RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRIM62 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041000

Ensembl transcript IDs: ENSMUST00000035667.9, ENSMUST00000147852.2

Found 210 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCTTGAGCCTCTCAGACAGGGAGGCCACTCCTGCAAGGAAGGTGTaGCGGTCAGTCTCTGCCAGCCGCTCCTGCAGGATCTGGGCCCCC +
Preference number: 1 (lower is better)
Translates to: PLSLSDREATPARKV*RSVSASRSCRIWAP
Trigger: GGGGGCCCAGATCCTGCAGGAGCGGCTGGCAGAGACTGACCGCCACACCTTCCTTGCAGGAGTGGCCTCCCTGTCTGAGAGGCTCAAGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 90 bp AGACAGGGAGGCCACTCCTGCAAGGAAGGTGTGGCGGTCAGTCTCTaGCAGCCGCTCCTGCAGGATCTGGGCCCCCTCTTGCACCTTTCG +
Preference number: 1 (lower is better)
Translates to: RQGGHSCKEGVAVSL*QPLLQDLGPLLHLS
Trigger: CGAAAGGTGCAAGAGGGGGCCCAGATCCTGCAGGAGCGGCTGGCAGAGACTGACCGCCACACCTTCCTTGCAGGAGTGGCCTCCCTGTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR TCA 90 bp TCTCCAGCTCGCAGAAGGGGAGGAGGAGGGGACAAACAGTTGGCCTaGGGTCTCAGGGTGGCCACAGTGGGCCTGAGCAGTCCAGGTCCT +
Preference number: 1 (lower is better)
Translates to: SPARRRGGGGDKQLA*GLRVATVGLSSPGP
Trigger: AGGACCTGGACTGCTCAGGCCCACTGTGGCCACCCTGAGACCTCAGGCCAACTGTTTGTCCCCTCCTCCTCCCCTTCTGCGAGCTGGAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR GCA 90 bp GTGGGCCTGAGCAGTCCAGGTCCTCCATCTGTCAGGCAAGGCTCTTaGTGGTGGTCACAGCCCCAGGAGGCTTTGGTCTCCCTCTGCCCA +
Preference number: 1 (lower is better)
Translates to: VGLSSPGPPSVRQGS*WWSQPQEALVSLCP
Trigger: TGGGCAGAGGGAGACCAAAGCCTCCTGGGGCTGTGACCACCAGCAAGAGCCTTGCCTGACAGATGGAGGACCTGGACTGCTCAGGCCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 90 bp TGTCCGTCAGTGTGCGGGCTGTGTCGGCCTCCAGTTCCTCCAGCATaGCCTTCTGTCGCTCTCGAAGTAGCCGGTGCAGCCGCTCAAAGG +
Preference number: 1 (lower is better)
Translates to: CPSVCGLCRPPVPPA*PSVALEVAGAAAQR
Trigger: CCTTTGAGCGGCTGCACCGGCTACTTCGAGAGCGACAGAAGGCCATGCTGGAGGAACTGGAGGCCGACACAGCCCGCACACTGACGGACA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 90 bp TCCAGTTCCTCCAGCATGGCCTTCTGTCGCTCTCGAAGTAGCCGGTaGAGCCGCTCAAAGGCTTCCCCGATGGTGGTCCGCAGGCTCTTG +
Preference number: 1 (lower is better)
Translates to: SSSSSMAFCRSRSSR*SRSKASPMVVRRLL
Trigger: CAAGAGCCTGCGGACCACCATCGGGGAAGCCTTTGAGCGGCTGCACCGGCTACTTCGAGAGCGACAGAAGGCCATGCTGGAGGAACTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 90 bp ACTCCTGCAAGGAAGGTGTGGCGGTCAGTCTCTGCCAGCCGCTCCTaGAGGATCTGGGCCCCCTCTTGCACCTTTCGTAGTTGCTGGCTG +
Preference number: 1 (lower is better)
Translates to: TPARKVWRSVSASRS*RIWAPSCTFRSCWL
Trigger: CAGCCAGCAACTACGAAAGGTGCAAGAGGGGGCCCAGATCCTGCAGGAGCGGCTGGCAGAGACTGACCGCCACACCTTCCTTGCAGGAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 90 bp CTCATGAATCTTCCCCTTGAGCCTCTCAGACAGGGAGGCCACTCCTaGAAGGAAGGTGTGGCGGTCAGTCTCTGCCAGCCGCTCCTGCAG +
Preference number: 1 (lower is better)
Translates to: LMNLPLEPLRQGGHS*KEGVAVSLCQPLLQ
Trigger: CTGCAGGAGCGGCTGGCAGAGACTGACCGCCACACCTTCCTTGCAGGAGTGGCCTCCCTGTCTGAGAGGCTCAAGGGGAAGATTCATGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 90 bp GTTGCTGGCTGTAACGCTGGACCTTCTGCTCAATGTCCGTCAGTGTaGGGGCTGTGTCGGCCTCCAGTTCCTCCAGCATGGCCTTCTGTC +
Preference number: 1 (lower is better)
Translates to: VAGCNAGPSAQCPSV*GLCRPPVPPAWPSV
Trigger: GACAGAAGGCCATGCTGGAGGAACTGGAGGCCGACACAGCCCGCACACTGACGGACATTGAGCAGAAGGTCCAGCGTTACAGCCAGCAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 90 bp CCCTCCTCCCCTCTCCCCCGCAGACGCTGCTCCCACCCTTGCTGCTaGCATATTCGAGGCTTCTATGATATGTGCACATCTCATGTCAGA +
Preference number: 1 (lower is better)
Translates to: PSSPLPRRRCSHPCC*HIRGFYDMCTSHVR
Trigger: TCTGACATGAGATGTGCACATATCATAGAAGCCTCGAATATGGCAGCAGCAAGGGTGGGAGCAGCGTCTGCGGGGGAGAGGGGAGGAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR CCA 90 bp CTCTGCTCACTTCCTGCTCTGCCACCTGTCACACCAGGGCCCAGGTaGCAATCCATATTTCTCTTCTCGCCAAGGGGACAGGCAGAGTCT +
Preference number: 1 (lower is better)
Translates to: LCSLPALPPVTPGPR*QSIFLFSPRGQAES
Trigger: AGACTCTGCCTGTCCCCTTGGCGAGAAGAGAAATATGGATTGCCACCTGGGCCCTGGTGTGACAGGTGGCAGAGCAGGAAGTGAGCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 90 bp AATCCCTCCTCCCCTCTCCCCCGCAGACGCTGCTCCCACCCTTGCTaGTGCCATATTCGAGGCTTCTATGATATGTGCACATCTCATGTC +
Preference number: 1 (lower is better)
Translates to: NPSSPLPRRRCSHPC*CHIRGFYDMCTSHV
Trigger: GACATGAGATGTGCACATATCATAGAAGCCTCGAATATGGCAGCAGCAAGGGTGGGAGCAGCGTCTGCGGGGGAGAGGGGAGGAGGGATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR CCA 90 bp GGCAGCCAGCAGCTTGTGGGGCAGCTGCAAATGGAAGCACCATTCTaGTCACAAGACACAAACCCTCTAGATGGTGGGAGCTGTTCCTGG +
Preference number: 1 (lower is better)
Translates to: GSQQLVGQLQMEAPF*SQDTNPLDGGSCSW
Trigger: CCAGGAACAGCTCCCACCATCTAGAGGGTTTGTGTCTTGTGACCAGAATGGTGCTTCCATTTGCAGCTGCCCCACAAGCTGCTGGCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 90 bp GGTGTGGTGGGACAGACACGGACAATAACTTTCTGGCGTGGATGGTaGCAGCCAGCAGCTTGTGGGGCAGCTGCAAATGGAAGCACCATT +
Preference number: 1 (lower is better)
Translates to: GVVGQTRTITFWRGW*QPAACGAAANGSTI
Trigger: AATGGTGCTTCCATTTGCAGCTGCCCCACAAGCTGCTGGCTGCCACCATCCACGCCAGAAAGTTATTGTCCGTGTCTGTCCCACCACACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR GCA 90 bp GAAGCAGTTAAAGAACAGGACAGAACAGAACATAGGCTGGCACTCTaGTCACTTCCTGCTCTGCCACCTGTCACACCAGGGCCCAGGTGG +
Preference number: 1 (lower is better)
Translates to: EAVKEQDRTEHRLAL*SLPALPPVTPGPRW
Trigger: CCACCTGGGCCCTGGTGTGACAGGTGGCAGAGCAGGAAGTGAGCAGAGTGCCAGCCTATGTTCTGTTCTGTCCTGTTCTTTAACTGCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR TCA 90 bp GGCTCACCGGAGATGGACATGCTCACTGAATCCCAAGTACAGAATTaGGGACCTGGGGCAACAAAGGAAGGCCCAGGCTGGGAAGTCATT +
Preference number: 1 (lower is better)
Translates to: GSPEMDMLTESQVQN*GPGATKEGPGWEVI
Trigger: AATGACTTCCCAGCCTGGGCCTTCCTTTGTTGCCCCAGGTCCTCAATTCTGTACTTGGGATTCAGTGAGCATGTCCATCTCCGGTGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR TCA 90 bp GTGTACTTGGAGGTCGGGAAGTCTTCGTACGTTAGGTTGGTCTCATaGATCTTCCCCTTGAGCCTCTCAGACAGGGAGGCCACTCCTGCA +
Preference number: 1 (lower is better)
Translates to: VYLEVGKSSYVRLVS*IFPLSLSDREATPA
Trigger: TGCAGGAGTGGCCTCCCTGTCTGAGAGGCTCAAGGGGAAGATTCATGAGACCAACCTAACGTACGAAGACTTCCCGACCTCCAAGTACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR TCA 90 bp AGTGTGGTGTCTTGGAGGGCTTTGACTGATGGGGTGAGGCACCTATaGCAGGGATGGAACAGACAGCAGCAAGGCAGAAAGCTCCTAGAC +
Preference number: 1 (lower is better)
Translates to: SVVSWRALTDGVRHL*QGWNRQQQGRKLLD
Trigger: GTCTAGGAGCTTTCTGCCTTGCTGCTGTCTGTTCCATCCCTGTCATAGGTGCCTCACCCCATCAGTCAAAGCCCTCCAAGACACCACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 90 bp AGGACAGAACAGAACATAGGCTGGCACTCTGCTCACTTCCTGCTCTaGCACCTGTCACACCAGGGCCCAGGTGGCAATCCATATTTCTCT +
Preference number: 1 (lower is better)
Translates to: RTEQNIGWHSAHFLL*HLSHQGPGGNPYFS
Trigger: AGAGAAATATGGATTGCCACCTGGGCCCTGGTGTGACAGGTGGCAGAGCAGGAAGTGAGCAGAGTGCCAGCCTATGTTCTGTTCTGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 90 bp ATTAATCCCTCCTCCCCTCTCCCCCGCAGACGCTGCTCCCACCCTTaGTGCTGCCATATTCGAGGCTTCTATGATATGTGCACATCTCAT +
Preference number: 1 (lower is better)
Translates to: INPSSPLPRRRCSHP*CCHIRGFYDMCTSH
Trigger: ATGAGATGTGCACATATCATAGAAGCCTCGAATATGGCAGCAGCAAGGGTGGGAGCAGCGTCTGCGGGGGAGAGGGGAGGAGGGATTAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 90 bp TTGGAACTTCTGATTAATCCCTCCTCCCCTCTCCCCCGCAGACGCTaGTCCCACCCTTGCTGCTGCCATATTCGAGGCTTCTATGATATG +
Preference number: 1 (lower is better)
Translates to: LELLINPSSPLPRRR*SHPCCCHIRGFYDM
Trigger: CATATCATAGAAGCCTCGAATATGGCAGCAGCAAGGGTGGGAGCAGCGTCTGCGGGGGAGAGGGGAGGAGGGATTAATCAGAAGTTCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR TCA 90 bp CAGACGCTGCTCCCACCCTTGCTGCTGCCATATTCGAGGCTTCTATaGTATGTGCACATCTCATGTCAGAGCGCTTATCCTGCCAGACCA +
Preference number: 1 (lower is better)
Translates to: QTLLPPLLLPYSRLL*YVHISCQSAYPARP
Trigger: TGGTCTGGCAGGATAAGCGCTCTGACATGAGATGTGCACATATCATAGAAGCCTCGAATATGGCAGCAGCAAGGGTGGGAGCAGCGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 90 bp TCACCTGGATGGATGTCCTGGAAAAGCGATTTCCAGATGGTGTACTaGAGGGGGCCTGTGTACTTGGAGGTCGGGAAGTCTTCGTACGTT +
Preference number: 1 (lower is better)
Translates to: SPGWMSWKSDFQMVY*RGPVYLEVGKSSYV
Trigger: AACGTACGAAGACTTCCCGACCTCCAAGTACACAGGCCCCCTGCAGTACACCATCTGGAAATCGCTTTTCCAGGACATCCATCCAGGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR CCA 90 bp ACGGACAATAACTTTCTGGCGTGGATGGTGGCAGCCAGCAGCTTGTaGGGCAGCTGCAAATGGAAGCACCATTCTGGTCACAAGACACAA +
Preference number: 1 (lower is better)
Translates to: TDNNFLAWMVAASSL*GSCKWKHHSGHKTQ
Trigger: TTGTGTCTTGTGACCAGAATGGTGCTTCCATTTGCAGCTGCCCCACAAGCTGCTGGCTGCCACCATCCACGCCAGAAAGTTATTGTCCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 90 bp CATATTTCTCTTCTCGCCAAGGGGACAGGCAGAGTCTCACCTGGATaGATGTCCTGGAAAAGCGATTTCCAGATGGTGTACTGCAGGGGG +
Preference number: 1 (lower is better)
Translates to: HISLLAKGTGRVSPG*MSWKSDFQMVYCRG
Trigger: CCCCCTGCAGTACACCATCTGGAAATCGCTTTTCCAGGACATCCATCCAGGTGAGACTCTGCCTGTCCCCTTGGCGAGAAGAGAAATATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR CCA 90 bp AGTGACATGAAGCAGTTAAAGAACAGGACAGAACAGAACATAGGCTaGCACTCTGCTCACTTCCTGCTCTGCCACCTGTCACACCAGGGC +
