAATCATaGAGTCAGAGACTCTCATTCCCTTCAAATACCTCATGCTTCCCA +
Preference number: 1 (lower is better)
Translates to: VTGDSAGHRQLQIQS*SQRLSFPSNTSCFP
Trigger: TGGGAAGCATGAGGTATTTGAAGGGAATGAGAGTCTCTGACTTCATGATTGTATTTGAAGCTGTCTGTGCCCAGCAGAATCTCCCGTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 90 bp CCCACACTGGTCTATCCATGTACTGATCAAGACCCAACCACAAGATaGGAACCTGGGCCGAGTTATCAGATCCTAAGTAAAATGTCAAGT +
Preference number: 1 (lower is better)
Translates to: PTLVYPCTDQDPTTR*EPGPSYQILSKMSS
Trigger: ACTTGACATTTTACTTAGGATCTGATAACTCGGCCCAGGTTCCCATCTTGTGGTTGGGTCTTGATCAGTACATGGATAGACCAGTGTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 90 bp AACCAAGATAAGGAGTTACCTGCCAGCCATAACGGAGTACAGGTTTaGAGACTTCTCATGAACAAAAGTGATAGATTGGTGATGACCTTC +
Preference number: 1 (lower is better)
Translates to: NQDKELPASHNGVQV*RLLMNKSDRLVMTF
Trigger: GAAGGTCATCACCAATCTATCACTTTTGTTCATGAGAAGTCTCCAAACCTGTACTCCGTTATGGCTGGCAGGTAACTCCTTATCTTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 90 bp GCTGCTTCAAGCTTAAAAGACTTCCCAACTCAAATGATTAAGCTTTaGCTTAACTACACCGAGACACTCTGGACCATCCAAAGTGTCTTC +
Preference number: 1 (lower is better)
Translates to: AASSLKDFPTQMIKL*LNYTETLWTIQSVF
Trigger: GAAGACACTTTGGATGGTCCAGAGTGTCTCGGTGTAGTTAAGCCAAAGCTTAATCATTTGAGTTGGGAAGTCTTTTAAGCTTGAAGCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR GCA 90 bp AGCACAAGTAAACGCGTTGCTGCCAGGGGCGCCAACATTCAGCCAGTGTGCTCTGCTCCTGCCAGCTCCTaGCAGTTCCTGCCAGCCCCT +
Preference number: 2 (lower is better)
Translates to: STSKRVAARGANIQPVCSAPASS*QFLPAP
Trigger: AGGGGCTGGCAGGAACTGGCAGGAGCTGGCAGGAGC...AGAGCACACTGGCTGAATGTTGGCGCCCCTGGCAGCAACGCGTTTACTTGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR GCA 90 bp GACCATCCAAAGTGTCTTCATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTGCTCCTGCCAGTTCCTaGCAGCCCCTGCCACCTGAC +
Preference number: 2 (lower is better)
Translates to: DHPKCLHPGSLYGPTLSSAPASS*QPLPPD
Trigger: GTCAGGTGGCAGGGGCTGGCAGGAACTGGCAGGAGC...ACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGATGAAGACACTTTGGATGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR TCA 90 bp AGCACAAGTAAACGCGTTGCTGCCAGGGGCGCCAACATTCAGCCAGTGTGCTCTGGAGGGAAGAGGATGTaGGCCAAGAGGCTTGCCAGA +
Preference number: 2 (lower is better)
Translates to: STSKRVAARGANIQPVCSGGKRM*AKRLAR
Trigger: TCTGGCAAGCCTCTTGGCTCACATCCTCTTCCCTCC...AGAGCACACTGGCTGAATGTTGGCGCCCCTGGCAGCAACGCGTTTACTTGTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR TCA 90 bp GTGGAGTTCCTGCCGTGCAATGGGGGTCAGAAACTGGGTTTTAGATCTATGTTGGGTCCCCCGCCCTCCTaGACAGTCCCTGATGTGGGG +
Preference number: 2 (lower is better)
Translates to: VEFLPCNGGQKLGFRSMLGPPPS*TVPDVG
Trigger: CCCCACATCAGGGACTGTTCAGGAGGGCGGGGGACC...CAACATAGATCTAAAACCCAGTTTCTGACCCCCATTGCACGGCAGGAACTCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR TCA 90 bp ATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTTCTGTTTAGGGTACCCTTGCCAAGGGTTAGGGAGTaGGGTGCTCCCACCAGTCAG +
Preference number: 2 (lower is better)
Translates to: IPAASMAQHCPVLFRVPLPRVRE*GAPTSQ
Trigger: CTGACTGGTGGGAGCACCTCACTCCCTAACCCTTGG...CAAGGGTACCCTAAACAGAACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp CTACCGCTGTCTGCGGAACAGGATTTGTGGCAGGGAAAGCCAGACTGGCTGAGACAGACTTCAATGGGATaGGAGCCACAGGCCCCCAAG +
Preference number: 2 (lower is better)
Translates to: LPLSAEQDLWQGKPDWLRQTSMG*EPQAPK
Trigger: CTTGGGGGCCTGTGGCTCCCATCCCATTGAAGTCTG...TCTCAGCCAGTCTGGCTTTCCCTGCCACAAATCCTGTTCCGCAGACAGCGGTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CAA 90 bp TACAAAATGCATGCACCCCACCATATGCTTCCAGTGCCCTCAAGGTaGCAGGACCGCTGTCCTGTGCCTCCTAGGCCTTCAGGAGGGAAG +
Preference number: 2 (lower is better)
Translates to: YKMHAPHHMLPVPSR*QDRCPVPPRPSGGK
Trigger: CTTCCCTCCTGAAGGCCTAGGAGGCACAGGACAGCGGTCCTGCAACCTTGAGGGCACTGGAAGCATATGGTGGGGTGCATGCATTTTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR TCA 90 bp AGCACAAGTAAACGCGTTGCTGCCAGGGGCGCCAACATTCAGCCAGTGTGCTCTACCCTGGTCCACATCTaGAAAGCCCCTCTCTCTCTG +
Preference number: 2 (lower is better)
Translates to: STSKRVAARGANIQPVCSTLVHI*KAPLSL
Trigger: CAGAGAGAGAGGGGCTTTTCAGATGTGGACCAGGGT...AGAGCACACTGGCTGAATGTTGGCGCCCCTGGCAGCAACGCGTTTACTTGTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR TCA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGGCCACAGGAGAGCTGTaGGGAGGAACACTGAACATG +
Preference number: 2 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLATGEL*GGTLNM
Trigger: CATGTTCAGTGTTCCTCCTCACAGCTCTCCTGTGGC...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR GCA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGGTGGAGTTCCTGCCGTaGAATGGGGGTCAGAAACTG +
Preference number: 2 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLVEFLP*NGGQKL
Trigger: CAGTTTCTGACCCCCATTGCACGGCAGGAACTCCAC...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp CTACCGCTGTCTGCGGAACAGGATTTGTGGCAGGGAAAGCCAGACTGGCTGAGAGTTCCTGCCGTGCAATaGGGGTCAGAAACTGGGTTT +
Preference number: 2 (lower is better)
Translates to: LPLSAEQDLWQGKPDWLRVPAVQ*GSETGF
Trigger: AAACCCAGTTTCTGACCCCCATTGCACGGCAGGAAC...TCTCAGCCAGTCTGGCTTTCCCTGCCACAAATCCTGTTCCGCAGACAGCGGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp AGCACAAGTAAACGCGTTGCTGCCAGGGGCGCCAACATTCAGCCAGTGTGCTCTGTCGTACCTCAGAACTaGCTGCAGGTGCTCACCAAA +
Preference number: 2 (lower is better)
Translates to: STSKRVAARGANIQPVCSVVPQN*LQVLTK
Trigger: TTTGGTGAGCACCTGCAGCCAGTTCTGAGGTACGAC...AGAGCACACTGGCTGAATGTTGGCGCCCCTGGCAGCAACGCGTTTACTTGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR TCA 90 bp ATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTTCTGTTTAGGGTACCCTTGCCAAAGCAATTCGACTaGGCCCTTATCCTGTCCCCA +
Preference number: 2 (lower is better)
Translates to: IPAASMAQHCPVLFRVPLPKQFD*ALILSP
Trigger: TGGGGACAGGATAAGGGCTCAGTCGAATTGCTTTGG...CAAGGGTACCCTAAACAGAACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR GCA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGGTGAGCCAAGAGGCTTaGCAGAGAGGGAAATGCAAA +
Preference number: 2 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLVSQEA*QRGKCK
Trigger: TTTGCATTTCCCTCTCTGGCAAGCCTCTTGGCTCAC...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR TCA 90 bp AGCACAAGTAAACGCGTTGCTGCCAGGGGCGCCAACATTCAGCCAGTGTGCTCTAAGCAAAGATGGCTTTaGAACACAAACATGCACGCG +
Preference number: 2 (lower is better)
Translates to: STSKRVAARGANIQPVCSKQRWL*NTNMHA
Trigger: CGCGTGCATGTTTGTGTTTCAAAGCCATCTTTGCTT...AGAGCACACTGGCTGAATGTTGGCGCCCCTGGCAGCAACGCGTTTACTTGTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp CTACCGCTGTCTGCGGAACAGGATTTGTGGCAGGGAAAGCCAGACTGGCTGAGAAGAAGGCCCACTCTGTaGCTTACAATACATCAGACT +
Preference number: 2 (lower is better)
Translates to: LPLSAEQDLWQGKPDWLRRRPTL*LTIHQT
Trigger: AGTCTGATGTATTGTAAGCCACAGAGTGGGCCTTCT...TCTCAGCCAGTCTGGCTTTCCCTGCCACAAATCCTGTTCCGCAGACAGCGGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR TCA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGATCTTCTACATTCCCTaGACTTCCAAAGCAGGAAAA +
Preference number: 2 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLIFYIP*TSKAGK
Trigger: TTTTCCTGCTTTGGAAGTTCAGGGAATGTAGAAGAT...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR GCA 90 bp TGTAACTGTACACACATGATAGCATCATTTTCATACAGCCCCAGACTGTCAGAAAGGACCGCTGTCCTGTaGCTCCTAGGCCTTCAGGAG +
Preference number: 2 (lower is better)
Translates to: CNCTHMIASFSYSPRLSERTAVL*LLGLQE
Trigger: CTCCTGAAGGCCTAGGAGGCACAGGACAGCGGTCCT...TTCTGACAGTCTGGGGCTGTATGAAAATGATGCTATCATGTGTGTACAGTTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CAA 90 bp TTCCTGCCGTGCAATGGGGGTCAGAAACTGGGTTTTAGATCTATGTaGGGCAGTCTTCTGTCCTCTTTCAAATCTGGTCTGAGCTCAGTA +
Preference number: 2 (lower is better)
Translates to: FLPCNGGQKLGFRSM*GSLLSSFKSGLSSV
Trigger: TACTGAGCTCAGACCAGATTTGAAAGAGGACAGAAGACTGCCCAACATAGATCTAAAACCCAGTTTCTGACCCCCATTGCACGGCAGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR TCA 90 bp GACCATCCAAAGTGTCTTCATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTAAAGTTCTCCAACTATaGTCACAATTCCTTAGAAGC +
Preference number: 2 (lower is better)
Translates to: DHPKCLHPGSLYGPTLSSKVLQL*SQFLRS
Trigger: GCTTCTAAGGAATTGTGATCATAGTTGGAGAACTTT...ACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGATGAAGACACTTTGGATGGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR TCA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGTTTGGAGACTTCTCATaGACAAAAGTGATAGATTGG +
Preference number: 2 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLFGDFS*TKVIDW
Trigger: CCAATCTATCACTTTTGTTCATGAGAAGTCTCCAAA...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp AGCACAAGTAAACGCGTTGCTGCCAGGGGCGCCAACATTCAGCCAGTGTGCTCTTTACTTAGTAGTTTTTaGGTTTCCTTGGCTCAATCT +
Preference number: 2 (lower is better)
Translates to: STSKRVAARGANIQPVCSLLSSF*VSLAQS
Trigger: AGATTGAGCCAAGGAAACCCAAAAACTACTAAGTAA...AGAGCACACTGGCTGAATGTTGGCGCCCCTGGCAGCAACGCGTTTACTTGTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp ATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTTCTGTTTAGGGTACCCTTGTCCTGTTGGGTGGTTTaGTTTGTAAATCCTTTACAT +
Preference number: 2 (lower is better)
Translates to: IPAASMAQHCPVLFRVPLSCWVV*FVNPLH
Trigger: ATGTAAAGGATTTACAAACCAAACCACCCAACAGGA...CAAGGGTACCCTAAACAGAACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp GCATTCACTTCTCTTAAACAAAAAGACCGAAGTGGGCCGTGTATTCTACAGTTATCCCGGCAGCCTCTATaGCCCAACACTGTCCAGTTC +
Preference number: 2 (lower is better)
Translates to: AFTSLKQKDRSGPCILQLSRQPL*PNTVQF
Trigger: GAACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGA...TAACTGTAGAATACACGGCCCACTTCGGTCTTTTTGTTTAAGAGAAGTGAATGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CAA 90 bp GCTTGTAACCCTCTTTCACATCCCGAGAAACATGGAGATCAGCAGTaGAAGCTACCTTCGGGATTCCTTGATTGTGTACTATTCTCCCTG +
Preference number: 2 (lower is better)
Translates to: ACNPLSHPEKHGDQQ*KLPSGFLDCVLFSL
Trigger: CAGGGAGAATAGTACACAATCAAGGAATCCCGAAGGTAGCTTCAACTGCTGATCTCCATGTTTCTCGGGATGTGAAAGAGGGTTACAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp TTCCTGAATCTCTTTCCTGTCGTACCTCAGAACTGGCTGCAGGTGCTCACCAAAGGGAAGAAATTTGCTTaGGATGTCTTGTGTCAAGTC +
Preference number: 2 (lower is better)
Translates to: FLNLFPVVPQNWLQVLTKGKKFA*DVLCQV
Trigger: GACTTGACACAAGACATCCCAAGCAAATTTCTTCCC...TTTGGTGAGCACCTGCAGCCAGTTCTGAGGTACGACAGGAAAGAGATTCAGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp GCATTCACTTCTCTTAAACAAAAAGACCGAAGTGGGCCGTGTATTCTACAGTTACGGGGTGAGGCCTCCTaGGTTGTCCTGTTCTACAAA +
Preference number: 2 (lower is better)
Translates to: AFTSLKQKDRSGPCILQLRGEAS*VVLFYK
Trigger: TTTGTAGAACAGGACAACCCAGGAGGCCTCACCCCG...TAACTGTAGAATACACGGCCCACTTCGGTCTTTTTGTTTAAGAGAAGTGAATGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp TGTAACTGTACACACATGATAGCATCATTTTCATACAGCCCCAGACTGTCAGAATACATCAGACTTCAATaGGATGGGAGCCACAGGCCC +
Preference number: 2 (lower is better)
Translates to: CNCTHMIASFSYSPRLSEYIRLQ*DGSHRP
Trigger: GGGCCTGTGGCTCCCATCCCATTGAAGTCTGATGTA...TTCTGACAGTCTGGGGCTGTATGAAAATGATGCTATCATGTGTGTACAGTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp TCAAATACAATCATGAAGTCAGAGACTCTCATTCCCTTCAAATACCTCATGCTTCCGCCTCTTCCTCTGTaGAGTTCCTGCCGTGCAATG +
Preference number: 2 (lower is better)
Translates to: SNTIMKSETLIPFKYLMLPPLPL*SSCRAM
Trigger: CATTGCACGGCAGGAACTCCACAGAGGAAGAGGCGG...AAGCATGAGGTATTTGAAGGGAATGAGAGTCTCTGACTTCATGATTGTATTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp GCATTCACTTCTCTTAAACAAAAAGACCGAAGTGGGCCGTGTATTCTACAGTTACAGGGAAAGCCAGACTaGCTGAGAACTACTTGGGTG +
Preference number: 2 (lower is better)
Translates to: AFTSLKQKDRSGPCILQLQGKPD*LRTTWV
Trigger: CACCCAAGTAGTTCTCAGCCAGTCTGGCTTTCCCTG...TAACTGTAGAATACACGGCCCACTTCGGTCTTTTTGTTTAAGAGAAGTGAATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR GCA 90 bp GCATTCACTTCTCTTAAACAAAAAGACCGAAGTGGGCCGTGTATTCTACAGTTAGTCAGTCAATATTCCTaGCACAGGAGAGCTGTGAGG +
Preference number: 2 (lower is better)
Translates to: AFTSLKQKDRSGPCILQLVSQYS*HRRAVR
Trigger: CCTCACAGCTCTCCTGTGGCAGGAATATTGACTGAC...TAACTGTAGAATACACGGCCCACTTCGGTCTTTTTGTTTAAGAGAAGTGAATGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR GCA 90 bp TCCTACACTTCCTGTTGGGTGGTTTGGTTTGTAAATCCTTTACATTCAAAGGCCCAGACACGTAACCTTTaGGAACACTTTCAACCTAGA +
Preference number: 2 (lower is better)
Translates to: SYTSCWVVWFVNPLHSKAQTRNL*EHFQPR
Trigger: TCTAGGTTGAAAGTGTTCGCAAAGGTTACGTGTCTG...GGCCTTTGAATGTAAAGGATTTACAAACCAAACCACCCAACAGGAAGTGTAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp GCATTCACTTCTCTTAAACAAAAAGACCGAAGTGGGCCGTGTATTCTACAGTTAACATCCCGAGAAACATaGAGATCAGCAGTTGAAGCT +
Preference number: 2 (lower is better)
Translates to: AFTSLKQKDRSGPCILQLTSRET*RSAVEA
Trigger: AGCTTCAACTGCTGATCTCCATGTTTCTCGGGATGT...TAACTGTAGAATACACGGCCCACTTCGGTCTTTTTGTTTAAGAGAAGTGAATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR TCA 90 bp AACTGGGAAGAAATTTGCTTGGGATGTCTTGTGTCAAGTCCAGCTTTTCTCCTCTACCAGATACAAAGATaGGACACCCGAAAATATGAA +
Preference number: 2 (lower is better)
Translates to: NWEEICLGCLVSSPAFLLYQIQR*DTRKYE
Trigger: TTCATATTTTCGGGTGTCTCATCTTTGTATCTGGTA...GAGGAGAAAAGCTGGACTTGACACAAGACATCCCAAGCAAATTTCTTCCCAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp CAAAAGTTCTCCAACTATGATCACAATTCCTTAGAAGCCAGCCCTTACACTGATATGGGGGTCAGAAACTaGGTTTTAGATCTATGTTGG +
Preference number: 2 (lower is better)
Translates to: QKFSNYDHNSLEASPYTDMGVRN*VLDLCW
Trigger: CCAACATAGATCTAAAACCCAGTTTCTGACCCCCAT...ATCAGTGTAAGGGCTGGCTTCTAAGGAATTGTGATCATAGTTGGAGAACTTTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp TCAAATACAATCATGAAGTCAGAGACTCTCATTCCCTTCAAATACCTCATGCTTTACACCGAGACACTCTaGACCATCCAAAGTGTCTTC +
Preference number: 2 (lower is better)
Translates to: SNTIMKSETLIPFKYLMLYTETL*TIQSVF
Trigger: GAAGACACTTTGGATGGTCCAGAGTGTCTCGGTGTA...AAGCATGAGGTATTTGAAGGGAATGAGAGTCTCTGACTTCATGATTGTATTTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp TCAAATACAATCATGAAGTCAGAGACTCTCATTCCCTTCAAATACCTCATGCTTCCACACCCTCCCCACTaGATTAATACTAGCCCTTTT +
Preference number: 2 (lower is better)
Translates to: SNTIMKSETLIPFKYLMLPHPPH*INTSPF
Trigger: AAAAGGGCTAGTATTAATCCAGTGGGGAGGGTGTGG...AAGCATGAGGTATTTGAAGGGAATGAGAGTCTCTGACTTCATGATTGTATTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR TCA 90 bp CAAAAGTTCTCCAACTATGATCACAATTCCTTAGAAGCCAGCCCTTACACTGATATCACCCCGAAATCCTaGAATTCAAGTCATGTGAAT +
Preference number: 2 (lower is better)
Translates to: QKFSNYDHNSLEASPYTDITPKS*NSSHVN
Trigger: ATTCACATGACTTGAATTTCAGGATTTCGGGGTGAT...ATCAGTGTAAGGGCTGGCTTCTAAGGAATTGTGATCATAGTTGGAGAACTTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR TCA 90 bp GCATTCACTTCTCTTAAACAAAAAGACCGAAGTGGGCCGTGTATTCTACAGTTAAAAACGGCTTTCTCTTaGAGAGAAGAGAGACCTAAA +
Preference number: 2 (lower is better)
Translates to: AFTSLKQKDRSGPCILQLKTAFS*REERPK
Trigger: TTTAGGTCTCTCTTCTCTTCAAGAGAAAGCCGTTTT...TAACTGTAGAATACACGGCCCACTTCGGTCTTTTTGTTTAAGAGAAGTGAATGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR GCA 90 bp GCATTCACTTCTCTTAAACAAAAAGACCGAAGTGGGCCGTGTATTCTACAGTTAAACTGGGAAGAAATTTaGTTGGGATGTCTTGTGTCA +
Preference number: 2 (lower is better)
Translates to: AFTSLKQKDRSGPCILQLNWEEI*LGCLVS
Trigger: TGACACAAGACATCCCAAGCAAATTTCTTCCCAGTT...TAACTGTAGAATACACGGCCCACTTCGGTCTTTTTGTTTAAGAGAAGTGAATGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CCA 90 bp TGTAACTGTACACACATGATAGCATCATTTTCATACAGCCCCAGACTGTCAGAATCCTACACTTCCTGTTaGGTGGTTTGGTTTGTAAAT +
Preference number: 2 (lower is better)
Translates to: CNCTHMIASFSYSPRLSESYTSC*VVWFVN
Trigger: ATTTACAAACCAAACCACCCAACAGGAAGTGTAGGA...TTCTGACAGTCTGGGGCTGTATGAAAATGATGCTATCATGTGTGTACAGTTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CAA 90 bp AATCGGCTTTCCCCAGCCACAATTAAAATCAGGTTTCTGAGAAGGTaGTCAAGATTCATTTGTTCAATTAGTGTCATTAAGAATGTAAAG +
Preference number: 2 (lower is better)
Translates to: NRLSPATIKIRFLRR*SRFICSISVIKNVK
Trigger: CTTTACATTCTTAATGACACTAATTGAACAAATGAATCTTGACAACCTTCTCAGAAACCTGATTTTAATTGTGGCTGGGGAAAGCCGATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR TCA 72 bp GCCAGCTCCTGCCAGTTCCTGCCAGCCCCTGCCACCTaGCCAGGGACCGCTACCCGTCAGTCGCTCACCGCA +
Preference number: 3 (lower is better)
Translates to: ASSCQFLPAPAT*PGTATRQSLTA
Trigger: TGCGGTGAGCGACTGACGGGTAGCGGTCCCTGGTCAGGTGGCAGGGGCTGGCAGGAACTGGCAGGAGCTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR GCA 72 bp ATGCACCCCACCATATGCTTCCAGTGCCCTCAAGGTTaGAGGACCGCTGTCCTGTGCCTCCTAGGCCTTCAG +
Preference number: 3 (lower is better)
Translates to: MHPTICFQCPQG*RTAVLCLLGLQ
Trigger: CTGAAGGCCTAGGAGGCACAGGACAGCGGTCCTGCAACCTTGAGGGCACTGGAAGCATATGGTGGGGTGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 72 bp CGCTTAGCTCACAGGAGGTTTGGAACGCTCTTCCACTaGCTCTTCACCCGCTCTCGTTGCCCGTCATGCCTG +
Preference number: 3 (lower is better)
Translates to: RLAHRRFGTLFH*LFTRSRCPSCL
Trigger: CAGGCATGACGGGCAACGAGAGCGGGTGAAGAGCCAGTGGAAGAGCGTTCCAAACCTCCTGTGAGCTAAGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR GCA 72 bp CTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGTCTaGGGAACAGGATTTGTGGCAGGGAAAGCCAGACTG +
Preference number: 3 (lower is better)
Translates to: LHPVREAAPTAV*GTGFVAGKARL
Trigger: CAGTCTGGCTTTCCCTGCCACAAATCCTGTTCCGCAGACAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR TCA 72 bp CACACAGGCAAACTGAGCATCCCAAAGCAATTCGACTaGGCCCTTATCCTGTCCCCACCGCCTCTTCCTCTG +
Preference number: 3 (lower is better)
Translates to: HTGKLSIPKQFD*ALILSPPPLPL
Trigger: CAGAGGAAGAGGCGGTGGGGACAGGATAAGGGCTCAGTCGAATTGCTTTGGGATGCTCAGTTTGCCTGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR GCA 72 bp TCTACAAAATGCATGCACCCCACCATATGCTTCCAGTaGCCTCAAGGTTGCAGGACCGCTGTCCTGTGCCTC +
Preference number: 3 (lower is better)
Translates to: STKCMHPTICFQ*PQGCRTAVLCL
Trigger: GAGGCACAGGACAGCGGTCCTGCAACCTTGAGGGCACTGGAAGCATATGGTGGGGTGCATGCATTTTGTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR TCA 72 bp GGTTTAGGGGGAAATCCCCTTAGCCACCCAGTGCCGTaGCAAGCTCCGAGAAATGCCACCACAATCCCAAAA +
Preference number: 3 (lower is better)
Translates to: GLGGNPLSHPVP*QAPRNATTIPK
Trigger: TTTTGGGATTGTGGTGGCATTTCTCGGAGCTTGTCACGGCACTGGGTGGCTAAGGGGATTTCCCCCTAAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR GCA 72 bp GGGGGAGGAACGGGGCTTTGTGTTAACCTTGAGGTCTaGCTCCACTCAGACTTAGGGAAGGTTCCTGAGAAA +
Preference number: 3 (lower is better)
Translates to: GGGTGLCVNLEV*LHSDLGKVPEK
Trigger: TTTCTCAGGAACCTTCCCTAAGTCTGAGTGGAGGCAGACCTCAAGGTTAACACAAAGCCCCGTTCCTCCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CAA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGCATGGAGATCAGCAGTaGAAGCTACCTTCGGGATTC +
Preference number: 3 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLHGDQQ*KLPSGF
Trigger: GAATCCCGAAGGTAGCTTCAACTGCTGATCTCCATG...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR GCA 72 bp TTGGCTCAATCTACAAAATGCATGCACCCCACCATATaGTTCCAGTGCCCTCAAGGTTGCAGGACCGCTGTC +
Preference number: 3 (lower is better)
Translates to: LAQSTKCMHPTI*FQCPQGCRTAV
Trigger: GACAGCGGTCCTGCAACCTTGAGGGCACTGGAAGCATATGGTGGGGTGCATGCATTTTGTAGATTGAGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CAA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGCAAGCAAAGATGGCTTaGAAACACAAACATGCACGC +
Preference number: 3 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLQAKMA*KHKHAR
Trigger: GCGTGCATGTTTGTGTTTCAAAGCCATCTTTGCTTG...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR TCA 72 bp AGCACCCGCCGCCACACTCAGATCACCCCGAAATCCTaGAATTCAAGTCATGTGAATGTGAAGGAACGTCGT +
Preference number: 3 (lower is better)
Translates to: STRRHTQITPKS*NSSHVNVKERR
Trigger: ACGACGTTCCTTCACATTCACATGACTTGAATTTCAGGATTTCGGGGTGATCTGAGTGTGGCGGCGGGTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 72 bp GGCCCACTCTGTGGCTTACAATACATCAGACTTCAATaGGATGGGAGCCACAGGCCCCCAAGTTTCTATTCT +
Preference number: 3 (lower is better)
Translates to: GPLCGLQYIRLQ*DGSHRPPSFYS
Trigger: AGAATAGAAACTTGGGGGCCTGTGGCTCCCATCCCATTGAAGTCTGATGTATTGTAAGCCACAGAGTGGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 72 bp CTGTGGAGTTCCTGCCGTGCAATGGGGGTCAGAAACTaGGTTTTAGATCTATGTTGGGCAGTCTTCTGTCCT +
Preference number: 3 (lower is better)
Translates to: LWSSCRAMGVRN*VLDLCWAVFCP
Trigger: AGGACAGAAGACTGCCCAACATAGATCTAAAACCCAGTTTCTGACCCCCATTGCACGGCAGGAACTCCACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 72 bp TCCTTCCTGAATCTCTTTCCTGTCGTACCTCAGAACTaGCTGCAGGTGCTCACCAAACATGGCTGGTGTCAT +
Preference number: 3 (lower is better)
Translates to: SFLNLFPVVPQN*LQVLTKHGWCH
Trigger: ATGACACCAGCCATGTTTGGTGAGCACCTGCAGCCAGTTCTGAGGTACGACAGGAAAGAGATTCAGGAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 72 bp GATGCGCTCTCTCATCCAGGTAGACCAGAAGGTTACTaGGGAGGGACAAACAGGGAGAAAGTTAACAGTCCT +