Preference number: 1 (lower is better)
Translates to: SDMKQLKNRTEQNIG*HSAHFLLCHLSHQG
Trigger: GCCCTGGTGTGACAGGTGGCAGAGCAGGAAGTGAGCAGAGTGCCAGCCTATGTTCTGTTCTGTCCTGTTCTTTAACTGCTTCATGTCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR CCA 90 bp GGAAAAGCGATTTCCAGATGGTGTACTGCAGGGGGCCTGTGTACTTaGAGGTCGGGAAGTCTTCGTACGTTAGGTTGGTCTCATGAATCT +
Preference number: 1 (lower is better)
Translates to: GKAISRWCTAGGLCT*RSGSLRTLGWSHES
Trigger: AGATTCATGAGACCAACCTAACGTACGAAGACTTCCCGACCTCCAAGTACACAGGCCCCCTGCAGTACACCATCTGGAAATCGCTTTTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 90 bp GTGAGAACCCCTCAAGTTCATATTCTGGCTCACCGGAGATGGACATaGTCACTGAATCCCAAGTACAGAATTGAGGACCTGGGGCAACAA +
Preference number: 1 (lower is better)
Translates to: VRTPQVHILAHRRWT*SLNPKYRIEDLGQQ
Trigger: TTGTTGCCCCAGGTCCTCAATTCTGTACTTGGGATTCAGTGAGCATGTCCATCTCCGGTGAGCCAGAATATGAACTTGAGGGGTTCTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 90 bp CAAGACACAAACCCTCTAGATGGTGGGAGCTGTTCCTGGAAACTCTaGCAAAGGCTGTCCTCTTCCATCCCTTTCAGTGATCTTGCAAGT +
Preference number: 1 (lower is better)
Translates to: QDTNPLDGGSCSWKL*QRLSSSIPFSDLAS
Trigger: ACTTGCAAGATCACTGAAAGGGATGGAAGAGGACAGCCTTTGCCAGAGTTTCCAGGAACAGCTCCCACCATCTAGAGGGTTTGTGTCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 90 bp TTCTGGTCACAAGACACAAACCCTCTAGATGGTGGGAGCTGTTCCTaGAAACTCTGGCAAAGGCTGTCCTCTTCCATCCCTTTCAGTGAT +
Preference number: 1 (lower is better)
Translates to: FWSQDTNPLDGGSCS*KLWQRLSSSIPFSD
Trigger: ATCACTGAAAGGGATGGAAGAGGACAGCCTTTGCCAGAGTTTCCAGGAACAGCTCCCACCATCTAGAGGGTTTGTGTCTTGTGACCAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 90 bp AATCCATATTTCTCTTCTCGCCAAGGGGACAGGCAGAGTCTCACCTaGATGGATGTCCTGGAAAAGCGATTTCCAGATGGTGTACTGCAG +
Preference number: 1 (lower is better)
Translates to: NPYFSSRQGDRQSLT*MDVLEKRFPDGVLQ
Trigger: CTGCAGTACACCATCTGGAAATCGCTTTTCCAGGACATCCATCCAGGTGAGACTCTGCCTGTCCCCTTGGCGAGAAGAGAAATATGGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR TCA 90 bp AGCAAAGCTACAAAGGAGAGTGAGTTTTGGTCGTCAAATACTGACTaGCGATGGTGCCAAGGTCCCCAGACAAATGCTCAGAGGACAGAG +
Preference number: 1 (lower is better)
Translates to: SKATKESEFWSSNTD*RWCQGPQTNAQRTE
Trigger: CTCTGTCCTCTGAGCATTTGTCTGGGGACCTTGGCACCATCGTCAGTCAGTATTTGACGACCAAAACTCACTCTCCTTTGTAGCTTTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR TCA 90 bp TTCACTATAGGATACAATAATAAATCCATCCAGGTGGATGGACTCTaGCTCCTGTCCCTCCACTTGGGGAACAGGCACAGCAATGGAACA +
Preference number: 1 (lower is better)
Translates to: FTIGYNNKSIQVDGL*LLSLHLGNRHSNGT
Trigger: TGTTCCATTGCTGTGCCTGTTCCCCAAGTGGAGGGACAGGAGTCAGAGTCCATCCACCTGGATGGATTTATTATTGTATCCTATAGTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR TCA 90 bp TTCTGTTTCAAAGCCAAGGCCTTCAGGTGGATTCATGGATTCTCCTaGGTTCTTCACAGTTGGATTCATTGGCAAGGAAATTGTGGATGG +
Preference number: 1 (lower is better)
Translates to: FCFKAKAFRWIHGFS*VLHSWIHWQGNCGW
Trigger: CCATCCACAATTTCCTTGCCAATGAATCCAACTGTGAAGAACTCAGGAGAATCCATGAATCCACCTGAAGGCCTTGGCTTTGAAACAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 90 bp ATTCTCCTGAGTTCTTCACAGTTGGATTCATTGGCAAGGAAATTGTaGATGGATCTATTCCACCTCCATGATAACTTTGTGGCTGAGGCT +
Preference number: 1 (lower is better)
Translates to: ILLSSSQLDSLARKL*MDLFHLHDNFVAEA
Trigger: AGCCTCAGCCACAAAGTTATCATGGAGGTGGAATAGATCCATCCACAATTTCCTTGCCAATGAATCCAACTGTGAAGAACTCAGGAGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 90 bp CAAGGAAATTGTGGATGGATCTATTCCACCTCCATGATAACTTTGTaGCTGAGGCTGGAAGAGGAAAAACTACATTTCTCAGAGTGCTTT +
Preference number: 1 (lower is better)
Translates to: QGNCGWIYSTSMITL*LRLEEEKLHFSECF
Trigger: AAAGCACTCTGAGAAATGTAGTTTTTCCTCTTCCAGCCTCAGCCACAAAGTTATCATGGAGGTGGAATAGATCCATCCACAATTTCCTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 90 bp TTTTTAGCAGTTCTGTTTCAAAGCCAAGGCCTTCAGGTGGATTCATaGATTCTCCTGAGTTCTTCACAGTTGGATTCATTGGCAAGGAAA +
Preference number: 1 (lower is better)
Translates to: FLAVLFQSQGLQVDS*ILLSSSQLDSLARK
Trigger: TTTCCTTGCCAATGAATCCAACTGTGAAGAACTCAGGAGAATCCATGAATCCACCTGAAGGCCTTGGCTTTGAAACAGAACTGCTAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR-3UTR TCA 90 bp CCCTCTCCCCCGCAGACGCTGCTCCCACCCTTGCTGCTGCCATATTCGAGGCTTCTGCCAACTGTCGCTTaGGGAGCTGCAGCGCCTCCG +
Preference number: 2 (lower is better)
Translates to: PSPPQTLLPPLLLPYSRLLPTVA*GAAAPP
Trigger: CGGAGGCGCTGCAGCTCCTCAAGCGACAGTTGGCAG...AAGCCTCGAATATGGCAGCAGCAAGGGTGGGAGCAGCGTCTGCGGGGGAGAGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR-3UTR TCA 90 bp GAGGAAACCCACAGTTCTCGGCTTGGAGCACGGGTAGCAAGAGAGGGTGACTCTTGGCCACAGTGGGCCTaGGCAGTCCAGGTCCTCCAT +
Preference number: 2 (lower is better)
Translates to: EETHSSRLGARVAREGDSWPQWA*AVQVLH
Trigger: ATGGAGGACCTGGACTGCTCAGGCCCACTGTGGCCA...AGAGTCACCCTCTCTTGCTACCCGTGCTCCAAGCCGAGAACTGTGGGTTTCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR-3UTR GCA 90 bp TCCGATCCAGCATCTATACCCTGCAAGACTATCGATCCCTGCTGGGGCTCAACTTCTGCCAGCCGCTCCTaGAGGATCTGGGCCCCCTCT +
Preference number: 2 (lower is better)
Translates to: SDPASIPCKTIDPCWGSTSASRS*RIWAPS
Trigger: AGAGGGGGCCCAGATCCTGCAGGAGCGGCTGGCAGA...AGTTGAGCCCCAGCAGGGATCGATAGTCTTGCAGGGTATAGATGCTGGATCGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR-3UTR CCA 90 bp GAGGAAACCCACAGTTCTCGGCTTGGAGCACGGGTAGCAAGAGAGGGTGACTCTCAAGGCTCTTGCTGGTaGTCACAGCCCCAGGAGGCT +
Preference number: 2 (lower is better)
Translates to: EETHSSRLGARVAREGDSQGSCW*SQPQEA
Trigger: AGCCTCCTGGGGCTGTGACCACCAGCAAGAGCCTTG...AGAGTCACCCTCTCTTGCTACCCGTGCTCCAAGCCGAGAACTGTGGGTTTCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR-3UTR TCA 90 bp GAGGAAACCCACAGTTCTCGGCTTGGAGCACGGGTAGCAAGAGAGGGTGACTCTGACAAACAGTTGGCCTaGGGTCTCAGGGTGGCCACA +
Preference number: 2 (lower is better)
Translates to: EETHSSRLGARVAREGDSDKQLA*GLRVAT
Trigger: TGTGGCCACCCTGAGACCTCAGGCCAACTGTTTGTC...AGAGTCACCCTCTCTTGCTACCCGTGCTCCAAGCCGAGAACTGTGGGTTTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR-3UTR TCA 90 bp CCTCCGTGTGTTCCCGCTCGCTGTCCTGAAGGGCCTGAAGCTGCTCCTTCAGTTGTGCTCTGTACCAGATaGTCTCCAAGGCTTTGGCAG +
Preference number: 2 (lower is better)
Translates to: PPCVPARCPEGPEAAPSVVLCTR*SPRLWQ
Trigger: CTGCCAAAGCCTTGGAGATCATCTGGTACAGAGCAC...AACTGAAGGAGCAGCTTCAGGCCCTTCAGGACAGCGAGCGGGAACACACGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR-3UTR GCA 90 bp ATATTTCTCTTCTCGCCAAGGGGACAGGCAGAGTCTCACCTGGATGGATGTCCTGTGGCGGTCAGTCTCTaGCAGCCGCTCCTGCAGGAT +
Preference number: 2 (lower is better)
Translates to: IFLFSPRGQAESHLDGCPVAVSL*QPLLQD
Trigger: ATCCTGCAGGAGCGGCTGGCAGAGACTGACCGCCAC...AGGACATCCATCCAGGTGAGACTCTGCCTGTCCCCTTGGCGAGAAGAGAAATAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR-3UTR GCA 90 bp CAAATACTGACTGACGATGGTGCCAAGGTCCCCAGACAAATGCTCAGAGGACAGTGTCGCTTGAGGAGCTaGAGCGCCTCCGTGTGTTCC +
Preference number: 2 (lower is better)
Translates to: QILTDDGAKVPRQMLRGQCRLRS*SASVCS
Trigger: GGAACACACGGAGGCGCTGCAGCTCCTCAAGCGACA...CTGTCCTCTGAGCATTTGTCTGGGGACCTTGGCACCATCGTCAGTCAGTATTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR CAA 90 bp GACACGGACAATAACTTTCTGGCGTGGATGGTGGCAGCCAGCAGCTaGTGGGGCAGCTGCAAATGGAAGCACCATTCTGGTCACAAGACA +
Preference number: 2 (lower is better)
Translates to: DTDNNFLAWMVAASS*WGSCKWKHHSGHKT
Trigger: TGTCTTGTGACCAGAATGGTGCTTCCATTTGCAGCTGCCCCACAAGCTGCTGGCTGCCACCATCCACGCCAGAAAGTTATTGTCCGTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR-3UTR TCA 90 bp TCCGATCCAGCATCTATACCCTGCAAGACTATCGATCCCTGCTGGGGCTCAACTCATGAATCTTCCCCTTaGGCCTCTCAGACAGGGAGG +
Preference number: 2 (lower is better)
Translates to: SDPASIPCKTIDPCWGSTHESSP*ASQTGR
Trigger: CCTCCCTGTCTGAGAGGCTCAAGGGGAAGATTCATG...AGTTGAGCCCCAGCAGGGATCGATAGTCTTGCAGGGTATAGATGCTGGATCGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR-3UTR TCA 90 bp CACTCCGATCCAGCATCTATACCCTGCAAGACTATCGATCCCTGCTGGGGCTCAAAGTATCCCAGGACCTaGCTGGGACATAGTGACATG +
Preference number: 2 (lower is better)
Translates to: HSDPASIPCKTIDPCWGSKYPRT*LGHSDM
Trigger: CATGTCACTATGTCCCAGTCAGGTCCTGGGATACTT...TGAGCCCCAGCAGGGATCGATAGTCTTGCAGGGTATAGATGCTGGATCGGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR-3UTR GCA 90 bp TCCGATCCAGCATCTATACCCTGCAAGACTATCGATCCCTGCTGGGGCTCAACTTTCCAGATGGTGTACTaGAGGGGGCCTGTGTACTTG +
Preference number: 2 (lower is better)
Translates to: SDPASIPCKTIDPCWGSTFQMVY*RGPVYL
Trigger: CAAGTACACAGGCCCCCTGCAGTACACCATCTGGAA...AGTTGAGCCCCAGCAGGGATCGATAGTCTTGCAGGGTATAGATGCTGGATCGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR-3UTR CCA 90 bp CAAATACTGACTGACGATGGTGCCAAGGTCCCCAGACAAATGCTCAGAGGACAGCCAGTTCCTCCAGCATaGCCTTCTGTCGCTCTCGAA +
Preference number: 2 (lower is better)
Translates to: QILTDDGAKVPRQMLRGQPVPPA*PSVALE
Trigger: TTCGAGAGCGACAGAAGGCCATGCTGGAGGAACTGG...CTGTCCTCTGAGCATTTGTCTGGGGACCTTGGCACCATCGTCAGTCAGTATTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR-3UTR GCA 90 bp TTGTGGATGGATCTATTCCACCTCCATGATAACTTTGTGGCTGAGGCTGGAAGAGTCAGGCAAGGCTCTTaGTGGTGGTCACAGCCCCAG +
Preference number: 2 (lower is better)
Translates to: LWMDLFHLHDNFVAEAGRVRQGS*WWSQPQ