Preference number: 3 (lower is better)
Translates to: DALSHPGRPEGY*GGTNREKVNSP
Trigger: AGGACTGTTAACTTTCTCCCTGTTTGTCCCTCCCCAGTAACCTTCTGGTCTACCTGGATGAGAGAGCGCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CAA 90 bp ATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTTCTGTTTAGGGTACCCTTGAAACTGGGAAGAAATTaGCTTGGGATGTCTTGTGTC +
Preference number: 3 (lower is better)
Translates to: IPAASMAQHCPVLFRVPLKLGRN*LGMSCV
Trigger: GACACAAGACATCCCAAGCAAATTTCTTCCCAGTTT...CAAGGGTACCCTAAACAGAACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CAA 90 bp ATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTTCTGTTTAGGGTACCCTTGGACTTCAATTTAGCATaGAAAATCGGCTTTCCCCAG +
Preference number: 3 (lower is better)
Translates to: IPAASMAQHCPVLFRVPLDFNLA*KIGFPQ
Trigger: CTGGGGAAAGCCGATTTTCAATGCTAAATTGAAGTC...CAAGGGTACCCTAAACAGAACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR TCA 72 bp TTCCTGAGAAACAGACCTGAGCCAAGGGTTAGGGAGTaGGGTGCTCCCACCAGTCAGACAATCTTCTACATT +
Preference number: 3 (lower is better)
Translates to: FLRNRPEPRVRE*GAPTSQTIFYI
Trigger: AATGTAGAAGATTGTCTGACTGGTGGGAGCACCTCACTCCCTAACCCTTGGCTCAGGTCTGTTTCTCAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR GCA 72 bp TATGGATCAGTCCATATCAAGGTACACTCTCCAAAGTaGTTAGCACCAATTCCCCCACCGGCTAGGAGTCCA +
Preference number: 3 (lower is better)
Translates to: YGSVHIKVHSPK*LAPIPPPARSP
Trigger: TGGACTCCTAGCCGGTGGGGGAATTGGTGCTAAGCACTTTGGAGAGTGTACCTTGATATGGACTGATCCATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 72 bp TCAGTAGTGAGAATACAGAGAACCAGAGAACCGGGATaGGCCCTCATTCTCAGAGGTGAATGTCAAGAAGGC +
Preference number: 3 (lower is better)
Translates to: SVVRIQRTREPG*ALILRGECQEG
Trigger: GCCTTCTTGACATTCACCTCTGAGAATGAGGGCCCATCCCGGTTCTCTGGTTCTCTGTATTCTCACTACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 72 bp CCTCAGAACTGGCTGCAGGTGCTCACCAAACATGGCTaGTGTCATGATATGGATCAGTCCATATCAAGGTAC +
Preference number: 3 (lower is better)
Translates to: PQNWLQVLTKHG*CHDMDQSISRY
Trigger: GTACCTTGATATGGACTGATCCATATCATGACACCAGCCATGTTTGGTGAGCACCTGCAGCCAGTTCTGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 72 bp ATGATTAAGCTTTGGCTTAACTACACCGAGACACTCTaGACCATCCAAAGTGTCTTCATCCCGGCAGCCTCT +
Preference number: 3 (lower is better)
Translates to: MIKLWLNYTETL*TIQSVFIPAAS
Trigger: AGAGGCTGCCGGGATGAAGACACTTTGGATGGTCCAGAGTGTCTCGGTGTAGTTAAGCCAAAGCTTAATCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CAA 90 bp TTCCTGAATCTCTTTCCTGTCGTACCTCAGAACTGGCTGCAGGTGCTCACCAAATTTGCTTGGGATGTCTaGTGTCAAGTCCAGCTTTTC +
Preference number: 3 (lower is better)
Translates to: FLNLFPVVPQNWLQVLTKFAWDV*CQVQLF
Trigger: GAAAAGCTGGACTTGACACAAGACATCCCAAGCAAA...TTTGGTGAGCACCTGCAGCCAGTTCTGAGGTACGACAGGAAAGAGATTCAGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR TCA 72 bp AGACTGGCTGAGAACTACTTGGGTGAACGACGACACTaGCCAGACAGCTCTTATTCAAGGTCAAACGTTTGT +
Preference number: 3 (lower is better)
Translates to: RLAENYLGERRH*PDSSYSRSNVC
Trigger: ACAAACGTTTGACCTTGAATAAGAGCTGTCTGGTCAGTGTCGTCGTTCACCCAAGTAGTTCTCAGCCAGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 72 bp ACTCTGTGGCTTACAATACATCAGACTTCAATGGGATaGGAGCCACAGGCCCCCAAGTTTCTATTCTTTGGT +
Preference number: 3 (lower is better)
Translates to: TLWLTIHQTSMG*EPQAPKFLFFG
Trigger: ACCAAAGAATAGAAACTTGGGGGCCTGTGGCTCCCATCCCATTGAAGTCTGATGTATTGTAAGCCACAGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 72 bp TGCAGGTGCTCACCAAACATGGCTGGTGTCATGATATaGATCAGTCCATATCAAGGTACACTCTCCAAAGTG +
Preference number: 3 (lower is better)
Translates to: CRCSPNMAGVMI*ISPYQGTLSKV
Trigger: CACTTTGGAGAGTGTACCTTGATATGGACTGATCCATATCATGACACCAGCCATGTTTGGTGAGCACCTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 72 bp GTCTATCCATGTACTGATCAAGACCCAACCACAAGATaGGAACCTGGGCCGAGTTATCAGATCCTAAGTAAA +
Preference number: 3 (lower is better)
Translates to: VYPCTDQDPTTR*EPGPSYQILSK
Trigger: TTTACTTAGGATCTGATAACTCGGCCCAGGTTCCCATCTTGTGGTTGGGTCTTGATCAGTACATGGATAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CAA 90 bp CAAAAGTTCTCCAACTATGATCACAATTCCTTAGAAGCCAGCCCTTACACTGATATCAAAGCTATCCCTTaGCCTACCACACCCTCACAC +
Preference number: 3 (lower is better)
Translates to: QKFSNYDHNSLEASPYTDIKAIP*PTTPSH
Trigger: GTGTGAGGGTGTGGTAGGCAAAGGGATAGCTTTGAT...ATCAGTGTAAGGGCTGGCTTCTAAGGAATTGTGATCATAGTTGGAGAACTTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR TCA 72 bp CTCTTTCACATCCCGAGAAACATGGAGATCAGCAGTTaGAGCTACCTTCGGGATTCCTTGATTGTGTACTAT +
Preference number: 3 (lower is better)
Translates to: LFHIPRNMEISS*SYLRDSLIVYY
Trigger: ATAGTACACAATCAAGGAATCCCGAAGGTAGCTTCAACTGCTGATCTCCATGTTTCTCGGGATGTGAAAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CCA 72 bp AAGGAGTTACCTGCCAGCCATAACGGAGTACAGGTTTaGAGACTTCTCATGAACAAAAGTGATAGATTGGTG +
Preference number: 3 (lower is better)
Translates to: KELPASHNGVQV*RLLMNKSDRLV
Trigger: CACCAATCTATCACTTTTGTTCATGAGAAGTCTCCAAACCTGTACTCCGTTATGGCTGGCAGGTAACTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR TCA 72 bp TCCCACACACCCACCCTTCTTTACCAGATACAAAGATaGGACACCCGAAAATATGAATGGTCTGCTTTTCTA +
Preference number: 3 (lower is better)
Translates to: SHTPTLLYQIQR*DTRKYEWSAFL
Trigger: TAGAAAAGCAGACCATTCATATTTTCGGGTGTCTCATCTTTGTATCTGGTAAAGAAGGGTGGGTGTGTGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR TCA 72 bp CACGTAACCTTTGCGAACACTTTCAACCTAGAGTCCTaGGCTAAATCGAGTTTCTTAGCAAACTGGGAAGAA +
Preference number: 3 (lower is better)
Translates to: HVTFANTFNLES*AKSSFLANWEE
Trigger: TTCTTCCCAGTTTGCTAAGAAACTCGATTTAGCTCAGGACTCTAGGTTGAAAGTGTTCGCAAAGGTTACGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR GCA 72 bp GCTAAATCGAGTTTCTTAGCAAACTGGGAAGAAATTTaGTTGGGATGTCTTGTGTCAAGTCCAGCTTTTCTC +
Preference number: 3 (lower is better)
Translates to: AKSSFLANWEEI*LGCLVSSPAFL
Trigger: GAGAAAAGCTGGACTTGACACAAGACATCCCAAGCAAATTTCTTCCCAGTTTGCTAAGAAACTCGATTTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CAA 90 bp GCATTCACTTCTCTTAAACAAAAAGACCGAAGTGGGCCGTGTATTCTACAGTTAAGTTTTTGGGTTTCCTaGGCTCAATCTACAAAATGC +
Preference number: 3 (lower is better)
Translates to: AFTSLKQKDRSGPCILQLSFWVS*AQSTKC
Trigger: GCATTTTGTAGATTGAGCCAAGGAAACCCAAAAACT...TAACTGTAGAATACACGGCCCACTTCGGTCTTTTTGTTTAAGAGAAGTGAATGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CAA 90 bp TCAAATACAATCATGAAGTCAGAGACTCTCATTCCCTTCAAATACCTCATGCTTTGGGAAGAAATTTGCTaGGGATGTCTTGTGTCAAGT +
Preference number: 3 (lower is better)
Translates to: SNTIMKSETLIPFKYLMLWEEIC*GCLVSS
Trigger: ACTTGACACAAGACATCCCAAGCAAATTTCTTCCCA...AAGCATGAGGTATTTGAAGGGAATGAGAGTCTCTGACTTCATGATTGTATTTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CAA 90 bp TCAAATACAATCATGAAGTCAGAGACTCTCATTCCCTTCAAATACCTCATGCTTTTCCTGTTGGGTGGTTaGGTTTGTAAATCCTTTACA +
Preference number: 3 (lower is better)
Translates to: SNTIMKSETLIPFKYLMLFLLGG*VCKSFT
Trigger: TGTAAAGGATTTACAAACCAAACCACCCAACAGGAA...AAGCATGAGGTATTTGAAGGGAATGAGAGTCTCTGACTTCATGATTGTATTTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR-3UTR CAA 90 bp TCAAATACAATCATGAAGTCAGAGACTCTCATTCCCTTCAAATACCTCATGCTTAGGTTTCTGAGAAGGTaGTCAAGATTCATTTGTTCA +
Preference number: 3 (lower is better)
Translates to: SNTIMKSETLIPFKYLMLRFLRR*SRFICS
Trigger: TGAACAAATGAATCTTGACAACCTTCTCAGAAACCT...AAGCATGAGGTATTTGAAGGGAATGAGAGTCTCTGACTTCATGATTGTATTTGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGCCTCGTCGCAGGAGCTaGAGCCGTGCGGCCGGCGCA +
Preference number: 4 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLPRRRS*SRAAGA
Trigger: TGCGCCGGCCGCACGGCTGCAGCTCCTGCGACGAGG...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGCAGGAGCTGCAGCCGTaGGGCCGGCGCATCAGCAGC +
Preference number: 4 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLQELQP*GRRISS
Trigger: GCTGCTGATGCGCCGGCCGCACGGCTGCAGCTCCTG...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR TCA 90 bp AGCACAAGTAAACGCGTTGCTGCCAGGGGCGCCAACATTCAGCCAGTGTGCTCTGGCCTCGGATGGTCTTaGGCTCCTGCACCTGGGCCA +
Preference number: 4 (lower is better)
Translates to: STSKRVAARGANIQPVCSGLGWS*APAPGP
Trigger: TGGCCCAGGTGCAGGAGCTCAAGACCATCCGAGGCC...AGAGCACACTGGCTGAATGTTGGCGCCCCTGGCAGCAACGCGTTTACTTGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGGGGTGGTGCGCATGGTaGCGGTGGTTGCTGTGGCCG +
Preference number: 4 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLGWCAW*RWLLWP
Trigger: CGGCCACAGCAACCACCGGCACCATGCGCACCACCC...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp GACCATCCAAAGTGTCTTCATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTCAGGAAGGCGGAGGATaGCAGCGCGTCCATGCCCGC +
Preference number: 4 (lower is better)
Translates to: DHPKCLHPGSLYGPTLSSQEGGG*QRVHAR
Trigger: GCGGGCATGGACGCGCTGCCATCCTCCGCCTTCCTG...ACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGATGAAGACACTTTGGATGGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp CTACCGCTGTCTGCGGAACAGGATTTGTGGCAGGGAAAGCCAGACTGGCTGAGAACCTCATCGTCGTGGTaGTGGCAGAAGCCGAGGCGC +
Preference number: 4 (lower is better)
Translates to: LPLSAEQDLWQGKPDWLRTSSSW*WQKPRR
Trigger: GCGCCTCGGCTTCTGCCAGCACCACGACGATGAGGT...TCTCAGCCAGTCTGGCTTTCCCTGCCACAAATCCTGTTCCGCAGACAGCGGTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp AGCACAAGTAAACGCGTTGCTGCCAGGGGCGCCAACATTCAGCCAGTGTGCTCTCAGCTGGATGGTGAGTaGCCGAGAGTCCTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: STSKRVAARGANIQPVCSQLDGE*PRVLQG
Trigger: GCCCTGCAGGACTCTCGGGCACTCACCATCCAGCTG...AGAGCACACTGGCTGAATGTTGGCGCCCCTGGCAGCAACGCGTTTACTTGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp ATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTTCTGTTTAGGGTACCCTTGAAGCTGTGGCCACCGTaGCGGCCCAGCGTGCACTCT +
Preference number: 4 (lower is better)
Translates to: IPAASMAQHCPVLFRVPLKLWPP*RPSVHS
Trigger: AGAGTGCACGCTGGGCCGCCACGGTGGCCACAGCTT...CAAGGGTACCCTAAACAGAACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp AGCACAAGTAAACGCGTTGCTGCCAGGGGCGCCAACATTCAGCCAGTGTGCTCTAGGTCACCTCCCGAATaGCGGGGCTCACCATCGTGG +
Preference number: 4 (lower is better)
Translates to: STSKRVAARGANIQPVCSRSPPE*RGSPSW
Trigger: CCACGATGGTGAGCCCCGCCATTCGGGAGGTGACCT...AGAGCACACTGGCTGAATGTTGGCGCCCCTGGCAGCAACGCGTTTACTTGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR TCA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGTGTAATGGTCCTTGGTaGGGCGGACGCGCTGGTGCG +