Trigger: CTGGGGCTGTGACCACCAGCAAGAGCCTTGCCTGAC...TCTTCCAGCCTCAGCCACAAAGTTATCATGGAGGTGGAATAGATCCATCCACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR-3UTR GCA 90 bp GGACCTGGGGCAACAAAGGAAGGCCCAGGCTGGGAAGTCATTTTGTCTCTATTTAGCTTGTGGGGCAGCTaGAAATGGAAGCACCATTCT +
Preference number: 2 (lower is better)
Translates to: GPGATKEGPGWEVILSLFSLWGS*KWKHHS
Trigger: AGAATGGTGCTTCCATTTGCAGCTGCCCCACAAGCT...AAATAGAGACAAAATGACTTCCCAGCCTGGGCCTTCCTTTGTTGCCCCAGGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR-3UTR CCA 90 bp GCAGGGACAGAGTCACGGAGCAGGACATTTTTAGCAGTTCTGTTTCAAAGCCAAGGTGGGAGCTGTTCCTaGAAACTCTGGCAAAGGCTG +
Preference number: 2 (lower is better)
Translates to: AGTESRSRTFLAVLFQSQGGSCS*KLWQRL
Trigger: CAGCCTTTGCCAGAGTTTCCAGGAACAGCTCCCACC...TTGGCTTTGAAACAGAACTGCTAAAAATGTCCTGCTCCGTGACTCTGTCCCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR-3UTR CCA 90 bp CAAATACTGACTGACGATGGTGCCAAGGTCCCCAGACAAATGCTCAGAGGACAGAGGCAGAGTCTCACCTaGATGGATGTCCTGGAAAAG +
Preference number: 2 (lower is better)
Translates to: QILTDDGAKVPRQMLRGQRQSLT*MDVLEK
Trigger: CTTTTCCAGGACATCCATCCAGGTGAGACTCTGCCT...CTGTCCTCTGAGCATTTGTCTGGGGACCTTGGCACCATCGTCAGTCAGTATTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR-3UTR CCA 90 bp TTGTGGATGGATCTATTCCACCTCCATGATAACTTTGTGGCTGAGGCTGGAAGAACTTTCTGGCGTGGATaGTGGCAGCCAGCAGCTTGT +
Preference number: 2 (lower is better)
Translates to: LWMDLFHLHDNFVAEAGRTFWRG*WQPAAC
Trigger: ACAAGCTGCTGGCTGCCACCATCCACGCCAGAAAGT...TCTTCCAGCCTCAGCCACAAAGTTATCATGGAGGTGGAATAGATCCATCCACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CAA 90 bp GGAAACTCTGGCAAAGGCTGTCCTCTTCCATCCCTTTCAGTGATCTaGCAAGTCACCAGGGAGCTGACTGCAAATTCTTGTCTGATGAAG +
Preference number: 2 (lower is better)
Translates to: GNSGKGCPLPSLSVI*QVTRELTANSCLMK
Trigger: CTTCATCAGACAAGAATTTGCAGTCAGCTCCCTGGTGACTTGCAAGATCACTGAAAGGGATGGAAGAGGACAGCCTTTGCCAGAGTTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR-3UTR CCA 90 bp TGTGGCATGTGGATGATTGTAGTAAGTATCCCAGGACCTGACTGGGACATAGTGACACCAGGGCCCAGGTaGCAATCCATATTTCTCTTC +
Preference number: 2 (lower is better)
Translates to: CGMWMIVVSIPGPDWDIVTPGPR*QSIFLF
Trigger: GAAGAGAAATATGGATTGCCACCTGGGCCCTGGTGT...CACTATGTCCCAGTCAGGTCCTGGGATACTTACTACAATCATCCACATGCCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR-3UTR TCA 90 bp TCAAAGTCTAGGTTCTGGACTCAAGTTTCCACAAAAAGAATCCCTCTGAAAGATCTGAGAGAATGGGGATaGGGGGTTGGGCAAGGGCTG +
Preference number: 2 (lower is better)
Translates to: SKSRFWTQVSTKRIPLKDLREWG*GVGQGL
Trigger: CAGCCCTTGCCCAACCCCTCATCCCCATTCTCTCAG...ATCTTTCAGAGGGATTCTTTTTGTGGAAACTTGAGTCCAGAACCTAGACTTTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR-3UTR CCA 90 bp TTGTGGATGGATCTATTCCACCTCCATGATAACTTTGTGGCTGAGGCTGGAAGATGTTCCTGGAAACTCTaGCAAAGGCTGTCCTCTTCC +
Preference number: 2 (lower is better)
Translates to: LWMDLFHLHDNFVAEAGRCSWKL*QRLSSS
Trigger: GGAAGAGGACAGCCTTTGCCAGAGTTTCCAGGAACA...TCTTCCAGCCTCAGCCACAAAGTTATCATGGAGGTGGAATAGATCCATCCACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CAA 90 bp CAAGGCCTTCAGGTGGATTCATGGATTCTCCTGAGTTCTTCACAGTaGGATTCATTGGCAAGGAAATTGTGGATGGATCTATTCCACCTC +
Preference number: 2 (lower is better)
Translates to: QGLQVDSWILLSSSQ*DSLARKLWMDLFHL
Trigger: GAGGTGGAATAGATCCATCCACAATTTCCTTGCCAATGAATCCAACTGTGAAGAACTCAGGAGAATCCATGAATCCACCTGAAGGCCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR-3UTR GCA 90 bp TCAAAGTCTAGGTTCTGGACTCAAGTTTCCACAAAAAGAATCCCTCTGAAAGATGCATCAACCACGGAGTaGAATCTCCAGCTCGCAGAA +
Preference number: 2 (lower is better)
Translates to: SKSRFWTQVSTKRIPLKDASTTE*NLQLAE
Trigger: TTCTGCGAGCTGGAGATTGCACTCCGTGGTTGATGC...ATCTTTCAGAGGGATTCTTTTTGTGGAAACTTGAGTCCAGAACCTAGACTTTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR-3UTR GCA 90 bp AAAGGAAGGCCCAGGCTGGGAAGTCATTTTGTCTCTATTTCTGATGCTACTGATTGGATCATCCATTGGTaGTTTGTCCTGATGGTGTTC +
Preference number: 2 (lower is better)
Translates to: KGRPRLGSHFVSISDATDWIIHW*FVLMVF
Trigger: GAACACCATCAGGACAAAGCACCAATGGATGATCCA...ATCAGTAGCATCAGAAATAGAGACAAAATGACTTCCCAGCCTGGGCCTTCCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR-3UTR CCA 90 bp AGTTGGATTCATTGGCAAGGAAATTGTGGATGGATCTATTCCACCTCCATGATAGGGCTGTTGGGGACTTaGATCATCCATTGGTGCTTT +
Preference number: 2 (lower is better)
Translates to: SWIHWQGNCGWIYSTSMIGLLGT*IIHWCF
Trigger: AAAGCACCAATGGATGATCCAAGTCCCCAACAGCCC...TATCATGGAGGTGGAATAGATCCATCCACAATTTCCTTGCCAATGAATCCAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CAA 90 bp TGGATTCTCCTGAGTTCTTCACAGTTGGATTCATTGGCAAGGAAATaGTGGATGGATCTATTCCACCTCCATGATAACTTTGTGGCTGAG +
Preference number: 2 (lower is better)
Translates to: WILLSSSQLDSLARK*WMDLFHLHDNFVAE
Trigger: CTCAGCCACAAAGTTATCATGGAGGTGGAATAGATCCATCCACAATTTCCTTGCCAATGAATCCAACTGTGAAGAACTCAGGAGAATCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CAA 90 bp CAGGTGGATTCATGGATTCTCCTGAGTTCTTCACAGTTGGATTCATaGGCAAGGAAATTGTGGATGGATCTATTCCACCTCCATGATAAC +
Preference number: 2 (lower is better)
Translates to: QVDSWILLSSSQLDS*ARKLWMDLFHLHDN
Trigger: GTTATCATGGAGGTGGAATAGATCCATCCACAATTTCCTTGCCAATGAATCCAACTGTGAAGAACTCAGGAGAATCCATGAATCCACCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR-3UTR TCA 90 bp AGTTGGATTCATTGGCAAGGAAATTGTGGATGGATCTATTCCACCTCCATGATAGGTAGCAAGAGAGGGTaGCTCTCAAATAATCCAGCT +
Preference number: 2 (lower is better)
Translates to: SWIHWQGNCGWIYSTSMIGSKRG*LSNNPA
Trigger: AGCTGGATTATTTGAGAGTCACCCTCTCTTGCTACC...TATCATGGAGGTGGAATAGATCCATCCACAATTTCCTTGCCAATGAATCCAACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR-3UTR GCA 90 bp AGTTGGATTCATTGGCAAGGAAATTGTGGATGGATCTATTCCACCTCCATGATATTTCTCAGAGTGCTTTaGAGTCAAAGTCTAGGTTCT +
Preference number: 2 (lower is better)
Translates to: SWIHWQGNCGWIYSTSMIFLRVL*SQSLGS
Trigger: AGAACCTAGACTTTGACTGCAAAGCACTCTGAGAAA...TATCATGGAGGTGGAATAGATCCATCCACAATTTCCTTGCCAATGAATCCAACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR GCA 72 bp GGCCACTCCTGCAAGGAAGGTGTGGCGGTCAGTCTCTaGCAGCCGCTCCTGCAGGATCTGGGCCCCCTCTTG +
Preference number: 3 (lower is better)
Translates to: GHSCKEGVAVSL*QPLLQDLGPLL
Trigger: CAAGAGGGGGCCCAGATCCTGCAGGAGCGGCTGGCAGAGACTGACCGCCACACCTTCCTTGCAGGAGTGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR TCA 72 bp CACAGGCTCCAGCAGCCACCAGCGCTGCTAGAGGGATaGGCAGACCTTGAGGGTGGAGGTTGCCCCATCCCC +
Preference number: 3 (lower is better)
Translates to: HRLQQPPALLEG*ADLEGGGCPIP
Trigger: GGGGATGGGGCAACCTCCACCCTCAAGGTCTGCTCATCCCTCTAGCAGCGCTGGTGGCTGCTGGAGCCTGTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR CCA 72 bp GTGTGCGGGCTGTGTCGGCCTCCAGTTCCTCCAGCATaGCCTTCTGTCGCTCTCGAAGTAGCCGGTGCAGCC +
Preference number: 3 (lower is better)
Translates to: VCGLCRPPVPPA*PSVALEVAGAA
Trigger: GGCTGCACCGGCTACTTCGAGAGCGACAGAAGGCCATGCTGGAGGAACTGGAGGCCGACACAGCCCGCACAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR TCA 72 bp CGCAGAAGGGGAGGAGGAGGGGACAAACAGTTGGCCTaGGGTCTCAGGGTGGCCACAGTGGGCCTGAGCAGT +
Preference number: 3 (lower is better)
Translates to: RRRGGGGDKQLA*GLRVATVGLSS
Trigger: ACTGCTCAGGCCCACTGTGGCCACCCTGAGACCTCAGGCCAACTGTTTGTCCCCTCCTCCTCCCCTTCTGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR GCA 72 bp TCCAGCATGGCCTTCTGTCGCTCTCGAAGTAGCCGGTaGAGCCGCTCAAAGGCTTCCCCGATGGTGGTCCGC +
Preference number: 3 (lower is better)
Translates to: SSMAFCRSRSSR*SRSKASPMVVR
Trigger: GCGGACCACCATCGGGGAAGCCTTTGAGCGGCTGCACCGGCTACTTCGAGAGCGACAGAAGGCCATGCTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 72 bp AGGAAGGTGTGGCGGTCAGTCTCTGCCAGCCGCTCCTaGAGGATCTGGGCCCCCTCTTGCACCTTTCGTAGT +
Preference number: 3 (lower is better)
Translates to: RKVWRSVSASRS*RIWAPSCTFRS
Trigger: ACTACGAAAGGTGCAAGAGGGGGCCCAGATCCTGCAGGAGCGGCTGGCAGAGACTGACCGCCACACCTTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR CCA 72 bp CCAGGTCCTCCATCTGTCAGGCAAGGCTCTTGCTGGTaGTCACAGCCCCAGGAGGCTTTGGTCTCCCTCTGC +
Preference number: 3 (lower is better)
Translates to: PGPPSVRQGSCW*SQPQEALVSLC
Trigger: GCAGAGGGAGACCAAAGCCTCCTGGGGCTGTGACCACCAGCAAGAGCCTTGCCTGACAGATGGAGGACCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR GCA 72 bp CTGATTAATCCCTCCTCCCCTCTCCCCCGCAGACGCTaGTCCCACCCTTGCTGCTGCCATATTCGAGGCTTC +
Preference number: 3 (lower is better)
Translates to: LINPSSPLPRRR*SHPCCCHIRGF
Trigger: GAAGCCTCGAATATGGCAGCAGCAAGGGTGGGAGCAGCGTCTGCGGGGGAGAGGGGAGGAGGGATTAATCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR-3UTR CAA 90 bp CCCATCCCATCGCTCTATCTCACAGCCTCCAATCCCACACGTGTGGCATGTGGATCTGCCAACTGTCGCTaGAGGAGCTGCAGCGCCTCC +
Preference number: 3 (lower is better)
Translates to: PIPSLYLTASNPTRVACGSANCR*RSCSAS
Trigger: GGAGGCGCTGCAGCTCCTCAAGCGACAGTTGGCAGA...TCCACATGCCACACGTGTGGGATTGGAGGCTGTGAGATAGAGCGATGGGATGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 72 bp TCCTCCCCTCTCCCCCGCAGACGCTGCTCCCACCCTTaGTGCTGCCATATTCGAGGCTTCTATGATATGTGC +
Preference number: 3 (lower is better)
Translates to: SSPLPRRRCSHP*CCHIRGFYDMC
Trigger: GCACATATCATAGAAGCCTCGAATATGGCAGCAGCAAGGGTGGGAGCAGCGTCTGCGGGGGAGAGGGGAGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR-3UTR CAA 90 bp CCCTCTCCCCCGCAGACGCTGCTCCCACCCTTGCTGCTGCCATATTCGAGGCTTCTAATGAGCCAGGCCTaGGGAATTCCTAGAAGCTTG +
Preference number: 3 (lower is better)
Translates to: PSPPQTLLPPLLLPYSRLLMSQA*GIPRSL
Trigger: CAAGCTTCTAGGAATTCCCAAGGCCTGGCTCATTAG...AAGCCTCGAATATGGCAGCAGCAAGGGTGGGAGCAGCGTCTGCGGGGGAGAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR CCA 72 bp TGTGGTGTGGTGGGACAGACACGGACAATAACTTTCTaGCGTGGATGGTGGCAGCCAGCAGCTTGTGGGGCA +
Preference number: 3 (lower is better)
Translates to: CGVVGQTRTITF*RGWWQPAACGA
Trigger: TGCCCCACAAGCTGCTGGCTGCCACCATCCACGCCAGAAAGTTATTGTCCGTGTCTGTCCCACCACACCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 72 bp CTTCCTGCTCTGCCACCTGTCACACCAGGGCCCAGGTaGCAATCCATATTTCTCTTCTCGCCAAGGGGACAG +
Preference number: 3 (lower is better)
Translates to: LPALPPVTPGPR*QSIFLFSPRGQ
Trigger: CTGTCCCCTTGGCGAGAAGAGAAATATGGATTGCCACCTGGGCCCTGGTGTGACAGGTGGCAGAGCAGGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR-3UTR CAA 90 bp CACTCCGATCCAGCATCTATACCCTGCAAGACTATCGATCCCTGCTGGGGCTCAGTGGTCCGCAGGCTCTaGGTAGAGGACTTGGTCTCT +
Preference number: 3 (lower is better)
Translates to: HSDPASIPCKTIDPCWGSVVRRL*VEDLVS
Trigger: AGAGACCAAGTCCTCTACCAAGAGCCTGCGGACCAC...TGAGCCCCAGCAGGGATCGATAGTCTTGCAGGGTATAGATGCTGGATCGGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR-3UTR CAA 90 bp CAAGGGGACAGGCAGAGTCTCACCTGGATGGATGTCCTGGAAAAGCGATTTCCAAGGGGGCCTGTGTACTaGGAGGTCGGGAAGTCTTCG +
Preference number: 3 (lower is better)
Translates to: QGDRQSLTWMDVLEKRFPRGPVY*EVGKSS
Trigger: CGAAGACTTCCCGACCTCCAAGTACACAGGCCCCCT...TGGAAATCGCTTTTCCAGGACATCCATCCAGGTGAGACTCTGCCTGTCCCCTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 72 bp GCGTGGATGGTGGCAGCCAGCAGCTTGTGGGGCAGCTaGAAATGGAAGCACCATTCTGGTCACAAGACACAA +
Preference number: 3 (lower is better)
Translates to: AWMVAASSLWGS*KWKHHSGHKTQ
Trigger: TTGTGTCTTGTGACCAGAATGGTGCTTCCATTTGCAGCTGCCCCACAAGCTGCTGGCTGCCACCATCCACGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 72 bp GGACAGACACGGACAATAACTTTCTGGCGTGGATGGTaGCAGCCAGCAGCTTGTGGGGCAGCTGCAAATGGA +
Preference number: 3 (lower is better)
Translates to: GQTRTITFWRGW*QPAACGAAANG
Trigger: TCCATTTGCAGCTGCCCCACAAGCTGCTGGCTGCCACCATCCACGCCAGAAAGTTATTGTCCGTGTCTGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 72 bp ACCCTGCAAGACTATCGATCCCTGCTGGGGCTCAACTaGGGACATCCTGAGGTGACCTTCACGCCTTTTGGA +
Preference number: 3 (lower is better)
Translates to: TLQDYRSLLGLN*GHPEVTFTPFG
Trigger: TCCAAAAGGCGTGAAGGTCACCTCAGGATGTCCCCAGTTGAGCCCCAGCAGGGATCGATAGTCTTGCAGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR TCA 72 bp GGTACAGCCAAGTGTGGTGTCTTGGAGGGCTTTGACTaGTGGGGTGAGGCACCTATGACAGGGATGGAACAG +
Preference number: 3 (lower is better)
Translates to: GTAKCGVLEGFD*WGEAPMTGMEQ
Trigger: CTGTTCCATCCCTGTCATAGGTGCCTCACCCCATCAGTCAAAGCCCTCCAAGACACCACACTTGGCTGTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR-3UTR CAA 90 bp GGGCCCCCTCTTGCACCTTTCGTAGTTGCTGGCTGTAACGCTGGACCTTCTGCTGGAATTCCTAGAAGCTaGTCTTCCCCTCCTCCAAAT +
Preference number: 3 (lower is better)
Translates to: GPPLAPFVVAGCNAGPSAGIPRS*SSPPPN
Trigger: ATTTGGAGGAGGGGAAGACAAGCTTCTAGGAATTCC...AGCAGAAGGTCCAGCGTTACAGCCAGCAACTACGAAAGGTGCAAGAGGGGGCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR TCA 72 bp GAGATGGACATGCTCACTGAATCCCAAGTACAGAATTaGGGACCTGGGGCAACAAAGGAAGGCCCAGGCTGG +
Preference number: 3 (lower is better)
Translates to: EMDMLTESQVQN*GPGATKEGPGW
Trigger: CCAGCCTGGGCCTTCCTTTGTTGCCCCAGGTCCTCAATTCTGTACTTGGGATTCAGTGAGCATGTCCATCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR TCA 72 bp TCTTGGAGGGCTTTGACTGATGGGGTGAGGCACCTATaGCAGGGATGGAACAGACAGCAGCAAGGCAGAAAG +
Preference number: 3 (lower is better)
Translates to: SWRALTDGVRHL*QGWNRQQQGRK
Trigger: CTTTCTGCCTTGCTGCTGTCTGTTCCATCCCTGTCATAGGTGCCTCACCCCATCAGTCAAAGCCCTCCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 72 bp TGGATGTCCTGGAAAAGCGATTTCCAGATGGTGTACTaGAGGGGGCCTGTGTACTTGGAGGTCGGGAAGTCT +
Preference number: 3 (lower is better)
Translates to: WMSWKSDFQMVY*RGPVYLEVGKS
Trigger: AGACTTCCCGACCTCCAAGTACACAGGCCCCCTGCAGTACACCATCTGGAAATCGCTTTTCCAGGACATCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR CCA 72 bp CAGCTTGTGGGGCAGCTGCAAATGGAAGCACCATTCTaGTCACAAGACACAAACCCTCTAGATGGTGGGAGC +
Preference number: 3 (lower is better)
Translates to: QLVGQLQMEAPF*SQDTNPLDGGS
Trigger: GCTCCCACCATCTAGAGGGTTTGTGTCTTGTGACCAGAATGGTGCTTCCATTTGCAGCTGCCCCACAAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR TCA 72 bp TCGGTTCTCCATCTGTCAAGTGTGCTCTGTACCAGATaGTCTCCAAGGCTTTGGCAGCGTCTCCGTCATTCC +
Preference number: 3 (lower is better)
Translates to: SVLHLSSVLCTR*SPRLWQRLRHS
Trigger: GGAATGACGGAGACGCTGCCAAAGCCTTGGAGATCATCTGGTACAGAGCACACTTGACAGATGGAGAACCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR CCA 72 bp CAAGACACAAACCCTCTAGATGGTGGGAGCTGTTCCTaGAAACTCTGGCAAAGGCTGTCCTCTTCCATCCCT +
Preference number: 3 (lower is better)
Translates to: QDTNPLDGGSCS*KLWQRLSSSIP
Trigger: AGGGATGGAAGAGGACAGCCTTTGCCAGAGTTTCCAGGAACAGCTCCCACCATCTAGAGGGTTTGTGTCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 72 bp TTCTCTTCTCGCCAAGGGGACAGGCAGAGTCTCACCTaGATGGATGTCCTGGAAAAGCGATTTCCAGATGGT +
Preference number: 3 (lower is better)
Translates to: FSSRQGDRQSLT*MDVLEKRFPDG
Trigger: ACCATCTGGAAATCGCTTTTCCAGGACATCCATCCAGGTGAGACTCTGCCTGTCCCCTTGGCGAGAAGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR TCA 72 bp GGATACAATAATAAATCCATCCAGGTGGATGGACTCTaGCTCCTGTCCCTCCACTTGGGGAACAGGCACAGC +
Preference number: 3 (lower is better)
Translates to: GYNNKSIQVDGL*LLSLHLGNRHS
Trigger: GCTGTGCCTGTTCCCCAAGTGGAGGGACAGGAGTCAGAGTCCATCCACCTGGATGGATTTATTATTGTATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 72 bp CTCCTTCAGTTCTCTCGGTTCTCCATCTGTCAAGTGTaGTCTGTACCAGATGATCTCCAAGGCTTTGGCAGC +
Preference number: 3 (lower is better)
Translates to: LLQFSRFSICQV*SVPDDLQGFGS
Trigger: GCTGCCAAAGCCTTGGAGATCATCTGGTACAGAGCACACTTGACAGATGGAGAACCGAGAGAACTGAAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR CCA 72 bp AACCCTCTAGATGGTGGGAGCTGTTCCTGGAAACTCTaGCAAAGGCTGTCCTCTTCCATCCCTTTCAGTGAT +
Preference number: 3 (lower is better)
Translates to: NPLDGGSCSWKL*QRLSSSIPFSD
Trigger: ATCACTGAAAGGGATGGAAGAGGACAGCCTTTGCCAGAGTTTCCAGGAACAGCTCCCACCATCTAGAGGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 72 bp CTATCTCACAGCCTCCAATCCCACACGTGTGGCATGTaGATGATTGTAGTAAGTATCCCAGGACCTGACTGG +
Preference number: 3 (lower is better)
Translates to: LSHSLQSHTCGM*MIVVSIPGPDW
Trigger: CCAGTCAGGTCCTGGGATACTTACTACAATCATCCACATGCCACACGTGTGGGATTGGAGGCTGTGAGATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR CCA 72 bp CATCGCTCTATCTCACAGCCTCCAATCCCACACGTGTaGCATGTGGATGATTGTAGTAAGTATCCCAGGACC +
Preference number: 3 (lower is better)
Translates to: HRSISQPPIPHV*HVDDCSKYPRT
Trigger: GGTCCTGGGATACTTACTACAATCATCCACATGCCACACGTGTGGGATTGGAGGCTGTGAGATAGAGCGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR TCA 72 bp CTCCCACCCTTGCTGCTGCCATATTCGAGGCTTCTATaGTATGTGCACATCTCATGTCAGAGCGCTTATCCT +
Preference number: 3 (lower is better)
Translates to: LPPLLLPYSRLL*YVHISCQSAYP
Trigger: AGGATAAGCGCTCTGACATGAGATGTGCACATATCATAGAAGCCTCGAATATGGCAGCAGCAAGGGTGGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR CCA 72 bp AAGCAGTTAAAGAACAGGACAGAACAGAACATAGGCTaGCACTCTGCTCACTTCCTGCTCTGCCACCTGTCA +
Preference number: 3 (lower is better)
Translates to: KQLKNRTEQNIG*HSAHFLLCHLS
Trigger: TGACAGGTGGCAGAGCAGGAAGTGAGCAGAGTGCCAGCCTATGTTCTGTTCTGTCCTGTTCTTTAACTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR GCA 72 bp CCTCAAGTTCATATTCTGGCTCACCGGAGATGGACATaGTCACTGAATCCCAAGTACAGAATTGAGGACCTG +
Preference number: 3 (lower is better)
Translates to: PQVHILAHRRWT*SLNPKYRIEDL
Trigger: CAGGTCCTCAATTCTGTACTTGGGATTCAGTGAGCATGTCCATCTCCGGTGAGCCAGAATATGAACTTGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR TCA 72 bp AAAGCCAAGGCCTTCAGGTGGATTCATGGATTCTCCTaGGTTCTTCACAGTTGGATTCATTGGCAAGGAAAT +
Preference number: 3 (lower is better)
Translates to: KAKAFRWIHGFS*VLHSWIHWQGN
Trigger: ATTTCCTTGCCAATGAATCCAACTGTGAAGAACTCAGGAGAATCCATGAATCCACCTGAAGGCCTTGGCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 72 bp TGTGGATGGATCTATTCCACCTCCATGATAACTTTGTaGCTGAGGCTGGAAGAGGAAAAACTACATTTCTCA +
Preference number: 3 (lower is better)
Translates to: CGWIYSTSMITL*LRLEEEKLHFS
Trigger: TGAGAAATGTAGTTTTTCCTCTTCCAGCCTCAGCCACAAAGTTATCATGGAGGTGGAATAGATCCATCCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 72 bp CTTCACAGTTGGATTCATTGGCAAGGAAATTGTGGATaGATCTATTCCACCTCCATGATAACTTTGTGGCTG +
Preference number: 3 (lower is better)
Translates to: LHSWIHWQGNCG*IYSTSMITLWL
Trigger: CAGCCACAAAGTTATCATGGAGGTGGAATAGATCCATCCACAATTTCCTTGCCAATGAATCCAACTGTGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CCA 72 bp AGTTCTTCACAGTTGGATTCATTGGCAAGGAAATTGTaGATGGATCTATTCCACCTCCATGATAACTTTGTG +
Preference number: 3 (lower is better)
Translates to: SSSQLDSLARKL*MDLFHLHDNFV
Trigger: CACAAAGTTATCATGGAGGTGGAATAGATCCATCCACAATTTCCTTGCCAATGAATCCAACTGTGAAGAACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR TCA 90 bp GGTCCTCCATCTGTCAGGCAAGGCTCTTGCTGGTGGTCACAGCCCCAGGAGGCTCGATGTTGGCCAGCTTaGGGCTGGGCGCGAGCGCGG +