Preference number: 4 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLCNGPW*GGRAGA
Trigger: CGCACCAGCGCGTCCGCCTCACCAAGGACCATTACA...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp CTACCGCTGTCTGCGGAACAGGATTTGTGGCAGGGAAAGCCAGACTGGCTGAGACCAGCGTGCACTCTCTaGAGATGGGGACAGAGCAGG +
Preference number: 4 (lower is better)
Translates to: LPLSAEQDLWQGKPDWLRPACTL*RWGQSR
Trigger: CCTGCTCTGTCCCCATCTGCAGAGAGTGCACGCTGG...TCTCAGCCAGTCTGGCTTTCCCTGCCACAAATCCTGTTCCGCAGACAGCGGTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp AGCACAAGTAAACGCGTTGCTGCCAGGGGCGCCAACATTCAGCCAGTGTGCTCTTCTTCCAGGACCTGCTaGACGGCGCTGATGGTGCTC +
Preference number: 4 (lower is better)
Translates to: STSKRVAARGANIQPVCSSSRTC*TALMVL
Trigger: GAGCACCATCAGCGCCGTGCAGCAGGTCCTGGAAGA...AGAGCACACTGGCTGAATGTTGGCGCCCCTGGCAGCAACGCGTTTACTTGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp GACCATCCAAAGTGTCTTCATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTAGGGCCTGCAGAGCTTaGCCTCCCCGTCACCTTCAC +
Preference number: 4 (lower is better)
Translates to: DHPKCLHPGSLYGPTLSSRACRA*PPRHLH
Trigger: GTGAAGGTGACGGGGAGGGCAAGCTCTGCAGGCCCT...ACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGATGAAGACACTTTGGATGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp AGCACAAGTAAACGCGTTGCTGCCAGGGGCGCCAACATTCAGCCAGTGTGCTCTGAAAGCCACGCCCCGTaGAGAGTCGAAGTGCTTCCA +
Preference number: 4 (lower is better)
Translates to: STSKRVAARGANIQPVCSESHAP*RVEVLP
Trigger: TGGAAGCACTTCGACTCTCCACGGGGCGTGGCTTTC...AGAGCACACTGGCTGAATGTTGGCGCCCCTGGCAGCAACGCGTTTACTTGTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGCACAGCAGGCAGATCTaGAAGTCGGTCTCCGGGAAC +
Preference number: 4 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLHSRQI*KSVSGN
Trigger: GTTCCCGGAGACCGACTTCCAGATCTGCCTGCTGTG...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp GACCATCCAAAGTGTCTTCATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTCACAGCCACACCCTGTaGTCGCAGGAACTGCCCATT +
Preference number: 4 (lower is better)
Translates to: DHPKCLHPGSLYGPTLSSHSHTL*SQELPI
Trigger: AATGGGCAGTTCCTGCGACCACAGGGTGTGGCTGTG...ACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGATGAAGACACTTTGGATGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp TTCCTGAATCTCTTTCCTGTCGTACCTCAGAACTGGCTGCAGGTGCTCACCAAATGTGGTCGCAGGAACTaGCCATTGCCCGAGCCCTCC +
Preference number: 4 (lower is better)
Translates to: FLNLFPVVPQNWLQVLTKCGRRN*PLPEPS
Trigger: GGAGGGCTCGGGCAATGGGCAGTTCCTGCGACCACA...TTTGGTGAGCACCTGCAGCCAGTTCTGAGGTACGACAGGAAAGAGATTCAGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CAA 72 bp GAGAAGCAGCTCCTACCGCTGTCTGCGGAACAGGATTaGTGGCAGGGAAAGCCAGACTGGCTGAGAACTACT +
Preference number: 4 (lower is better)
Translates to: EKQLLPLSAEQD*WQGKPDWLRTT
Trigger: AGTAGTTCTCAGCCAGTCTGGCTTTCCCTGCCACAAATCCTGTTCCGCAGACAGCGGTAGGAGCTGCTTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR TCA 90 bp GACCATCCAAAGTGTCTTCATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTGATTGGCAATCAGGGTaGATAACCAGAAGCCGGTGG +
Preference number: 4 (lower is better)
Translates to: DHPKCLHPGSLYGPTLSSDWQSG*ITRSRW
Trigger: CCACCGGCTTCTGGTTATTCACCCTGATTGCCAATC...ACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGATGAAGACACTTTGGATGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp AACTGGGAAGAAATTTGCTTGGGATGTCTTGTGTCAAGTCCAGCTTTTCTCCTCAGAGCCTGGCGGCCCTaGTGGGCATCAGCCAGCAGC +
Preference number: 4 (lower is better)
Translates to: NWEEICLGCLVSSPAFLLRAWRP*WASASS
Trigger: GCTGCTGGCTGATGCCCAGCAGGGCCGCCAGGCTCT...GAGGAGAAAAGCTGGACTTGACACAAGACATCCCAAGCAAATTTCTTCCCAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp TTCCTGAATCTCTTTCCTGTCGTACCTCAGAACTGGCTGCAGGTGCTCACCAAAGCCACAGTCTGGGCCTaGTCGATGCTCAGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: FLNLFPVVPQNWLQVLTKATVWA*SMLSWR
Trigger: TCTCCAGCTGAGCATCGAGCAGGCCCAGACTGTGGC...TTTGGTGAGCACCTGCAGCCAGTTCTGAGGTACGACAGGAAAGAGATTCAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp CTACCGCTGTCTGCGGAACAGGATTTGTGGCAGGGAAAGCCAGACTGGCTGAGACTTGAGCACCAAACTTaGACAGGAAGCTGCCATTGG +
Preference number: 4 (lower is better)
Translates to: LPLSAEQDLWQGKPDWLRLEHQT*TGSCHW
Trigger: CCAATGGCAGCTTCCTGTGCAAGTTTGGTGCTCAAG...TCTCAGCCAGTCTGGCTTTCCCTGCCACAAATCCTGTTCCGCAGACAGCGGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp TCCTACACTTCCTGTTGGGTGGTTTGGTTTGTAAATCCTTTACATTCAAAGGCCTGCGCATGGTGCCGGTaGTTGCTGTGGCCGCCCGCG +
Preference number: 4 (lower is better)
Translates to: SYTSCWVVWFVNPLHSKACAWCR*LLWPPA
Trigger: CGCGGGCGGCCACAGCAACCACCGGCACCATGCGCA...GGCCTTTGAATGTAAAGGATTTACAAACCAAACCACCCAACAGGAAGTGTAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp AACTGGGAAGAAATTTGCTTGGGATGTCTTGTGTCAAGTCCAGCTTTTCTCCTCGCCGGGTGGTGCGCATaGTGCCGGTGGTTGCTGTGG +
Preference number: 4 (lower is better)
Translates to: NWEEICLGCLVSSPAFLLAGWCA*CRWLLW
Trigger: CCACAGCAACCACCGGCACCATGCGCACCACCCGGC...GAGGAGAAAAGCTGGACTTGACACAAGACATCCCAAGCAAATTTCTTCCCAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp GTGGAGTTCCTGCCGTGCAATGGGGGTCAGAAACTGGGTTTTAGATCTATGTTGAGGACCTCATCGTCGTaGTGCTGGCAGAAGCCGAGG +
Preference number: 4 (lower is better)
Translates to: VEFLPCNGGQKLGFRSMLRTSSS*CWQKPR
Trigger: CCTCGGCTTCTGCCAGCACCACGACGATGAGGTCCT...CAACATAGATCTAAAACCCAGTTTCTGACCCCCATTGCACGGCAGGAACTCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp GTGGAGTTCCTGCCGTGCAATGGGGGTCAGAAACTGGGTTTTAGATCTATGTTGGCATCAGCCAGCAGCTaGATGGTGAGTGCCCGAGAG +
Preference number: 4 (lower is better)
Translates to: VEFLPCNGGQKLGFRSMLASASS*MVSARE
Trigger: CTCTCGGGCACTCACCATCCAGCTGCTGGCTGATGC...CAACATAGATCTAAAACCCAGTTTCTGACCCCCATTGCACGGCAGGAACTCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp GACCATCCAAAGTGTCTTCATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTATGATTCTCCCTTCCTaGTCCACAGCCACACCCTGT +
Preference number: 4 (lower is better)
Translates to: DHPKCLHPGSLYGPTLSSMILPS*STATPC
Trigger: ACAGGGTGTGGCTGTGGACCAGGAAGGGAGAATCAT...ACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGATGAAGACACTTTGGATGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR TCA 90 bp AACTGGGAAGAAATTTGCTTGGGATGTCTTGTGTCAAGTCCAGCTTTTCTCCTCCCTGCTGCACGGCGCTaGTGGTGCTCTCCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: NWEEICLGCLVSSPAFLLPAARR*WCSPAC
Trigger: GCAAGCTGGAGAGCACCATCAGCGCCGTGCAGCAGG...GAGGAGAAAAGCTGGACTTGACACAAGACATCCCAAGCAAATTTCTTCCCAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp GTGGAGTTCCTGCCGTGCAATGGGGGTCAGAAACTGGGTTTTAGATCTATGTTGCGCAGCTTCTCCACCTaGAGGAACAGAGACTTCGCC +
Preference number: 4 (lower is better)
Translates to: VEFLPCNGGQKLGFRSMLRSFST*RNRDFA
Trigger: GGCGAAGTCTCTGTTCCTGCAGGTGGAGAAGCTGCG...CAACATAGATCTAAAACCCAGTTTCTGACCCCCATTGCACGGCAGGAACTCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp TTCCTGAATCTCTTTCCTGTCGTACCTCAGAACTGGCTGCAGGTGCTCACCAAAAGCCGCACATCTCCTTaGACAGCAGGCAGATCTGGA +
Preference number: 4 (lower is better)
Translates to: FLNLFPVVPQNWLQVLTKSRTSP*TAGRSG
Trigger: TCCAGATCTGCCTGCTGTGCAAGGAGATGTGCGGCT...TTTGGTGAGCACCTGCAGCCAGTTCTGAGGTACGACAGGAAAGAGATTCAGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp TCAAATACAATCATGAAGTCAGAGACTCTCATTCCCTTCAAATACCTCATGCTTCATGGTGCCGGTGGTTaGTGTGGCCGCCCGCGCCCC +
Preference number: 4 (lower is better)
Translates to: SNTIMKSETLIPFKYLMLHGAGG*CGRPRP
Trigger: GGGGCGCGGGCGGCCACAGCAACCACCGGCACCATG...AAGCATGAGGTATTTGAAGGGAATGAGAGTCTCTGACTTCATGATTGTATTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp ATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTTCTGTTTAGGGTACCCTTGACTTGCACAGGAAGCTaGCATTGGCCTCAAACATCT +
Preference number: 4 (lower is better)
Translates to: IPAASMAQHCPVLFRVPLTCTGS*HWPQTS
Trigger: AGATGTTTGAGGCCAATGGCAGCTTCCTGTGCAAGT...CAAGGGTACCCTAAACAGAACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp AACTGGGAAGAAATTTGCTTGGGATGTCTTGTGTCAAGTCCAGCTTTTCTCCTCTCATCGTCGTGGTGCTaGCAGAAGCCGAGGCGCTCC +
Preference number: 4 (lower is better)
Translates to: NWEEICLGCLVSSPAFLLSSSWC*QKPRRS
Trigger: GGAGCGCCTCGGCTTCTGCCAGCACCACGACGATGA...GAGGAGAAAAGCTGGACTTGACACAAGACATCCCAAGCAAATTTCTTCCCAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp ATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTTCTGTTTAGGGTACCCTTGATAACCAGAAGCCGGTaGTTGTTGAAGTCGGTGACT +
Preference number: 4 (lower is better)
Translates to: IPAASMAQHCPVLFRVPLITRSR*LLKSVT
Trigger: AGTCACCGACTTCAACAACCACCGGCTTCTGGTTAT...CAAGGGTACCCTAAACAGAACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp TCAAATACAATCATGAAGTCAGAGACTCTCATTCCCTTCAAATACCTCATGCTTATGGCAGCGCGTCCATaGCCGCCGCCTCGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: SNTIMKSETLIPFKYLMLMAARP*PPPRPG
Trigger: TCCTGGCCGAGGCGGCGGGCATGGACGCGCTGCCAT...AAGCATGAGGTATTTGAAGGGAATGAGAGTCTCTGACTTCATGATTGTATTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp CAAAAGTTCTCCAACTATGATCACAATTCCTTAGAAGCCAGCCCTTACACTGATCGTGGCGGCCCAGCGTaGACTCTCTGCAGATGGGGA +
Preference number: 4 (lower is better)
Translates to: QKFSNYDHNSLEASPYTDRGGPA*TLCRWG
Trigger: TCCCCATCTGCAGAGAGTGCACGCTGGGCCGCCACG...ATCAGTGTAAGGGCTGGCTTCTAAGGAATTGTGATCATAGTTGGAGAACTTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp GTGGAGTTCCTGCCGTGCAATGGGGGTCAGAAACTGGGTTTTAGATCTATGTTGACAGGAAGCTGCCATTaGCCTCAAACATCTGCACGC +
Preference number: 4 (lower is better)
Translates to: VEFLPCNGGQKLGFRSMLTGSCH*PQTSAR
Trigger: GCGTGCAGATGTTTGAGGCCAATGGCAGCTTCCTGT...CAACATAGATCTAAAACCCAGTTTCTGACCCCCATTGCACGGCAGGAACTCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR TCA 90 bp TGTAACTGTACACACATGATAGCATCATTTTCATACAGCCCCAGACTGTCAGAACGTCCAGCAGGTTGCTaGGCAGGAAGGCGGAGGATG +
Preference number: 4 (lower is better)
Translates to: CNCTHMIASFSYSPRLSERPAGC*AGRRRM
Trigger: CATCCTCCGCCTTCCTGCTCAGCAACCTGCTGGACG...TTCTGACAGTCTGGGGCTGTATGAAAATGATGCTATCATGTGTGTACAGTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR TCA 90 bp CAAAAGTTCTCCAACTATGATCACAATTCCTTAGAAGCCAGCCCTTACACTGATCCAGCAGCTGGATGGTaGGTGCCCGAGAGTCCTGCA +
Preference number: 4 (lower is better)
Translates to: QKFSNYDHNSLEASPYTDPAAGW*VPESPA
Trigger: TGCAGGACTCTCGGGCACTCACCATCCAGCTGCTGG...ATCAGTGTAAGGGCTGGCTTCTAAGGAATTGTGATCATAGTTGGAGAACTTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR TCA 90 bp TTAGCAAACTGGGAAGAAATTTGCTTGGGATGTCTTGTGTCAAGTCCAGCTTTTGAGGCCACCTTCCCCTaGAGGGCACGCTTGATGCCA +
Preference number: 4 (lower is better)
Translates to: LANWEEICLGCLVSSPAFEATFP*RARLMP
Trigger: TGGCATCAAGCGTGCCCTTCAGGGGAAGGTGGCCTC...AAAAGCTGGACTTGACACAAGACATCCCAAGCAAATTTCTTCCCAGTTTGCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp CAAAAGTTCTCCAACTATGATCACAATTCCTTAGAAGCCAGCCCTTACACTGATGCAGGAACTGCCCATTaGCCGAGCCCTCCGAACCCA +
Preference number: 4 (lower is better)
Translates to: QKFSNYDHNSLEASPYTDAGTAH*PSPPNP
Trigger: TGGGTTCGGAGGGCTCGGGCAATGGGCAGTTCCTGC...ATCAGTGTAAGGGCTGGCTTCTAAGGAATTGTGATCATAGTTGGAGAACTTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp AACTGGGAAGAAATTTGCTTGGGATGTCTTGTGTCAAGTCCAGCTTTTCTCCTCTGTTCTGCCACAGTCTaGGCCTGCTCGATGCTCAGC +
Preference number: 4 (lower is better)
Translates to: NWEEICLGCLVSSPAFLLCSATV*ACSMLS
Trigger: GCTGAGCATCGAGCAGGCCCAGACTGTGGCAGAACA...GAGGAGAAAAGCTGGACTTGACACAAGACATCCCAAGCAAATTTCTTCCCAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp CAAAAGTTCTCCAACTATGATCACAATTCCTTAGAAGCCAGCCCTTACACTGATATGCGGTCATCTTCTTaGGGCTGCAGGAGGCCTCGG +
Preference number: 4 (lower is better)
Translates to: QKFSNYDHNSLEASPYTDMRSSS*GCRRPR
Trigger: CCGAGGCCTCCTGCAGCCCCAAGAAGATGACCGCAT...ATCAGTGTAAGGGCTGGCTTCTAAGGAATTGTGATCATAGTTGGAGAACTTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR TCA 90 bp TTAGCAAACTGGGAAGAAATTTGCTTGGGATGTCTTGTGTCAAGTCCAGCTTTTCCGAAGCCACTCCCTTaGGCACCAAACTTGCACAGG +
Preference number: 4 (lower is better)
Translates to: LANWEEICLGCLVSSPAFPKPLP*APNLHR
Trigger: CCTGTGCAAGTTTGGTGCTCAAGGGAGTGGCTTCGG...AAAAGCTGGACTTGACACAAGACATCCCAAGCAAATTTCTTCCCAGTTTGCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp TCAAATACAATCATGAAGTCAGAGACTCTCATTCCCTTCAAATACCTCATGCTTTCGCACAGGTGTTCCTaGCAGTCGAGGCAGCGCGAC +
Preference number: 4 (lower is better)
Translates to: SNTIMKSETLIPFKYLMLSHRCS*QSRQRD
Trigger: GTCGCGCTGCCTCGACTGCCAGGAACACCTGTGCGA...AAGCATGAGGTATTTGAAGGGAATGAGAGTCTCTGACTTCATGATTGTATTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp TCCTACACTTCCTGTTGGGTGGTTTGGTTTGTAAATCCTTTACATTCAAAGGCCTGCACTCTCTGCAGATaGGGACAGAGCAGGTGTCAC +
Preference number: 4 (lower is better)
Translates to: SYTSCWVVWFVNPLHSKACTLCR*GQSRCH
Trigger: GTGACACCTGCTCTGTCCCCATCTGCAGAGAGTGCA...GGCCTTTGAATGTAAAGGATTTACAAACCAAACCACCCAACAGGAAGTGTAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp TCAAATACAATCATGAAGTCAGAGACTCTCATTCCCTTCAAATACCTCATGCTTTTGAGCTCCTGCACCTaGGCCAGCATCCGGTCTCGG +
Preference number: 4 (lower is better)
Translates to: SNTIMKSETLIPFKYLMLLSSCT*ASIRSR
Trigger: CCGAGACCGGATGCTGGCCCAGGTGCAGGAGCTCAA...AAGCATGAGGTATTTGAAGGGAATGAGAGTCTCTGACTTCATGATTGTATTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR TCA 90 bp TCCTACACTTCCTGTTGGGTGGTTTGGTTTGTAAATCCTTTACATTCAAAGGCCTGGAATCGGCTACGATaGTTCTCCCTTCCTGGTCCA +
Preference number: 4 (lower is better)
Translates to: SYTSCWVVWFVNPLHSKAWNRLR*FSLPGP
Trigger: TGGACCAGGAAGGGAGAATCATCGTAGCCGATTCCA...GGCCTTTGAATGTAAAGGATTTACAAACCAAACCACCCAACAGGAAGTGTAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp TTAGCAAACTGGGAAGAAATTTGCTTGGGATGTCTTGTGTCAAGTCCAGCTTTTGCCTTGACCTCAGACTaGACCACCTTCGCCTTCATC +
Preference number: 4 (lower is better)
Translates to: LANWEEICLGCLVSSPAFALTSD*TTFAFI
Trigger: GATGAAGGCGAAGGTGGTCCAGTCTGAGGTCAAGGC...AAAAGCTGGACTTGACACAAGACATCCCAAGCAAATTTCTTCCCAGTTTGCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp TCAAATACAATCATGAAGTCAGAGACTCTCATTCCCTTCAAATACCTCATGCTTAGCTTGCTGAGACTCTaGCGCAGCTTCTCCACCTGC +
Preference number: 4 (lower is better)
Translates to: SNTIMKSETLIPFKYLMLSLLRL*RSFSTC
Trigger: GCAGGTGGAGAAGCTGCGGCAGAGTCTCAGCAAGCT...AAGCATGAGGTATTTGAAGGGAATGAGAGTCTCTGACTTCATGATTGTATTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR TCA 90 bp CAAAAGTTCTCCAACTATGATCACAATTCCTTAGAAGCCAGCCCTTACACTGATACTGGCCCTCGAAGGTaGAGATCTGAATGCGATGAT +
Preference number: 4 (lower is better)
Translates to: QKFSNYDHNSLEASPYTDTGPRR*RSECDD
Trigger: ATCATCGCATTCAGATCTTCACCTTCGAGGGCCAGT...ATCAGTGTAAGGGCTGGCTTCTAAGGAATTGTGATCATAGTTGGAGAACTTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp TCCTACACTTCCTGTTGGGTGGTTTGGTTTGTAAATCCTTTACATTCAAAGGCCGTACCAAACTTGTGGTaGAAGGAACCACAGGGCTTA +
Preference number: 4 (lower is better)
Translates to: SYTSCWVVWFVNPLHSKAVPNLW*KEPQGL
Trigger: TAAGCCCTGTGGTTCCTTCCACCACAAGTTTGGTAC...GGCCTTTGAATGTAAAGGATTTACAAACCAAACCACCCAACAGGAAGTGTAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR GCA 90 bp TCCTACACTTCCTGTTGGGTGGTTTGGTTTGTAAATCCTTTACATTCAAAGGCCCTGAAACGAGGATCTTaGCCTCAGAATTCACTGCTA +
Preference number: 4 (lower is better)
Translates to: SYTSCWVVWFVNPLHSKALKRGS*PQNSLL
Trigger: TAGCAGTGAATTCTGAGGGCAAGATCCTCGTTTCAG...GGCCTTTGAATGTAAAGGATTTACAAACCAAACCACCCAACAGGAAGTGTAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CCA 90 bp GCATTCACTTCTCTTAAACAAAAAGACCGAAGTGGGCCGTGTATTCTACAGTTACAGGGCTTAAACACCTaGATTCTGTTATTGCTTCGG +
Preference number: 4 (lower is better)
Translates to: AFTSLKQKDRSGPCILQLQGLNT*ILLLLR
Trigger: CCGAAGCAATAACAGAATCCAGGTGTTTAAGCCCTG...TAACTGTAGAATACACGGCCCACTTCGGTCTTTTTGTTTAAGAGAAGTGAATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CAA 72 bp AAATCGAGTTTCTTAGCAAACTGGGAAGAAATTTGCTaGGGATGTCTTGTGTCAAGTCCAGCTTTTCTCCTC +
Preference number: 4 (lower is better)
Translates to: KSSFLANWEEIC*GCLVSSPAFLL
Trigger: GAGGAGAAAAGCTGGACTTGACACAAGACATCCCAAGCAAATTTCTTCCCAGTTTGCTAAGAAACTCGATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CAA 72 bp GACATATACTGTGTCCTACACTTCCTGTTGGGTGGTTaGGTTTGTAAATCCTTTACATTCAAAGGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: DIYCVLHFLLGG*VCKSFTFKGLW
Trigger: CCAAAGGCCTTTGAATGTAAAGGATTTACAAACCAAACCACCCAACAGGAAGTGTAGGACACAGTATATGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
3UTR CAA 72 bp TCCCCAGCCACAATTAAAATCAGGTTTCTGAGAAGGTaGTCAAGATTCATTTGTTCAATTAGTGTCATTAAG +
Preference number: 4 (lower is better)
Translates to: SPATIKIRFLRR*SRFICSISVIK
Trigger: CTTAATGACACTAATTGAACAAATGAATCTTGACAACCTTCTCAGAAACCTGATTTTAATTGTGGCTGGGGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp GGAGAAGGGCGCGCCCGCGAAGGGCGGCCCGAGCCCCAGCTGCTGTaGCGCGGAGGCGGCCGCAGGCCCCGGAGGGCCGCGCTCGATGTA +
Preference number: 5 (lower is better)
Translates to: GEGRAREGRPEPQLL*RGGGRRPRRAALDV
Trigger: TACATCGAGCGCGGCCCTCCGGGGCCTGCGGCCGCCTCCGCGGCACAGCAGCTGGGGCTCGGGCCGCCCTTCGCGGGCGCGCCCTTCTCC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp AGAATGGAGAAGGGCGCGCCCGCGAAGGGCGGCCCGAGCCCCAGCTaGTGTGCCGCGGAGGCGGCCGCAGGCCCCGGAGGGCCGCGCTCG +
Preference number: 5 (lower is better)
Translates to: RMEKGAPAKGGPSPS*CAAEAAAGPGGPRS
Trigger: CGAGCGCGGCCCTCCGGGGCCTGCGGCCGCCTCCGCGGCACAGCAGCTGGGGCTCGGGCCGCCCTTCGCGGGCGCGCCCTTCTCCATTCT
80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp AGTCGAGGCAGCGCGACGAGGCGGCGTTGCCCTCGTCGCAGGAGCTaGAGCCGTGCGGCCGGCGCATCAGCAGCGACCCGGGGGAGGCGG +
Preference number: 5 (lower is better)
Translates to: SRGSATRRRCPRRRS*SRAAGASAATRGRR
Trigger: CCGCCTCCCCCGGGTCGCTGCTGATGCGCCGGCCGCACGGCTGCAGCTCCTGCGACGAGGGCAACGCCGCCTCGTCGCGCTGCCTCGACT
77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 90 bp GCGGCGGCTCTTCGGCGGTGGCCACCACGGCGTCCAGCAGGTTGCTaGGCAGGAAGGCGGAGGATGGCAGCGCGTCCATGCCCGCCGCCT +
Preference number: 5 (lower is better)
Translates to: AAALRRWPPRRPAGC*AGRRRMAARPCPPP
Trigger: AGGCGGCGGGCATGGACGCGCTGCCATCCTCCGCCTTCCTGCTCAGCAACCTGCTGGACGCCGTGGTGGCCACCGCCGAAGAGCCGCCGC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 90 bp GATGGCAGCGCGTCCATGCCCGCCGCCTCGGCCAGGACCACCTTCTaGTCACATACGGGGCAGCGCAGCTTCAGCGCCTCGGCGGGGCCC +
Preference number: 5 (lower is better)
Translates to: DGSASMPAASARTTF*SHTGQRSFSASAGP
Trigger: GGGCCCCGCCGAGGCGCTGAAGCTGCGCTGCCCCGTATGTGACCAGAAGGTGGTCCTGGCCGAGGCGGCGGGCATGGACGCGCTGCCATC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp CGCACAGGTGTTCCTGGCAGTCGAGGCAGCGCGACGAGGCGGCGTTaGCCTCGTCGCAGGAGCTGCAGCCGTGCGGCCGGCGCATCAGCA +
Preference number: 5 (lower is better)
Translates to: RTGVPGSRGSATRRR*PRRRSCSRAAGASA
Trigger: TGCTGATGCGCCGGCCGCACGGCTGCAGCTCCTGCGACGAGGGCAACGCCGCCTCGTCGCGCTGCCTCGACTGCCAGGAACACCTGTGCG
72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 90 bp CGTGGTGCTGGCAGAAGCCGAGGCGCTCCGGGAACACCGAGAGAATaGAGAAGGGCGCGCCCGCGAAGGGCGGCCCGAGCCCCAGCTGCT +
Preference number: 5 (lower is better)
Translates to: RGAGRSRGAPGTPRE*RRARPRRAARAPAA
Trigger: AGCAGCTGGGGCTCGGGCCGCCCTTCGCGGGCGCGCCCTTCTCCATTCTCTCGGTGTTCCCGGAGCGCCTCGGCTTCTGCCAGCACCACG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 90 bp CGGCCGCAGGCCCCGGAGGGCCGCGCTCGATGTAATGGTCCTTGGTaGGGCGGACGCGCTGGTGCGCGCGGACACAGTTGTCGCACAGGT +
Preference number: 5 (lower is better)
Translates to: RPQAPEGRARCNGPW*GGRAGARGHSCRTG
Trigger: ACCTGTGCGACAACTGTGTCCGCGCGCACCAGCGCGTCCGCCTCACCAAGGACCATTACATCGAGCGCGGCCCTCCGGGGCCTGCGGCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 90 bp CGGACGCGCTGGTGCGCGCGGACACAGTTGTCGCACAGGTGTTCCTaGCAGTCGAGGCAGCGCGACGAGGCGGCGTTGCCCTCGTCGCAG +
Preference number: 5 (lower is better)
Translates to: RTRWCARTQLSHRCS*QSRQRDEAALPSSQ
Trigger: CTGCGACGAGGGCAACGCCGCCTCGTCGCGCTGCCTCGACTGCCAGGAACACCTGTGCGACAACTGTGTCCGCGCGCACCAGCGCGTCCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp CGGGCCAGCAGGATGTCCAGGGCGCGGCCCTCTTCCAGGACCTGCTaGACGGCGCTGATGGTGCTCTCCAGCTTGCTGAGACTCTGCCGC +
Preference number: 5 (lower is better)
Translates to: RASRMSRARPSSRTC*TALMVLSSLLRLCR
Trigger: GCGGCAGAGTCTCAGCAAGCTGGAGAGCACCATCAGCGCCGTGCAGCAGGTCCTGGAAGAGGGCCGCGCCCTGGACATCCTGCTGGCCCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 90 bp TCTTGGGGCTGCAGGAGGCCTCGGATGGTCTTGAGCTCCTGCACCTaGGCCAGCATCCGGTCTCGGGCCAGCAGGATGTCCAGGGCGCGG +
Preference number: 5 (lower is better)
Translates to: SWGCRRPRMVLSSCT*ASIRSRASRMSRAR
Trigger: CCGCGCCCTGGACATCCTGCTGGCCCGAGACCGGATGCTGGCCCAGGTGCAGGAGCTCAAGACCATCCGAGGCCTCCTGCAGCCCCAAGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 90 bp CCGACGACGTGGAAGTCTGCGAGGACGACGACGAGGCGGACGAGTTaGAGGAGAGCGGCGCGGGCGAGCCGCACATCTCCTTGCACAGCA +
Preference number: 5 (lower is better)
Translates to: PTTWKSARTTTRRTS*RRAARASRTSPCTA