Preference number: 4 (lower is better)
Translates to: GPPSVRQGSCWWSQPQEARCWPA*GWARAR
Trigger: CCGCGCTCGCGCCCAGCCTCAAGCTGGCCAACATCG...AGCCTCCTGGGGCTGTGACCACCAGCAAGAGCCTTGCCTGACAGATGGAGGACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR TCA 90 bp AGTTCCTCCAGCATGGCCTTCTGTCGCTCTCGAAGTAGCCGGTGCAGCCGCTCACGGCTCGGCGCGCGTTaGGGATGGCGTCCAGCGGGA +
Preference number: 4 (lower is better)
Translates to: SSSSMAFCRSRSSRCSRSRLGAR*GWRPAG
Trigger: TCCCGCTGGACGCCATCCTCAACGCGCGCCGAGCCG...TGAGCGGCTGCACCGGCTACTTCGAGAGCGACAGAAGGCCATGCTGGAGGAACT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS-3UTR GCA 90 bp GGTCCTCCATCTGTCAGGCAAGGCTCTTGCTGGTGGTCACAGCCCCAGGAGGCTTCTGCCAGCCGCTCCTaGAGGATCTGGGCCCCCTCT +
Preference number: 4 (lower is better)
Translates to: GPPSVRQGSCWWSQPQEASASRS*RIWAPS
Trigger: AGAGGGGGCCCAGATCCTGCAGGAGCGGCTGGCAGA...AGCCTCCTGGGGCTGTGACCACCAGCAAGAGCCTTGCCTGACAGATGGAGGACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp GAAGGGGAGGAGGAGGGGACAAACAGTTGGCCTGAGGTCTCAGGGTGGCCACAGGACAGGATCAGGCGCTaGTGGGCAGTGCCTGGGTCC +
Preference number: 4 (lower is better)
Translates to: EGEEEGTNSWPEVSGWPQDRIRR*WAVPGS
Trigger: GGACCCAGGCACTGCCCACCAGCGCCTGATCCTGTC...CTGTGGCCACCCTGAGACCTCAGGCCAACTGTTTGTCCCCTCCTCCTCCCCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR GCA 90 bp CATCTGTCAGGCAAGGCTCTTGCTGGTGGTCACAGCCCCAGGAGGCTTTGGTCTGGCGCTGGTGGGCAGTaGCTGGGTCCATGGTCAGGG +
Preference number: 4 (lower is better)
Translates to: HLSGKALAGGHSPRRLWSGAGGQ*LGPWSG
Trigger: CCCTGACCATGGACCCAGGCACTGCCCACCAGCGCC...AGACCAAAGCCTCCTGGGGCTGTGACCACCAGCAAGAGCCTTGCCTGACAGATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR TCA 90 bp CACTCCGATCCAGCATCTATACCCTGCAAGACTATCGATCCCTGCTGGGGCTCACGATGTTGGCCAGCTTaGGGCTGGGCGCGAGCGCGG +
Preference number: 4 (lower is better)
Translates to: HSDPASIPCKTIDPCWGSRCWPA*GWARAR
Trigger: CCGCGCTCGCGCCCAGCCTCAAGCTGGCCAACATCG...TGAGCCCCAGCAGGGATCGATAGTCTTGCAGGGTATAGATGCTGGATCGGAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS-3UTR TCA 90 bp GGCAGGAGGAGGGGAACAGAGAGCTTCCCTGTTCCTGAGAGAATGGGGATGAGGGGCTCTGGCCGGGGCTaGAGTAGGAGCAGAGCTTGC +
Preference number: 4 (lower is better)
Translates to: GRRRGTESFPVPERMGMRGSGRG*SRSRAC
Trigger: GCAAGCTCTGCTCCTACTTCAGCCCCGGCCAGAGCC...CCTCATCCCCATTCTCTCAGGAACAGGGAAGCTCTCTGTTCCCCTCCTCCTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp GGTCCTCCATCTGTCAGGCAAGGCTCTTGCTGGTGGTCACAGCCCCAGGAGGCTCAAAGGCTTCCCCGATaGTGGTCCGCAGGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: GPPSVRQGSCWWSQPQEAQRLPR*WSAGSW
Trigger: CCAAGAGCCTGCGGACCACCATCGGGGAAGCCTTTG...AGCCTCCTGGGGCTGTGACCACCAGCAAGAGCCTTGCCTGACAGATGGAGGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp GAAGGGGAGGAGGAGGGGACAAACAGTTGGCCTGAGGTCTCAGGGTGGCCACAGTTCTTGCCATTGGCGTaGCTCTGGCCGGGGCTGAAG +
Preference number: 4 (lower is better)
Translates to: EGEEEGTNSWPEVSGWPQFLPLA*LWPGLK
Trigger: CTTCAGCCCCGGCCAGAGCCACGCCAATGGCAAGAA...CTGTGGCCACCCTGAGACCTCAGGCCAACTGTTTGTCCCCTCCTCCTCCCCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR TCA 90 bp GAGGAAACCCACAGTTCTCGGCTTGGAGCACGGGTAGCAAGAGAGGGTGACTCTCTGCCAACTGTCGCTTaGGGAGCTGCAGCGCCTCCG +
Preference number: 4 (lower is better)
Translates to: EETHSSRLGARVAREGDSLPTVA*GAAAPP
Trigger: CGGAGGCGCTGCAGCTCCTCAAGCGACAGTTGGCAG...AGAGTCACCCTCTCTTGCTACCCGTGCTCCAAGCCGAGAACTGTGGGTTTCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR TCA 90 bp GAAGGGGAGGAGGAGGGGACAAACAGTTGGCCTGAGGTCTCAGGGTGGCCACAGAGATGCGGACGGTGTTaGTCCGCAGTGGTTGGACGT +
Preference number: 4 (lower is better)
Translates to: EGEEEGTNSWPEVSGWPQRCGRC*SAVVGR
Trigger: ACGTCCAACCACTGCGGATCAACACCGTCCGCATCT...CTGTGGCCACCCTGAGACCTCAGGCCAACTGTTTGTCCCCTCCTCCTCCCCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR GCA 90 bp CCAGTTCCTCCAGCATGGCCTTCTGTCGCTCTCGAAGTAGCCGGTGCAGCCGCTGAAGAAGCAGAGCAGTaGGCGGTCCGTGAGGCAGAA +
Preference number: 4 (lower is better)
Translates to: PVPPAWPSVALEVAGAAAEEAEQ*AVREAE
Trigger: TTCTGCCTCACGGACCGCGCACTGCTCTGCTTCTTC...AGCGGCTGCACCGGCTACTTCGAGAGCGACAGAAGGCCATGCTGGAGGAACTGG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS-3UTR GCA 90 bp TCAACCACGGAGTGCAATCTCCAGCTCGCAGAAGGGGAGGAGGAGGGGACAAACGTGGCGGTCAGTCTCTaGCAGCCGCTCCTGCAGGAT +
Preference number: 4 (lower is better)
Translates to: STTECNLQLAEGEEEGTNVAVSL*QPLLQD
Trigger: ATCCTGCAGGAGCGGCTGGCAGAGACTGACCGCCAC...GTTTGTCCCCTCCTCCTCCCCTTCTGCGAGCTGGAGATTGCACTCCGTGGTTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp AGTTCCTCCAGCATGGCCTTCTGTCGCTCTCGAAGTAGCCGGTGCAGCCGCTCATCGATGCCAGTGACCTaGTGTTGCTCGTGCAGCGCG +
Preference number: 4 (lower is better)
Translates to: SSSSMAFCRSRSSRCSRSSMPVT*CCSCSA
Trigger: CGCGCTGCACGAGCAACACCAGGTCACTGGCATCGA...TGAGCGGCTGCACCGGCTACTTCGAGAGCGACAGAAGGCCATGCTGGAGGAACT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS-3UTR CCA 90 bp GGTCCTCCATCTGTCAGGCAAGGCTCTTGCTGGTGGTCACAGCCCCAGGAGGCTCATGGTCAGGGCAGCTaGCACTGGATGGATGTCCTG +
Preference number: 4 (lower is better)
Translates to: GPPSVRQGSCWWSQPQEAHGQGS*HWMDVL
Trigger: CAGGACATCCATCCAGTGCCAGCTGCCCTGACCATG...AGCCTCCTGGGGCTGTGACCACCAGCAAGAGCCTTGCCTGACAGATGGAGGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CAA 72 bp GAGCAGTCCAGGTCCTCCATCTGTCAGGCAAGGCTCTaGCTGGTGGTCACAGCCCCAGGAGGCTTTGGTCTC +
Preference number: 4 (lower is better)
Translates to: EQSRSSICQARL*LVVTAPGGFGL
Trigger: GAGACCAAAGCCTCCTGGGGCTGTGACCACCAGCAAGAGCCTTGCCTGACAGATGGAGGACCTGGACTGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CAA 72 bp CTCTTGGTAGAGGACTTGGTCTCTGCCAACTGTCGCTaGAGGAGCTGCAGCGCCTCCGTGTGTTCCCGCTCG +
Preference number: 4 (lower is better)
Translates to: LLVEDLVSANCR*RSCSASVCSRS
Trigger: CGAGCGGGAACACACGGAGGCGCTGCAGCTCCTCAAGCGACAGTTGGCAGAGACCAAGTCCTCTACCAAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS-3UTR TCA 90 bp AGTTCCTCCAGCATGGCCTTCTGTCGCTCTCGAAGTAGCCGGTGCAGCCGCTCACATCGTCGATGCCAGTaGCCTGGTGTTGCTCGTGCA +
Preference number: 4 (lower is better)
Translates to: SSSSMAFCRSRSSRCSRSHRRCQ*PGVARA
Trigger: TGCACGAGCAACACCAGGTCACTGGCATCGACGATG...TGAGCGGCTGCACCGGCTACTTCGAGAGCGACAGAAGGCCATGCTGGAGGAACT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS-3UTR TCA 90 bp GAAGGGGAGGAGGAGGGGACAAACAGTTGGCCTGAGGTCTCAGGGTGGCCACAGCATGAATCTTCCCCTTaGGCCTCTCAGACAGGGAGG +
Preference number: 4 (lower is better)
Translates to: EGEEEGTNSWPEVSGWPQHESSP*ASQTGR
Trigger: CCTCCCTGTCTGAGAGGCTCAAGGGGAAGATTCATG...CTGTGGCCACCCTGAGACCTCAGGCCAACTGTTTGTCCCCTCCTCCTCCCCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR GCA 90 bp GGCAGGAGGAGGGGAACAGAGAGCTTCCCTGTTCCTGAGAGAATGGGGATGAGGTGTCGCTTGAGGAGCTaGAGCGCCTCCGTGTGTTCC +
Preference number: 4 (lower is better)
Translates to: GRRRGTESFPVPERMGMRCRLRS*SASVCS
Trigger: GGAACACACGGAGGCGCTGCAGCTCCTCAAGCGACA...CCTCATCCCCATTCTCTCAGGAACAGGGAAGCTCTCTGTTCCCCTCCTCCTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR GCA 90 bp GAAGGGGAGGAGGAGGGGACAAACAGTTGGCCTGAGGTCTCAGGGTGGCCACAGATCTGGGCCCCCTCTTaGACCTTTCGTAGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: EGEEEGTNSWPEVSGWPQIWAPS*TFRSCW
Trigger: CCAGCAACTACGAAAGGTGCAAGAGGGGGCCCAGAT...CTGTGGCCACCCTGAGACCTCAGGCCAACTGTTTGTCCCCTCCTCCTCCCCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR GCA 90 bp GAAGGGGAGGAGGAGGGGACAAACAGTTGGCCTGAGGTCTCAGGGTGGCCACAGCGCTTTGGTGAGTCCTaGAGTGGTTGTGGGTGTAGG +
Preference number: 4 (lower is better)
Translates to: EGEEEGTNSWPEVSGWPQRFGES*SGCGCR
Trigger: CCTACACCCACAACCACTGCAGGACTCACCAAAGCG...CTGTGGCCACCCTGAGACCTCAGGCCAACTGTTTGTCCCCTCCTCCTCCCCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp CCAGCAGCTTGTGGGGCAGCTGCAAATGGAAGCACCATTCTGGTCACAAGACACGGACGTTCTTGCCATTaGCGTGGCTCTGGCCGGGGC +
Preference number: 4 (lower is better)
Translates to: PAACGAAANGSTILVTRHGRSCH*RGSGRG
Trigger: GCCCCGGCCAGAGCCACGCCAATGGCAAGAACGTCC...GTGTCTTGTGACCAGAATGGTGCTTCCATTTGCAGCTGCCCCACAAGCTGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp TCATTCCCCAGGATAGGGGCCTCAGCACAGGCTCCAGCAGCCACCAGCGCTGCTGGTTCCACTCTCAATTaGCCCCTGCAACTCCTCGAA +
Preference number: 4 (lower is better)
Translates to: SFPRIGASAQAPAATSAAGSTLN*PLQLLE
Trigger: TTCGAGGAGTTGCAGGGGCCAATTGAGAGTGGAACC...AGCAGCGCTGGTGGCTGCTGGAGCCTGTGCTGAGGCCCCTATCCTGGGGAATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
3UTR CAA 72 bp CGCTCAAAGGCTTCCCCGATGGTGGTCCGCAGGCTCTaGGTAGAGGACTTGGTCTCTGCCAACTGTCGCTTG +
Preference number: 4 (lower is better)
Translates to: RSKASPMVVRRL*VEDLVSANCRL
Trigger: CAAGCGACAGTTGGCAGAGACCAAGTCCTCTACCAAGAGCCTGCGGACCACCATCGGGGAAGCCTTTGAGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS-3UTR TCA 90 bp GCAGGGACAGAGTCACGGAGCAGGACATTTTTAGCAGTTCTGTTTCAAAGCCAACGGCTCGGCGCGCGTTaGGGATGGCGTCCAGCGGGA +
Preference number: 4 (lower is better)
Translates to: AGTESRSRTFLAVLFQSQRLGAR*GWRPAG
Trigger: TCCCGCTGGACGCCATCCTCAACGCGCGCCGAGCCG...TTGGCTTTGAAACAGAACTGCTAAAAATGTCCTGCTCCGTGACTCTGTCCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR GCA 90 bp GAAGGGGAGGAGGAGGGGACAAACAGTTGGCCTGAGGTCTCAGGGTGGCCACAGAGAGGACTTGGTCTCTaGCAACTGTCGCTTGAGGAG +