Trigger: TGCTGTGCAAGGAGATGTGCGGCTCGCCCGCGCCGCTCTCCTCCAACTCGTCCGCCTCGTCGTCGTCCTCGCAGACTTCCACGTCGTCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp TCTCGGGCCAGCAGGATGTCCAGGGCGCGGCCCTCTTCCAGGACCTaGTGCACGGCGCTGATGGTGCTCTCCAGCTTGCTGAGACTCTGC +
Preference number: 5 (lower is better)
Translates to: SRASRMSRARPSSRT*CTALMVLSSLLRLC
Trigger: GCAGAGTCTCAGCAAGCTGGAGAGCACCATCAGCGCCGTGCAGCAGGTCCTGGAAGAGGGCCGCGCCCTGGACATCCTGCTGGCCCGAGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CAA 90 bp CTACCGCTGTCTGCGGAACAGGATTTGTGGCAGGGAAAGCCAGACTGGCTGAGAGCATGGTGCCGGTGGTaGCTGTGGCCGCCCGCGCCC +
Preference number: 5 (lower is better)
Translates to: LPLSAEQDLWQGKPDWLRAWCRW*LWPPAP
Trigger: GGGCGCGGGCGGCCACAGCAACCACCGGCACCATGC...TCTCAGCCAGTCTGGCTTTCCCTGCCACAAATCCTGTTCCGCAGACAGCGGTAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp TCATCTTCTTGGGGCTGCAGGAGGCCTCGGATGGTCTTGAGCTCCTaGACCTGGGCCAGCATCCGGTCTCGGGCCAGCAGGATGTCCAGG +
Preference number: 5 (lower is better)
Translates to: SSSWGCRRPRMVLSS*TWASIRSRASRMSR
Trigger: CCTGGACATCCTGCTGGCCCGAGACCGGATGCTGGCCCAGGTGCAGGAGCTCAAGACCATCCGAGGCCTCCTGCAGCCCCAAGAAGATGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 90 bp GACTGGACCACCTTCGCCTTCATCTCCACCTGTTCTGCCACAGTCTaGGCCTGCTCGATGCTCAGCTGGAGAGCCTGGCGGCCCTGCTGG +
Preference number: 5 (lower is better)
Translates to: DWTTFAFISTCSATV*ACSMLSWRAWRPCW
Trigger: CCAGCAGGGCCGCCAGGCTCTCCAGCTGAGCATCGAGCAGGCCCAGACTGTGGCAGAACAGGTGGAGATGAAGGCGAAGGTGGTCCAGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp CATCCTGGAGGTAGGCGAAGCTGTGGCCACCGTGGCGGCCCAGCGTaGACTCTCTGCAGATGGGGACAGAGCAGGTGTCACAGTAGAGAT +
Preference number: 5 (lower is better)
Translates to: HPGGRRSCGHRGGPA*TLCRWGQSRCHSRD
Trigger: ATCTCTACTGTGACACCTGCTCTGTCCCCATCTGCAGAGAGTGCACGCTGGGCCGCCACGGTGGCCACAGCTTCGCCTACCTCCAGGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp CTTCCTGGTCCACAGCCACACCCTGTGGTCGCAGGAACTGCCCATTaGCCGAGCCCTCCGAACCCAAGAAGCGGGCAGATTGGCAATCAG +
Preference number: 5 (lower is better)
Translates to: LPGPQPHPVVAGTAH*PSPPNPRSGQIGNQ
Trigger: CTGATTGCCAATCTGCCCGCTTCTTGGGTTCGGAGGGCTCGGGCAATGGGCAGTTCCTGCGACCACAGGGTGTGGCTGTGGACCAGGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp ATTCTCCCTTCCTGGTCCACAGCCACACCCTGTGGTCGCAGGAACTaGCCATTGCCCGAGCCCTCCGAACCCAAGAAGCGGGCAGATTGG +
Preference number: 5 (lower is better)
Translates to: ILPSWSTATPCGRRN*PLPEPSEPKKRADW
Trigger: CCAATCTGCCCGCTTCTTGGGTTCGGAGGGCTCGGGCAATGGGCAGTTCCTGCGACCACAGGGTGTGGCTGTGGACCAGGAAGGGAGAAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 90 bp CGAAGCTGTGGCCACCGTGGCGGCCCAGCGTGCACTCTCTGCAGATaGGGACAGAGCAGGTGTCACAGTAGAGATGCAGGACCTCATCGT +
Preference number: 5 (lower is better)
Translates to: RSCGHRGGPACTLCR*GQSRCHSRDAGPHR
Trigger: ACGATGAGGTCCTGCATCTCTACTGTGACACCTGCTCTGTCCCCATCTGCAGAGAGTGCACGCTGGGCCGCCACGGTGGCCACAGCTTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 90 bp CACTTCTGCACCAAACAGGTTTCCGTCGGGGCCGAGGACCACAACTaGCATCAGGTCACCTCCCGAATGGCGGGGCTCACCATCGTGGTC +
Preference number: 5 (lower is better)
Translates to: HFCTKQVSVGAEDHN*HQVTSRMAGLTIVV
Trigger: GACCACGATGGTGAGCCCCGCCATTCGGGAGGTGACCTGATGTCAGTTGTGGTCCTCGGCCCCGACGGAAACCTGTTTGGTGCAGAAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp CTTGACCTCAGACTGGACCACCTTCGCCTTCATCTCCACCTGTTCTaGCACAGTCTGGGCCTGCTCGATGCTCAGCTGGAGAGCCTGGCG +
Preference number: 5 (lower is better)
Translates to: LDLRLDHLRLHLHLF*HSLGLLDAQLESLA
Trigger: CGCCAGGCTCTCCAGCTGAGCATCGAGCAGGCCCAGACTGTGGCAGAACAGGTGGAGATGAAGGCGAAGGTGGTCCAGTCTGAGGTCAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp ATCCTGCGGGAGGCGTCACAAGCCACCCCAGCCGGTCGGTCAAACTaGCCAGGACGAGACCCAAGGGTACCAAACTTGTGGTGGAAGGAA +
Preference number: 5 (lower is better)
Translates to: ILREASQATPAGRSN*PGRDPRVPNLWWKE
Trigger: TTCCTTCCACCACAAGTTTGGTACCCTTGGGTCTCGTCCTGGGCAGTTTGACCGACCGGCTGGGGTGGCTTGTGACGCCTCCCGCAGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 90 bp TACAGGGCCTGGTCAGGGGGCGTGAACATAATGCGGTCATCTTCTTaGGGCTGCAGGAGGCCTCGGATGGTCTTGAGCTCCTGCACCTGG +
Preference number: 5 (lower is better)
Translates to: YRAWSGGVNIMRSSS*GCRRPRMVLSSCTW
Trigger: CCAGGTGCAGGAGCTCAAGACCATCCGAGGCCTCCTGCAGCCCCAAGAAGATGACCGCATTATGTTCACGCCCCCTGACCAGGCCCTGTA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CAA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGCGCAGGAACTGCCCATaGCCCGAGCCCTCCGAACCC +
Preference number: 5 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLRRNCP*PEPSEP
Trigger: GGGTTCGGAGGGCTCGGGCAATGGGCAGTTCCTGCG...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 90 bp AAAGTCCACCACGACGATCAATCCATCCGGGGTGACCGCGATACCTaGGGGGCGGTCCATCTGCCCGAAGCCACTCCCTTGAGCACCAAA +
Preference number: 5 (lower is better)
Translates to: KVHHDDQSIRGDRDT*GAVHLPEATPLSTK
Trigger: TTTGGTGCTCAAGGGAGTGGCTTCGGGCAGATGGACCGCCCCTCAGGTATCGCGGTCACCCCGGATGGATTGATCGTCGTGGTGGACTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 90 bp TTCGATTGTTGCCAAAGTCCACCACGACGATCAATCCATCCGGGGTaGCCGCGATACCTGAGGGGCGGTCCATCTGCCCGAAGCCACTCC +
Preference number: 5 (lower is better)
Translates to: FDCCQSPPRRSIHPG*PRYLRGGPSARSHS
Trigger: GGAGTGGCTTCGGGCAGATGGACCGCCCCTCAGGTATCGCGGTCACCCCGGATGGATTGATCGTCGTGGTGGACTTTGGCAACAATCGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 90 bp TCCAGGGCCTTCTTGTGGCGAGCTGTGACGGCCTTGACCTCAGACTaGACCACCTTCGCCTTCATCTCCACCTGTTCTGCCACAGTCTGG +
Preference number: 5 (lower is better)
Translates to: SRAFLWRAVTALTSD*TTFAFISTCSATVW
Trigger: CCAGACTGTGGCAGAACAGGTGGAGATGAAGGCGAAGGTGGTCCAGTCTGAGGTCAAGGCCGTCACAGCTCGCCACAAGAAGGCCCTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 90 bp ATCGGCTACGATGATTCTCCCTTCCTGGTCCACAGCCACACCCTGTaGTCGCAGGAACTGCCCATTGCCCGAGCCCTCCGAACCCAAGAA +
Preference number: 5 (lower is better)
Translates to: IGYDDSPFLVHSHTL*SQELPIARALRTQE
Trigger: TTCTTGGGTTCGGAGGGCTCGGGCAATGGGCAGTTCCTGCGACCACAGGGTGTGGCTGTGGACCAGGAAGGGAGAATCATCGTAGCCGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 90 bp ACCGCGATACCTGAGGGGCGGTCCATCTGCCCGAAGCCACTCCCTTaGGCACCAAACTTGCACAGGAAGCTGCCATTGGCCTCAAACATC +
Preference number: 5 (lower is better)
Translates to: TAIPEGRSICPKPLP*APNLHRKLPLASNI
Trigger: GATGTTTGAGGCCAATGGCAGCTTCCTGTGCAAGTTTGGTGCTCAAGGGAGTGGCTTCGGGCAGATGGACCGCCCCTCAGGTATCGCGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp ATGGTGCTCTCCAGCTTGCTGAGACTCTGCCGCAGCTTCTCCACCTaGAGGAACAGAGACTTCGCCTTCACCTGCCGGATCTTCTCCACC +
Preference number: 5 (lower is better)
Translates to: MVLSSLLRLCRSFST*RNRDFAFTCRIFST
Trigger: GGTGGAGAAGATCCGGCAGGTGAAGGCGAAGTCTCTGTTCCTGCAGGTGGAGAAGCTGCGGCAGAGTCTCAGCAAGCTGGAGAGCACCAT
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp AGGGGCGGTCCATCTGCCCGAAGCCACTCCCTTGAGCACCAAACTTaGACAGGAAGCTGCCATTGGCCTCAAACATCTGCACGCGGTGAT +
Preference number: 5 (lower is better)
Translates to: RGGPSARSHSLEHQT*TGSCHWPQTSARGD
Trigger: ATCACCGCGTGCAGATGTTTGAGGCCAATGGCAGCTTCCTGTGCAAGTTTGGTGCTCAAGGGAGTGGCTTCGGGCAGATGGACCGCCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CAA 90 bp GACCATCCAAAGTGTCTTCATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTTGCGCGCGGACACAGTaGTCGCACAGGTGTTCCTGG +
Preference number: 5 (lower is better)
Translates to: DHPKCLHPGSLYGPTLSSCARTQ*SHRCSW
Trigger: CCAGGAACACCTGTGCGACAACTGTGTCCGCGCGCA...ACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGATGAAGACACTTTGGATGGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 90 bp CCCGAGCCCTCCGAACCCAAGAAGCGGGCAGATTGGCAATCAGGGTaGATAACCAGAAGCCGGTGGTTGTTGAAGTCGGTGACTACCAGG +
Preference number: 5 (lower is better)
Translates to: PEPSEPKKRADWQSG*ITRSRWLLKSVTTR
Trigger: CCTGGTAGTCACCGACTTCAACAACCACCGGCTTCTGGTTATTCACCCTGATTGCCAATCTGCCCGCTTCTTGGGTTCGGAGGGCTCGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 90 bp GACCCCGTCCGGTCCGAACAACTGGATGCGATGATTCCGGGTGTCTaGAACGAGGATCTTGCCCTCAGAATTCACTGCTACATCCCACGG +
Preference number: 5 (lower is better)
Translates to: DPVRSEQLDAMIPGV*NEDLALRIHCYIPR
Trigger: CCGTGGGATGTAGCAGTGAATTCTGAGGGCAAGATCCTCGTTTCAGACACCCGGAATCATCGCATCCAGTTGTTCGGACCGGACGGGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 90 bp TGGCCTCAAACATCTGCACGCGGTGATTTCTGGAATCGGCTACGATaGTTCTCCCTTCCTGGTCCACAGCCACACCCTGTGGTCGCAGGA +
Preference number: 5 (lower is better)
Translates to: WPQTSARGDFWNRLR*FSLPGPQPHPVVAG
Trigger: TCCTGCGACCACAGGGTGTGGCTGTGGACCAGGAAGGGAGAATCATCGTAGCCGATTCCAGAAATCACCGCGTGCAGATGTTTGAGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp TCTGCCCGAAGCCACTCCCTTGAGCACCAAACTTGCACAGGAAGCTaGCATTGGCCTCAAACATCTGCACGCGGTGATTTCTGGAATCGG +
Preference number: 5 (lower is better)
Translates to: SARSHSLEHQTCTGS*HWPQTSARGDFWNR
Trigger: CCGATTCCAGAAATCACCGCGTGCAGATGTTTGAGGCCAATGGCAGCTTCCTGTGCAAGTTTGGTGCTCAAGGGAGTGGCTTCGGGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 90 bp GTCGGTGACTACCAGGTGACCTTCATTGTTGAAAGCCACGCCCCGTaGAGAGTCGAAGTGCTTCCAGAGAGATCCCTCGAAGCCGTACTT +
Preference number: 5 (lower is better)
Translates to: VGDYQVTFIVESHAP*RVEVLPERSLEAVL
Trigger: AAGTACGGCTTCGAGGGATCTCTCTGGAAGCACTTCGACTCTCCACGGGGCGTGGCTTTCAACAATGAAGGTCACCTGGTAGTCACCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CAA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGAGAAGCCGGTGGTTGTaGAAGTCGGTGACTACCAGG +
Preference number: 5 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLRSRWL*KSVTTR
Trigger: CCTGGTAGTCACCGACTTCAACAACCACCGGCTTCT...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 90 bp CGGCCCGACTTGACCACGACCTTGAAGGGGCTGTTCTCTATATGCTaGTTGTACAATGTCACCGACACCAAGTGCTCACCCTCAAGCTGG +
Preference number: 5 (lower is better)
Translates to: RPDLTTTLKGLFSIC*LYNVTDTKCSPSSW
Trigger: CCAGCTTGAGGGTGAGCACTTGGTGTCGGTGACATTGTACAATCAGCATATAGAGAACAGCCCCTTCAAGGTCGTGGTCAAGTCGGGCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 90 bp AGCCGTACTTGTTCAGGAAGACCCCGTCCGGTCCGAACAACTGGATaGGATGATTCCGGGTGTCTGAAACGAGGATCTTGCCCTCAGAAT +
Preference number: 5 (lower is better)
Translates to: SRTCSGRPRPVRTTG*DDSGCLKRGSCPQN
Trigger: ATTCTGAGGGCAAGATCCTCGTTTCAGACACCCGGAATCATCGCATCCAGTTGTTCGGACCGGACGGGGTCTTCCTGAACAAGTACGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 90 bp CGAAGCCACTCCCTTGAGCACCAAACTTGCACAGGAAGCTGCCATTaGCCTCAAACATCTGCACGCGGTGATTTCTGGAATCGGCTACGA +
Preference number: 5 (lower is better)
Translates to: RSHSLEHQTCTGSCH*PQTSARGDFWNRLR
Trigger: TCGTAGCCGATTCCAGAAATCACCGCGTGCAGATGTTTGAGGCCAATGGCAGCTTCCTGTGCAAGTTTGGTGCTCAAGGGAGTGGCTTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CAA 90 bp ATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTTCTGTTTAGGGTACCCTTGGACTTGACCACGACCTaGAAGGGGCTGTTCTCTATA +
Preference number: 5 (lower is better)
Translates to: IPAASMAQHCPVLFRVPLDLTTT*KGLFSI
Trigger: TATAGAGAACAGCCCCTTCAAGGTCGTGGTCAAGTC...CAAGGGTACCCTAAACAGAACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CAA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGCAAGAAGCGGGCAGATaGGCAATCAGGGTGAATAAC +
Preference number: 5 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLQEAGR*AIRVNN
Trigger: GTTATTCACCCTGATTGCCAATCTGCCCGCTTCTTG...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CAA 90 bp GCCTTTAATGGTGGAAGGTTCTCCATCCGGTCAGAGAAGCAGCTCCTACCGCTGATGAGGATTCGATTGTaGCCAAAGTCCACCACGACG +
Preference number: 5 (lower is better)
Translates to: AFNGGRFSIRSEKQLLPLMRIRL*PKSTTT
Trigger: CGTCGTGGTGGACTTTGGCAACAATCGAATCCTCAT...CAGCGGTAGGAGCTGCTTCTCTGACCGGATGGAGAACCTTCCACCATTAAAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 90 bp TACTTGTTCAGGAAGACCCCGTCCGGTCCGAACAACTGGATGCGATaGTTCCGGGTGTCTGAAACGAGGATCTTGCCCTCAGAATTCACT +
Preference number: 5 (lower is better)
Translates to: YLFRKTPSGPNNWMR*FRVSETRILPSEFT
Trigger: AGTGAATTCTGAGGGCAAGATCCTCGTTTCAGACACCCGGAATCATCGCATCCAGTTGTTCGGACCGGACGGGGTCTTCCTGAACAAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 90 bp AACTTGCACAGGAAGCTGCCATTGGCCTCAAACATCTGCACGCGGTaGTTTCTGGAATCGGCTACGATGATTCTCCCTTCCTGGTCCACA +
Preference number: 5 (lower is better)
Translates to: NLHRKLPLASNICTR*FLESATMILPSWST
Trigger: TGTGGACCAGGAAGGGAGAATCATCGTAGCCGATTCCAGAAATCACCGCGTGCAGATGTTTGAGGCCAATGGCAGCTTCCTGTGCAAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CAA 90 bp ATCCCGGCAGCCTCTATGGCCCAACACTGTCCAGTTCTGTTTAGGGTACCCTTGTCTGAAACGAGGATCTaGCCCTCAGAATTCACTGCT +
Preference number: 5 (lower is better)
Translates to: IPAASMAQHCPVLFRVPLSETRI*PSEFTA
Trigger: AGCAGTGAATTCTGAGGGCAAGATCCTCGTTTCAGA...CAAGGGTACCCTAAACAGAACTGGACAGTGTTGGGCCATAGAGGCTGCCGGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CAA 90 bp AACTGGGAAGAAATTTGCTTGGGATGTCTTGTGTCAAGTCCAGCTTTTCTCCTCGAGCCGCACATCTCCTaGCACAGCAGGCAGATCTGG +
Preference number: 5 (lower is better)
Translates to: NWEEICLGCLVSSPAFLLEPHIS*HSRQIW
Trigger: CCAGATCTGCCTGCTGTGCAAGGAGATGTGCGGCTC...GAGGAGAAAAGCTGGACTTGACACAAGACATCCCAAGCAAATTTCTTCCCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CAA 90 bp AACTGGGAAGAAATTTGCTTGGGATGTCTTGTGTCAAGTCCAGCTTTTCTCCTCATGGTGCTCTCCAGCTaGCTGAGACTCTGCCGCAGC +
Preference number: 5 (lower is better)
Translates to: NWEEICLGCLVSSPAFLLMVLSS*LRLCRS
Trigger: GCTGCGGCAGAGTCTCAGCAAGCTGGAGAGCACCAT...GAGGAGAAAAGCTGGACTTGACACAAGACATCCCAAGCAAATTTCTTCCCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CAA 90 bp AACTGGGAAGAAATTTGCTTGGGATGTCTTGTGTCAAGTCCAGCTTTTCTCCTCAATGCGGTCATCTTCTaGGGGCTGCAGGAGGCCTCG +
Preference number: 5 (lower is better)
Translates to: NWEEICLGCLVSSPAFLLNAVIF*GLQEAS
Trigger: CGAGGCCTCCTGCAGCCCCAAGAAGATGACCGCATT...GAGGAGAAAAGCTGGACTTGACACAAGACATCCCAAGCAAATTTCTTCCCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CAA 90 bp TCCTACACTTCCTGTTGGGTGGTTTGGTTTGTAAATCCTTTACATTCAAAGGCCCCCTCGAAGCCGTACTaGTTCAGGAAGACCCCGTCC +
Preference number: 5 (lower is better)
Translates to: SYTSCWVVWFVNPLHSKAPSKPY*FRKTPS
Trigger: GGACGGGGTCTTCCTGAACAAGTACGGCTTCGAGGG...GGCCTTTGAATGTAAAGGATTTACAAACCAAACCACCCAACAGGAAGTGTAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 90 bp AGGGTACCAAACTTGTGGTGGAAGGAACCACAGGGCTTAAACACCTaGATTCTGTTATTGCTTCGGTCAGCCACTATGATGAAACCCTCC +
Preference number: 5 (lower is better)
Translates to: RVPNLWWKEPQGLNT*ILLLLRSATMMKPS
Trigger: GGAGGGTTTCATCATAGTGGCTGACCGAAGCAATAACAGAATCCAGGTGTTTAAGCCCTGTGGTTCCTTCCACCACAAGTTTGGTACCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CAA 90 bp GTGGAGTTCCTGCCGTGCAATGGGGGTCAGAAACTGGGTTTTAGATCTATGTTGTTAAACTGCCCGTTCTaGGTGCCTTTCTCACCAAAC +
Preference number: 5 (lower is better)
Translates to: VEFLPCNGGQKLGFRSMLLNCPF*VPFSPN
Trigger: GTTTGGTGAGAAAGGCACCAAGAACGGGCAGTTTAA...CAACATAGATCTAAAACCCAGTTTCTGACCCCCATTGCACGGCAGGAACTCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CAA 90 bp CAAAAGTTCTCCAACTATGATCACAATTCCTTAGAAGCCAGCCCTTACACTGATCCCGAAGCCACTCCCTaGAGCACCAAACTTGCACAG +
Preference number: 5 (lower is better)
Translates to: QKFSNYDHNSLEASPYTDPEATP*STKLAQ
Trigger: CTGTGCAAGTTTGGTGCTCAAGGGAGTGGCTTCGGG...ATCAGTGTAAGGGCTGGCTTCTAAGGAATTGTGATCATAGTTGGAGAACTTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS-3UTR CAA 90 bp TCCTACACTTCCTGTTGGGTGGTTTGGTTTGTAAATCCTTTACATTCAAAGGCCAAGATGAGGATTCGATaGTTGCCAAAGTCCACCACG +
Preference number: 5 (lower is better)
Translates to: SYTSCWVVWFVNPLHSKAKMRIR*LPKSTT
Trigger: CGTGGTGGACTTTGGCAACAATCGAATCCTCATCTT...GGCCTTTGAATGTAAAGGATTTACAAACCAAACCACCCAACAGGAAGTGTAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp GAGGCGGCGTTGCCCTCGTCGCAGGAGCTGCAGCCGTaGGGCCGGCGCATCAGCAGCGACCCGGGGGAGGCG +
Preference number: 6 (lower is better)
Translates to: EAALPSSQELQP*GRRISSDPGEA
Trigger: CGCCTCCCCCGGGTCGCTGCTGATGCGCCGGCCGCACGGCTGCAGCTCCTGCGACGAGGGCAACGCCGCCTC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp CCGGGGCCGCCGCCGCCCGCCGACGACGTGGAAGTCTaGGAGGACGACGACGAGGCGGACGAGTTGGAGGAG +
Preference number: 6 (lower is better)
Translates to: PGPPPPADDVEV*EDDDEADELEE
Trigger: CTCCTCCAACTCGTCCGCCTCGTCGTCGTCCTCGCAGACTTCCACGTCGTCGGCGGGCGGCGGCGGCCCCGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp GTTCCTGGCAGTCGAGGCAGCGCGACGAGGCGGCGTTaGCCTCGTCGCAGGAGCTGCAGCCGTGCGGCCGGC +
Preference number: 6 (lower is better)
Translates to: VPGSRGSATRRR*PRRRSCSRAAG
Trigger: GCCGGCCGCACGGCTGCAGCTCCTGCGACGAGGGCAACGCCGCCTCGTCGCGCTGCCTCGACTGCCAGGAAC
75% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 72 bp GGCAGAAGCCGAGGCGCTCCGGGAACACCGAGAGAATaGAGAAGGGCGCGCCCGCGAAGGGCGGCCCGAGCC +
Preference number: 6 (lower is better)
Translates to: GRSRGAPGTPRE*RRARPRRAARA
Trigger: GGCTCGGGCCGCCCTTCGCGGGCGCGCCCTTCTCCATTCTCTCGGTGTTCCCGGAGCGCCTCGGCTTCTGCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CAA 72 bp TGTTCCTGGCAGTCGAGGCAGCGCGACGAGGCGGCGTaGCCCTCGTCGCAGGAGCTGCAGCCGTGCGGCCGG +
Preference number: 6 (lower is better)
Translates to: CSWQSRQRDEAA*PSSQELQPCGR
Trigger: CCGGCCGCACGGCTGCAGCTCCTGCGACGAGGGCAACGCCGCCTCGTCGCGCTGCCTCGACTGCCAGGAACA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CAA 90 bp TCGCACAGGTGTTCCTGGCAGTCGAGGCAGCGCGACGAGGCGGCGTaGCCCTCGTCGCAGGAGCTGCAGCCGTGCGGCCGGCGCATCAGC +
Preference number: 6 (lower is better)
Translates to: SHRCSWQSRQRDEAA*PSSQELQPCGRRIS
Trigger: GCTGATGCGCCGGCCGCACGGCTGCAGCTCCTGCGACGAGGGCAACGCCGCCTCGTCGCGCTGCCTCGACTGCCAGGAACACCTGTGCGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 72 bp GCGTCCATGCCCGCCGCCTCGGCCAGGACCACCTTCTaGTCACATACGGGGCAGCGCAGCTTCAGCGCCTCG +
Preference number: 6 (lower is better)
Translates to: ASMPAASARTTF*SHTGQRSFSAS
Trigger: CGAGGCGCTGAAGCTGCGCTGCCCCGTATGTGACCAGAAGGTGGTCCTGGCCGAGGCGGCGGGCATGGACGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 72 bp GCCCCGGAGGGCCGCGCTCGATGTAATGGTCCTTGGTaGGGCGGACGCGCTGGTGCGCGCGGACACAGTTGT +
Preference number: 6 (lower is better)
Translates to: APEGRARCNGPW*GGRAGARGHSC
Trigger: ACAACTGTGTCCGCGCGCACCAGCGCGTCCGCCTCACCAAGGACCATTACATCGAGCGCGGCCCTCCGGGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp TGGGGCTGCAGGAGGCCTCGGATGGTCTTGAGCTCCTaGACCTGGGCCAGCATCCGGTCTCGGGCCAGCAGG +
Preference number: 6 (lower is better)
Translates to: WGCRRPRMVLSS*TWASIRSRASR
Trigger: CCTGCTGGCCCGAGACCGGATGCTGGCCCAGGTGCAGGAGCTCAAGACCATCCGAGGCCTCCTGCAGCCCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp AGGGCCTGCAGAGCTTGCCCTCCCCGTCACCTTCACTaGCGAAGCTCAGCCCGGGGAGCCCGATGCCCACGT +
Preference number: 6 (lower is better)
Translates to: RACRACPPRHLH*RSSARGARCPR
Trigger: ACGTGGGCATCGGGCTCCCCGGGCTGAGCTTCGGCAGTGAAGGTGACGGGGAGGGCAAGCTCTGCAGGCCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 72 bp TGGTGCGCGCGGACACAGTTGTCGCACAGGTGTTCCTaGCAGTCGAGGCAGCGCGACGAGGCGGCGTTGCCC +
Preference number: 6 (lower is better)
Translates to: WCARTQLSHRCS*QSRQRDEAALP
Trigger: GGGCAACGCCGCCTCGTCGCGCTGCCTCGACTGCCAGGAACACCTGTGCGACAACTGTGTCCGCGCGCACCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 72 bp TGGAAGTCTGCGAGGACGACGACGAGGCGGACGAGTTaGAGGAGAGCGGCGCGGGCGAGCCGCACATCTCCT +
Preference number: 6 (lower is better)
Translates to: WKSARTTTRRTS*RRAARASRTSP
Trigger: AGGAGATGTGCGGCTCGCCCGCGCCGCTCTCCTCCAACTCGTCCGCCTCGTCGTCGTCCTCGCAGACTTCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CAA 72 bp TTGGTGAGGCGGACGCGCTGGTGCGCGCGGACACAGTaGTCGCACAGGTGTTCCTGGCAGTCGAGGCAGCGC +
Preference number: 6 (lower is better)
Translates to: LVRRTRWCARTQ*SHRCSWQSRQR
Trigger: GCGCTGCCTCGACTGCCAGGAACACCTGTGCGACAACTGTGTCCGCGCGCACCAGCGCGTCCGCCTCACCAA
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp GGTAGGCGAAGCTGTGGCCACCGTGGCGGCCCAGCGTaGACTCTCTGCAGATGGGGACAGAGCAGGTGTCAC +
Preference number: 6 (lower is better)
Translates to: GRRSCGHRGGPA*TLCRWGQSRCH
Trigger: GTGACACCTGCTCTGTCCCCATCTGCAGAGAGTGCACGCTGGGCCGCCACGGTGGCCACAGCTTCGCCTACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp AGCAGGATGTCCAGGGCGCGGCCCTCTTCCAGGACCTaGTGCACGGCGCTGATGGTGCTCTCCAGCTTGCTG +
Preference number: 6 (lower is better)
Translates to: SRMSRARPSSRT*CTALMVLSSLL
Trigger: CAGCAAGCTGGAGAGCACCATCAGCGCCGTGCAGCAGGTCCTGGAAGAGGGCCGCGCCCTGGACATCCTGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp GCCTTCATCTCCACCTGTTCTGCCACAGTCTGGGCCTaGTCGATGCTCAGCTGGAGAGCCTGGCGGCCCTGC +
Preference number: 6 (lower is better)
Translates to: AFISTCSATVWA*SMLSWRAWRPC
Trigger: GCAGGGCCGCCAGGCTCTCCAGCTGAGCATCGAGCAGGCCCAGACTGTGGCAGAACAGGTGGAGATGAAGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp AGGATGTCCAGGGCGCGGCCCTCTTCCAGGACCTGCTaGACGGCGCTGATGGTGCTCTCCAGCTTGCTGAGA +
Preference number: 6 (lower is better)
Translates to: RMSRARPSSRTC*TALMVLSSLLR