Preference number: 4 (lower is better)
Translates to: EGEEEGTNSWPEVSGWPQRGLGL*QLSLEE
Trigger: CTCCTCAAGCGACAGTTGGCAGAGACCAAGTCCTCT...CTGTGGCCACCCTGAGACCTCAGGCCAACTGTTTGTCCCCTCCTCCTCCCCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR GCA 90 bp GAAGGGGAGGAGGAGGGGACAAACAGTTGGCCTGAGGTCTCAGGGTGGCCACAGTTCCAGATGGTGTACTaGAGGGGGCCTGTGTACTTG +
Preference number: 4 (lower is better)
Translates to: EGEEEGTNSWPEVSGWPQFQMVY*RGPVYL
Trigger: CAAGTACACAGGCCCCCTGCAGTACACCATCTGGAA...CTGTGGCCACCCTGAGACCTCAGGCCAACTGTTTGTCCCCTCCTCCTCCCCTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR GCA 90 bp GGCAGGAGGAGGGGAACAGAGAGCTTCCCTGTTCCTGAGAGAATGGGGATGAGGGTGGTTGGACGTTCTTaGCATTGGCGTGGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: GRRRGTESFPVPERMGMRVVGRS*HWRGSG
Trigger: GCCAGAGCCACGCCAATGGCAAGAACGTCCAACCAC...CCTCATCCCCATTCTCTCAGGAACAGGGAAGCTCTCTGTTCCCCTCCTCCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp AGGCGGCTATTGTTTGTGCCTCAGGATCCTAAGGGAGCCAGATGTCAAGTCCAGCTGGTGGGCAGTGCCTaGGTCCATGGTCAGGGCAGC +
Preference number: 4 (lower is better)
Translates to: RRLLFVPQDPKGARCQVQLVGSA*VHGQGS
Trigger: GCTGCCCTGACCATGGACCCAGGCACTGCCCACCAG...CTGGACTTGACATCTGGCTCCCTTAGGATCCTGAGGCACAAACAATAGCCGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp AGGTCCTCCATCTGTCAGGCAAGGCTCTTGCTGGTGGTCACAGCCCCAGGAGGCGTGCAGGCGCTGTACTaGTTACCGTCATGCATAACG +
Preference number: 4 (lower is better)
Translates to: RSSICQARLLLVVTAPGGVQALY*LPSCIT
Trigger: CGTTATGCATGACGGTAACCAGTACAGCGCCTGCAC...GCCTCCTGGGGCTGTGACCACCAGCAAGAGCCTTGCCTGACAGATGGAGGACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR GCA 90 bp GGTCCTCCATCTGTCAGGCAAGGCTCTTGCTGGTGGTCACAGCCCCAGGAGGCTTCCTTCAGTTCTCTCTaGAACTCCTCGAAGGCATCG +
Preference number: 4 (lower is better)
Translates to: GPPSVRQGSCWWSQPQEASFSSL*NSSKAS
Trigger: CGATGCCTTCGAGGAGTTGCAGAGAGAACTGAAGGA...AGCCTCCTGGGGCTGTGACCACCAGCAAGAGCCTTGCCTGACAGATGGAGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp GGGCCCCCTCTTGCACCTTTCGTAGTTGCTGGCTGTAACGCTGGACCTTCTGCTAGATGCTCAGGCAGATaGAGCACAGCAGCTCGTCCT +
Preference number: 4 (lower is better)
Translates to: GPPLAPFVVAGCNAGPSARCSGR*STAARP
Trigger: AGGACGAGCTGCTGTGCTCCATCTGCCTGAGCATCT...AGCAGAAGGTCCAGCGTTACAGCCAGCAACTACGAAAGGTGCAAGAGGGGGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS-3UTR CCA 90 bp AGGCGGCTATTGTTTGTGCCTCAGGATCCTAAGGGAGCCAGATGTCAAGTCCAGAGCCCAATCACCCACTaGGTCTTCTCCGCCACCACC +
Preference number: 4 (lower is better)
Translates to: RRLLFVPQDPKGARCQVQSPITH*VFSATT
Trigger: GGTGGTGGCGGAGAAGACCCAGTGGGTGATTGGGCT...CTGGACTTGACATCTGGCTCCCTTAGGATCCTGAGGCACAAACAATAGCCGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR TCA 90 bp GCAGGGACAGAGTCACGGAGCAGGACATTTTTAGCAGTTCTGTTTCAAAGCCAAAGCTTGACCTTGTCGTaGGCCTGGCAGGGTCGCGCG +
Preference number: 4 (lower is better)
Translates to: AGTESRSRTFLAVLFQSQSLTLS*AWQGRA
Trigger: CGCGCGACCCTGCCAGGCTCACGACAAGGTCAAGCT...TTGGCTTTGAAACAGAACTGCTAAAAATGTCCTGCTCCGTGACTCTGTCCCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR TCA 90 bp CCAGCAGCTTGTGGGGCAGCTGCAAATGGAAGCACCATTCTGGTCACAAGACACCGGCGTTGTAGAAGATaGGGAGGCCCTGGTCATAGT +
Preference number: 4 (lower is better)
Translates to: PAACGAAANGSTILVTRHRRCRR*GGPGHS
Trigger: ACTATGACCAGGGCCTCCTCATCTTCTACAACGCCG...GTGTCTTGTGACCAGAATGGTGCTTCCATTTGCAGCTGCCCCACAAGCTGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR GCA 90 bp CATCTGTCAGGCAAGGCTCTTGCTGGTGGTCACAGCCCCAGGAGGCTTTGGTCTAGTAGGAGCAGAGCTTaGCAGGAAACTTCTCTCGGA +
Preference number: 4 (lower is better)
Translates to: HLSGKALAGGHSPRRLWSSRSRA*QETSLG
Trigger: TCCGAGAGAAGTTTCCTGGCAAGCTCTGCTCCTACT...AGACCAAAGCCTCCTGGGGCTGTGACCACCAGCAAGAGCCTTGCCTGACAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp AAGCCATGTCACATCCCATTAAGATCAGAGCCACAGGGCATCAACCACGGAGTGTCGATGCCAGTGACCTaGTGTTGCTCGTGCAGCGCG +
Preference number: 4 (lower is better)
Translates to: KPCHIPLRSEPQGINHGVSMPVT*CCSCSA
Trigger: CGCGCTGCACGAGCAACACCAGGTCACTGGCATCGA...CACTCCGTGGTTGATGCCCTGTGGCTCTGATCTTAATGGGATGTGACATGGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR TCA 90 bp GGACCTGGGGCAACAAAGGAAGGCCCAGGCTGGGAAGTCATTTTGTCTCTATTTAAGCCGCGGCTAGGCTaGATCTGGATGCTGCCTTTG +
Preference number: 4 (lower is better)
Translates to: GPGATKEGPGWEVILSLFKPRLG*IWMLPL
Trigger: CAAAGGCAGCATCCAGATTCAGCCTAGCCGCGGCTT...AAATAGAGACAAAATGACTTCCCAGCCTGGGCCTTCCTTTGTTGCCCCAGGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR TCA 90 bp AAGCCATGTCACATCCCATTAAGATCAGAGCCACAGGGCATCAACCACGGAGTGGTCAAAGCGCTTTGGTaGGTCCTGCAGTGGTTGTGG +
Preference number: 4 (lower is better)
Translates to: KPCHIPLRSEPQGINHGVVKALW*VLQWLW
Trigger: CCACAACCACTGCAGGACTCACCAAAGCGCTTTGAC...CACTCCGTGGTTGATGCCCTGTGGCTCTGATCTTAATGGGATGTGACATGGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp GATCTTGCAAGTCACCAGGGAGCTGACTGCAAATTCTTGTCTGATGAAGTCAACCGACTGGCAGCCTCATaGGCCAGCCCAATCACCCAC +
Preference number: 4 (lower is better)
Translates to: DLASHQGADCKFLSDEVNRLAAS*ASPITH
Trigger: GTGGGTGATTGGGCTGGCCCATGAGGCTGCCAGTCG...GTTGACTTCATCAGACAAGAATTTGCAGTCAGCTCCCTGGTGACTTGCAAGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp AAAGGAAGGCCCAGGCTGGGAAGTCATTTTGTCTCTATTTCTGATGCTACTGATAGGATCAGGCGCTGGTaGGCAGTGCCTGGGTCCATG +
Preference number: 4 (lower is better)
Translates to: KGRPRLGSHFVSISDATDRIRRW*AVPGSM
Trigger: CATGGACCCAGGCACTGCCCACCAGCGCCTGATCCT...ATCAGTAGCATCAGAAATAGAGACAAAATGACTTCCCAGCCTGGGCCTTCCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp GGACCTGGGGCAACAAAGGAAGGCCCAGGCTGGGAAGTCATTTTGTCTCTATTTTTGATCCGCAGTGGTTaGACGTTCTTGCCATTGGCG +
Preference number: 4 (lower is better)
Translates to: GPGATKEGPGWEVILSLFLIRSG*TFLPLA
Trigger: CGCCAATGGCAAGAACGTCCAACCACTGCGGATCAA...AAATAGAGACAAAATGACTTCCCAGCCTGGGCCTTCCTTTGTTGCCCCAGGTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR TCA 90 bp TTGTGGATGGATCTATTCCACCTCCATGATAACTTTGTGGCTGAGGCTGGAAGACATCGTCGATGCCAGTaGCCTGGTGTTGCTCGTGCA +
Preference number: 4 (lower is better)
Translates to: LWMDLFHLHDNFVAEAGRHRRCQ*PGVARA
Trigger: TGCACGAGCAACACCAGGTCACTGGCATCGACGATG...TCTTCCAGCCTCAGCCACAAAGTTATCATGGAGGTGGAATAGATCCATCCACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp CCCCTAAGGAATTGGATCCAAAGTAAAATGGCCCATAGCTCTCCTGGTCAAGGGGCAGCTGGCACTGGATaGATGTCCTGGAAAAGCGAT +
Preference number: 4 (lower is better)
Translates to: PLRNWIQSKMAHSSPGQGAAGTG*MSWKSD
Trigger: ATCGCTTTTCCAGGACATCCATCCAGTGCCAGCTGC...CCCTTGACCAGGAGAGCTATGGGCCATTTTACTTTGGATCCAATTCCTTAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp TGGTCACAAGACACAAACCCTCTAGATGGTGGGAGCTGTTCCTGGAAACTCTGGGGTGTTGATCCGCAGTaGTTGGACGTTCTTGCCATT +
Preference number: 4 (lower is better)
Translates to: WSQDTNPLDGGSCSWKLWGVDPQ*LDVLAI
Trigger: AATGGCAAGAACGTCCAACCACTGCGGATCAACACC...CCAGAGTTTCCAGGAACAGCTCCCACCATCTAGAGGGTTTGTGTCTTGTGACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CAA 72 bp AGCGCTTATCCTGCCAGACCATCAAGGGCTGGTCACTaGTCTGTCTCTTTTGACTCTCGAAACCAAGGGACA +
Preference number: 4 (lower is better)
Translates to: SAYPARPSRAGH*SVSFDSRNQGT
Trigger: TGTCCCTTGGTTTCGAGAGTCAAAAGAGACAGACAAGTGACCAGCCCTTGATGGTCTGGCAGGATAAGCGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS-3UTR CCA 90 bp TTGTGGATGGATCTATTCCACCTCCATGATAACTTTGTGGCTGAGGCTGGAAGAAGATGCTCAGGCAGATaGAGCACAGCAGCTCGTCCT +
Preference number: 4 (lower is better)
Translates to: LWMDLFHLHDNFVAEAGRRCSGR*STAARP
Trigger: AGGACGAGCTGCTGTGCTCCATCTGCCTGAGCATCT...TCTTCCAGCCTCAGCCACAAAGTTATCATGGAGGTGGAATAGATCCATCCACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp AAAGGAAGGCCCAGGCTGGGAAGTCATTTTGTCTCTATTTCTGATGCTACTGATGGGGGCCTGTGTACTTaGAGGTCGGGAAGTCTTCGT +
Preference number: 4 (lower is better)
Translates to: KGRPRLGSHFVSISDATDGGLCT*RSGSLR
Trigger: ACGAAGACTTCCCGACCTCCAAGTACACAGGCCCCC...ATCAGTAGCATCAGAAATAGAGACAAAATGACTTCCCAGCCTGGGCCTTCCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CAA 72 bp GGCAAAGGCTGTCCTCTTCCATCCCTTTCAGTGATCTaGCAAGTCACCAGGGAGCTGACTGCAAATTCTTGT +
Preference number: 4 (lower is better)
Translates to: GKGCPLPSLSVI*QVTRELTANSC
Trigger: ACAAGAATTTGCAGTCAGCTCCCTGGTGACTTGCAAGATCACTGAAAGGGATGGAAGAGGACAGCCTTTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR GCA 90 bp TCAAAGTCTAGGTTCTGGACTCAAGTTTCCACAAAAAGAATCCCTCTGAAAGATGAAGAAGCAGAGCAGTaGGCGGTCCGTGAGGCAGAA +
Preference number: 4 (lower is better)
Translates to: SKSRFWTQVSTKRIPLKDEEAEQ*AVREAE
Trigger: TTCTGCCTCACGGACCGCGCACTGCTCTGCTTCTTC...ATCTTTCAGAGGGATTCTTTTTGTGGAAACTTGAGTCCAGAACCTAGACTTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp AGTTGGATTCATTGGCAAGGAAATTGTGGATGGATCTATTCCACCTCCATGATACCAGTTCCTCCAGCATaGCCTTCTGTCGCTCTCGAA +
Preference number: 4 (lower is better)
Translates to: SWIHWQGNCGWIYSTSMIPVPPA*PSVALE
Trigger: TTCGAGAGCGACAGAAGGCCATGCTGGAGGAACTGG...TATCATGGAGGTGGAATAGATCCATCCACAATTTCCTTGCCAATGAATCCAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp AGTTGGATTCATTGGCAAGGAAATTGTGGATGGATCTATTCCACCTCCATGATACAGGGCAGCTGGCACTaGATGGATGTCCTGGAAAAG +