Trigger: TCTCAGCAAGCTGGAGAGCACCATCAGCGCCGTGCAGCAGGTCCTGGAAGAGGGCCGCGCCCTGGACATCCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 72 bp CACGACGATCAATCCATCCGGGGTGACCGCGATACCTaGGGGGCGGTCCATCTGCCCGAAGCCACTCCCTTG +
Preference number: 6 (lower is better)
Translates to: HDDQSIRGDRDT*GAVHLPEATPL
Trigger: CAAGGGAGTGGCTTCGGGCAGATGGACCGCCCCTCAGGTATCGCGGTCACCCCGGATGGATTGATCGTCGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp CCACAGCCACACCCTGTGGTCGCAGGAACTGCCCATTaGCCGAGCCCTCCGAACCCAAGAAGCGGGCAGATT +
Preference number: 6 (lower is better)
Translates to: PQPHPVVAGTAH*PSPPNPRSGQI
Trigger: AATCTGCCCGCTTCTTGGGTTCGGAGGGCTCGGGCAATGGGCAGTTCCTGCGACCACAGGGTGTGGCTGTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CAA 72 bp TCCACAGCCACACCCTGTGGTCGCAGGAACTGCCCATaGCCCGAGCCCTCCGAACCCAAGAAGCGGGCAGAT +
Preference number: 6 (lower is better)
Translates to: STATPCGRRNCP*PEPSEPKKRAD
Trigger: ATCTGCCCGCTTCTTGGGTTCGGAGGGCTCGGGCAATGGGCAGTTCCTGCGACCACAGGGTGTGGCTGTGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CAA 90 bp CCTTCCTGGTCCACAGCCACACCCTGTGGTCGCAGGAACTGCCCATaGCCCGAGCCCTCCGAACCCAAGAAGCGGGCAGATTGGCAATCA +
Preference number: 6 (lower is better)
Translates to: PSWSTATPCGRRNCP*PEPSEPKKRADWQS
Trigger: TGATTGCCAATCTGCCCGCTTCTTGGGTTCGGAGGGCTCGGGCAATGGGCAGTTCCTGCGACCACAGGGTGTGGCTGTGGACCAGGAAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 72 bp ACCAAACAGGTTTCCGTCGGGGCCGAGGACCACAACTaGCATCAGGTCACCTCCCGAATGGCGGGGCTCACC +
Preference number: 6 (lower is better)
Translates to: TKQVSVGAEDHN*HQVTSRMAGLT
Trigger: GGTGAGCCCCGCCATTCGGGAGGTGACCTGATGTCAGTTGTGGTCCTCGGCCCCGACGGAAACCTGTTTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 72 bp CCTGAGGGGCGGTCCATCTGCCCGAAGCCACTCCCTTaGGCACCAAACTTGCACAGGAAGCTGCCATTGGCC +
Preference number: 6 (lower is better)
Translates to: PEGRSICPKPLP*APNLHRKLPLA
Trigger: GGCCAATGGCAGCTTCCTGTGCAAGTTTGGTGCTCAAGGGAGTGGCTTCGGGCAGATGGACCGCCCCTCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 72 bp TGCCAAAGTCCACCACGACGATCAATCCATCCGGGGTaGCCGCGATACCTGAGGGGCGGTCCATCTGCCCGA +
Preference number: 6 (lower is better)
Translates to: CQSPPRRSIHPG*PRYLRGGPSAR
Trigger: TCGGGCAGATGGACCGCCCCTCAGGTATCGCGGTCACCCCGGATGGATTGATCGTCGTGGTGGACTTTGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp GAGGCGTCACAAGCCACCCCAGCCGGTCGGTCAAACTaGCCAGGACGAGACCCAAGGGTACCAAACTTGTGG +
Preference number: 6 (lower is better)
Translates to: EASQATPAGRSN*PGRDPRVPNLW
Trigger: CCACAAGTTTGGTACCCTTGGGTCTCGTCCTGGGCAGTTTGACCGACCGGCTGGGGTGGCTTGTGACGCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CAA 90 bp GTACAGGGCCTGGTCAGGGGGCGTGAACATAATGCGGTCATCTTCTaGGGGCTGCAGGAGGCCTCGGATGGTCTTGAGCTCCTGCACCTG +
Preference number: 6 (lower is better)
Translates to: VQGLVRGREHNAVIF*GLQEASDGLELLHL
Trigger: CAGGTGCAGGAGCTCAAGACCATCCGAGGCCTCCTGCAGCCCCAAGAAGATGACCGCATTATGTTCACGCCCCCTGACCAGGCCCTGTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 72 bp AACAGCTCACACTCCCGATCCTCCAGGGCCTTCTTGTaGCGAGCTGTGACGGCCTTGACCTCAGACTGGACC +
Preference number: 6 (lower is better)
Translates to: NSSHSRSSRAFL*RAVTALTSDWT
Trigger: GGTCCAGTCTGAGGTCAAGGCCGTCACAGCTCGCCACAAGAAGGCCCTGGAGGATCGGGAGTGTGAGCTGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CAA 72 bp CACAACAGCTCACACTCCCGATCCTCCAGGGCCTTCTaGTGGCGAGCTGTGACGGCCTTGACCTCAGACTGG +
Preference number: 6 (lower is better)
Translates to: HNSSHSRSSRAF*WRAVTALTSDW
Trigger: CCAGTCTGAGGTCAAGGCCGTCACAGCTCGCCACAAGAAGGCCCTGGAGGATCGGGAGTGTGAGCTGTTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CAA 90 bp TCCACCTTCCACAACAGCTCACACTCCCGATCCTCCAGGGCCTTCTaGTGGCGAGCTGTGACGGCCTTGACCTCAGACTGGACCACCTTC +
Preference number: 6 (lower is better)
Translates to: STFHNSSHSRSSRAF*WRAVTALTSDWTTF
Trigger: GAAGGTGGTCCAGTCTGAGGTCAAGGCCGTCACAGCTCGCCACAAGAAGGCCCTGGAGGATCGGGAGTGTGAGCTGTTGTGGAAGGTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp AGACTGGACCACCTTCGCCTTCATCTCCACCTGTTCTaGCACAGTCTGGGCCTGCTCGATGCTCAGCTGGAG +
Preference number: 6 (lower is better)
Translates to: RLDHLRLHLHLF*HSLGLLDAQLE
Trigger: CTCCAGCTGAGCATCGAGCAGGCCCAGACTGTGGCAGAACAGGTGGAGATGAAGGCGAAGGTGGTCCAGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp TCCAGCTTGCTGAGACTCTGCCGCAGCTTCTCCACCTaGAGGAACAGAGACTTCGCCTTCACCTGCCGGATC +
Preference number: 6 (lower is better)
Translates to: SSLLRLCRSFST*RNRDFAFTCRI
Trigger: GATCCGGCAGGTGAAGGCGAAGTCTCTGTTCCTGCAGGTGGAGAAGCTGCGGCAGAGTCTCAGCAAGCTGGA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 72 bp TGGTCAGGGGGCGTGAACATAATGCGGTCATCTTCTTaGGGCTGCAGGAGGCCTCGGATGGTCTTGAGCTCC +
Preference number: 6 (lower is better)
Translates to: WSGGVNIMRSSS*GCRRPRMVLSS
Trigger: GGAGCTCAAGACCATCCGAGGCCTCCTGCAGCCCCAAGAAGATGACCGCATTATGTTCACGCCCCCTGACCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CAA 72 bp CTGGTCAGGGGGCGTGAACATAATGCGGTCATCTTCTaGGGGCTGCAGGAGGCCTCGGATGGTCTTGAGCTC +
Preference number: 6 (lower is better)
Translates to: LVRGREHNAVIF*GLQEASDGLEL
Trigger: GAGCTCAAGACCATCCGAGGCCTCCTGCAGCCCCAAGAAGATGACCGCATTATGTTCACGCCCCCTGACCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 72 bp TTCTTGTGGCGAGCTGTGACGGCCTTGACCTCAGACTaGACCACCTTCGCCTTCATCTCCACCTGTTCTGCC +
Preference number: 6 (lower is better)
Translates to: FLWRAVTALTSD*TTFAFISTCSA
Trigger: GGCAGAACAGGTGGAGATGAAGGCGAAGGTGGTCCAGTCTGAGGTCAAGGCCGTCACAGCTCGCCACAAGAA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 72 bp AGATCTGAATGCGATGATTGTCTTTGTCGGCCACTATaGTCCTGCGGGAGGCGTCACAAGCCACCCCAGCCG +
Preference number: 6 (lower is better)
Translates to: RSECDDCLCRPL*SCGRRHKPPQP
Trigger: CGGCTGGGGTGGCTTGTGACGCCTCCCGCAGGATCATAGTGGCCGACAAAGACAATCATCGCATTCAGATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 72 bp AGGAAGACCCCGTCCGGTCCGAACAACTGGATGCGATaGTTCCGGGTGTCTGAAACGAGGATCTTGCCCTCA +
Preference number: 6 (lower is better)
Translates to: RKTPSGPNNWMR*FRVSETRILPS
Trigger: TGAGGGCAAGATCCTCGTTTCAGACACCCGGAATCATCGCATCCAGTTGTTCGGACCGGACGGGGTCTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CAA 72 bp TCGAAGTGCTTCCAGAGAGATCCCTCGAAGCCGTACTaGTTCAGGAAGACCCCGTCCGGTCCGAACAACTGG +
Preference number: 6 (lower is better)
Translates to: SKCFQRDPSKPY*FRKTPSGPNNW
Trigger: CCAGTTGTTCGGACCGGACGGGGTCTTCCTGAACAAGTACGGCTTCGAGGGATCTCTCTGGAAGCACTTCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 72 bp AGAAGCCGGTGGTTGTTGAAGTCGGTGACTACCAGGTaGCCTTCATTGTTGAAAGCCACGCCCCGTGGAGAG +
Preference number: 6 (lower is better)
Translates to: RSRWLLKSVTTR*PSLLKATPRGE
Trigger: CTCTCCACGGGGCGTGGCTTTCAACAATGAAGGTCACCTGGTAGTCACCGACTTCAACAACCACCGGCTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp TTCTCCACCTGCAGGAACAGAGACTTCGCCTTCACCTaGCGGATCTTCTCCACCTTCCACAACAGCTCACAC +
Preference number: 6 (lower is better)
Translates to: FSTCRNRDFAFT*RIFSTFHNSSH
Trigger: GTGTGAGCTGTTGTGGAAGGTGGAGAAGATCCGGCAGGTGAAGGCGAAGTCTCTGTTCCTGCAGGTGGAGAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp CACTATGTAAGTACCATTCTGCTGGTCGCTCACTTCTaGACCAAACAGGTTTCCGTCGGGGCCGAGGACCAC +
Preference number: 6 (lower is better)
Translates to: HYVSTILLVAHF*TKQVSVGAEDH
Trigger: GTGGTCCTCGGCCCCGACGGAAACCTGTTTGGTGCAGAAGTGAGCGACCAGCAGAATGGTACTTACATAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 72 bp TCCGAACCCAAGAAGCGGGCAGATTGGCAATCAGGGTaGATAACCAGAAGCCGGTGGTTGTTGAAGTCGGTG +
Preference number: 6 (lower is better)
Translates to: SEPKKRADWQSG*ITRSRWLLKSV
Trigger: CACCGACTTCAACAACCACCGGCTTCTGGTTATTCACCCTGATTGCCAATCTGCCCGCTTCTTGGGTTCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp TCATTGTTGAAAGCCACGCCCCGTGGAGAGTCGAAGTaGTTCCAGAGAGATCCCTCGAAGCCGTACTTGTTC +
Preference number: 6 (lower is better)
Translates to: SLLKATPRGESK*FQRDPSKPYLF
Trigger: GAACAAGTACGGCTTCGAGGGATCTCTCTGGAAGCACTTCGACTCTCCACGGGGCGTGGCTTTCAACAATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp AGCCACTCCCTTGAGCACCAAACTTGCACAGGAAGCTaGCATTGGCCTCAAACATCTGCACGCGGTGATTTC +
Preference number: 6 (lower is better)
Translates to: SHSLEHQTCTGS*HWPQTSARGDF
Trigger: GAAATCACCGCGTGCAGATGTTTGAGGCCAATGGCAGCTTCCTGTGCAAGTTTGGTGCTCAAGGGAGTGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 72 bp TACCAGGTGACCTTCATTGTTGAAAGCCACGCCCCGTaGAGAGTCGAAGTGCTTCCAGAGAGATCCCTCGAA +
Preference number: 6 (lower is better)
Translates to: YQVTFIVESHAP*RVEVLPERSLE
Trigger: TTCGAGGGATCTCTCTGGAAGCACTTCGACTCTCCACGGGGCGTGGCTTTCAACAATGAAGGTCACCTGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CAA 72 bp TCAAACTGCCCAGGACGAGACCCAAGGGTACCAAACTaGTGGTGGAAGGAACCACAGGGCTTAAACACCTGG +
Preference number: 6 (lower is better)
Translates to: SNCPGRDPRVPN*WWKEPQGLNTW
Trigger: CCAGGTGTTTAAGCCCTGTGGTTCCTTCCACCACAAGTTTGGTACCCTTGGGTCTCGTCCTGGGCAGTTTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 72 bp CGGTCCGAACAACTGGATGCGATGATTCCGGGTGTCTaGAACGAGGATCTTGCCCTCAGAATTCACTGCTAC +
Preference number: 6 (lower is better)
Translates to: RSEQLDAMIPGV*NEDLALRIHCY
Trigger: GTAGCAGTGAATTCTGAGGGCAAGATCCTCGTTTCAGACACCCGGAATCATCGCATCCAGTTGTTCGGACCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 72 bp AGGAAGCTGCCATTGGCCTCAAACATCTGCACGCGGTaGTTTCTGGAATCGGCTACGATGATTCTCCCTTCC +
Preference number: 6 (lower is better)
Translates to: RKLPLASNICTR*FLESATMILPS
Trigger: GGAAGGGAGAATCATCGTAGCCGATTCCAGAAATCACCGCGTGCAGATGTTTGAGGCCAATGGCAGCTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS GCA 72 bp GGATGCGATGATTCCGGGTGTCTGAAACGAGGATCTTaGCCTCAGAATTCACTGCTACATCCCACGGGTAGT +
Preference number: 6 (lower is better)
Translates to: GCDDSGCLKRGS*PQNSLLHPTGS
Trigger: ACTACCCGTGGGATGTAGCAGTGAATTCTGAGGGCAAGATCCTCGTTTCAGACACCCGGAATCATCGCATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS CCA 72 bp TCCCTTGAGCACCAAACTTGCACAGGAAGCTGCCATTaGCCTCAAACATCTGCACGCGGTGATTTCTGGAAT +
Preference number: 6 (lower is better)
Translates to: SLEHQTCTGSCH*PQTSARGDFWN
Trigger: ATTCCAGAAATCACCGCGTGCAGATGTTTGAGGCCAATGGCAGCTTCCTGTGCAAGTTTGGTGCTCAAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3
CDS TCA 72 bp TTGACCACGACCTTGAAGGGGCTGTTCTCTATATGCTaGTTGTACAATGTCACCGACACCAAGTGCTCACCC +
Preference number: 6 (lower is better)
Translates to: LTTTLKGLFSIC*LYNVTDTKCSP
Trigger: GGGTGAGCACTTGGTGTCGGTGACATTGTACAATCAGCATATAGAGAACAGCCCCTTCAAGGTCGTGGTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111816.3