Preference number: 4 (lower is better)
Translates to: SWIHWQGNCGWIYSTSMIQGSWH*MDVLEK
Trigger: CTTTTCCAGGACATCCATCCAGTGCCAGCTGCCCTG...TATCATGGAGGTGGAATAGATCCATCCACAATTTCCTTGCCAATGAATCCAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CAA 72 bp GTAATGGTATGTTGTGAGCTACCTGTCTTGTGTGACTaGCAGATCAGTGAGAGAGGAGGAAACCCACAGTTC +
Preference number: 4 (lower is better)
Translates to: VMVCCELPVLCD*QISERGGNPQF
Trigger: GAACTGTGGGTTTCCTCCTCTCTCACTGATCTGCAAGTCACACAAGACAGGTAGCTCACAACATACCATTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CAA 72 bp GGCTGGAAGAGGAAAAACTACATTTCTCAGAGTGCTTaGCAGTCAAAGTCTAGGTTCTGGACTCAAGTTTCC +
Preference number: 4 (lower is better)
Translates to: GWKRKNYISQSA*QSKSRFWTQVS
Trigger: GGAAACTTGAGTCCAGAACCTAGACTTTGACTGCAAAGCACTCTGAGAAATGTAGTTTTTCCTCTTCCAGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
3UTR CAA 72 bp CAGGTGGATTCATGGATTCTCCTGAGTTCTTCACAGTaGGATTCATTGGCAAGGAAATTGTGGATGGATCTA +
Preference number: 4 (lower is better)
Translates to: QVDSWILLSSSQ*DSLARKLWMDL
Trigger: TAGATCCATCCACAATTTCCTTGCCAATGAATCCAACTGTGAAGAACTCAGGAGAATCCATGAATCCACCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CCA 90 bp AGTTGGATTCATTGGCAAGGAAATTGTGGATGGATCTATTCCACCTCCATGATAACTGGATGGATGTCCTaGAAAAGCGATTTCCAGATG +
Preference number: 4 (lower is better)
Translates to: SWIHWQGNCGWIYSTSMITGWMS*KSDFQM
Trigger: CATCTGGAAATCGCTTTTCCAGGACATCCATCCAGT...TATCATGGAGGTGGAATAGATCCATCCACAATTTCCTTGCCAATGAATCCAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS TCA 90 bp GGCAGTCGCGGGCGCCCTGAGCCTCCTGCCGCACCCAGTGCTCGGTaGTGCAGCGGCGGCAGAAGTAGTGCTCGCAGCCCAGGCTCACCG +
Preference number: 5 (lower is better)
Translates to: GSRGRPEPPAAPSAR*CSGGRSSARSPGSP
Trigger: CGGTGAGCCTGGGCTGCGAGCACTACTTCTGCCGCCGCTGCATCACCGAGCACTGGGTGCGGCAGGAGGCTCAGGGCGCCCGCGACTGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035667.9
ENSMUST00000147852.2
CDS TCA 90 bp CGTCCAGCGGGAAGGCGCTGTAGCGCTCCACGATGTTGGCCAGCTTaGGGCTGGGCGCGAGCGCGGGCTCGGCGAACGTGCGCCGGCACT +
Preference number: 5 (lower is better)
Translates to: RPAGRRCSAPRCWPA*GWARARARRTCAGT
Trigger: AGTGCCGGCGCACGTTCGCCGAGCCCGCGCTCGCGCCCAGCCTCAAGCTGGCCAACATCGTGGAGCGCTACAGCGCCTTCCCGCTGGACG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035667.9
ENSMUST00000147852.2
CDS TCA 90 bp CAGAGCAGTGCGCGGTCCGTGAGGCAGAAGAGCTTGACCTTGTCGTaGGCCTGGCAGGGTCGCGCGGCTCGGCGCGCGTTGAGGATGGCG +
Preference number: 5 (lower is better)
Translates to: QSSARSVRQKSLTLS*AWQGRAARRALRMA
Trigger: CGCCATCCTCAACGCGCGCCGAGCCGCGCGACCCTGCCAGGCTCACGACAAGGTCAAGCTCTTCTGCCTCACGGACCGCGCACTGCTCTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035667.9
ENSMUST00000147852.2
CDS-3UTR CAA 90 bp GGTCCTCCATCTGTCAGGCAAGGCTCTTGCTGGTGGTCACAGCCCCAGGAGGCTACGATGTTGGCCAGCTaGAGGCTGGGCGCGAGCGCG +
Preference number: 5 (lower is better)
Translates to: GPPSVRQGSCWWSQPQEATMLAS*RLGASA
Trigger: CGCGCTCGCGCCCAGCCTCAAGCTGGCCAACATCGT...AGCCTCCTGGGGCTGTGACCACCAGCAAGAGCCTTGCCTGACAGATGGAGGACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CAA 90 bp AAGCCATGTCACATCCCATTAAGATCAGAGCCACAGGGCATCAACCACGGAGTGGCGGCTCGGCGCGCGTaGAGGATGGCGTCCAGCGGG +
Preference number: 5 (lower is better)
Translates to: KPCHIPLRSEPQGINHGVAARRA*RMASSG
Trigger: CCCGCTGGACGCCATCCTCAACGCGCGCCGAGCCGC...CACTCCGTGGTTGATGCCCTGTGGCTCTGATCTTAATGGGATGTGACATGGCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CAA 90 bp CAAATACTGACTGACGATGGTGCCAAGGTCCCCAGACAAATGCTCAGAGGACAGGCGGCTCGGCGCGCGTaGAGGATGGCGTCCAGCGGG +
Preference number: 5 (lower is better)
Translates to: QILTDDGAKVPRQMLRGQAARRA*RMASSG
Trigger: CCCGCTGGACGCCATCCTCAACGCGCGCCGAGCCGC...CTGTCCTCTGAGCATTTGTCTGGGGACCTTGGCACCATCGTCAGTCAGTATTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS GCA 90 bp GTGTTGCTCGTGCAGCGCGGGCTCATCACAGAAGAAGCAGAGCAGTaGGCGGTCCGTGAGGCAGAAGAGCTTGACCTTGTCGTGAGCCTG +
Preference number: 5 (lower is better)
Translates to: VLLVQRGLITEEAEQ*AVREAEELDLVVSL
Trigger: CAGGCTCACGACAAGGTCAAGCTCTTCTGCCTCACGGACCGCGCACTGCTCTGCTTCTTCTGTGATGAGCCCGCGCTGCACGAGCAACAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035667.9
ENSMUST00000147852.2
CDS GCA 90 bp AACTCCTCGAAGGCATCGTCGATGCCAGTGACCTGGTGTTGCTCGTaGAGCGCGGGCTCATCACAGAAGAAGCAGAGCAGTGCGCGGTCC +
Preference number: 5 (lower is better)
Translates to: NSSKASSMPVTWCCS*SAGSSQKKQSSARS
Trigger: GGACCGCGCACTGCTCTGCTTCTTCTGTGATGAGCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCGAGGAGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035667.9
ENSMUST00000147852.2
CDS GCA 90 bp CCCTGCAACTCCTCGAAGGCATCGTCGATGCCAGTGACCTGGTGTTaGTCGTGCAGCGCGGGCTCATCACAGAAGAAGCAGAGCAGTGCG +
Preference number: 5 (lower is better)
Translates to: PCNSSKASSMPVTWC*SCSAGSSQKKQSSA
Trigger: CGCACTGCTCTGCTTCTTCTGTGATGAGCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCGAGGAGTTGCAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS-3UTR CAA 90 bp GAAGGGGAGGAGGAGGGGACAAACAGTTGGCCTGAGGTCTCAGGGTGGCCACAGGTGGTCCGCAGGCTCTaGGTAGAGGACTTGGTCTCT +
Preference number: 5 (lower is better)
Translates to: EGEEEGTNSWPEVSGWPQVVRRL*VEDLVS
Trigger: AGAGACCAAGTCCTCTACCAAGAGCCTGCGGACCAC...CTGTGGCCACCCTGAGACCTCAGGCCAACTGTTTGTCCCCTCCTCCTCCCCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS GCA 90 bp CTCTGCAACTCCTCGAAGGCATCGTCGATGCCAGTGACCTGGTGTTaGTCGTGCAGCGCGGGCTCATCACAGAAGAAGCAGAGCAGTGCG +
Preference number: 5 (lower is better)
Translates to: LCNSSKASSMPVTWC*SCSAGSSQKKQSSA
Trigger: CGCACTGCTCTGCTTCTTCTGTGATGAGCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCGAGGAGTTGCAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS CCA 90 bp ATTGGCCCCTGCAACTCCTCGAAGGCATCGTCGATGCCAGTGACCTaGTGTTGCTCGTGCAGCGCGGGCTCATCACAGAAGAAGCAGAGC +
Preference number: 5 (lower is better)
Translates to: IGPCNSSKASSMPVT*CCSCSAGSSQKKQS
Trigger: GCTCTGCTTCTTCTGTGATGAGCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCGAGGAGTTGCAGGGGCCAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS-3UTR CAA 90 bp TCCGATCCAGCATCTATACCCTGCAAGACTATCGATCCCTGCTGGGGCTCAACTACGATGTTGGCCAGCTaGAGGCTGGGCGCGAGCGCG +
Preference number: 5 (lower is better)
Translates to: SDPASIPCKTIDPCWGSTTMLAS*RLGASA
Trigger: CGCGCTCGCGCCCAGCCTCAAGCTGGCCAACATCGT...AGTTGAGCCCCAGCAGGGATCGATAGTCTTGCAGGGTATAGATGCTGGATCGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS TCA 90 bp GCAGTGGTTGGACGTTCTTGCCATTGGCGTGGCTCTGGCCGGGGCTaGAGTAGGAGCAGAGCTTGCCAGGAAACTTCTCTCGGAAGGTGT +
Preference number: 5 (lower is better)
Translates to: AVVGRSCHWRGSGRG*SRSRACQETSLGRC
Trigger: ACACCTTCCGAGAGAAGTTTCCTGGCAAGCTCTGCTCCTACTTCAGCCCCGGCCAGAGCCACGCCAATGGCAAGAACGTCCAACCACTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS TCA 90 bp TCTCAATTGGCCCCTGCAACTCCTCGAAGGCATCGTCGATGCCAGTaGCCTGGTGTTGCTCGTGCAGCGCGGGCTCATCACAGAAGAAGC +
Preference number: 5 (lower is better)
Translates to: SQLAPATPRRHRRCQ*PGVARAARAHHRRS
Trigger: GCTTCTTCTGTGATGAGCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCGAGGAGTTGCAGGGGCCAATTGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS CCA 90 bp GTGCCTGGGTCCATGGTCAGGGCAGCTGGCACTGGATGGATGTCCTaGAAAAGCGATTTCCAGATGGTGTACTGCAGGGGGCCTGTGTAC +
Preference number: 5 (lower is better)
Translates to: VPGSMVRAAGTGWMS*KSDFQMVYCRGPVY
Trigger: GTACACAGGCCCCCTGCAGTACACCATCTGGAAATCGCTTTTCCAGGACATCCATCCAGTGCCAGCTGCCCTGACCATGGACCCAGGCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS TCA 90 bp CCTTCAGTTCTCTCTGCAACTCCTCGAAGGCATCGTCGATGCCAGTaGCCTGGTGTTGCTCGTGCAGCGCGGGCTCATCACAGAAGAAGC +
Preference number: 5 (lower is better)
Translates to: PSVLSATPRRHRRCQ*PGVARAARAHHRRS
Trigger: GCTTCTTCTGTGATGAGCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCGAGGAGTTGCAGAGAGAACTGAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS CCA 90 bp AGTTCTCTCTGCAACTCCTCGAAGGCATCGTCGATGCCAGTGACCTaGTGTTGCTCGTGCAGCGCGGGCTCATCACAGAAGAAGCAGAGC +
Preference number: 5 (lower is better)
Translates to: SSLCNSSKASSMPVT*CCSCSAGSSQKKQS
Trigger: GCTCTGCTTCTTCTGTGATGAGCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCGAGGAGTTGCAGAGAGAACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CAA 90 bp AGGCGGCTATTGTTTGTGCCTCAGGATCCTAAGGGAGCCAGATGTCAAGTCCAGTCTGCCAACTGTCGCTaGAGGAGCTGCAGCGCCTCC +
Preference number: 5 (lower is better)
Translates to: RRLLFVPQDPKGARCQVQSANCR*RSCSAS
Trigger: GGAGGCGCTGCAGCTCCTCAAGCGACAGTTGGCAGA...CTGGACTTGACATCTGGCTCCCTTAGGATCCTGAGGCACAAACAATAGCCGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CAA 90 bp GGACCTGGGGCAACAAAGGAAGGCCCAGGCTGGGAAGTCATTTTGTCTCTATTTTGGACGTTCTTGCCATaGGCGTGGCTCTGGCCGGGG +
Preference number: 5 (lower is better)
Translates to: GPGATKEGPGWEVILSLFWTFLP*AWLWPG
Trigger: CCCCGGCCAGAGCCACGCCAATGGCAAGAACGTCCA...AAATAGAGACAAAATGACTTCCCAGCCTGGGCCTTCCTTTGTTGCCCCAGGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CAA 90 bp GGCAGGAGGAGGGGAACAGAGAGCTTCCCTGTTCCTGAGAGAATGGGGATGAGGGTTGATCCGCAGTGGTaGGACGTTCTTGCCATTGGC +
Preference number: 5 (lower is better)
Translates to: GRRRGTESFPVPERMGMRVDPQW*DVLAIG
Trigger: GCCAATGGCAAGAACGTCCAACCACTGCGGATCAAC...CCTCATCCCCATTCTCTCAGGAACAGGGAAGCTCTCTGTTCCCCTCCTCCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS TCA 90 bp CTCGGAAGGTGTAGAGCCAGGACATGTCATCGGCGTTGTAGAAGATaGGGAGGCCCTGGTCATAGTCCAGGAAGACGCCCACCTTGTCAA +
Preference number: 5 (lower is better)
Translates to: LGRCRARTCHRRCRR*GGPGHSPGRRPPCQ
Trigger: TTGACAAGGTGGGCGTCTTCCTGGACTATGACCAGGGCCTCCTCATCTTCTACAACGCCGATGACATGTCCTGGCTCTACACCTTCCGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CAA 90 bp TGGTCACAAGACACAAACCCTCTAGATGGTGGGAGCTGTTCCTGGAAACTCTGGAGGGGGCCTGTGTACTaGGAGGTCGGGAAGTCTTCG +
Preference number: 5 (lower is better)
Translates to: WSQDTNPLDGGSCSWKLWRGPVY*EVGKSS
Trigger: CGAAGACTTCCCGACCTCCAAGTACACAGGCCCCCT...CCAGAGTTTCCAGGAACAGCTCCCACCATCTAGAGGGTTTGTGTCTTGTGACCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS GCA 90 bp GGCACTGGATGGATGTCCTGGAAAAGCGATTTCCAGATGGTGTACTaGAGGGGGCCTGTGTACTTGGAGGTCGGGAAGTCTTCGTACGTT +
Preference number: 5 (lower is better)
Translates to: GTGWMSWKSDFQMVY*RGPVYLEVGKSSYV
Trigger: AACGTACGAAGACTTCCCGACCTCCAAGTACACAGGCCCCCTGCAGTACACCATCTGGAAATCGCTTTTCCAGGACATCCATCCAGTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CAA 90 bp GGACCTGGGGCAACAAAGGAAGGCCCAGGCTGGGAAGTCATTTTGTCTCTATTTAGCTTGTCACGGACGTaGAGCCTAGTCCAGGGCTCT +
Preference number: 5 (lower is better)
Translates to: GPGATKEGPGWEVILSLFSLSRT*SLVQGS
Trigger: AGAGCCCTGGACTAGGCTCAACGTCCGTGACAAGCT...AAATAGAGACAAAATGACTTCCCAGCCTGGGCCTTCCTTTGTTGCCCCAGGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CAA 90 bp TGGTCACAAGACACAAACCCTCTAGATGGTGGGAGCTGTTCCTGGAAACTCTGGAGGAAGACGCCCACCTaGTCAAGCTTGTCACGGACG +
Preference number: 5 (lower is better)
Translates to: WSQDTNPLDGGSCSWKLWRKTPT*SSLSRT
Trigger: CGTCCGTGACAAGCTTGACAAGGTGGGCGTCTTCCT...CCAGAGTTTCCAGGAACAGCTCCCACCATCTAGAGGGTTTGTGTCTTGTGACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CAA 90 bp CCCCTAAGGAATTGGATCCAAAGTAAAATGGCCCATAGCTCTCCTGGTCAAGGGAGTGGTTGGACGTTCTaGCCATTGGCGTGGCTCTGG +
Preference number: 5 (lower is better)
Translates to: PLRNWIQSKMAHSSPGQGSGWTF*PLAWLW
Trigger: CCAGAGCCACGCCAATGGCAAGAACGTCCAACCACT...CCCTTGACCAGGAGAGCTATGGGCCATTTTACTTTGGATCCAATTCCTTAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CAA 90 bp GATCTTGCAAGTCACCAGGGAGCTGACTGCAAATTCTTGTCTGATGAAGTCAACATCTGGATGCTGCCTTaGCGACTGGCAGCCTCATGG +
Preference number: 5 (lower is better)
Translates to: DLASHQGADCKFLSDEVNIWMLP*RLAASW
Trigger: CCATGAGGCTGCCAGTCGCAAAGGCAGCATCCAGAT...GTTGACTTCATCAGACAAGAATTTGCAGTCAGCTCCCTGGTGACTTGCAAGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CAA 90 bp GATCTTGCAAGTCACCAGGGAGCTGACTGCAAATTCTTGTCTGATGAAGTCAACCTACGTCAAAGCGCTTaGGTGAGTCCTGCAGTGGTT +
Preference number: 5 (lower is better)
Translates to: DLASHQGADCKFLSDEVNLRQSA*VSPAVV
Trigger: AACCACTGCAGGACTCACCAAAGCGCTTTGACGTAG...GTTGACTTCATCAGACAAGAATTTGCAGTCAGCTCCCTGGTGACTTGCAAGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS-3UTR CAA 90 bp AAAGGAAGGCCCAGGCTGGGAAGTCATTTTGTCTCTATTTCTGATGCTACTGATCCCACCTTGTCAAGCTaGTCACGGACGTTGAGCCTA +
Preference number: 5 (lower is better)
Translates to: KGRPRLGSHFVSISDATDPTLSS*SRTLSL
Trigger: TAGGCTCAACGTCCGTGACAAGCTTGACAAGGTGGG...ATCAGTAGCATCAGAAATAGAGACAAAATGACTTCCCAGCCTGGGCCTTCCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS TCA 72 bp AACGTGCGCCGGCACTCCGGGCAGTCGCGGGCGCCCTaGGCCTCCTGCCGCACCCAGTGCTCGGTGATGCAG +
Preference number: 6 (lower is better)
Translates to: NVRRHSGQSRAP*ASCRTQCSVMQ
Trigger: CTGCATCACCGAGCACTGGGTGCGGCAGGAGGCTCAGGGCGCCCGCGACTGCCCGGAGTGCCGGCGCACGTT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035667.9
ENSMUST00000147852.2
CDS TCA 72 bp CGTGAGCCTGGCAGGGTCGCGCGGCTCGGCGCGCGTTaGGGATGGCGTCCAGCGGGAAGGCGCTGTAGCGCT +
Preference number: 6 (lower is better)
Translates to: REPGRVARLGAR*GWRPAGRRCSA
Trigger: AGCGCTACAGCGCCTTCCCGCTGGACGCCATCCTCAACGCGCGCCGAGCCGCGCGACCCTGCCAGGCTCACG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035667.9
ENSMUST00000147852.2
CDS TCA 72 bp GGGCGCCCTGAGCCTCCTGCCGCACCCAGTGCTCGGTaGTGCAGCGGCGGCAGAAGTAGTGCTCGCAGCCCA +
Preference number: 6 (lower is better)
Translates to: GRPEPPAAPSAR*CSGGRSSARSP
Trigger: TGGGCTGCGAGCACTACTTCTGCCGCCGCTGCATCACCGAGCACTGGGTGCGGCAGGAGGCTCAGGGCGCCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035667.9
ENSMUST00000147852.2
CDS TCA 72 bp GCGCGGTCCGTGAGGCAGAAGAGCTTGACCTTGTCGTaGGCCTGGCAGGGTCGCGCGGCTCGGCGCGCGTTG +
Preference number: 6 (lower is better)
Translates to: ARSVRQKSLTLS*AWQGRAARRAL
Trigger: CAACGCGCGCCGAGCCGCGCGACCCTGCCAGGCTCACGACAAGGTCAAGCTCTTCTGCCTCACGGACCGCGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035667.9
ENSMUST00000147852.2
CDS TCA 72 bp GCCCCTGCAACTCCTCGAAGGCATCGTCGATGCCAGTaGCCTGGTGTTGCTCGTGCAGCGCGGGCTCATCAC +
Preference number: 6 (lower is better)
Translates to: APATPRRHRRCQ*PGVARAARAHH
Trigger: GTGATGAGCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCGAGGAGTTGCAGGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS TCA 72 bp CCGCCACCACCACCTCCCAGTAGTGGACACCGCTACTaGAGGCTTCAGAGCCCAGCACCGACACCTCTACGT +
Preference number: 6 (lower is better)
Translates to: PPPPPPSSGHRY*RLQSPAPTPLR
Trigger: ACGTAGAGGTGTCGGTGCTGGGCTCTGAAGCCTTCAGTAGCGGTGTCCACTACTGGGAGGTGGTGGTGGCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS CCA 72 bp GCAGTGGTTGTGGGTGTAGGTTCCCGTAGGCCACGATaGTGCAGTCATCGGACAGGATCAGGCGCTGGTGGG +
Preference number: 6 (lower is better)
Translates to: AVVVGVGSRRPR*CSHRTGSGAGG
Trigger: CCCACCAGCGCCTGATCCTGTCCGATGACTGCACCATCGTGGCCTACGGGAACCTACACCCACAACCACTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS CAA 90 bp CCCCTGCAACTCCTCGAAGGCATCGTCGATGCCAGTGACCTGGTGTaGCTCGTGCAGCGCGGGCTCATCACAGAAGAAGCAGAGCAGTGC +
Preference number: 6 (lower is better)
Translates to: PLQLLEGIVDASDLV*LVQRGLITEEAEQC
Trigger: GCACTGCTCTGCTTCTTCTGTGATGAGCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCGAGGAGTTGCAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147852.2
CDS TCA 72 bp CTCTCTGCAACTCCTCGAAGGCATCGTCGATGCCAGTaGCCTGGTGTTGCTCGTGCAGCGCGGGCTCATCAC +
Preference number: 6 (lower is better)
Translates to: LSATPRRHRRCQ*PGVARAARAHH
Trigger: GTGATGAGCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCGAGGAGTTGCAGAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS GCA 72 bp GTGCAGCGCGGGCTCATCACAGAAGAAGCAGAGCAGTaGGCGGTCCGTGAGGCAGAAGAGCTTGACCTTGTC +
Preference number: 6 (lower is better)
Translates to: VQRGLITEEAEQ*AVREAEELDLV
Trigger: GACAAGGTCAAGCTCTTCTGCCTCACGGACCGCGCACTGCTCTGCTTCTTCTGTGATGAGCCCGCGCTGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035667.9
ENSMUST00000147852.2
CDS GCA 72 bp TCCTCGAAGGCATCGTCGATGCCAGTGACCTGGTGTTaGTCGTGCAGCGCGGGCTCATCACAGAAGAAGCAG +
Preference number: 6 (lower is better)
Translates to: SSKASSMPVTWC*SCSAGSSQKKQ
Trigger: CTGCTTCTTCTGTGATGAGCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCGAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035667.9
ENSMUST00000147852.2
CDS CCA 72 bp TGCAACTCCTCGAAGGCATCGTCGATGCCAGTGACCTaGTGTTGCTCGTGCAGCGCGGGCTCATCACAGAAG +
Preference number: 6 (lower is better)
Translates to: CNSSKASSMPVT*CCSCSAGSSQK
Trigger: CTTCTGTGATGAGCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCGAGGAGTTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035667.9
ENSMUST00000147852.2
CDS CAA 72 bp CTCCTCGAAGGCATCGTCGATGCCAGTGACCTGGTGTaGCTCGTGCAGCGCGGGCTCATCACAGAAGAAGCA +
Preference number: 6 (lower is better)
Translates to: LLEGIVDASDLV*LVQRGLITEEA
Trigger: TGCTTCTTCTGTGATGAGCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCGAGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035667.9
ENSMUST00000147852.2
CDS CAA 72 bp AGGAAGACGCCCACCTTGTCAAGCTTGTCACGGACGTaGAGCCTAGTCCAGGGCTCTGTGCAGGCGCTGTAC +
Preference number: 6 (lower is better)
Translates to: RKTPTLSSLSRT*SLVQGSVQALY
Trigger: GTACAGCGCCTGCACAGAGCCCTGGACTAGGCTCAACGTCCGTGACAAGCTTGACAAGGTGGGCGTCTTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS CAA 90 bp TCTCTGCAACTCCTCGAAGGCATCGTCGATGCCAGTGACCTGGTGTaGCTCGTGCAGCGCGGGCTCATCACAGAAGAAGCAGAGCAGTGC +
Preference number: 6 (lower is better)
Translates to: SLQLLEGIVDASDLV*LVQRGLITEEAEQC
Trigger: GCACTGCTCTGCTTCTTCTGTGATGAGCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCGAGGAGTTGCAGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9
CDS GCA 72 bp AAGGCATCGTCGATGCCAGTGACCTGGTGTTGCTCGTaGAGCGCGGGCTCATCACAGAAGAAGCAGAGCAGT +
Preference number: 6 (lower is better)
Translates to: KASSMPVTWCCS*SAGSSQKKQSS
Trigger: ACTGCTCTGCTTCTTCTGTGATGAGCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035667.9
ENSMUST00000147852.2
CDS CAA 72 bp CAGAGCCCAGCACCGACACCTCTACGTCAAAGCGCTTaGGTGAGTCCTGCAGTGGTTGTGGGTGTAGGTTCC +
Preference number: 6 (lower is better)
Translates to: QSPAPTPLRQSA*VSPAVVVGVGS
Trigger: GGAACCTACACCCACAACCACTGCAGGACTCACCAAAGCGCTTTGACGTAGAGGTGTCGGTGCTGGGCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035667.9